>input_sequence_86831
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---------------------------ATGGCGCCACCTAGTCATCGCAAGACGTCGTGGCGGGAGGTGGTGGGCATGCC
GGCCACGCCGGCGGTGATGAAGATCATGACGGACAGGCCCGACCTGTCCGTGGAGGTGCTCCCGCCGGGCACCAATCTGC
TGCCCGGAGCCAACCCTGGGCGTGTCCGCGTCTTCATCGATGCTCTCGGCGTCGTCACCAAGACCCCTGTCATCGGTTAG
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>chr6B_1_TraesCS6B01G106700
CTGAGATCAAAACTGAAGCCGTAAAA----AAATC-GTTCTCTCATATTGGTGATGTCTCAAATATCGTATAAGTTATGT
AAAAGTATTTTAACCTTTTCTGTAGAATTTTGCCTGATCTTTTAATTGACATTCTGATTTTGTATCAACGTTGCATTTAA
AAATCAATTTCTATTTCTTGTGATTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTCAGTGAAAAAATTGATGCA
GGTAAGAGTTTTAAATCAGTAGTCT------------G------------AAACAAGTGACGAAACTAAAATACCTCATT
TTCCAAATTGAACAATGTTGGATGGAGAGAGTTAGTGTAATTATGGAC---------------------------GCTTC
AAACGACATGCTCTGCAGCCATCTTCTAATCAAG---TAG----------------------------------------
----------------------------------------------TAGCATGAATCAGTGTAGTTATTGTGGTGCAGCT
GGCCATTTTGACTGGCATGTTAATCAACGCACGTCTTTAAAGCGCGAGTCTGCCTTCTGGGCCATCTCCTGGCAATGTCA
GAAGTAATACAAGACTTGTACTAATTGTATACGGTGGATGATATTTATTATACAGGCTCGATGTATTAGAGCTGCACGAA
TCGTGCGGAAATGGTCGGTCTTGATAACGACCTCGCGTGGCTGCATGCATGTCCACCCATAATTTATTGAACATGTACTC
CTTTTGTAAAAAAATATAAAAGCGTTTAGATCACTAGTAGTACAAATGAAGGGAGTGCTACTTTGGAGGAAAGTGTCTCC
AGTGAACACTCCTATGATGATTTGACTGTTTCCCAATCAT-AAAAAGAAATAGTTAATTTCCTTGCTGTTTGCCCAGCAA
GCAAGAACGCAAACGCCAAACATGGGTACGGCAAAACCAACGTTCTTCAAGACCTAGTAGTAGTACTAC-TAGTATATAA
ACACATGTTCAGAGTGGAGAAGAGGCCATGCATACGAAGTCTTTGCAAATTGCTTCCGGAGCTTCGATATCCGCAAGCTG
CTGATAAAAATTAAGCTTTCGGGAAAAATGGCGCCACCTAGTCATCGCAAGACGTCGTGGCGGGAGGTGGTGGGCATGCC
GGCCACGCCGGCGGTGATGAAGATCATGACGGACAGGCCCGACCTGTCCGTGGAGGTGCTCCCGCCGGGCACCAATCTGC
TGCCCGGAGCCAACCCTGGGCGTGTCCGCGTCTTCATCGATGCTCTCGGCGTCGTCACCAAGACCCCTGTCATCGGTTAG
CTAGCCACGTATGATTATCGGCTTGCA----------------TGTATGCATGCATCCTTCCTTGGAAGTGTGTAACTCA
CGTTTAATCATTTGCTCGATTACGCCGTTTGATTCGAGTCAA--------GTATGTGATCTATCTTGGGGATAATTAATA
AGAGCAGTCTGTAAGCAAGTTATCTCATTCTTTTC----TACTTCGTTCACATTGTTTTTT-----CTTCAAAAAAATGA
CTTTGGTTTTCTAGACCTAAGGATCAAGACAGGCCCGACTTTAAATTAATATAAAATTATTGATCATGTACAAGATGTGA
AATGCATAAAACCACCACAATTTTGTCATTATTAGCAAAGAGCCAGA---------------------------------
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------------------------------------GTAGCAGGATCCAGTGCAGATGAGGGCCTGTTCGATGATTGGAT
CCCCGTGATGGACGAGTCCAGGCAACTAATGGCTGCACGAGTGAGGGGCGTGAGGGAGCAGTGCTGACACTGAAGGAAGG
AGGCACAAGGCAGTGTTGTGTTTGAGCGGGAGGATCCGT-GCTGGGTGGGCGGTAAGGAGGTCCTCGCGGCTCGATTTAG
GGGTGAGCTGGCGCGGGACGGAGGTTGGGCGCGCTGGTGGGGTAGTGGACAAGTTGGATTTGTCGGAGGAAGGTGATGGT
GAGGTGGGTTTGGGCGGTACCGTCGAAGAAGGTGGAGGAGGGTGTGGGGTTGAAGTATGTCTGTGGGTGGGTGATGCAGA
GGTGGGATGGTGCAGGGGAGGCTCCAGCGTGGGGTTGTGTAGGGGCGGCCGCCCCAGGTAAATTTTCGAAACCTAGGGTA
CCCCCCCTACTCATCTTAGCCGGCGGCCACCATGGGAGGCGAGCAGTTTCGCTGGAAGGCCTCAGGTCTGGTCGAGCATG
ACAAGGGAAGAGGAAAACGATTCGCTGCCAAACATAACTGCTCGCTAGAGATCTATTAATCTATAGATGGGCCAATCAAG
TAAGCCCAATAAAAATTAGATGAGCCCATTAGTACGCAGCCTGATTTTTACGTTCACAAGTCC
>chr4B_1
CTGAGATCAAAACTGAAGCTGTAAAA----AAAATTGTTCTCCCATATTGGTGATGTCTCAAATATCATATAAGTTATGT
AAAAGTATTTTAACTTTTTCTGTAGAATTTTGCCTGATCTTTTAATTGACATTCTGATTTTGTATCAATGTTGCATTTAA
AAATAAAATTCTATTTCTTGTGATTCAAGTTAACTAGGAAGAATGGAGTTAAGTGATTTTTCAGTGAAAAAATTGATGCA
TGTAAGAGTTTTAAATCAGTAGTC------------CG------------AAACAAGTGACGAAACTAAAATACCTCATT
TTCCAAATTGAACAATGCTGGATGGAGAGAGTTAGTGTGATTATGGACATGGTGCATGCTTTCAATGTAGTTAACGCTTC
AAACGACATGCTCCGCGGCCATCTTCTAATCAAG---TAC----------------------------------------
----------------------------------------------TAGCATGGATCAGTGTAGTTATTGTGGTGCAGCT
GGCCATTTGGACTGACATGTTAATCAACGCGCGTCTTCAATGCGCGAGTCTGCCTTCTGGGCCATCTCCTGGCAAGGTCA
GAAGTAATACAAGAGCTGTACTAATTGTATACGGTGGATGAAATTTATTATACAGGCTCGATGTATTAGAGCTGCATGAA
TCGCGCGGAAACGGTCGGTCTTGATAATGACCTCGCGTGGTTGTATG----TCCACTCATGATTTAT-------------
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>chr7D_1
CTGAGATCAAAACCGAAGCCGTAAAA----AAATC-GTTCTCTCATATTGGTGATGTCTCAAATATCCTATAAGTTATGT
AAAAGTATTTTAACTTTTTCTATAGAATTTTGCCTGATCTTTTAATTGACATTCTAATTTTGTATCAACGTTGCATTTTA
AAATCAGATTCTATTTTTTGTGATTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTCAGTGAAAAAATTGATGCA
TGTAAGAATTTTAAATCAGTAGTC------------CG------------AAACAAGTGACGAAACTAAAATACCTTATT
TTACAAACTGAACAATGCTGGATGGAGAGAGCTAGTGTGATTATGGACATGGTGCATGCTTTCAATGTAGTTAACGCTTC
AAACGACATGCTCCGCGGCCATCTTCTAATTAAG---TAC----------------------------------------
----------------------------------------------TAGCATG-----GTGTAGTTATTGTGGTGCAGCT
GGCCATTTGGACTGACATGTTAATCAATGCACGTCTTCAATGCGCGAGTCTGCCTTCTGGGCCATCTCCTGGCAAGGTCA
GAAGTAATACAAGAGCTGTACTAATTCTATGCGGTGGATGAAATTTATTATACAGGCTCGATGTATTAGAGCTGCACGAA
TCGCACGGAAACGGTCGGTCTTGATAACGACCTCGCGTGGCTGCATG----TCCACTCATAATTTAT-------------
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>chr7D_1
CTGAGATCAAAACCGAAGCCATAAAA----AAATC-ATTCTCTAATATTGGTGATATCTCAAATATCCTATAAGTTATGT
AAAAGTATTTTAACCCTTTCTGTAGAATTTTGCCTGATCTTTTAATTGACATTCTGATTTTGTATCAACGTTGCATTTAA
AAATCAGATTCTATTTTTTATGATTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTTAGTCAAAAAATTGATGCA
TGTAAGAGTTTTAAGTCAGTAGTC------------CG------------A------------AACTAAAAAACCTCATT
TTCCAAATTGAACAATGTTGGATGGAGAGAGCTAGTGTGATTATGGACAGGCTGCATGCTTTCAATGTAGTTAACGCTCC
AAACGACATGCTCCGCGGCCATCTTCTAATCAAG---TAC----------------------------------------
-------------------------------------------------CATGGAT-AGTGTAGTTATTGTGGTGCAGCT
GGCCATTTAGACTGACATGTTAATCAACGCACGTCTTCAATGCGCGAGTCTGCCTTCTAGGCCATCTCCTGGCAAGGTCA
GAAGTA-TACAAGAGTTGTATTAATTGTATACGGTGGATGGAATTTATTATACAGGCTCGATGTATTAGAGCTGCACGAA
TCGCGCGGAAACAATCGGTCTTGATAATGACCCCGCGTGGCTGCATG---------------------------------
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>chr2A_1
CTGAGATCAAAACCGAAGCCGTAAAA----AATG--GTTCTCTCATATTGGTGATATCTCAAATATCCTATAAGTTATGT
AAAAATATTTTAAT-TTTTTTGTAGAATTTTGCTTGATCTTTTAATTGACATTCTGATTTTGTATCAACGTTGCATTTAA
AAATCAGATTCTATTATTTGTGATTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTCAGTC-AAAAATTGATGCA
TATAAGAGTTTTAAATCAGTAGTC------------CG------------AAACAAGTGACGAAACTAAAATACCTAATT
TTCCAAATTGAACAATGCTGGATGGAGAGAGCTAGCGTGATTATGGACAGGGTGCATTCTTTCAATGTAGTTAACGCTTC
AAACAACATGCTCCGCGGCCATCTTCTAATCAAG---TA-----------------------------------------
------------------------------------------------GCATGGATCAGTGTAGTTATTGTGGTGCAGCT
GGCCATTTGG---GACATGTTAATCAACGCACATCTTCAATGCGCGAGTCTGCCTTCTGGGCCATCTCCTGGCAAGGTCA
GAAGTAATACAAGAGTTGTACTAGTTGTATATGGTGGATGAAATTTATTATACAGGCTCGATGTATTAGAGCTGCACGAA
TCGCGTGAAGACGGTCGGTCTTGATAACGACCTCGCGTGGCTGCATG----TCCACTCATGATTTAT-------------
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>chr2D_1
CTGAGATCAAAACCGAAGCCGTAAAA----AAACC-ATTCTCTCATATTGGTGATGTCTCAAATATCCTATTAGTTATGT
AAATGTATTTTAACCTTTTCTGTAGAATTTTGCCTGATCTTTTAATTGACATTTTGGTTTTGTATCAACGTTGCATTAC-
AAATCAGATTATATTTTTTGTGATTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTAAGTCAAAAAATTGATGCA
TGTAAGAGTTTTAAATCAGTAGTC------------CG------------A------------AACTAAAATACCTCATT
TTCCAAATTGAACAATGTTGGATGGAGAGAGTTAGTGAGATTATGGACAGGCTGCATACTTTCAATGTAGTTAACGCTTC
AAACGACATGCTCCGTGGCCATCTTCTAATCAAG---TAC----------------------------------------
-------------------------------------------------CATGGATCAGTGTAGTTATTGTGGTGCAGCC
GGCCATTTGAACTGACATGTTAATCAACACACGTCTTCAATGCGCGAGTCTGCATTCTGGGCCATCTCCTGGCAAGGTCA
GAAGTA--------------------------------------------------------------------------
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>chr7A_1
CTGAAATCAAAATCAAAGCCCTAAAA----AAACC-GTTCTCTCTTATTGGTGATGTCTCAAATATCCTATAAGTTATGT
AAAAGTATTTTGACTTTTTCAGTAGAATTTTGCCTGATCTTTTAATTGACATTCTGATTTTGTATCAACGTTGCATTTAA
AAATCAGATTCTACTTTTTGTGATTCAAGTTAACTATGAAGGATGGAGTTAAGTGATTTTTCAATGAAAAAATTGATGCA
TGTAAGAGTTCTAAATCAGTAGTC------------CGAAACAAATGACAA------------AACTAAAATACCTCATT
TTCCAAATTGAACAATGCTGGATGGAGAGAGCTAGTGTGATTATGGACATGGTGCATGCTTTCAATGTAGTTAACGCTTC
AAAAGACATGCTCCGCGGCCATCTTTTAATCAAG---TACTCCCTCTGTAAACTAATATAAGAGCGTTTAGATCACTATT
TTACTTATCTAAACGCCCTTATATTAGTTTATGGAGGGAGTACTACTAGCATGGATCAGTGTAGTTATTGTGGTGCAGCT
GGCCATTTGGACTGACATGTTAATCAACACATGTCTTCAATGCGCGAGTCTGCCTTCTGGGCCATCTCCTGGCAAGGTCA
GAAGTAATACAAGAGTTGTACTAACTGTATACGGTGGATGAAATTTATTATACAGACTCGATGTATTAGAGCTGCACGAA
TCACGCGGAAATGGTCGGTCTTGATAACGACCTCGCGTGGCTGCATG----TCCACTCATGATTTAT-------------
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>chr2A_6
-----ATCAAAACCGAAGCCGTCAAAGAACAAATC-GTTCTCTCATATTGGTGATGTCTCAAATATCCTATAAGTTATGT
AAAAGTATTTTAACCATTTTTGTAGAATTTTGCCTGATCTTTTAATTGACATTCTGATTTTGTATCAACGTTGCATTTAA
AAATCAGATTCTATTTTTTGTGTTTCAAGTTAACTATGAAGAATGGAGTTAAGTGATTTTTCAGTC-AAAAATTGATGCA
TATAAGAGTTTTAAATCAGCAATCCAAAACAAGTGACG------------A------------AACTAAAATACCACATT
TTCAAAATTGAAAAATGCTGGACGGAGAGAGCTAGTGTGATTATGGACAGGGTGCATTCTTTCAATGTAGTTAACGCTTC
AAACCACATGCTCCGCGGCCATCTTCTAATGAAGGAGTA-----------------------------------------
------------------------------------------------GCATGGATCATTGTAGTTATTGTGGTGCAGCT
GGCCATTTGGACTGACATGTTAATCAACGCACGCCTTCAATGCGCGAGTTTGCCTTCTGGACCATCTCCTGGCAAGGTCA
GAAGTAATACAAGAATTGTACTAATTATATACGGTGGATGAAATTTATTATACAGGCTCGATGTATTAGAGCTGCACGAA
TCGTGCGGAAAAGGTCGGTCTTGATAACGACCTCGCGTGGCTGTGTG----TCCACTCATGATTTATTG-----------
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>chr6D_705
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-------------------------------------------------AGGGAGTACTATTTTGGAGGAAGTGA-CTCC
AGTGATCACTCCTATGATGATTTGACTGTTTCCCAATGAT-AAAAAGAAATAGTTAATTTCCTTGCTGTTTGCCCAGCAA
GCAAGAACGCACGCGCCAAACTAGGGTACGGCAAAACCAACGTTCTTCAAGACCTAGTACTACTACTCCGTAGTATATAA
ACACATGTTCAAAGTGGAGGAGAGGCCATATAC----AGTCTTTGCAAATTGCTTCCGGAGCTTCGATATTTGCAAGTTG
CTGATAAAAGTTAAGCTTTCCGAAAAGATGGCGCCACCGAGTCACCGCAAGACGTCGTGGCCGGAGGTGGTGGGCATGCC
GGCCACGCCAGCGGTGATGAAGATCATGACGGACAGGCCCGACCTCTCCGTGGAGGTGCTCCCGCCGGGAACCAATCTGC
TCCCCGGAGCCAACCCTGGGCGTGTCCGCGTCTTCATCGACGCTCTCGGCGCCGTCACCAAGACCCCTGTCATCGGCTAG
CTAGCCACGTATGATTATCTGCTTGCA----------------TG----------------CATGGAAGTGTGTAACTCA
CGTTTAATCATTTGCTCGATTACACCGTTTGATTCGAGTCAA--------GTATGTGATCTATCTTGGGGATAATTAATA
AGAGCAGTCTGTAAGCAAGTTATCTGATTCTTTTC----TACTTCGTTCACATTATTTTCT-----CTTTAAAAAAGTGA
CTTTGGTTTTCTAGACCTAAGGATCAAGACGGGCCTGACTTTAAATTAATATAAAATTATTGATCATGTACACGGTGTGA
AATGCATAAAACCATCACAATTTTGTCATTGTTAGCAAAAAACATTGGCTTTTGATTCCCATCACAAAATGCACCGAACA
CAATGCTAAATGTTGACAAAATGCACTGAATGCCGCTTGACCTCGTATTTGACATGACGAAGGGCTGACATGGCAAAGGG
ATAGACAGTGCTGACTAACAGACATTAAAATCGATGTGAGGAGAACACACCAACTGACAAGCTGCATCCGTGGACCAGCA
GAACGGACCCTTCCTCTAATTCTCTTCACCCACTTTGAATTTCAGCTAGGTGGGGCCTCTTCGTCCCCCTTAATTCACAT
ATTTGACCTCCTTCATCTGTCACACTGGAAGGTAGTGGAAGGAACATCGGTGCCCATGGAGTAGGCATGGCCGGACGGTG
ACCCTCGAGGGCGGTGCGGACCACACAGCATGATGACCAAATCCGCCGGGGGGGAGGGGGGGGGGGCTGCCATGACCGCG
CTCCGTATACTATGATTCATAGAGCTGAGGTGCAGCGAGGAGTTCACGGAGGCGCTTGATTGGGGTAGACCTAATACCGT
GCCTCAGCGAGTCTATTGGCTACGCAAAGGGCCAGGGTAGCAGGATCCAGTGCAGACGAGGGCCTGTTCGATGATTGGGT
CCCCGTGACGGACGAGTCCAGGCAACTAATGGTTGCTTGGGTGAGGGGCGTGAGGGAGCAGTGCCGACACTGATGGAAGG
AGGCACAAGGTAGTGTTGTGTTTGAGCCGGAGGAGGCGGCGCTGGGTGGGCGGTAAGGAGGTCCTCACGGCTCGGGTTAG
GGGTGAGATGGCGCGGGACTGAGGTTGGGCGTGCTGATGGGGTAGTGGACAAGTTGGATTCGTCGGAGGAAGGTGATGGT
GAGGTGGGTTTGGGCGGTACCGTCGAAGAAGGTGGAGGAGGGTGCGGGGTTGAAGTATGTCTGTGGGTGGGTGATGCAGA
GGTGGGTTGGTG--------------------------------------------------------------------
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>chr6A_714
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----------------------------------------------------------TACTTTGGAGGAAAGTGTCTCC
AGTGATCACTCCTATGATGATTTGACTGTTTCCCAATCATAAAAATGAAATAGTTAATTTCCTTGCTGTTTGCCCAGCAA
GCAAGAACGCACGCGCCAAACAAGGGTGCGGCAAAACCAACGTTCTTCAAGACCTAGTACTACTACACCGTAGTATATAA
ACACATGTTCAAAGTGGAGGCGAGGCCACATAC----AGTCTTTGCAAATTGCTTCCGGAGCTTCGACATCCGCAAGCGG
CTGATACAAATTAAGCTTTCGGAAAAAATGGCGCCACCTAGTCACCGCAAGACGTCGTGGCCGGAGGTGGTGGGCATGCC
GGCCACGCCGGCGGTGATGAAGATCATGACGGACAGGCCCGACCTCTCCGTGGAGGTGCTCCCGCCGGGCACCAATCTGC
TCCCCGGAGCCAACCCTGGGCGTGTCCGCGTCTTCATCGACGCTCTCGGCGCCGTCACCAAGACCCCTGTCATCGGCTAG
CTAGCCACGTATGATT-TCAGCTTGCATGTATGCATGCACGCTTG----------------CTTGGAAGTGTGTAACTCA
CGTTTTATCATTTGCTCGGTTACACCGTTTACACCGTTTGATAGAGCCATGTATGTGATCTATCTTGGGAATAATTAATA
AGAGCAGTTTGTAAGCAAGTTGTCTGATTCTTTTTTTTTTACTTCGTTCACATTGTTTTTTTTTTCCTTTAAGATGGTGA
CTTTGGTTTTCTAGAATGAAGGATCGAGACAAGCCCGGCTTTAAAATAATAAAATCATCA--ATCATGTACAAGGTGTGA
AATGCATAAAACCACCATAATTTTGTCATTATTAACAA------------------------------------------
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>SNPs
-------------------------------------------------------------------S------------
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-------S------------------------------------------------------------------------
S-----------------------S-------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------S--S----------------------S----------------------------------------
-----------------------------------------------------S--------------------------
--------S-----S----------------------S--S----------------------------------S----
--------------S--------------------------S--------------------------------------
-----------------------------------------------SSSS-----S------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------------------
-----S--------------------------------------------------------------------------
-----------SS---------S------------------------------------S--S----S------------
-----------S-------S---------SS-SSSSS-------------------------------------------
----------------------S---------------------S----------------S------------------
---------------------------------------------S----------------------------------
-S--------------------------------------S----------S------------------------S---
-------------------S-------------------------SSSSSSSSSSSSSSSS-------------------
-----------------------S--------------------------------------------------------
-------------------------S-------------------------------------------S------S---
--------------------------------------------------------------------------S-----
---------------------------------------S-S-SSSS---------------------------------
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--------------------------------------------------------S---------------------S-
--------S-----------------------S---SS-S------------------------S--------S------
----------S----------------S------SS--S---------------------------S-------SS----
-------S-----------S-----------S----S-----------------------S-------------------
--------------------------------------------S-----------------------------------
------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1073
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-------------GTGGAGAAGAGGCCATGCAT-----------------------------------------------
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>reverse_2790
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---------------------------------------------------------------------GGTCGAGCATG
ACAAGGGAA-----------------------------------------------------------------------
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