Multiple sequence alignment - TraesCS6B01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G089400 chr6B 100.000 2936 0 0 1 2936 64866313 64869248 0.000000e+00 5422.0
1 TraesCS6B01G089400 chr6A 88.531 2171 151 55 677 2797 35471201 35473323 0.000000e+00 2540.0
2 TraesCS6B01G089400 chr6A 91.304 391 28 2 1 385 35353230 35353620 2.000000e-146 529.0
3 TraesCS6B01G089400 chr6A 97.727 44 1 0 632 675 35471139 35471182 3.140000e-10 76.8
4 TraesCS6B01G089400 chrUn 91.686 1708 60 34 461 2103 101394775 101393085 0.000000e+00 2292.0
5 TraesCS6B01G089400 chrUn 89.716 457 33 6 1 443 101395192 101394736 3.280000e-159 571.0
6 TraesCS6B01G089400 chr4B 73.457 324 76 10 2242 2560 396452779 396452461 2.390000e-21 113.0
7 TraesCS6B01G089400 chr4B 93.023 43 3 0 494 536 63793712 63793754 2.440000e-06 63.9
8 TraesCS6B01G089400 chr2B 73.148 216 51 7 2240 2450 61334182 61333969 1.460000e-08 71.3
9 TraesCS6B01G089400 chr2B 97.297 37 1 0 500 536 225569850 225569886 2.440000e-06 63.9
10 TraesCS6B01G089400 chr3B 95.349 43 1 1 495 536 408415206 408415164 1.890000e-07 67.6
11 TraesCS6B01G089400 chr6D 97.297 37 1 0 498 534 13102102 13102066 2.440000e-06 63.9
12 TraesCS6B01G089400 chr1D 91.489 47 3 1 491 536 47948750 47948796 2.440000e-06 63.9
13 TraesCS6B01G089400 chr7D 94.872 39 2 0 498 536 72219335 72219297 8.790000e-06 62.1
14 TraesCS6B01G089400 chr4D 94.872 39 2 0 498 536 16652516 16652478 8.790000e-06 62.1
15 TraesCS6B01G089400 chr3A 93.023 43 2 1 497 538 61314591 61314633 8.790000e-06 62.1
16 TraesCS6B01G089400 chr1A 92.857 42 3 0 493 534 457962426 457962385 8.790000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G089400 chr6B 64866313 64869248 2935 False 5422.0 5422 100.000 1 2936 1 chr6B.!!$F1 2935
1 TraesCS6B01G089400 chr6A 35471139 35473323 2184 False 1308.4 2540 93.129 632 2797 2 chr6A.!!$F2 2165
2 TraesCS6B01G089400 chrUn 101393085 101395192 2107 True 1431.5 2292 90.701 1 2103 2 chrUn.!!$R1 2102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 333 0.177141 TGGATCCGGGTGAATCGAAC 59.823 55.0 7.39 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2411 0.031449 GGCTCCATCGACTCTGTAGC 59.969 60.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 5.633655 TTTCACTACAAAACCCTAGTGGA 57.366 39.130 4.45 0.00 40.17 4.02
72 74 8.652290 GGACAAGATTTCCCTATTGTATACTCT 58.348 37.037 4.17 0.00 36.08 3.24
98 100 0.328450 AATGCCCTAGGGTGATGGGA 60.328 55.000 28.96 3.19 43.47 4.37
100 102 0.328450 TGCCCTAGGGTGATGGGAAT 60.328 55.000 28.96 0.00 43.47 3.01
135 137 4.166919 CCTTGGATTTCAGGAGAATACCCT 59.833 45.833 0.00 0.00 32.89 4.34
136 138 5.340360 CCTTGGATTTCAGGAGAATACCCTT 60.340 44.000 0.00 0.00 32.89 3.95
137 139 6.126478 CCTTGGATTTCAGGAGAATACCCTTA 60.126 42.308 0.00 0.00 32.89 2.69
147 150 4.331992 GGAGAATACCCTTAAGCAACGAAC 59.668 45.833 0.00 0.00 0.00 3.95
152 155 4.499037 ACCCTTAAGCAACGAACAATTC 57.501 40.909 0.00 0.00 0.00 2.17
154 157 3.366985 CCCTTAAGCAACGAACAATTCCC 60.367 47.826 0.00 0.00 0.00 3.97
256 266 2.867368 TCGACTCTCTCATCGCTAGAAC 59.133 50.000 0.00 0.00 38.24 3.01
277 292 2.174107 CGTTACGTCGTCAGCCGA 59.826 61.111 0.00 0.00 45.00 5.54
291 306 3.068873 GTCAGCCGATAGAGAGGTTGATT 59.931 47.826 4.47 0.00 46.57 2.57
295 310 4.279671 AGCCGATAGAGAGGTTGATTACAG 59.720 45.833 0.00 0.00 39.76 2.74
318 333 0.177141 TGGATCCGGGTGAATCGAAC 59.823 55.000 7.39 0.00 0.00 3.95
319 334 0.177141 GGATCCGGGTGAATCGAACA 59.823 55.000 0.00 0.00 0.00 3.18
353 368 2.292845 GGCAATTAGATGGCTCTTGAGC 59.707 50.000 13.69 13.69 42.22 4.26
363 378 2.669569 TCTTGAGCCCGCTTGCAC 60.670 61.111 0.00 0.00 0.00 4.57
394 409 0.597637 CGCCTAGTGTCGGCCTATTG 60.598 60.000 0.00 0.00 44.73 1.90
397 412 1.480954 CCTAGTGTCGGCCTATTGTGT 59.519 52.381 0.00 0.00 0.00 3.72
401 416 0.391130 TGTCGGCCTATTGTGTCTGC 60.391 55.000 0.00 0.00 0.00 4.26
402 417 0.391130 GTCGGCCTATTGTGTCTGCA 60.391 55.000 0.00 0.00 0.00 4.41
407 422 2.614057 GGCCTATTGTGTCTGCATGTAC 59.386 50.000 0.00 0.00 0.00 2.90
417 432 2.098117 GTCTGCATGTACCCTTTGATGC 59.902 50.000 6.64 6.64 41.34 3.91
418 433 2.025981 TCTGCATGTACCCTTTGATGCT 60.026 45.455 12.98 0.00 41.49 3.79
419 434 2.756760 CTGCATGTACCCTTTGATGCTT 59.243 45.455 12.98 0.00 41.49 3.91
420 435 2.754552 TGCATGTACCCTTTGATGCTTC 59.245 45.455 12.98 0.00 41.49 3.86
421 436 2.754552 GCATGTACCCTTTGATGCTTCA 59.245 45.455 6.39 0.00 38.53 3.02
422 437 3.382546 GCATGTACCCTTTGATGCTTCAT 59.617 43.478 2.75 0.00 38.53 2.57
423 438 4.142093 GCATGTACCCTTTGATGCTTCATT 60.142 41.667 2.75 0.00 38.53 2.57
424 439 5.067674 GCATGTACCCTTTGATGCTTCATTA 59.932 40.000 2.75 0.00 38.53 1.90
425 440 6.239120 GCATGTACCCTTTGATGCTTCATTAT 60.239 38.462 2.75 0.00 38.53 1.28
426 441 6.698008 TGTACCCTTTGATGCTTCATTATG 57.302 37.500 2.75 0.00 0.00 1.90
427 442 6.186957 TGTACCCTTTGATGCTTCATTATGT 58.813 36.000 2.75 2.60 0.00 2.29
428 443 7.342581 TGTACCCTTTGATGCTTCATTATGTA 58.657 34.615 2.75 1.75 0.00 2.29
429 444 7.998383 TGTACCCTTTGATGCTTCATTATGTAT 59.002 33.333 2.75 0.00 0.00 2.29
430 445 7.516198 ACCCTTTGATGCTTCATTATGTATC 57.484 36.000 2.75 0.00 0.00 2.24
431 446 6.491403 ACCCTTTGATGCTTCATTATGTATCC 59.509 38.462 2.75 0.00 0.00 2.59
432 447 6.491062 CCCTTTGATGCTTCATTATGTATCCA 59.509 38.462 2.75 0.00 0.00 3.41
433 448 7.177921 CCCTTTGATGCTTCATTATGTATCCAT 59.822 37.037 2.75 0.00 34.97 3.41
434 449 9.234827 CCTTTGATGCTTCATTATGTATCCATA 57.765 33.333 2.75 0.00 32.29 2.74
445 460 9.378551 TCATTATGTATCCATAAAATCTACGGC 57.621 33.333 0.00 0.00 44.49 5.68
446 461 9.383519 CATTATGTATCCATAAAATCTACGGCT 57.616 33.333 0.00 0.00 44.49 5.52
447 462 9.959721 ATTATGTATCCATAAAATCTACGGCTT 57.040 29.630 0.00 0.00 44.49 4.35
450 465 9.959721 ATGTATCCATAAAATCTACGGCTTATT 57.040 29.630 0.00 0.00 0.00 1.40
451 466 9.214957 TGTATCCATAAAATCTACGGCTTATTG 57.785 33.333 0.00 0.00 0.00 1.90
452 467 9.216117 GTATCCATAAAATCTACGGCTTATTGT 57.784 33.333 0.00 0.00 0.00 2.71
453 468 7.490962 TCCATAAAATCTACGGCTTATTGTG 57.509 36.000 0.00 0.00 0.00 3.33
454 469 7.051623 TCCATAAAATCTACGGCTTATTGTGT 58.948 34.615 0.00 0.00 0.00 3.72
455 470 7.225931 TCCATAAAATCTACGGCTTATTGTGTC 59.774 37.037 0.00 0.00 0.00 3.67
456 471 7.226720 CCATAAAATCTACGGCTTATTGTGTCT 59.773 37.037 0.00 0.00 0.00 3.41
457 472 9.256477 CATAAAATCTACGGCTTATTGTGTCTA 57.744 33.333 0.00 0.00 0.00 2.59
458 473 7.535489 AAAATCTACGGCTTATTGTGTCTAC 57.465 36.000 0.00 0.00 0.00 2.59
459 474 5.847111 ATCTACGGCTTATTGTGTCTACA 57.153 39.130 0.00 0.00 34.31 2.74
460 475 5.847111 TCTACGGCTTATTGTGTCTACAT 57.153 39.130 0.00 0.00 36.53 2.29
461 476 5.588240 TCTACGGCTTATTGTGTCTACATG 58.412 41.667 0.00 0.00 36.53 3.21
462 477 4.202245 ACGGCTTATTGTGTCTACATGT 57.798 40.909 2.69 2.69 36.53 3.21
463 478 5.333299 ACGGCTTATTGTGTCTACATGTA 57.667 39.130 5.25 5.25 36.53 2.29
464 479 5.107133 ACGGCTTATTGTGTCTACATGTAC 58.893 41.667 0.08 0.00 36.53 2.90
465 480 4.506654 CGGCTTATTGTGTCTACATGTACC 59.493 45.833 0.08 0.00 36.53 3.34
466 481 4.814771 GGCTTATTGTGTCTACATGTACCC 59.185 45.833 0.08 0.00 36.53 3.69
467 482 5.396436 GGCTTATTGTGTCTACATGTACCCT 60.396 44.000 0.08 0.00 36.53 4.34
468 483 6.113411 GCTTATTGTGTCTACATGTACCCTT 58.887 40.000 0.08 0.00 36.53 3.95
469 484 6.598064 GCTTATTGTGTCTACATGTACCCTTT 59.402 38.462 0.08 0.00 36.53 3.11
470 485 7.414098 GCTTATTGTGTCTACATGTACCCTTTG 60.414 40.741 0.08 0.00 36.53 2.77
471 486 5.554437 TTGTGTCTACATGTACCCTTTGA 57.446 39.130 0.08 0.00 36.53 2.69
472 487 5.755409 TGTGTCTACATGTACCCTTTGAT 57.245 39.130 0.08 0.00 0.00 2.57
473 488 5.487433 TGTGTCTACATGTACCCTTTGATG 58.513 41.667 0.08 0.00 0.00 3.07
484 499 2.494870 ACCCTTTGATGCTTCATTCTGC 59.505 45.455 2.75 0.00 0.00 4.26
501 516 8.985315 TCATTCTGCATCCATAAAATCTACTT 57.015 30.769 0.00 0.00 0.00 2.24
507 522 5.409826 GCATCCATAAAATCTACTTCCTCCG 59.590 44.000 0.00 0.00 0.00 4.63
554 569 8.079203 AGATCACTTGCGTACTCTTTATATCAG 58.921 37.037 0.00 0.00 0.00 2.90
578 593 9.817809 CAGTACAATGTTCATACCACTAATACT 57.182 33.333 0.00 0.00 0.00 2.12
712 762 2.048597 CCACGCACCACTCGCTTA 60.049 61.111 0.00 0.00 0.00 3.09
720 770 1.255667 ACCACTCGCTTACCCATCGT 61.256 55.000 0.00 0.00 0.00 3.73
752 802 1.524008 GGAAAAGCCCAACGGACAGG 61.524 60.000 0.00 0.00 0.00 4.00
763 813 2.047179 GGACAGGGACGCCTTGAC 60.047 66.667 13.42 8.06 34.05 3.18
769 819 2.737376 GGACGCCTTGACACGACC 60.737 66.667 0.00 0.00 36.99 4.79
888 939 0.813610 CAACCAACACCGAGCTCACA 60.814 55.000 15.40 0.00 0.00 3.58
1108 1197 1.675552 CAAGAACCCCAAACAGTCGT 58.324 50.000 0.00 0.00 0.00 4.34
1109 1198 1.602377 CAAGAACCCCAAACAGTCGTC 59.398 52.381 0.00 0.00 0.00 4.20
1110 1199 0.249741 AGAACCCCAAACAGTCGTCG 60.250 55.000 0.00 0.00 0.00 5.12
1254 1343 4.008933 GGGATCATCGAGGGCCGG 62.009 72.222 0.00 0.00 39.14 6.13
1489 1581 0.032678 CCCCACCGAGATCAAGATCG 59.967 60.000 4.54 0.00 42.48 3.69
1491 1583 1.000827 CCCACCGAGATCAAGATCGAG 60.001 57.143 3.84 3.32 42.48 4.04
1499 1591 2.886523 AGATCAAGATCGAGGAGCTCAG 59.113 50.000 17.19 6.40 42.48 3.35
1513 1605 0.528470 GCTCAGCGAGGTAAGTGACT 59.472 55.000 7.50 0.00 0.00 3.41
1523 1615 5.035443 CGAGGTAAGTGACTAGCATAACAC 58.965 45.833 0.00 0.00 0.00 3.32
1555 1661 2.333926 CTCGTTCGACTTACAATGGCA 58.666 47.619 0.00 0.00 0.00 4.92
1558 1664 1.127951 GTTCGACTTACAATGGCACCG 59.872 52.381 0.00 0.00 0.00 4.94
1561 1667 1.803334 GACTTACAATGGCACCGTGA 58.197 50.000 1.65 0.00 0.00 4.35
1574 1692 2.079158 CACCGTGATTGATTGCTCTGT 58.921 47.619 0.00 0.00 0.00 3.41
1576 1694 2.744202 ACCGTGATTGATTGCTCTGTTC 59.256 45.455 0.00 0.00 0.00 3.18
1577 1695 2.096496 CCGTGATTGATTGCTCTGTTCC 59.904 50.000 0.00 0.00 0.00 3.62
1578 1696 2.743664 CGTGATTGATTGCTCTGTTCCA 59.256 45.455 0.00 0.00 0.00 3.53
1579 1697 3.376234 CGTGATTGATTGCTCTGTTCCAT 59.624 43.478 0.00 0.00 0.00 3.41
1580 1698 4.495349 CGTGATTGATTGCTCTGTTCCATC 60.495 45.833 0.00 0.00 0.00 3.51
1581 1699 3.624410 TGATTGATTGCTCTGTTCCATCG 59.376 43.478 0.00 0.00 0.00 3.84
1582 1700 1.372582 TGATTGCTCTGTTCCATCGC 58.627 50.000 0.00 0.00 0.00 4.58
1583 1701 0.659957 GATTGCTCTGTTCCATCGCC 59.340 55.000 0.00 0.00 0.00 5.54
1584 1702 0.035152 ATTGCTCTGTTCCATCGCCA 60.035 50.000 0.00 0.00 0.00 5.69
1586 1704 0.745486 TGCTCTGTTCCATCGCCATG 60.745 55.000 0.00 0.00 0.00 3.66
1587 1705 0.745845 GCTCTGTTCCATCGCCATGT 60.746 55.000 0.00 0.00 0.00 3.21
1589 1707 1.026182 TCTGTTCCATCGCCATGTGC 61.026 55.000 0.00 0.00 0.00 4.57
1620 1740 0.693049 GGAAGAAGCTGGTGAAGGGA 59.307 55.000 0.00 0.00 0.00 4.20
1623 1743 1.377856 GAAGCTGGTGAAGGGAGGC 60.378 63.158 0.00 0.00 0.00 4.70
1857 1977 0.673333 TCGCGCTCAACACCATCAAT 60.673 50.000 5.56 0.00 0.00 2.57
1860 1980 1.730121 GCGCTCAACACCATCAATGTG 60.730 52.381 0.00 0.00 0.00 3.21
1961 2081 1.233285 CCTAAGCAGGCCATGATCGC 61.233 60.000 5.01 0.00 34.35 4.58
2029 2149 6.266323 TGTTCATAAGATCGTAGCTGACTTC 58.734 40.000 0.00 0.00 0.00 3.01
2103 2224 2.737039 GCTTTTTGTGTTCCTTTGCCGA 60.737 45.455 0.00 0.00 0.00 5.54
2104 2225 3.516615 CTTTTTGTGTTCCTTTGCCGAA 58.483 40.909 0.00 0.00 0.00 4.30
2105 2226 3.810310 TTTTGTGTTCCTTTGCCGAAT 57.190 38.095 0.00 0.00 0.00 3.34
2106 2227 4.920640 TTTTGTGTTCCTTTGCCGAATA 57.079 36.364 0.00 0.00 0.00 1.75
2107 2228 4.920640 TTTGTGTTCCTTTGCCGAATAA 57.079 36.364 0.00 0.00 0.00 1.40
2108 2229 3.907894 TGTGTTCCTTTGCCGAATAAC 57.092 42.857 0.00 0.00 0.00 1.89
2109 2230 3.482436 TGTGTTCCTTTGCCGAATAACT 58.518 40.909 0.00 0.00 0.00 2.24
2135 2256 1.523938 GCTTCTCGCCCCGCTTTAT 60.524 57.895 0.00 0.00 0.00 1.40
2136 2257 0.249741 GCTTCTCGCCCCGCTTTATA 60.250 55.000 0.00 0.00 0.00 0.98
2137 2258 1.608283 GCTTCTCGCCCCGCTTTATAT 60.608 52.381 0.00 0.00 0.00 0.86
2138 2259 2.353406 GCTTCTCGCCCCGCTTTATATA 60.353 50.000 0.00 0.00 0.00 0.86
2139 2260 3.679083 GCTTCTCGCCCCGCTTTATATAT 60.679 47.826 0.00 0.00 0.00 0.86
2167 2288 2.033299 AGCAACGACCAAACATCACAAG 59.967 45.455 0.00 0.00 0.00 3.16
2174 2295 1.130955 CAAACATCACAAGCCAACGC 58.869 50.000 0.00 0.00 0.00 4.84
2197 2318 3.276846 AGCACCAAACACGACGCC 61.277 61.111 0.00 0.00 0.00 5.68
2198 2319 4.659874 GCACCAAACACGACGCCG 62.660 66.667 0.00 0.00 42.50 6.46
2209 2330 1.154980 CGACGCCGTAACAAACACG 60.155 57.895 0.00 0.00 39.10 4.49
2217 2338 2.032377 CCGTAACAAACACGATGCAAGT 60.032 45.455 0.00 0.00 41.91 3.16
2220 2341 4.605594 CGTAACAAACACGATGCAAGTTAC 59.394 41.667 0.00 0.00 41.91 2.50
2225 2346 3.120321 ACACGATGCAAGTTACAAGGA 57.880 42.857 0.00 0.00 0.00 3.36
2247 2368 2.964464 TGCCAAAGATCAACCACAACAT 59.036 40.909 0.00 0.00 0.00 2.71
2250 2371 3.056607 CCAAAGATCAACCACAACATCCC 60.057 47.826 0.00 0.00 0.00 3.85
2253 2374 3.359033 AGATCAACCACAACATCCCATG 58.641 45.455 0.00 0.00 0.00 3.66
2266 2387 0.824109 TCCCATGCAACTCCGAGTAG 59.176 55.000 0.26 0.00 0.00 2.57
2276 2397 4.619863 GCAACTCCGAGTAGACCACAAATA 60.620 45.833 0.26 0.00 0.00 1.40
2279 2400 4.398673 ACTCCGAGTAGACCACAAATAGAC 59.601 45.833 0.00 0.00 0.00 2.59
2280 2401 3.376234 TCCGAGTAGACCACAAATAGACG 59.624 47.826 0.00 0.00 0.00 4.18
2290 2411 3.483574 CCACAAATAGACGCTAAGCAACG 60.484 47.826 0.00 0.00 0.00 4.10
2311 2432 0.259065 TACAGAGTCGATGGAGCCCT 59.741 55.000 0.00 0.00 0.00 5.19
2336 2457 0.784778 GTGAAAGACACCGCGAAGAG 59.215 55.000 8.23 0.00 43.05 2.85
2375 2496 2.509336 CCGTGAGCTACAAGGCGG 60.509 66.667 5.51 0.00 40.77 6.13
2392 2514 1.363744 CGGTGCCTTCAAGAGATCAC 58.636 55.000 0.00 0.00 0.00 3.06
2400 2522 0.526211 TCAAGAGATCACGACACCGG 59.474 55.000 0.00 0.00 40.78 5.28
2402 2524 0.811915 AAGAGATCACGACACCGGAG 59.188 55.000 9.46 1.26 40.78 4.63
2422 2544 2.928741 GCCGCTACTACCCGATCCC 61.929 68.421 0.00 0.00 0.00 3.85
2444 2566 7.642186 TCCCAAAGGATCAAGATTTTCATCTA 58.358 34.615 0.00 0.00 36.53 1.98
2445 2567 7.776969 TCCCAAAGGATCAAGATTTTCATCTAG 59.223 37.037 0.00 0.00 36.53 2.43
2447 2569 8.838365 CCAAAGGATCAAGATTTTCATCTAGAG 58.162 37.037 0.00 0.00 39.00 2.43
2454 2576 4.355437 AGATTTTCATCTAGAGCACGACG 58.645 43.478 0.00 0.00 38.06 5.12
2463 2585 1.519234 GAGCACGACGCATGATCCA 60.519 57.895 0.00 0.00 46.13 3.41
2464 2586 1.079197 AGCACGACGCATGATCCAA 60.079 52.632 0.00 0.00 46.13 3.53
2466 2588 0.521242 GCACGACGCATGATCCAAAC 60.521 55.000 0.00 0.00 41.79 2.93
2467 2589 0.096976 CACGACGCATGATCCAAACC 59.903 55.000 0.00 0.00 0.00 3.27
2473 2595 1.402720 CGCATGATCCAAACCAACCAC 60.403 52.381 0.00 0.00 0.00 4.16
2474 2596 1.617850 GCATGATCCAAACCAACCACA 59.382 47.619 0.00 0.00 0.00 4.17
2476 2598 3.652274 CATGATCCAAACCAACCACAAC 58.348 45.455 0.00 0.00 0.00 3.32
2477 2599 2.739943 TGATCCAAACCAACCACAACA 58.260 42.857 0.00 0.00 0.00 3.33
2505 2627 5.655488 CTTCAAGAAGTAGATGACGTCCAT 58.345 41.667 14.12 6.65 37.26 3.41
2525 2647 3.356639 GACGTCGCCTCCATCAGCA 62.357 63.158 0.00 0.00 0.00 4.41
2532 2654 0.605860 GCCTCCATCAGCATAGCCAG 60.606 60.000 0.00 0.00 0.00 4.85
2533 2655 0.605860 CCTCCATCAGCATAGCCAGC 60.606 60.000 0.00 0.00 0.00 4.85
2534 2656 0.949588 CTCCATCAGCATAGCCAGCG 60.950 60.000 0.00 0.00 37.01 5.18
2535 2657 2.614446 CCATCAGCATAGCCAGCGC 61.614 63.158 0.00 0.00 37.01 5.92
2560 2683 1.106944 AAGGTTTTCACCCTGGCACG 61.107 55.000 0.00 0.00 45.63 5.34
2581 2704 0.037326 TCCACATTCGGTCAGTGAGC 60.037 55.000 12.41 12.41 35.33 4.26
2588 2711 3.987404 GGTCAGTGAGCGGCAAAT 58.013 55.556 6.57 0.00 0.00 2.32
2589 2712 3.153024 GGTCAGTGAGCGGCAAATA 57.847 52.632 6.57 0.00 0.00 1.40
2591 2714 2.017049 GGTCAGTGAGCGGCAAATAAT 58.983 47.619 6.57 0.00 0.00 1.28
2600 2723 4.036734 TGAGCGGCAAATAATGAAATCTCC 59.963 41.667 1.45 0.00 0.00 3.71
2602 2725 3.300009 CGGCAAATAATGAAATCTCCGC 58.700 45.455 0.00 0.00 0.00 5.54
2621 2744 0.532862 CCATACCACCATCACGGAGC 60.533 60.000 0.00 0.00 38.63 4.70
2622 2745 0.875908 CATACCACCATCACGGAGCG 60.876 60.000 0.00 0.00 38.63 5.03
2626 2749 4.015406 ACCATCACGGAGCGCCAA 62.015 61.111 7.44 0.00 38.63 4.52
2628 2751 2.434884 CATCACGGAGCGCCAACT 60.435 61.111 7.44 0.00 0.00 3.16
2637 2760 0.739813 GAGCGCCAACTACGAACCAT 60.740 55.000 2.29 0.00 0.00 3.55
2644 2767 2.355197 CAACTACGAACCATCATGCCA 58.645 47.619 0.00 0.00 0.00 4.92
2651 2774 1.889010 AACCATCATGCCACCCCCAT 61.889 55.000 0.00 0.00 0.00 4.00
2653 2776 1.835267 CATCATGCCACCCCCATGG 60.835 63.158 4.14 4.14 40.29 3.66
2668 2791 2.346766 CATGGCCATGGTAACTAGCA 57.653 50.000 34.31 0.00 38.16 3.49
2713 2836 2.107141 GAGCACCGCGGCTTCTAT 59.893 61.111 28.58 5.15 45.99 1.98
2725 2848 1.972660 GCTTCTATCACCAGGGCCGT 61.973 60.000 0.00 0.00 0.00 5.68
2733 2856 3.083349 CCAGGGCCGTCATCCAGA 61.083 66.667 0.00 0.00 0.00 3.86
2740 2863 1.141881 CCGTCATCCAGAAGACCGG 59.858 63.158 0.00 0.00 0.00 5.28
2743 2866 1.612146 TCATCCAGAAGACCGGGCA 60.612 57.895 11.69 0.00 0.00 5.36
2744 2867 0.982852 TCATCCAGAAGACCGGGCAT 60.983 55.000 11.69 0.00 0.00 4.40
2745 2868 0.758734 CATCCAGAAGACCGGGCATA 59.241 55.000 11.69 0.00 0.00 3.14
2746 2869 0.759346 ATCCAGAAGACCGGGCATAC 59.241 55.000 11.69 0.00 0.00 2.39
2747 2870 0.325296 TCCAGAAGACCGGGCATACT 60.325 55.000 11.69 1.78 0.00 2.12
2748 2871 0.105039 CCAGAAGACCGGGCATACTC 59.895 60.000 11.69 0.00 0.00 2.59
2749 2872 0.249073 CAGAAGACCGGGCATACTCG 60.249 60.000 11.69 0.00 0.00 4.18
2750 2873 0.395311 AGAAGACCGGGCATACTCGA 60.395 55.000 11.69 0.00 0.00 4.04
2751 2874 0.030908 GAAGACCGGGCATACTCGAG 59.969 60.000 11.69 11.84 0.00 4.04
2752 2875 2.017559 AAGACCGGGCATACTCGAGC 62.018 60.000 11.69 0.00 0.00 5.03
2760 2883 0.106708 GCATACTCGAGCCCATCCAA 59.893 55.000 13.61 0.00 0.00 3.53
2780 2903 3.364442 CCACGGGCAAAGCATTGA 58.636 55.556 5.73 0.00 38.94 2.57
2793 2916 2.575532 AGCATTGATCAACATACCCCG 58.424 47.619 11.07 0.00 0.00 5.73
2797 2920 0.462375 TGATCAACATACCCCGACCG 59.538 55.000 0.00 0.00 0.00 4.79
2798 2921 0.748450 GATCAACATACCCCGACCGA 59.252 55.000 0.00 0.00 0.00 4.69
2799 2922 1.343465 GATCAACATACCCCGACCGAT 59.657 52.381 0.00 0.00 0.00 4.18
2800 2923 2.070305 TCAACATACCCCGACCGATA 57.930 50.000 0.00 0.00 0.00 2.92
2801 2924 2.600790 TCAACATACCCCGACCGATAT 58.399 47.619 0.00 0.00 0.00 1.63
2802 2925 2.297880 TCAACATACCCCGACCGATATG 59.702 50.000 0.00 0.00 0.00 1.78
2803 2926 1.263356 ACATACCCCGACCGATATGG 58.737 55.000 10.62 0.00 46.41 2.74
2804 2927 0.108329 CATACCCCGACCGATATGGC 60.108 60.000 0.00 0.00 43.94 4.40
2805 2928 1.262640 ATACCCCGACCGATATGGCC 61.263 60.000 0.00 0.00 43.94 5.36
2806 2929 2.659946 TACCCCGACCGATATGGCCA 62.660 60.000 8.56 8.56 43.94 5.36
2807 2930 2.592993 CCCCGACCGATATGGCCAT 61.593 63.158 24.45 24.45 43.94 4.40
2808 2931 1.375908 CCCGACCGATATGGCCATG 60.376 63.158 29.04 13.91 43.94 3.66
2809 2932 1.375908 CCGACCGATATGGCCATGG 60.376 63.158 29.04 22.49 43.94 3.66
2810 2933 2.034879 CGACCGATATGGCCATGGC 61.035 63.158 29.47 29.47 43.94 4.40
2811 2934 2.032528 ACCGATATGGCCATGGCG 59.967 61.111 29.90 27.25 43.94 5.69
2812 2935 2.347114 CCGATATGGCCATGGCGA 59.653 61.111 31.33 27.33 43.06 5.54
2813 2936 1.078214 CCGATATGGCCATGGCGAT 60.078 57.895 32.99 32.99 43.06 4.58
2814 2937 1.091771 CCGATATGGCCATGGCGATC 61.092 60.000 34.21 28.63 43.06 3.69
2815 2938 0.391528 CGATATGGCCATGGCGATCA 60.392 55.000 34.21 24.67 43.06 2.92
2816 2939 1.376543 GATATGGCCATGGCGATCAG 58.623 55.000 34.21 0.00 43.06 2.90
2817 2940 0.034767 ATATGGCCATGGCGATCAGG 60.035 55.000 34.21 0.00 43.06 3.86
2818 2941 1.126948 TATGGCCATGGCGATCAGGA 61.127 55.000 34.21 16.79 43.06 3.86
2819 2942 2.592861 GGCCATGGCGATCAGGAC 60.593 66.667 29.90 10.13 43.06 3.85
2820 2943 2.592861 GCCATGGCGATCAGGACC 60.593 66.667 23.48 0.00 0.00 4.46
2821 2944 2.910360 CCATGGCGATCAGGACCA 59.090 61.111 0.00 0.00 37.99 4.02
2822 2945 1.227764 CCATGGCGATCAGGACCAG 60.228 63.158 0.00 0.00 36.78 4.00
2823 2946 1.227764 CATGGCGATCAGGACCAGG 60.228 63.158 0.00 0.00 36.78 4.45
2824 2947 1.383109 ATGGCGATCAGGACCAGGA 60.383 57.895 0.00 0.00 36.78 3.86
2825 2948 1.406065 ATGGCGATCAGGACCAGGAG 61.406 60.000 0.00 0.00 36.78 3.69
2826 2949 2.107953 GCGATCAGGACCAGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
2827 2950 2.725312 GCGATCAGGACCAGGAGCA 61.725 63.158 0.00 0.00 0.00 4.26
2828 2951 1.900351 CGATCAGGACCAGGAGCAA 59.100 57.895 0.00 0.00 0.00 3.91
2829 2952 0.460987 CGATCAGGACCAGGAGCAAC 60.461 60.000 0.00 0.00 0.00 4.17
2830 2953 0.908198 GATCAGGACCAGGAGCAACT 59.092 55.000 0.00 0.00 0.00 3.16
2831 2954 2.111384 GATCAGGACCAGGAGCAACTA 58.889 52.381 0.00 0.00 0.00 2.24
2832 2955 1.561643 TCAGGACCAGGAGCAACTAG 58.438 55.000 0.00 0.00 0.00 2.57
2833 2956 0.539051 CAGGACCAGGAGCAACTAGG 59.461 60.000 0.00 0.00 0.00 3.02
2834 2957 1.222113 GGACCAGGAGCAACTAGGC 59.778 63.158 0.00 0.00 0.00 3.93
2835 2958 1.222113 GACCAGGAGCAACTAGGCC 59.778 63.158 0.00 0.00 0.00 5.19
2836 2959 2.187946 CCAGGAGCAACTAGGCCG 59.812 66.667 0.00 0.00 0.00 6.13
2837 2960 2.359169 CCAGGAGCAACTAGGCCGA 61.359 63.158 0.00 0.00 0.00 5.54
2838 2961 1.142748 CAGGAGCAACTAGGCCGAG 59.857 63.158 11.86 11.86 0.00 4.63
2839 2962 2.060980 AGGAGCAACTAGGCCGAGG 61.061 63.158 17.90 4.47 0.00 4.63
2840 2963 2.501610 GAGCAACTAGGCCGAGGG 59.498 66.667 17.90 9.89 0.00 4.30
2841 2964 2.038975 AGCAACTAGGCCGAGGGA 59.961 61.111 17.90 0.00 0.00 4.20
2842 2965 1.612442 AGCAACTAGGCCGAGGGAA 60.612 57.895 17.90 0.00 0.00 3.97
2843 2966 1.198759 AGCAACTAGGCCGAGGGAAA 61.199 55.000 17.90 0.00 0.00 3.13
2844 2967 0.744771 GCAACTAGGCCGAGGGAAAG 60.745 60.000 17.90 3.22 0.00 2.62
2845 2968 0.107654 CAACTAGGCCGAGGGAAAGG 60.108 60.000 17.90 0.00 0.00 3.11
2846 2969 0.546988 AACTAGGCCGAGGGAAAGGT 60.547 55.000 17.90 0.00 0.00 3.50
2847 2970 1.265454 ACTAGGCCGAGGGAAAGGTG 61.265 60.000 17.90 0.00 0.00 4.00
2848 2971 0.976073 CTAGGCCGAGGGAAAGGTGA 60.976 60.000 4.68 0.00 0.00 4.02
2849 2972 0.545787 TAGGCCGAGGGAAAGGTGAA 60.546 55.000 0.00 0.00 0.00 3.18
2850 2973 1.074248 GGCCGAGGGAAAGGTGAAA 59.926 57.895 0.00 0.00 0.00 2.69
2851 2974 0.960861 GGCCGAGGGAAAGGTGAAAG 60.961 60.000 0.00 0.00 0.00 2.62
2852 2975 0.250770 GCCGAGGGAAAGGTGAAAGT 60.251 55.000 0.00 0.00 0.00 2.66
2853 2976 1.523758 CCGAGGGAAAGGTGAAAGTG 58.476 55.000 0.00 0.00 0.00 3.16
2854 2977 0.875059 CGAGGGAAAGGTGAAAGTGC 59.125 55.000 0.00 0.00 0.00 4.40
2855 2978 1.813862 CGAGGGAAAGGTGAAAGTGCA 60.814 52.381 0.00 0.00 0.00 4.57
2856 2979 1.609072 GAGGGAAAGGTGAAAGTGCAC 59.391 52.381 9.40 9.40 38.05 4.57
2857 2980 0.310854 GGGAAAGGTGAAAGTGCACG 59.689 55.000 12.01 0.00 39.66 5.34
2858 2981 1.305201 GGAAAGGTGAAAGTGCACGA 58.695 50.000 12.01 0.00 39.66 4.35
2859 2982 1.264288 GGAAAGGTGAAAGTGCACGAG 59.736 52.381 12.01 0.00 39.66 4.18
2860 2983 1.940613 GAAAGGTGAAAGTGCACGAGT 59.059 47.619 12.01 0.00 39.66 4.18
2861 2984 2.902705 AAGGTGAAAGTGCACGAGTA 57.097 45.000 12.01 0.00 39.66 2.59
2862 2985 2.440539 AGGTGAAAGTGCACGAGTAG 57.559 50.000 12.01 0.00 39.66 2.57
2863 2986 1.961394 AGGTGAAAGTGCACGAGTAGA 59.039 47.619 12.01 0.00 39.66 2.59
2864 2987 2.364324 AGGTGAAAGTGCACGAGTAGAA 59.636 45.455 12.01 0.00 39.66 2.10
2865 2988 2.475487 GGTGAAAGTGCACGAGTAGAAC 59.525 50.000 12.01 4.97 39.66 3.01
2866 2989 3.381949 GTGAAAGTGCACGAGTAGAACT 58.618 45.455 12.01 0.00 0.00 3.01
2867 2990 3.425858 GTGAAAGTGCACGAGTAGAACTC 59.574 47.826 12.01 0.00 41.71 3.01
2877 3000 3.637998 GAGTAGAACTCGTCCACAACA 57.362 47.619 0.00 0.00 35.28 3.33
2878 3001 4.175787 GAGTAGAACTCGTCCACAACAT 57.824 45.455 0.00 0.00 35.28 2.71
2879 3002 3.914312 AGTAGAACTCGTCCACAACATG 58.086 45.455 0.00 0.00 0.00 3.21
2880 3003 1.512926 AGAACTCGTCCACAACATGC 58.487 50.000 0.00 0.00 0.00 4.06
2881 3004 1.202639 AGAACTCGTCCACAACATGCA 60.203 47.619 0.00 0.00 0.00 3.96
2882 3005 0.944386 AACTCGTCCACAACATGCAC 59.056 50.000 0.00 0.00 0.00 4.57
2883 3006 0.884704 ACTCGTCCACAACATGCACC 60.885 55.000 0.00 0.00 0.00 5.01
2884 3007 1.577328 CTCGTCCACAACATGCACCC 61.577 60.000 0.00 0.00 0.00 4.61
2885 3008 2.625823 CGTCCACAACATGCACCCC 61.626 63.158 0.00 0.00 0.00 4.95
2886 3009 1.228552 GTCCACAACATGCACCCCT 60.229 57.895 0.00 0.00 0.00 4.79
2887 3010 0.037590 GTCCACAACATGCACCCCTA 59.962 55.000 0.00 0.00 0.00 3.53
2888 3011 0.998928 TCCACAACATGCACCCCTAT 59.001 50.000 0.00 0.00 0.00 2.57
2889 3012 1.105457 CCACAACATGCACCCCTATG 58.895 55.000 0.00 0.00 0.00 2.23
2890 3013 0.457035 CACAACATGCACCCCTATGC 59.543 55.000 0.00 0.00 46.32 3.14
2891 3014 0.684153 ACAACATGCACCCCTATGCC 60.684 55.000 0.00 0.00 45.50 4.40
2892 3015 1.453745 AACATGCACCCCTATGCCG 60.454 57.895 0.00 0.00 45.50 5.69
2893 3016 2.595463 CATGCACCCCTATGCCGG 60.595 66.667 0.00 0.00 45.50 6.13
2894 3017 3.096495 ATGCACCCCTATGCCGGT 61.096 61.111 1.90 0.00 45.50 5.28
2914 3037 4.473520 CGAGCGGCCCAACCTCAT 62.474 66.667 0.00 0.00 35.61 2.90
2915 3038 2.514824 GAGCGGCCCAACCTCATC 60.515 66.667 0.00 0.00 35.61 2.92
2916 3039 3.329542 GAGCGGCCCAACCTCATCA 62.330 63.158 0.00 0.00 35.61 3.07
2917 3040 2.825836 GCGGCCCAACCTCATCAG 60.826 66.667 0.00 0.00 35.61 2.90
2918 3041 2.989639 CGGCCCAACCTCATCAGA 59.010 61.111 0.00 0.00 35.61 3.27
2919 3042 1.153289 CGGCCCAACCTCATCAGAG 60.153 63.158 0.00 0.00 41.72 3.35
2920 3043 1.452833 GGCCCAACCTCATCAGAGC 60.453 63.158 0.00 0.00 40.68 4.09
2921 3044 1.452833 GCCCAACCTCATCAGAGCC 60.453 63.158 0.00 0.00 40.68 4.70
2922 3045 1.993653 CCCAACCTCATCAGAGCCA 59.006 57.895 0.00 0.00 40.68 4.75
2923 3046 0.549950 CCCAACCTCATCAGAGCCAT 59.450 55.000 0.00 0.00 40.68 4.40
2924 3047 1.476471 CCCAACCTCATCAGAGCCATC 60.476 57.143 0.00 0.00 40.68 3.51
2925 3048 1.476471 CCAACCTCATCAGAGCCATCC 60.476 57.143 0.00 0.00 40.68 3.51
2926 3049 1.211212 CAACCTCATCAGAGCCATCCA 59.789 52.381 0.00 0.00 40.68 3.41
2927 3050 1.817087 ACCTCATCAGAGCCATCCAT 58.183 50.000 0.00 0.00 40.68 3.41
2928 3051 1.698532 ACCTCATCAGAGCCATCCATC 59.301 52.381 0.00 0.00 40.68 3.51
2929 3052 1.003349 CCTCATCAGAGCCATCCATCC 59.997 57.143 0.00 0.00 40.68 3.51
2930 3053 1.003349 CTCATCAGAGCCATCCATCCC 59.997 57.143 0.00 0.00 34.61 3.85
2931 3054 0.037877 CATCAGAGCCATCCATCCCC 59.962 60.000 0.00 0.00 0.00 4.81
2932 3055 1.138863 ATCAGAGCCATCCATCCCCC 61.139 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.651803 AATCCATAGCTAGACACGAGC 57.348 47.619 0.00 0.00 40.42 5.03
79 81 0.328450 TCCCATCACCCTAGGGCATT 60.328 55.000 28.88 9.54 42.52 3.56
80 82 0.328450 TTCCCATCACCCTAGGGCAT 60.328 55.000 28.88 17.15 42.52 4.40
98 100 8.434589 TGAAATCCAAGGGAAACAAAGATATT 57.565 30.769 0.00 0.00 34.34 1.28
100 102 6.437162 CCTGAAATCCAAGGGAAACAAAGATA 59.563 38.462 0.00 0.00 34.34 1.98
135 137 3.223435 TGGGGAATTGTTCGTTGCTTAA 58.777 40.909 0.00 0.00 0.00 1.85
136 138 2.865079 TGGGGAATTGTTCGTTGCTTA 58.135 42.857 0.00 0.00 0.00 3.09
137 139 1.698506 TGGGGAATTGTTCGTTGCTT 58.301 45.000 0.00 0.00 0.00 3.91
154 157 4.778213 TCTAGAATCTCCAAACCCATGG 57.222 45.455 4.14 4.14 42.12 3.66
219 222 0.039180 TCGAGGGCTCTTCCACACTA 59.961 55.000 0.00 0.00 36.21 2.74
220 223 1.228894 TCGAGGGCTCTTCCACACT 60.229 57.895 0.00 0.00 36.21 3.55
256 266 0.860618 GGCTGACGACGTAACGCTAG 60.861 60.000 0.00 0.00 36.70 3.42
269 284 2.025155 TCAACCTCTCTATCGGCTGAC 58.975 52.381 0.00 0.00 0.00 3.51
277 292 6.841229 TCCATCACTGTAATCAACCTCTCTAT 59.159 38.462 0.00 0.00 0.00 1.98
291 306 1.119684 CACCCGGATCCATCACTGTA 58.880 55.000 13.41 0.00 0.00 2.74
295 310 1.873903 CGATTCACCCGGATCCATCAC 60.874 57.143 13.41 0.00 0.00 3.06
318 333 1.226916 TTGCCTTGCACGCAAACTG 60.227 52.632 16.07 0.00 43.00 3.16
319 334 3.205395 TTGCCTTGCACGCAAACT 58.795 50.000 16.07 0.00 43.00 2.66
394 409 2.778299 TCAAAGGGTACATGCAGACAC 58.222 47.619 0.00 0.00 0.00 3.67
397 412 2.025981 AGCATCAAAGGGTACATGCAGA 60.026 45.455 13.99 0.00 43.48 4.26
401 416 5.587388 AATGAAGCATCAAAGGGTACATG 57.413 39.130 0.00 0.00 39.49 3.21
402 417 6.835488 ACATAATGAAGCATCAAAGGGTACAT 59.165 34.615 0.00 0.00 39.49 2.29
407 422 6.491062 TGGATACATAATGAAGCATCAAAGGG 59.509 38.462 0.00 0.00 46.17 3.95
426 441 9.216117 ACAATAAGCCGTAGATTTTATGGATAC 57.784 33.333 0.00 0.00 0.00 2.24
427 442 9.214957 CACAATAAGCCGTAGATTTTATGGATA 57.785 33.333 0.00 0.00 0.00 2.59
428 443 7.719633 ACACAATAAGCCGTAGATTTTATGGAT 59.280 33.333 0.00 0.00 0.00 3.41
429 444 7.051623 ACACAATAAGCCGTAGATTTTATGGA 58.948 34.615 0.00 0.00 0.00 3.41
430 445 7.226720 AGACACAATAAGCCGTAGATTTTATGG 59.773 37.037 0.00 0.00 0.00 2.74
431 446 8.142994 AGACACAATAAGCCGTAGATTTTATG 57.857 34.615 0.00 0.00 0.00 1.90
432 447 9.257651 GTAGACACAATAAGCCGTAGATTTTAT 57.742 33.333 0.00 0.00 0.00 1.40
433 448 8.252417 TGTAGACACAATAAGCCGTAGATTTTA 58.748 33.333 0.00 0.00 0.00 1.52
434 449 7.101054 TGTAGACACAATAAGCCGTAGATTTT 58.899 34.615 0.00 0.00 0.00 1.82
435 450 6.636705 TGTAGACACAATAAGCCGTAGATTT 58.363 36.000 0.00 0.00 0.00 2.17
436 451 6.216801 TGTAGACACAATAAGCCGTAGATT 57.783 37.500 0.00 0.00 0.00 2.40
437 452 5.847111 TGTAGACACAATAAGCCGTAGAT 57.153 39.130 0.00 0.00 0.00 1.98
438 453 5.126545 ACATGTAGACACAATAAGCCGTAGA 59.873 40.000 0.00 0.00 38.42 2.59
439 454 5.348986 ACATGTAGACACAATAAGCCGTAG 58.651 41.667 0.00 0.00 38.42 3.51
440 455 5.333299 ACATGTAGACACAATAAGCCGTA 57.667 39.130 0.00 0.00 38.42 4.02
441 456 4.202245 ACATGTAGACACAATAAGCCGT 57.798 40.909 0.00 0.00 38.42 5.68
442 457 4.506654 GGTACATGTAGACACAATAAGCCG 59.493 45.833 5.62 0.00 38.42 5.52
443 458 4.814771 GGGTACATGTAGACACAATAAGCC 59.185 45.833 5.62 0.00 38.42 4.35
444 459 5.671493 AGGGTACATGTAGACACAATAAGC 58.329 41.667 5.62 0.00 38.42 3.09
445 460 7.822334 TCAAAGGGTACATGTAGACACAATAAG 59.178 37.037 5.62 0.00 38.42 1.73
446 461 7.681679 TCAAAGGGTACATGTAGACACAATAA 58.318 34.615 5.62 0.00 38.42 1.40
447 462 7.247456 TCAAAGGGTACATGTAGACACAATA 57.753 36.000 5.62 0.00 38.42 1.90
448 463 6.121776 TCAAAGGGTACATGTAGACACAAT 57.878 37.500 5.62 0.00 38.42 2.71
449 464 5.554437 TCAAAGGGTACATGTAGACACAA 57.446 39.130 5.62 0.00 38.42 3.33
450 465 5.487433 CATCAAAGGGTACATGTAGACACA 58.513 41.667 5.62 0.00 39.52 3.72
451 466 4.332819 GCATCAAAGGGTACATGTAGACAC 59.667 45.833 5.62 0.00 0.00 3.67
452 467 4.225042 AGCATCAAAGGGTACATGTAGACA 59.775 41.667 5.62 0.00 0.00 3.41
453 468 4.770795 AGCATCAAAGGGTACATGTAGAC 58.229 43.478 5.62 2.29 0.00 2.59
454 469 5.045942 TGAAGCATCAAAGGGTACATGTAGA 60.046 40.000 5.62 0.00 30.99 2.59
455 470 5.185454 TGAAGCATCAAAGGGTACATGTAG 58.815 41.667 5.62 0.00 30.99 2.74
456 471 5.172687 TGAAGCATCAAAGGGTACATGTA 57.827 39.130 0.08 0.08 30.99 2.29
457 472 4.032960 TGAAGCATCAAAGGGTACATGT 57.967 40.909 2.69 2.69 30.99 3.21
458 473 5.359009 AGAATGAAGCATCAAAGGGTACATG 59.641 40.000 0.00 0.00 39.49 3.21
459 474 5.359009 CAGAATGAAGCATCAAAGGGTACAT 59.641 40.000 0.00 0.00 39.69 2.29
460 475 4.701651 CAGAATGAAGCATCAAAGGGTACA 59.298 41.667 0.00 0.00 39.69 2.90
461 476 4.439289 GCAGAATGAAGCATCAAAGGGTAC 60.439 45.833 0.00 0.00 39.69 3.34
462 477 3.696051 GCAGAATGAAGCATCAAAGGGTA 59.304 43.478 0.00 0.00 39.69 3.69
463 478 2.494870 GCAGAATGAAGCATCAAAGGGT 59.505 45.455 0.00 0.00 39.69 4.34
464 479 2.494471 TGCAGAATGAAGCATCAAAGGG 59.506 45.455 0.00 0.00 39.69 3.95
465 480 3.861276 TGCAGAATGAAGCATCAAAGG 57.139 42.857 0.00 0.00 39.69 3.11
472 487 5.918426 TTTTATGGATGCAGAATGAAGCA 57.082 34.783 0.00 0.00 45.92 3.91
473 488 6.746120 AGATTTTATGGATGCAGAATGAAGC 58.254 36.000 0.00 0.00 39.69 3.86
484 499 6.525629 ACGGAGGAAGTAGATTTTATGGATG 58.474 40.000 0.00 0.00 0.00 3.51
514 529 6.363626 CGCAAGTGATCTAAACGCTCTTATAT 59.636 38.462 0.00 0.00 0.00 0.86
536 551 8.410912 ACATTGTACTGATATAAAGAGTACGCA 58.589 33.333 0.00 0.00 43.33 5.24
537 552 8.798748 ACATTGTACTGATATAAAGAGTACGC 57.201 34.615 0.00 0.00 43.33 4.42
569 584 7.931948 CCCCTCTACACCAATTTAGTATTAGTG 59.068 40.741 0.00 0.00 0.00 2.74
578 593 4.224370 GTCTCACCCCTCTACACCAATTTA 59.776 45.833 0.00 0.00 0.00 1.40
592 607 4.459089 GCCTCGCTGTCTCACCCC 62.459 72.222 0.00 0.00 0.00 4.95
617 632 2.186532 AGCCCTCTTCGTTCCTTTTC 57.813 50.000 0.00 0.00 0.00 2.29
675 705 1.153745 CTGACACGCTAGGACTGGC 60.154 63.158 0.00 0.00 0.00 4.85
720 770 2.292794 CTTTTCCGGGCCGATCGAGA 62.293 60.000 30.79 13.21 0.00 4.04
752 802 2.737376 GGTCGTGTCAAGGCGTCC 60.737 66.667 0.00 0.00 0.00 4.79
804 854 3.752339 CTTTTCGCTGGGCCTGGC 61.752 66.667 11.05 11.05 0.00 4.85
1110 1199 1.852351 CGAAGACGACGACGACGAC 60.852 63.158 25.15 18.88 41.06 4.34
1233 1322 2.143419 GCCCTCGATGATCCCCAGT 61.143 63.158 0.00 0.00 0.00 4.00
1489 1581 0.383949 CTTACCTCGCTGAGCTCCTC 59.616 60.000 12.15 1.47 0.00 3.71
1491 1583 0.179124 CACTTACCTCGCTGAGCTCC 60.179 60.000 12.15 0.00 0.00 4.70
1499 1591 2.873133 ATGCTAGTCACTTACCTCGC 57.127 50.000 0.00 0.00 0.00 5.03
1513 1605 1.746787 TCGAAGGCGAGTGTTATGCTA 59.253 47.619 0.00 0.00 42.51 3.49
1547 1644 1.838112 ATCAATCACGGTGCCATTGT 58.162 45.000 17.14 6.95 0.00 2.71
1555 1661 2.479566 ACAGAGCAATCAATCACGGT 57.520 45.000 0.00 0.00 0.00 4.83
1582 1700 3.190849 CTCCTGCGTCGCACATGG 61.191 66.667 17.58 16.56 33.79 3.66
1583 1701 2.125952 TCTCCTGCGTCGCACATG 60.126 61.111 17.58 6.91 33.79 3.21
1584 1702 2.182791 CTCTCCTGCGTCGCACAT 59.817 61.111 17.58 0.00 33.79 3.21
1586 1704 3.282745 TTCCTCTCCTGCGTCGCAC 62.283 63.158 17.58 0.00 33.79 5.34
1587 1705 2.989253 TTCCTCTCCTGCGTCGCA 60.989 61.111 20.44 20.44 36.92 5.10
1589 1707 0.179150 CTTCTTCCTCTCCTGCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
1590 1708 0.459411 GCTTCTTCCTCTCCTGCGTC 60.459 60.000 0.00 0.00 0.00 5.19
1857 1977 0.675837 GCCAGATGAAGAGCAGCACA 60.676 55.000 0.00 0.00 34.69 4.57
1860 1980 2.395651 CTGCCAGATGAAGAGCAGC 58.604 57.895 0.00 0.00 45.44 5.25
1961 2081 0.456995 GAGCTCGAAGACCTTGACGG 60.457 60.000 0.00 0.00 39.35 4.79
2029 2149 2.097466 AGCAACAAAACTTCACACTCCG 59.903 45.455 0.00 0.00 0.00 4.63
2043 2163 6.606234 TTTATTTACTCGTGACAGCAACAA 57.394 33.333 0.00 0.00 0.00 2.83
2044 2164 6.606234 TTTTATTTACTCGTGACAGCAACA 57.394 33.333 0.00 0.00 0.00 3.33
2083 2203 3.157932 TCGGCAAAGGAACACAAAAAG 57.842 42.857 0.00 0.00 0.00 2.27
2103 2224 5.048153 GCGAGAAGCCTTTTTCAGTTATT 57.952 39.130 0.00 0.00 40.81 1.40
2104 2225 4.686839 GCGAGAAGCCTTTTTCAGTTAT 57.313 40.909 0.00 0.00 40.81 1.89
2137 2258 9.549078 TGATGTTTGGTCGTTGCTTTATATATA 57.451 29.630 0.00 0.00 0.00 0.86
2138 2259 8.342634 GTGATGTTTGGTCGTTGCTTTATATAT 58.657 33.333 0.00 0.00 0.00 0.86
2139 2260 7.334671 TGTGATGTTTGGTCGTTGCTTTATATA 59.665 33.333 0.00 0.00 0.00 0.86
2152 2273 2.742774 GTTGGCTTGTGATGTTTGGTC 58.257 47.619 0.00 0.00 0.00 4.02
2167 2288 2.658268 GTGCTGGTTTGCGTTGGC 60.658 61.111 0.00 0.00 40.52 4.52
2174 2295 0.453793 TCGTGTTTGGTGCTGGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
2197 2318 3.247563 ACTTGCATCGTGTTTGTTACG 57.752 42.857 0.00 0.00 42.56 3.18
2198 2319 5.503498 TGTAACTTGCATCGTGTTTGTTAC 58.497 37.500 0.00 0.00 38.86 2.50
2199 2320 5.736486 TGTAACTTGCATCGTGTTTGTTA 57.264 34.783 0.00 0.00 0.00 2.41
2200 2321 4.624336 TGTAACTTGCATCGTGTTTGTT 57.376 36.364 0.00 0.00 0.00 2.83
2204 2325 3.472652 TCCTTGTAACTTGCATCGTGTT 58.527 40.909 0.00 0.00 0.00 3.32
2209 2330 2.754552 TGGCATCCTTGTAACTTGCATC 59.245 45.455 0.00 0.00 35.04 3.91
2217 2338 4.462483 GGTTGATCTTTGGCATCCTTGTAA 59.538 41.667 0.00 0.00 0.00 2.41
2220 2341 2.827322 TGGTTGATCTTTGGCATCCTTG 59.173 45.455 0.00 0.00 0.00 3.61
2225 2346 2.964464 TGTTGTGGTTGATCTTTGGCAT 59.036 40.909 0.00 0.00 0.00 4.40
2247 2368 0.824109 CTACTCGGAGTTGCATGGGA 59.176 55.000 16.95 0.00 0.00 4.37
2250 2371 1.204704 TGGTCTACTCGGAGTTGCATG 59.795 52.381 16.95 2.71 0.00 4.06
2253 2374 0.601558 TGTGGTCTACTCGGAGTTGC 59.398 55.000 16.95 10.10 0.00 4.17
2266 2387 3.259064 TGCTTAGCGTCTATTTGTGGTC 58.741 45.455 0.00 0.00 0.00 4.02
2276 2397 0.242825 TGTAGCGTTGCTTAGCGTCT 59.757 50.000 0.00 0.00 40.44 4.18
2279 2400 0.917259 CTCTGTAGCGTTGCTTAGCG 59.083 55.000 0.00 0.00 40.44 4.26
2280 2401 1.921230 GACTCTGTAGCGTTGCTTAGC 59.079 52.381 0.00 0.00 40.44 3.09
2290 2411 0.031449 GGCTCCATCGACTCTGTAGC 59.969 60.000 0.00 0.00 0.00 3.58
2336 2457 0.596600 TGTCGACGTTCAGCTTCACC 60.597 55.000 11.62 0.00 0.00 4.02
2343 2464 3.147294 CGGCTTGTCGACGTTCAG 58.853 61.111 11.62 5.35 40.01 3.02
2372 2493 0.391661 TGATCTCTTGAAGGCACCGC 60.392 55.000 0.00 0.00 0.00 5.68
2373 2494 1.363744 GTGATCTCTTGAAGGCACCG 58.636 55.000 0.00 0.00 0.00 4.94
2375 2496 1.996191 GTCGTGATCTCTTGAAGGCAC 59.004 52.381 0.00 0.00 0.00 5.01
2400 2522 4.625781 CGGGTAGTAGCGGCGCTC 62.626 72.222 39.97 27.66 40.44 5.03
2402 2524 3.893343 GATCGGGTAGTAGCGGCGC 62.893 68.421 26.86 26.86 0.00 6.53
2406 2528 0.748450 TTTGGGATCGGGTAGTAGCG 59.252 55.000 0.00 0.00 0.00 4.26
2407 2529 1.070289 CCTTTGGGATCGGGTAGTAGC 59.930 57.143 0.00 0.00 33.58 3.58
2409 2531 2.852714 TCCTTTGGGATCGGGTAGTA 57.147 50.000 0.00 0.00 36.57 1.82
2422 2544 8.344098 GCTCTAGATGAAAATCTTGATCCTTTG 58.656 37.037 0.00 0.00 33.36 2.77
2439 2561 1.126890 CATGCGTCGTGCTCTAGATG 58.873 55.000 0.00 0.00 46.63 2.90
2444 2566 1.227089 GGATCATGCGTCGTGCTCT 60.227 57.895 0.00 0.00 46.63 4.09
2445 2567 1.083806 TTGGATCATGCGTCGTGCTC 61.084 55.000 0.00 0.00 46.63 4.26
2447 2569 0.521242 GTTTGGATCATGCGTCGTGC 60.521 55.000 0.00 0.00 46.70 5.34
2454 2576 1.617850 TGTGGTTGGTTTGGATCATGC 59.382 47.619 0.00 0.00 0.00 4.06
2463 2585 3.366052 AGTCTCTGTTGTGGTTGGTTT 57.634 42.857 0.00 0.00 0.00 3.27
2464 2586 3.279434 GAAGTCTCTGTTGTGGTTGGTT 58.721 45.455 0.00 0.00 0.00 3.67
2466 2588 2.917933 TGAAGTCTCTGTTGTGGTTGG 58.082 47.619 0.00 0.00 0.00 3.77
2467 2589 4.191544 TCTTGAAGTCTCTGTTGTGGTTG 58.808 43.478 0.00 0.00 0.00 3.77
2473 2595 7.328249 GTCATCTACTTCTTGAAGTCTCTGTTG 59.672 40.741 17.89 12.02 34.37 3.33
2474 2596 7.375053 GTCATCTACTTCTTGAAGTCTCTGTT 58.625 38.462 17.89 0.00 34.37 3.16
2476 2598 6.027131 CGTCATCTACTTCTTGAAGTCTCTG 58.973 44.000 17.89 13.38 34.37 3.35
2477 2599 5.708230 ACGTCATCTACTTCTTGAAGTCTCT 59.292 40.000 17.89 3.28 34.37 3.10
2525 2647 1.153289 CTTGTCTGGCGCTGGCTAT 60.153 57.895 7.64 0.00 39.81 2.97
2532 2654 0.317854 GTGAAAACCTTGTCTGGCGC 60.318 55.000 0.00 0.00 0.00 6.53
2533 2655 0.310854 GGTGAAAACCTTGTCTGGCG 59.689 55.000 0.00 0.00 0.00 5.69
2534 2656 0.673985 GGGTGAAAACCTTGTCTGGC 59.326 55.000 0.00 0.00 0.00 4.85
2535 2657 1.956477 CAGGGTGAAAACCTTGTCTGG 59.044 52.381 0.00 0.00 35.78 3.86
2560 2683 0.037326 TCACTGACCGAATGTGGAGC 60.037 55.000 0.00 0.00 33.04 4.70
2567 2690 2.125512 GCCGCTCACTGACCGAAT 60.126 61.111 0.00 0.00 0.00 3.34
2581 2704 3.300009 GCGGAGATTTCATTATTTGCCG 58.700 45.455 0.00 0.00 39.23 5.69
2587 2710 5.003804 GTGGTATGGCGGAGATTTCATTAT 58.996 41.667 0.00 0.00 0.00 1.28
2588 2711 4.385825 GTGGTATGGCGGAGATTTCATTA 58.614 43.478 0.00 0.00 0.00 1.90
2589 2712 3.214328 GTGGTATGGCGGAGATTTCATT 58.786 45.455 0.00 0.00 0.00 2.57
2591 2714 1.134220 GGTGGTATGGCGGAGATTTCA 60.134 52.381 0.00 0.00 0.00 2.69
2600 2723 1.887242 CCGTGATGGTGGTATGGCG 60.887 63.158 0.00 0.00 0.00 5.69
2602 2725 0.532862 GCTCCGTGATGGTGGTATGG 60.533 60.000 0.00 0.00 39.52 2.74
2621 2744 1.327460 CATGATGGTTCGTAGTTGGCG 59.673 52.381 0.00 0.00 0.00 5.69
2622 2745 1.064060 GCATGATGGTTCGTAGTTGGC 59.936 52.381 0.00 0.00 0.00 4.52
2624 2747 2.095853 GTGGCATGATGGTTCGTAGTTG 59.904 50.000 0.00 0.00 0.00 3.16
2626 2749 1.406887 GGTGGCATGATGGTTCGTAGT 60.407 52.381 0.00 0.00 0.00 2.73
2628 2751 0.107410 GGGTGGCATGATGGTTCGTA 60.107 55.000 0.00 0.00 0.00 3.43
2631 2754 1.758122 GGGGGTGGCATGATGGTTC 60.758 63.158 0.00 0.00 0.00 3.62
2651 2774 1.750332 GCATGCTAGTTACCATGGCCA 60.750 52.381 13.04 8.56 39.30 5.36
2653 2776 1.334869 GTGCATGCTAGTTACCATGGC 59.665 52.381 20.33 0.00 39.30 4.40
2709 2832 0.398522 ATGACGGCCCTGGTGATAGA 60.399 55.000 0.00 0.00 0.00 1.98
2711 2834 1.407656 GGATGACGGCCCTGGTGATA 61.408 60.000 0.00 0.00 0.00 2.15
2713 2836 3.399181 GGATGACGGCCCTGGTGA 61.399 66.667 0.00 0.00 0.00 4.02
2725 2848 0.982852 ATGCCCGGTCTTCTGGATGA 60.983 55.000 0.00 0.00 42.46 2.92
2733 2856 2.017559 GCTCGAGTATGCCCGGTCTT 62.018 60.000 15.13 0.00 0.00 3.01
2743 2866 1.051812 CCTTGGATGGGCTCGAGTAT 58.948 55.000 15.13 6.49 0.00 2.12
2744 2867 1.686325 GCCTTGGATGGGCTCGAGTA 61.686 60.000 15.13 1.27 45.57 2.59
2745 2868 3.036429 GCCTTGGATGGGCTCGAGT 62.036 63.158 15.13 0.00 45.57 4.18
2746 2869 2.203126 GCCTTGGATGGGCTCGAG 60.203 66.667 8.45 8.45 45.57 4.04
2752 2875 4.820744 CCCGTGGCCTTGGATGGG 62.821 72.222 14.64 9.40 31.90 4.00
2766 2889 1.067706 TGTTGATCAATGCTTTGCCCG 60.068 47.619 12.12 0.00 32.61 6.13
2770 2893 4.685924 GGGGTATGTTGATCAATGCTTTG 58.314 43.478 12.12 5.99 0.00 2.77
2771 2894 3.381272 CGGGGTATGTTGATCAATGCTTT 59.619 43.478 12.12 0.00 0.00 3.51
2780 2903 1.420430 ATCGGTCGGGGTATGTTGAT 58.580 50.000 0.00 0.00 0.00 2.57
2793 2916 2.034879 CGCCATGGCCATATCGGTC 61.035 63.158 30.79 10.82 41.21 4.79
2797 2920 1.376543 CTGATCGCCATGGCCATATC 58.623 55.000 30.79 26.96 37.98 1.63
2798 2921 0.034767 CCTGATCGCCATGGCCATAT 60.035 55.000 30.79 20.82 37.98 1.78
2799 2922 1.126948 TCCTGATCGCCATGGCCATA 61.127 55.000 30.79 16.89 37.98 2.74
2800 2923 2.114625 CCTGATCGCCATGGCCAT 59.885 61.111 30.79 24.49 37.98 4.40
2801 2924 3.089217 TCCTGATCGCCATGGCCA 61.089 61.111 30.79 20.18 37.98 5.36
2802 2925 2.592861 GTCCTGATCGCCATGGCC 60.593 66.667 30.79 17.44 37.98 5.36
2803 2926 2.592861 GGTCCTGATCGCCATGGC 60.593 66.667 27.67 27.67 37.85 4.40
2804 2927 1.227764 CTGGTCCTGATCGCCATGG 60.228 63.158 7.63 7.63 0.00 3.66
2805 2928 1.227764 CCTGGTCCTGATCGCCATG 60.228 63.158 0.00 0.00 0.00 3.66
2806 2929 1.383109 TCCTGGTCCTGATCGCCAT 60.383 57.895 0.00 0.00 0.00 4.40
2807 2930 2.038813 TCCTGGTCCTGATCGCCA 59.961 61.111 0.00 0.00 0.00 5.69
2808 2931 2.818132 CTCCTGGTCCTGATCGCC 59.182 66.667 0.00 0.00 0.00 5.54
2809 2932 2.107953 GCTCCTGGTCCTGATCGC 59.892 66.667 0.00 0.00 0.00 4.58
2810 2933 0.460987 GTTGCTCCTGGTCCTGATCG 60.461 60.000 0.00 0.00 0.00 3.69
2811 2934 0.908198 AGTTGCTCCTGGTCCTGATC 59.092 55.000 0.00 0.00 0.00 2.92
2812 2935 2.114616 CTAGTTGCTCCTGGTCCTGAT 58.885 52.381 0.00 0.00 0.00 2.90
2813 2936 1.561643 CTAGTTGCTCCTGGTCCTGA 58.438 55.000 0.00 0.00 0.00 3.86
2814 2937 0.539051 CCTAGTTGCTCCTGGTCCTG 59.461 60.000 0.00 0.00 0.00 3.86
2815 2938 1.268283 GCCTAGTTGCTCCTGGTCCT 61.268 60.000 0.00 0.00 0.00 3.85
2816 2939 1.222113 GCCTAGTTGCTCCTGGTCC 59.778 63.158 0.00 0.00 0.00 4.46
2817 2940 1.222113 GGCCTAGTTGCTCCTGGTC 59.778 63.158 0.00 0.00 0.00 4.02
2818 2941 2.660064 CGGCCTAGTTGCTCCTGGT 61.660 63.158 0.00 0.00 0.00 4.00
2819 2942 2.187946 CGGCCTAGTTGCTCCTGG 59.812 66.667 0.00 0.00 0.00 4.45
2820 2943 1.142748 CTCGGCCTAGTTGCTCCTG 59.857 63.158 0.00 0.00 0.00 3.86
2821 2944 2.060980 CCTCGGCCTAGTTGCTCCT 61.061 63.158 0.00 0.00 0.00 3.69
2822 2945 2.501610 CCTCGGCCTAGTTGCTCC 59.498 66.667 0.00 0.00 0.00 4.70
2823 2946 1.614241 TTCCCTCGGCCTAGTTGCTC 61.614 60.000 0.00 0.00 0.00 4.26
2824 2947 1.198759 TTTCCCTCGGCCTAGTTGCT 61.199 55.000 0.00 0.00 0.00 3.91
2825 2948 0.744771 CTTTCCCTCGGCCTAGTTGC 60.745 60.000 0.00 0.00 0.00 4.17
2826 2949 0.107654 CCTTTCCCTCGGCCTAGTTG 60.108 60.000 0.00 0.00 0.00 3.16
2827 2950 0.546988 ACCTTTCCCTCGGCCTAGTT 60.547 55.000 0.00 0.00 0.00 2.24
2828 2951 1.080538 ACCTTTCCCTCGGCCTAGT 59.919 57.895 0.00 0.00 0.00 2.57
2829 2952 0.976073 TCACCTTTCCCTCGGCCTAG 60.976 60.000 0.00 0.00 0.00 3.02
2830 2953 0.545787 TTCACCTTTCCCTCGGCCTA 60.546 55.000 0.00 0.00 0.00 3.93
2831 2954 1.423794 TTTCACCTTTCCCTCGGCCT 61.424 55.000 0.00 0.00 0.00 5.19
2832 2955 0.960861 CTTTCACCTTTCCCTCGGCC 60.961 60.000 0.00 0.00 0.00 6.13
2833 2956 0.250770 ACTTTCACCTTTCCCTCGGC 60.251 55.000 0.00 0.00 0.00 5.54
2834 2957 1.523758 CACTTTCACCTTTCCCTCGG 58.476 55.000 0.00 0.00 0.00 4.63
2835 2958 0.875059 GCACTTTCACCTTTCCCTCG 59.125 55.000 0.00 0.00 0.00 4.63
2836 2959 1.609072 GTGCACTTTCACCTTTCCCTC 59.391 52.381 10.32 0.00 0.00 4.30
2837 2960 1.692411 GTGCACTTTCACCTTTCCCT 58.308 50.000 10.32 0.00 0.00 4.20
2838 2961 0.310854 CGTGCACTTTCACCTTTCCC 59.689 55.000 16.19 0.00 33.57 3.97
2839 2962 1.264288 CTCGTGCACTTTCACCTTTCC 59.736 52.381 16.19 0.00 33.57 3.13
2840 2963 1.940613 ACTCGTGCACTTTCACCTTTC 59.059 47.619 16.19 0.00 33.57 2.62
2841 2964 2.038387 ACTCGTGCACTTTCACCTTT 57.962 45.000 16.19 0.00 33.57 3.11
2842 2965 2.364324 TCTACTCGTGCACTTTCACCTT 59.636 45.455 16.19 0.00 33.57 3.50
2843 2966 1.961394 TCTACTCGTGCACTTTCACCT 59.039 47.619 16.19 0.00 33.57 4.00
2844 2967 2.433868 TCTACTCGTGCACTTTCACC 57.566 50.000 16.19 0.00 33.57 4.02
2845 2968 3.381949 AGTTCTACTCGTGCACTTTCAC 58.618 45.455 16.19 2.52 0.00 3.18
2846 2969 3.639538 GAGTTCTACTCGTGCACTTTCA 58.360 45.455 16.19 0.00 35.28 2.69
2857 2980 3.637998 TGTTGTGGACGAGTTCTACTC 57.362 47.619 0.00 0.00 41.71 2.59
2858 2981 3.861131 GCATGTTGTGGACGAGTTCTACT 60.861 47.826 0.00 0.00 36.66 2.57
2859 2982 2.412089 GCATGTTGTGGACGAGTTCTAC 59.588 50.000 0.00 0.00 36.25 2.59
2860 2983 2.036604 TGCATGTTGTGGACGAGTTCTA 59.963 45.455 0.00 0.00 0.00 2.10
2861 2984 1.202639 TGCATGTTGTGGACGAGTTCT 60.203 47.619 0.00 0.00 0.00 3.01
2862 2985 1.069906 GTGCATGTTGTGGACGAGTTC 60.070 52.381 0.00 0.00 39.44 3.01
2863 2986 0.944386 GTGCATGTTGTGGACGAGTT 59.056 50.000 0.00 0.00 39.44 3.01
2864 2987 2.616969 GTGCATGTTGTGGACGAGT 58.383 52.632 0.00 0.00 39.44 4.18
2869 2992 0.998928 ATAGGGGTGCATGTTGTGGA 59.001 50.000 0.00 0.00 0.00 4.02
2870 2993 1.105457 CATAGGGGTGCATGTTGTGG 58.895 55.000 0.00 0.00 0.00 4.17
2871 2994 0.457035 GCATAGGGGTGCATGTTGTG 59.543 55.000 0.00 0.00 44.43 3.33
2872 2995 0.684153 GGCATAGGGGTGCATGTTGT 60.684 55.000 0.00 0.00 46.81 3.32
2873 2996 1.727511 CGGCATAGGGGTGCATGTTG 61.728 60.000 0.00 0.00 46.81 3.33
2874 2997 1.453745 CGGCATAGGGGTGCATGTT 60.454 57.895 0.00 0.00 46.81 2.71
2875 2998 2.192979 CGGCATAGGGGTGCATGT 59.807 61.111 0.00 0.00 46.81 3.21
2876 2999 2.595463 CCGGCATAGGGGTGCATG 60.595 66.667 0.00 0.00 46.81 4.06
2877 3000 3.096495 ACCGGCATAGGGGTGCAT 61.096 61.111 0.00 0.00 46.81 3.96
2878 3001 4.108299 CACCGGCATAGGGGTGCA 62.108 66.667 0.00 0.00 46.34 4.57
2881 3004 3.467226 CGTCACCGGCATAGGGGT 61.467 66.667 0.00 0.00 35.77 4.95
2882 3005 3.151710 TCGTCACCGGCATAGGGG 61.152 66.667 0.00 0.00 35.56 4.79
2883 3006 2.417516 CTCGTCACCGGCATAGGG 59.582 66.667 0.00 0.00 35.02 3.53
2884 3007 2.279517 GCTCGTCACCGGCATAGG 60.280 66.667 0.00 0.00 32.67 2.57
2885 3008 2.655364 CGCTCGTCACCGGCATAG 60.655 66.667 0.00 0.00 32.67 2.23
2886 3009 4.201679 CCGCTCGTCACCGGCATA 62.202 66.667 0.00 0.00 37.85 3.14
2897 3020 4.473520 ATGAGGTTGGGCCGCTCG 62.474 66.667 0.00 0.00 43.70 5.03
2898 3021 2.514824 GATGAGGTTGGGCCGCTC 60.515 66.667 0.00 0.00 43.70 5.03
2899 3022 3.329889 TGATGAGGTTGGGCCGCT 61.330 61.111 0.00 0.00 43.70 5.52
2900 3023 2.825836 CTGATGAGGTTGGGCCGC 60.826 66.667 0.00 0.00 43.70 6.53
2901 3024 1.153289 CTCTGATGAGGTTGGGCCG 60.153 63.158 0.00 0.00 43.70 6.13
2902 3025 1.452833 GCTCTGATGAGGTTGGGCC 60.453 63.158 0.00 0.00 40.53 5.80
2903 3026 1.452833 GGCTCTGATGAGGTTGGGC 60.453 63.158 0.00 0.00 40.53 5.36
2904 3027 0.549950 ATGGCTCTGATGAGGTTGGG 59.450 55.000 0.00 0.00 40.53 4.12
2905 3028 1.476471 GGATGGCTCTGATGAGGTTGG 60.476 57.143 0.00 0.00 40.53 3.77
2906 3029 1.211212 TGGATGGCTCTGATGAGGTTG 59.789 52.381 0.00 0.00 40.53 3.77
2907 3030 1.588239 TGGATGGCTCTGATGAGGTT 58.412 50.000 0.00 0.00 40.53 3.50
2908 3031 1.698532 GATGGATGGCTCTGATGAGGT 59.301 52.381 0.00 0.00 40.53 3.85
2909 3032 1.003349 GGATGGATGGCTCTGATGAGG 59.997 57.143 0.00 0.00 40.53 3.86
2910 3033 1.003349 GGGATGGATGGCTCTGATGAG 59.997 57.143 0.00 0.00 42.96 2.90
2911 3034 1.062364 GGGATGGATGGCTCTGATGA 58.938 55.000 0.00 0.00 0.00 2.92
2912 3035 0.037877 GGGGATGGATGGCTCTGATG 59.962 60.000 0.00 0.00 0.00 3.07
2913 3036 1.138863 GGGGGATGGATGGCTCTGAT 61.139 60.000 0.00 0.00 0.00 2.90
2914 3037 1.771746 GGGGGATGGATGGCTCTGA 60.772 63.158 0.00 0.00 0.00 3.27
2915 3038 2.842058 GGGGGATGGATGGCTCTG 59.158 66.667 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.