>input_sequence_65033
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------------------------------------------------ATGGCCGCGCCCATGGCCTCGCCGCTCACGGC
CGTCGCCCGCGCCGCCCGCCTCCACCCCGTCTCCTGCTCCGCCTCCTCCTCCTCTCCCAAGAACCCCAAACAGTCGTCGT
CGTCGTCGTCGTCTTCGCCGCCTGCTGTGCCGTCGCTGAGGTCCGCGGCGGTGGCGTTGGCGGGGGCGGTGCCGCTGCTG
GCGGCGCTGCCGCCGCCGGACGCGCTGGCCGTGGGCGGCGAACTGGGGATCATCGAGGGCCGGACCGTCGCGCTGCTGCA
CCCGGCCATCATGGGCGGCCTCTTCGCCTACACGCTCTGGGCGGGCTACCTCGGCTGGCAGTGGCGCCGCGTCCGCACCG
TCCAGGACGAGATCACCGAGCTCAAGAAGCAGGTCCGCCCCGCCGCCGCCGCCGCCACCCCCGCCGCGGTCGGCGCCGGG
GACTCCGCCTCC---CCGCCCCCGCCCCCCGCTGCCAAGTCCCCCACCGAGATCAAGATCGAGGAGCTCAGCGAGGTAAG
TGACTAGCATAACACTCGCCTTCGAGCTC-----GTTCGACTTA---------CAATGGCACCGTGA------------T
TGATTGCTCTGTTCCATCGCCATGTGCG--ACGCAGGAGAGGAAGAAGCTGGTGAAGGGAGGCTTCCGGGACCGGCACTT
CAACGCGGGGTCGATCCTGCTGGGCCTGGGCGTGACGGAGTCCGTCGGCGGCGCGCTCAACACCTGGCTCCGCACCGGCA
AGCTCTTCCCGGGCCCGCACCTGTTCGCGGGGGCGGCCATCACCGTGCTCTGGGCGGCGGCCGCGGCGCTGGTGCCGGCG
ATGCAGAAGGGGAACGAGACGGCCAGGAGCCTGCACATCGCGCTCAACACCATCAATGTGCTGCTCTTCATCTGGCAGAT
CCCCACGGGGCTCGAGATCGTCGGCAAGGTCTTCGAGTTCACCAACTGGCCATGA-------------------------
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>chr6B_1_TraesCS6B01G089400
TAGATATGCTCGTGTCTAGCTATGGATTT-CACTACAAAACCCTAGTGGACAAGATTTCCCTATTGTATACTCTAGGGGA
AATGCCCTAGGGTGATGGGAATATCTTTGTTTCCCTTGGATTTCAGGAGAATACCCTTAAGC-AACGAACAATTCCCCAT
GGGTTTGGAGATTCTAGAAGTCATGGTATGGTCCTCAACGTGCATCCGATGGTTTCTCCAGTAGTGTGGAAGAGCCCTCG
ACTCTCTCA-------TCGCTAGAAC-----TAGCGTTACGTCGTCAGCCGATAGAGAGGTTGATTACAGTGATGGATCC
GGGTGAATCGAACAGTTTGCGTGCAAGGCAATTAGATGGCTCTTGAGCCCGCTTGCACCGGTCGACTGGCGCCTAGTGTC
GGCCTATTGTGTCTGCATGTACCCTTTGATGCTTCATTATGTATCCATAAAATCTACGGCTTATTGTGTCTACATGTACC
CTTTGATGCTTCATTCTGCATCCATAAAATCTACTTCCTCCGTAAAAAATATAAGAGCGTTTAGATCACTTGCGTACTCT
TTATATCAGTACAATGTTCATACCACTAATACTAAATTGGTGTAGAGGGGTGAGACAGCGAGGCGAAACTCGAAAAGGAA
CGAAGAGGGC---------------TTGGCGCGACTGAGCTGGGCGAGCACAACGGCGCCGTAGG---------------
--CCAGTCCT--AGCGTGTCAGT-CCACGCACCACTCGCTTACCCATCGTCTCGATCGGCCCGGAAAAGCCCAACGGACA
GGGACGCCTTGACACGACCATACCCGTCGCCGTCGGCCCGGAAGACGCCGGAAGCCAGGCCCAGCGAAAAGCGCTGGCCG
CGCGCGTGGACGCCACGCCGCCTGTCGTCTC-TCTCCCCCAACCAACACCGAGCTCACACTCGCTCAGCCCTC-------
--------------------GCCAGCTCGTCCGTCCGTTCGTTTCCTTATCTCCTCTCCTGCTCCT---CCCTCCACCCC
CACCACCAGTCCAGGACGCACGCA----CGCA----GCTCGAACGCCCATGGCCGCGCCCATGGCCTCGCCGCTCACGGC
CGTCGCCCGCGCCGCCCGCCTCCACCCCGTCTCCTGCTCCGCCTCCTCCTCCTCTCCCAAGAACCCCAAACAGTCGTCGT
CGTCGTCGTCGTCTTCGCCGCCTGCTGTGCCGTCGCTGAGGTCCGCGGCGGTGGCGTTGGCGGGGGCGGTGCCGCTGCTG
GCGGCGCTGCCGCCGCCGGACGCGCTGGCCGTGGGCGGCGAACTGGGGATCATCGAGGGCCGGACCGTCGCGCTGCTGCA
CCCGGCCATCATGGGCGGCCTCTTCGCCTACACGCTCTGGGCGGGCTACCTCGGCTGGCAGTGGCGCCGCGTCCGCACCG
TCCAGGACGAGATCACCGAGCTCAAGAAGCAGGTCCGCCCCGCCGCCGCCGCCGCCACCCCCGCCGCGGTCGGCGCCGGG
GACTCCGCCTCC---CCGCCCCCGCCCCCCGCTGCCAAGTCCCCCACCGAGATCAAGATCGAGGAGCTCAGCGAGGTAAG
TGACTAGCATAACACTCGCCTTCGAGCTC-----GTTCGACTTA---------CAATGGCACCGTGA------------T
TGATTGCTCTGTTCCATCGCCATGTGCG--ACGCAGGAGAGGAAGAAGCTGGTGAAGGGAGGCTTCCGGGACCGGCACTT
CAACGCGGGGTCGATCCTGCTGGGCCTGGGCGTGACGGAGTCCGTCGGCGGCGCGCTCAACACCTGGCTCCGCACCGGCA
AGCTCTTCCCGGGCCCGCACCTGTTCGCGGGGGCGGCCATCACCGTGCTCTGGGCGGCGGCCGCGGCGCTGGTGCCGGCG
ATGCAGAAGGGGAACGAGACGGCCAGGAGCCTGCACATCGCGCTCAACACCATCAATGTGCTGCTCTTCATCTGGCAGAT
CCCCACGGGGCTCGAGATCGTCGGCAAGGTCTTCGAGTTCACCAACTGGCCATGAGCTCCACCTAAGCAGGCCATGATCG
CCGTCAAGGTCTTCGAGCTCGGGGTTGTTTGATTCGTCTCTCTCTGTTCATAAGATCGTAGCTGACTTCGGAGTGTGAAG
TTTTGTTGCTGTCACGAGTAAATAAAAAACGAATTTGCAGTGC-TTTTTGTGTTCCTTTGCCGAATAACTGAAAAAGGCT
TCTCGCCCCGCTTTATATATATATAAAGCAACGACCAAACATCACAAGCCAACGCAAACCAGCACCAAACACGACGCCGT
AACAAACACGATGCAAGTTACAAGGATGCCAAAGATCAACCACAACATCCCATGCAACTCCGAGTAGACCACAAATAGAC
GCTAAGCAACGCTACAGAGTCGATGGAGCCCTCAACCGTGAAAGACACCGCGAAGAGGTGAAGCTGAACGTCGACAAGCC
GTGAGCTACAAGGCGGTGCCTTCAAGA-GATCACGACACCGGAGCGCCGCTACTACCCGATCCCAAAGGATCAAGATTTT
CATCTAGAGCACGACGCATGATCCAAACCAACCACAACAGAGACTTCAAGAAGTAGATGACGTCCATGGACGTCGCCTCC
ATCAGCATAGCCAGCGCC-AGACAAGGTTTTCACCCTGGCACGCTCCACATTCGGTCAGTGAGCGGCAAATAATGAAATC
TCCGCCATACCACCATCACGGAGCGCCAACTACGAACCATCATGCCACCCCCATGGCCATGGTAACTAGCATGCACCCGA
GCCCCGGTGTCAGCCCACGAGCACCGCGGCTTCTATCACCAGGGCCGTCATCCAGAAGACCGGGCATACTCGAGCCCATC
CAAGGCCACGGGCAAAGCATTGATCAACATACCCCGACCGATATGGCCATGGCGATCAGGACCAGGAGCAACTAGGCCGA
GGGAAAGGTGAAAGTGCACGAGTAGAACTCGTCCACAACATGCACCCCTATGCCGGTGACGAGCGGCCCAACCTCATCAG
AGCCATCCATCCCCCCCG
>chrUn_1
TAGATATTCTCGTGTCTAGCTATGGATTTTCACTACAAAACCCTAGTGGGCAAGATTTCCCTATTGTATACTCCAGGGGA
TTTGCCCTAGGATGATGGGGAAATCTTTGTTTCCCTTGGATTTCAGGAGAATACCCCCTAGCTAACGAATAATTTCACAT
GGGTTTGGAGATTCTAGAAGTCATGGTATGGTCCTCAACGTGCATCCGATGGTTTCTCCAGCGGTGTGGAAGAGCCCTCG
ACTCTCTCAAGTCTCATCGCTAGAATCCAGTTAGCGTTACGTCATCAGCCGGTAGAGAGGTTGATGACAATGATGGATCC
GGGTGAATCGAATGGTTTGCGTGCAAGGCAATCATACGGCTCTTGAGGCCGCTTGCATCGGTCGACTGGCGCCTAGTGTC
GGCCTATTATGACTGTCTGTATCCTTTGATG-------------------------------------------------
--------CTTCATTCTGTATCCATAAAATCTACTCCCTCCATAAAAATTATAAGAACGTTTAGATCACTGACGTACTCT
TTATATCA-TACAATGTTCATACTACTAATACCAAATTGGTGTAGAAGGGTGAGACAGCGAGGCGAAACTCAAAAAGGAA
CGAAGAGGAGCGTCTAAGGAAGGGATTCGCGCGACTGAGCTGGGCGAGCACCATGGCGCCGTAGACTGTAGAC------C
GACCAGTCCTAAAACGTGTCAGTCCCACGCACCACTCGCTTCCCCGTCGGCTCGATCGGCCCCGAAAAGCCCAACGGACA
GCGACGCCTTGATACGACGATACCCGTCGCCGTCGGCCCGGAAGACGCCGGAAACCAGGCCCAGCCAAAAGCGCTGGCCG
CGCGCGTGGACGCCACGCCGCCTGTCGTCTC-TCTCCCCCAACCAACACCGAGCTCACGCTCGCTCAGCTCTC-------
--------------------GCCAGCTCGTCCGTCCGTTCGTTTCCTTATCTCCTCTCCTGCTCCTCCACCCTCCACCCC
CACCACCAGTCCAGGACGCACGCA----CGCACGCAGCTCGAACGCCCATGGCCGCGCCCATGGCCTCGCCGCTCACGGC
CGTCGCCCGCGCCGCCCGCGTCCACCCCGTCTCCTGCTCCGCCTCCTCCTCCTCTGCCAAGAACCCCAAGCAGTCG---T
CGTCGTCGTCGTCTTCGCCGCCTGCTGTGCCGTCGCTGAGGTCCACGGCGGTGGCGTTGGCGGGGGCGGTGCCGCTGCTG
GCGGCGCTCCCGCCGCCGGACGCGATGGCGGTGGGCGGCGAGCTGGGGATCATCGAGGGCCGCACCGTCGCGCTGCTGCA
CCCGGCCATCATGGGCGGCCTCTTCGCCTACACGCTCTGGGCGGGCTACCTCGGCTGGCAGTGGCGCCGCGTCCGCACCG
TCCAGGACGAGATCACCGAGCTCAAGAAGCAGGTCCGCCCCGCCG---CCGCCGCCACCCCGGCCGCGGTCGGCGCCGGG
GACTCCGC---C---CCGCCCCCGCCCCCCGCCGCCAAGTCCCCCACCGAGATCAAGATCAACGAGCTCACCGAGGTAAG
TGACCAGCATAACAATCGCCTTCCAGCTCATCTCCTTCGACTTGTCATTCTCGCAATGGCGCCATGTGGGTTAGCTA-TT
TGATTGCTCTGATGTGCTCTGCTCCGGCGAACGCAGGAGAGGAAGAAGCTGGTGAAGGGCGGGTTCCGGGACCGGCACTT
CAACGCGGGGTCGATCCTGCTGGGCCTGGGCGTGACGGAGTCCGTCGGCGGCGCGCTCAACACCTGGCTCCGCACCGGCA
AGCTCTTCCCGGGCCCGCACCTGTTCGCGGGGGCGGCCATCACCGTGCTCTGGGCGGCGGCCGCGGCGCTGGTGCCGGCG
ATGCAGAAGGGGAACGAGACGGCCAGGAGCCTGCACATCGCGCTCAACACCATCAACGTCCTGCTCTTCATCTGGCAGAT
CCCCACGGGGCTCGAGATCGTCGGCAAGGTCTTCGAGTTCACCAACTGGCCATGAGCTCCACCTAAGCAGGCCATGATCG
TCGT-AAGGTCTTCGAGCTCTGGGTTGTCTGATTCGTCTCTCTCTGTCCATAAGATCGTAGCTGACTTTGGAGTGTGAAG
TT---TTGCTGTCACGAGTAAATAAAAAACGAATTTGCAGGG--TTTTTGTGTTCATTTGCCG-----------------
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>chr6A_632
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-----AGGGC---------------TTGGCGCGACTGAGCTGGGCGAGCACCACGGCGCCGTAGAGGCATAGACTGTGTC
GACCAGTCCT--AACGTGTCAGTCCCACGCACCACTCGCTTCCCCATCGAGGCGATCGGCCCGGAAAAGCCCAACGGACA
GCGACGCCTTGATACGACGATACCCGTCGCCGTCGGCCCGGAAGACGCCGGAAACGAGGCCCAGCCAAAAGCGCTGGCCG
CGCGCGTGGACGCCACGCCGCCTGTCGTCTCGTCTCCCCCAACCAACACCGAGCTCACCCTCGCTCAGGCTCAGCTCGCC
AAAAGCACACCAGCCAGCCAGCCAGCTCGTCCGTCCGTTCATTTCCTTATCTCCTCCCAG--------------------
--CCACCAGTCCAGGACGCACGCGCGCGCGCA----GCTCGAACGCCCATGGCCGCGCCGATGGCCTCGCCGCTCACGGC
CGTCGCCCGCGCCGCCCGCCTCCACCCCGTCTCCTGCTCCGCCTCCCCCTCCTCTCCCAAGAACCCCAAACAGTCG---T
CGC------CGTCTTCGTCGCCTGCTGTGCCGTCGCTGAGGTCCGCGGCGGTGGCGCTGGCGGGGGCGGTGCCGCTGCTG
GCGGCGCTCCCGCCGCCGGACGCGCTGGCGGTGGGCGGCGAGCTGGGGATCATCGAGGGCCGCACCGTCGCGCTGCTGCA
CCCGGCCATCATGGGCGGCCTCTTCGCCTACACGCTCTGGGCGGGCTACCTCGGCTGGCAGTGGCGCCGCGTCCGCACCG
TCCAGGACGAGATCACCGAGCTCAAGAAGCAGGTCCGCCCCGCCGCG---GCCGCTACCCCCGCCGCGGTCGGCGCCGGG
GACTCCGC---CGCCCCGCCCCCTCCCCCAGCCGCCAAGTCCCCGACCGAGATCAAGATCAACGAGCTCACCGAGGTAAG
TGACCAGCA-----ATCGCCTTCGAGCTCAGCTCGTTCGACTTGTTATTCTCGCAATGGCGCCATGTGGGTTTGCTAATT
TGATTGCTCTCATATGCTCTGCTCCGGCGAACGCAGGAGAGGAAGAAGCTGGTGAAGGGCGGGTTCCGGGACCGGCACTT
CAACGCGGGGTCGATCCTGCTGGGCCTGGGCGTCACCGAGTCCGTCGGCGGCGCGCTCAATACCTGGCTCCGCACCGGCA
AGCTCTTCCCGGGCCCGCACCTGTTCGCGGGGGCGGCCATCACCGTGCTCTGGGCGGCGGCCGCGGCGCTGGTGCCGGCG
ATGCAGAAGGGGAACGAGACGGCCAGGAGCCTGCACATCGCGCTCAACACCATCAACGTCCTGCTCTTCATCTGGCAGAT
CCCCACGGGGCTCGAGATCGTCGGCAAGGTCTTCGAGTTCACCAACTGGCCATGAGCTCCACCTAAGCAGGCCATGATCG
TCGGCAAGGTCTTCGAGCTCGGGGTTGTTTGATTCGTCTCTCTCTGTTCATAAGATCGTAGCTGACTTTGGAGTGTGAAG
TT---TTGCTGTCACGAGTAAATAAAAA-CGAATTTGCAGTTGTTTTTTGTGTTCCTTTGCCTC------GAAAAAGGCT
TCTCGCCCTGCTTTAG----ATATAAAGCAACAACCAAACATCACAACCCAACGAAAACCAGCACCAAACACGACGCTAA
GACACACACAATGCAAGATATAAGGGTGCCAAAGATCAACCACAACACCCTATACAACTCCGAGTATACCACAAATGGAG
ACTAAGCAACACTACAGAGTCGATGGAGCCCACAACCGTGAAAGACACCGCGAAGAAGTGAAGTTGAACGTCGACAAGCC
GTGAGCTCCAAGTTGATGCCTTCAAGAAGATCAAGACACCGAAACGCTACCACTGCCCGATCC-AAAGGATCAAGATTTT
TATCTGAAACACGACACATGATCCGGAGAAACCATGATGGAGACTTCAAGAAGTAGACGACGTCCACGGACGTCGCCTCC
ATCAGCTTAGCCAAAAGCTAGACAAGGTTTTCACCCTGGCACACTCCACCTTCGGTCAGTGAGAGGCAAGACACGAAATC
TCTGGCATACCACCATCACGGAGGCCAACC-ACCAACCACCATGCCGCCCCCACGACCATGGTAACTAGTGTGCACCCGA
GCCCCGGTGTCCGCCCACGAGCACCGCGGCTCCCACCACCAGGGCCGCCATCCAGGAGACCGAGC----------CCATC
CAGGGCCATGGGTGAAGCATTGGTCAACATACCCCAACC-----------------------------------------
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>SNPs
-------S-----------------------------------------S-----------------------S------
SS---------S-------S-S----------------------------------SSS----------S----S-S---
-------------------------------------------------------------SS-----------------
-------------------------S-----------------S-------S-------------S---S----------
------------SS------------------S-S-S----------S---------S----------------------
--------S--S---SS----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------S----------------S-----S------S-------S-------------SS--------
--------S--------------S--------S-------------S------------------------S--------
---------------------------------------------------S------------S---------------
-------------S---------------------------S-------S------------------------------
-S----------S-----S----------------------------------S-----------S--------------
----------------------------------------------------------S---------------------
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----------------------------------------------------------------------------SSS-
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--------S--------------------S-----------S--------------------S-----------------
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----------------------------------------------SS--------------------------------
--------SSS---------------------S---------------------------S-S-------S---------
----S---------S----------------------------S----------------S--S--S-------------
-----------S-SSSSSSSSS-SS-SS-------------------------------S--S-----------------
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--------------------------------------------------------S--S--------------------
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S-------------------------------------------------------------------S-----------
--SSS-------------------------------------S--------------------SSSSSSS----------
--------S------SSSSS------------S--------------S------S----------------------SSS
S---S----S-------S--S----S---------------------S--S--S------------S---------S--S
S---------S--------------------S------------------------S------S----------------
-------S----SS-S-----------------S-------S-S---SS-S---S--------S----------------
S----SS-S------S--------SS-SS-----SS-SS------------------S--------S-------------
------S------SSSS-------------------------S------S-------------S-----SSS-S------
--S-S------------------SS-S-S-S--S-----S------S------S-S-------------SS---------
-----------S-------------------S-S-S-----------S-------S------S--SSSSSSSSSS-----
--S-----S---SS--------S------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_333
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-------------------------------------------------------------------------TGGATCC
GGGTGAATCGAAC-------------------------------------------------------------------
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>reverse_2411
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----------GCTACAGAGTCGATGGAGCC--------------------------------------------------
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