Multiple sequence alignment - TraesCS6B01G032400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G032400 chr6B 100.000 2525 0 0 1 2525 18937675 18935151 0.000000e+00 4663.0
1 TraesCS6B01G032400 chr6D 80.898 1403 112 83 868 2190 10332699 10331373 0.000000e+00 963.0
2 TraesCS6B01G032400 chr6D 84.211 228 25 2 348 567 10338166 10337942 7.080000e-51 211.0
3 TraesCS6B01G032400 chr6A 84.014 882 63 34 653 1510 11791706 11790879 0.000000e+00 776.0
4 TraesCS6B01G032400 chr6A 85.253 217 26 5 2293 2506 11789585 11789372 4.230000e-53 219.0
5 TraesCS6B01G032400 chr7B 85.246 183 22 5 1283 1462 524399834 524400014 1.540000e-42 183.0
6 TraesCS6B01G032400 chr1A 83.019 106 5 7 1293 1397 403663317 403663410 1.610000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G032400 chr6B 18935151 18937675 2524 True 4663.0 4663 100.0000 1 2525 1 chr6B.!!$R1 2524
1 TraesCS6B01G032400 chr6D 10331373 10332699 1326 True 963.0 963 80.8980 868 2190 1 chr6D.!!$R1 1322
2 TraesCS6B01G032400 chr6A 11789372 11791706 2334 True 497.5 776 84.6335 653 2506 2 chr6A.!!$R1 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1013 0.037232 AAAGAAACGGAGCGAGAGGG 60.037 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2067 0.178767 TGATGAGTGGATTGGCTCGG 59.821 55.0 0.0 0.0 34.67 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.447279 TTTTAGAACTCCCTCTAATCCATATGA 57.553 33.333 3.65 0.00 37.66 2.15
48 49 9.447279 TTTAGAACTCCCTCTAATCCATATGAA 57.553 33.333 3.65 0.00 37.66 2.57
49 50 9.621239 TTAGAACTCCCTCTAATCCATATGAAT 57.379 33.333 3.65 0.00 33.84 2.57
50 51 8.517323 AGAACTCCCTCTAATCCATATGAATT 57.483 34.615 3.65 0.00 0.00 2.17
51 52 8.381636 AGAACTCCCTCTAATCCATATGAATTG 58.618 37.037 3.65 0.00 0.00 2.32
52 53 7.639062 ACTCCCTCTAATCCATATGAATTGT 57.361 36.000 3.65 0.00 0.00 2.71
53 54 7.684529 ACTCCCTCTAATCCATATGAATTGTC 58.315 38.462 3.65 0.00 0.00 3.18
54 55 7.293299 ACTCCCTCTAATCCATATGAATTGTCA 59.707 37.037 3.65 0.00 38.41 3.58
55 56 7.453393 TCCCTCTAATCCATATGAATTGTCAC 58.547 38.462 3.65 0.00 36.31 3.67
56 57 6.369890 CCCTCTAATCCATATGAATTGTCACG 59.630 42.308 3.65 0.00 36.31 4.35
57 58 6.369890 CCTCTAATCCATATGAATTGTCACGG 59.630 42.308 3.65 0.00 36.31 4.94
58 59 6.230472 TCTAATCCATATGAATTGTCACGGG 58.770 40.000 3.65 0.00 36.31 5.28
59 60 2.571212 TCCATATGAATTGTCACGGGC 58.429 47.619 3.65 0.00 36.31 6.13
60 61 2.172505 TCCATATGAATTGTCACGGGCT 59.827 45.455 3.65 0.00 36.31 5.19
61 62 2.951642 CCATATGAATTGTCACGGGCTT 59.048 45.455 3.65 0.00 36.31 4.35
62 63 4.133820 CCATATGAATTGTCACGGGCTTA 58.866 43.478 3.65 0.00 36.31 3.09
63 64 4.578516 CCATATGAATTGTCACGGGCTTAA 59.421 41.667 3.65 0.00 36.31 1.85
64 65 5.241506 CCATATGAATTGTCACGGGCTTAAT 59.758 40.000 3.65 0.00 36.31 1.40
65 66 6.429692 CCATATGAATTGTCACGGGCTTAATA 59.570 38.462 3.65 0.00 36.31 0.98
66 67 7.040755 CCATATGAATTGTCACGGGCTTAATAA 60.041 37.037 3.65 0.00 36.31 1.40
67 68 5.811399 TGAATTGTCACGGGCTTAATAAG 57.189 39.130 0.00 0.00 0.00 1.73
68 69 5.250200 TGAATTGTCACGGGCTTAATAAGT 58.750 37.500 1.68 0.00 0.00 2.24
69 70 5.353123 TGAATTGTCACGGGCTTAATAAGTC 59.647 40.000 1.68 0.00 0.00 3.01
70 71 3.965379 TGTCACGGGCTTAATAAGTCA 57.035 42.857 6.96 0.00 33.90 3.41
71 72 3.857052 TGTCACGGGCTTAATAAGTCAG 58.143 45.455 6.96 5.10 33.90 3.51
72 73 2.608090 GTCACGGGCTTAATAAGTCAGC 59.392 50.000 6.96 0.00 33.90 4.26
73 74 1.593006 CACGGGCTTAATAAGTCAGCG 59.407 52.381 6.96 4.55 33.90 5.18
74 75 1.479323 ACGGGCTTAATAAGTCAGCGA 59.521 47.619 6.96 0.00 33.90 4.93
75 76 1.859080 CGGGCTTAATAAGTCAGCGAC 59.141 52.381 6.96 1.15 33.90 5.19
76 77 2.737359 CGGGCTTAATAAGTCAGCGACA 60.737 50.000 6.96 0.00 33.90 4.35
77 78 3.267483 GGGCTTAATAAGTCAGCGACAA 58.733 45.455 6.96 0.43 33.90 3.18
78 79 3.877508 GGGCTTAATAAGTCAGCGACAAT 59.122 43.478 6.96 2.41 33.90 2.71
79 80 4.335594 GGGCTTAATAAGTCAGCGACAATT 59.664 41.667 6.96 10.88 33.90 2.32
80 81 5.526111 GGGCTTAATAAGTCAGCGACAATTA 59.474 40.000 6.96 10.15 33.90 1.40
81 82 6.037830 GGGCTTAATAAGTCAGCGACAATTAA 59.962 38.462 6.96 17.48 34.58 1.40
82 83 7.255139 GGGCTTAATAAGTCAGCGACAATTAAT 60.255 37.037 6.96 0.00 34.91 1.40
83 84 8.770828 GGCTTAATAAGTCAGCGACAATTAATA 58.229 33.333 18.10 6.01 34.91 0.98
84 85 9.582223 GCTTAATAAGTCAGCGACAATTAATAC 57.418 33.333 18.10 13.79 34.91 1.89
90 91 7.624706 AGTCAGCGACAATTAATACTAATCG 57.375 36.000 10.52 0.00 34.60 3.34
91 92 6.641314 AGTCAGCGACAATTAATACTAATCGG 59.359 38.462 10.52 0.00 34.60 4.18
92 93 5.404366 TCAGCGACAATTAATACTAATCGGC 59.596 40.000 0.00 0.00 0.00 5.54
93 94 4.384846 AGCGACAATTAATACTAATCGGCG 59.615 41.667 0.00 0.00 0.00 6.46
94 95 4.433805 GCGACAATTAATACTAATCGGCGG 60.434 45.833 7.21 0.00 0.00 6.13
95 96 4.090930 CGACAATTAATACTAATCGGCGGG 59.909 45.833 7.21 0.00 0.00 6.13
96 97 5.217978 ACAATTAATACTAATCGGCGGGA 57.782 39.130 7.21 0.00 0.00 5.14
97 98 5.235516 ACAATTAATACTAATCGGCGGGAG 58.764 41.667 7.21 4.47 0.00 4.30
98 99 5.221581 ACAATTAATACTAATCGGCGGGAGT 60.222 40.000 7.21 10.62 0.00 3.85
99 100 6.015180 ACAATTAATACTAATCGGCGGGAGTA 60.015 38.462 7.21 12.53 0.00 2.59
100 101 3.930634 AATACTAATCGGCGGGAGTAC 57.069 47.619 7.21 0.00 0.00 2.73
101 102 2.645838 TACTAATCGGCGGGAGTACT 57.354 50.000 7.21 0.00 0.00 2.73
102 103 1.772836 ACTAATCGGCGGGAGTACTT 58.227 50.000 7.21 0.00 0.00 2.24
103 104 2.936202 ACTAATCGGCGGGAGTACTTA 58.064 47.619 7.21 0.00 0.00 2.24
104 105 3.494332 ACTAATCGGCGGGAGTACTTAT 58.506 45.455 7.21 0.00 0.00 1.73
105 106 3.893813 ACTAATCGGCGGGAGTACTTATT 59.106 43.478 7.21 0.00 0.00 1.40
106 107 3.832615 AATCGGCGGGAGTACTTATTT 57.167 42.857 7.21 0.00 0.00 1.40
107 108 3.832615 ATCGGCGGGAGTACTTATTTT 57.167 42.857 7.21 0.00 0.00 1.82
108 109 3.169355 TCGGCGGGAGTACTTATTTTC 57.831 47.619 7.21 0.00 0.00 2.29
109 110 2.762327 TCGGCGGGAGTACTTATTTTCT 59.238 45.455 7.21 0.00 0.00 2.52
110 111 3.196254 TCGGCGGGAGTACTTATTTTCTT 59.804 43.478 7.21 0.00 0.00 2.52
111 112 3.937079 CGGCGGGAGTACTTATTTTCTTT 59.063 43.478 0.00 0.00 0.00 2.52
112 113 4.393990 CGGCGGGAGTACTTATTTTCTTTT 59.606 41.667 0.00 0.00 0.00 2.27
113 114 5.446875 CGGCGGGAGTACTTATTTTCTTTTC 60.447 44.000 0.00 0.00 0.00 2.29
114 115 5.413523 GGCGGGAGTACTTATTTTCTTTTCA 59.586 40.000 0.00 0.00 0.00 2.69
115 116 6.095021 GGCGGGAGTACTTATTTTCTTTTCAT 59.905 38.462 0.00 0.00 0.00 2.57
116 117 7.362660 GGCGGGAGTACTTATTTTCTTTTCATT 60.363 37.037 0.00 0.00 0.00 2.57
117 118 8.027189 GCGGGAGTACTTATTTTCTTTTCATTT 58.973 33.333 0.00 0.00 0.00 2.32
206 207 7.861176 TTTATTGTATTTGAAACTGCGAACC 57.139 32.000 0.00 0.00 0.00 3.62
207 208 4.902443 TTGTATTTGAAACTGCGAACCA 57.098 36.364 0.00 0.00 0.00 3.67
208 209 5.446143 TTGTATTTGAAACTGCGAACCAT 57.554 34.783 0.00 0.00 0.00 3.55
209 210 5.446143 TGTATTTGAAACTGCGAACCATT 57.554 34.783 0.00 0.00 0.00 3.16
210 211 5.837437 TGTATTTGAAACTGCGAACCATTT 58.163 33.333 0.00 0.00 0.00 2.32
211 212 6.276847 TGTATTTGAAACTGCGAACCATTTT 58.723 32.000 0.00 0.00 0.00 1.82
212 213 7.426410 TGTATTTGAAACTGCGAACCATTTTA 58.574 30.769 0.00 0.00 0.00 1.52
213 214 7.921214 TGTATTTGAAACTGCGAACCATTTTAA 59.079 29.630 0.00 0.00 0.00 1.52
214 215 7.778470 ATTTGAAACTGCGAACCATTTTAAA 57.222 28.000 0.00 0.00 0.00 1.52
215 216 7.596749 TTTGAAACTGCGAACCATTTTAAAA 57.403 28.000 2.51 2.51 29.04 1.52
216 217 7.778470 TTGAAACTGCGAACCATTTTAAAAT 57.222 28.000 7.64 7.64 0.00 1.82
217 218 7.171447 TGAAACTGCGAACCATTTTAAAATG 57.829 32.000 27.09 27.09 44.12 2.32
218 219 5.590104 AACTGCGAACCATTTTAAAATGC 57.410 34.783 28.17 19.57 43.38 3.56
219 220 4.881920 ACTGCGAACCATTTTAAAATGCT 58.118 34.783 28.17 19.60 43.38 3.79
220 221 5.296748 ACTGCGAACCATTTTAAAATGCTT 58.703 33.333 28.17 22.79 43.38 3.91
221 222 5.177327 ACTGCGAACCATTTTAAAATGCTTG 59.823 36.000 28.17 21.76 43.38 4.01
222 223 5.053145 TGCGAACCATTTTAAAATGCTTGT 58.947 33.333 28.17 20.11 43.38 3.16
223 224 5.050499 TGCGAACCATTTTAAAATGCTTGTG 60.050 36.000 28.17 19.00 43.38 3.33
224 225 5.176590 GCGAACCATTTTAAAATGCTTGTGA 59.823 36.000 28.17 0.00 43.38 3.58
225 226 6.128580 GCGAACCATTTTAAAATGCTTGTGAT 60.129 34.615 28.17 13.59 43.38 3.06
226 227 7.571059 GCGAACCATTTTAAAATGCTTGTGATT 60.571 33.333 28.17 15.50 43.38 2.57
227 228 7.951565 CGAACCATTTTAAAATGCTTGTGATTC 59.048 33.333 28.17 19.87 43.38 2.52
228 229 8.907222 AACCATTTTAAAATGCTTGTGATTCT 57.093 26.923 28.17 8.88 43.38 2.40
229 230 8.907222 ACCATTTTAAAATGCTTGTGATTCTT 57.093 26.923 28.17 3.03 43.38 2.52
230 231 9.341078 ACCATTTTAAAATGCTTGTGATTCTTT 57.659 25.926 28.17 2.46 43.38 2.52
234 235 8.954950 TTTAAAATGCTTGTGATTCTTTTGGA 57.045 26.923 0.00 0.00 0.00 3.53
235 236 8.954950 TTAAAATGCTTGTGATTCTTTTGGAA 57.045 26.923 0.00 0.00 38.41 3.53
236 237 7.862512 AAAATGCTTGTGATTCTTTTGGAAA 57.137 28.000 0.00 0.00 37.49 3.13
237 238 7.862512 AAATGCTTGTGATTCTTTTGGAAAA 57.137 28.000 0.00 0.00 37.49 2.29
238 239 7.862512 AATGCTTGTGATTCTTTTGGAAAAA 57.137 28.000 0.00 0.00 37.49 1.94
239 240 6.907206 TGCTTGTGATTCTTTTGGAAAAAG 57.093 33.333 6.20 6.20 37.49 2.27
240 241 5.294060 TGCTTGTGATTCTTTTGGAAAAAGC 59.706 36.000 7.45 0.00 38.78 3.51
241 242 5.556947 GCTTGTGATTCTTTTGGAAAAAGCG 60.557 40.000 7.45 0.00 37.49 4.68
242 243 5.255710 TGTGATTCTTTTGGAAAAAGCGA 57.744 34.783 7.45 0.76 37.49 4.93
243 244 5.280945 TGTGATTCTTTTGGAAAAAGCGAG 58.719 37.500 7.45 0.00 37.49 5.03
244 245 4.148871 GTGATTCTTTTGGAAAAAGCGAGC 59.851 41.667 7.45 3.38 37.49 5.03
245 246 3.791973 TTCTTTTGGAAAAAGCGAGCA 57.208 38.095 7.45 0.00 0.00 4.26
246 247 4.320608 TTCTTTTGGAAAAAGCGAGCAT 57.679 36.364 7.45 0.00 0.00 3.79
247 248 4.320608 TCTTTTGGAAAAAGCGAGCATT 57.679 36.364 7.45 0.00 0.00 3.56
248 249 4.692228 TCTTTTGGAAAAAGCGAGCATTT 58.308 34.783 7.45 0.00 0.00 2.32
249 250 5.115480 TCTTTTGGAAAAAGCGAGCATTTT 58.885 33.333 10.24 10.24 30.86 1.82
250 251 5.584251 TCTTTTGGAAAAAGCGAGCATTTTT 59.416 32.000 11.48 12.66 41.32 1.94
253 254 3.688198 GAAAAAGCGAGCATTTTTCGG 57.312 42.857 19.21 0.00 43.07 4.30
254 255 3.305110 GAAAAAGCGAGCATTTTTCGGA 58.695 40.909 19.21 0.00 43.07 4.55
255 256 3.363341 AAAAGCGAGCATTTTTCGGAA 57.637 38.095 0.00 0.00 38.45 4.30
256 257 2.619013 AAGCGAGCATTTTTCGGAAG 57.381 45.000 0.00 0.00 38.45 3.46
257 258 0.804989 AGCGAGCATTTTTCGGAAGG 59.195 50.000 0.00 0.00 38.45 3.46
258 259 0.521735 GCGAGCATTTTTCGGAAGGT 59.478 50.000 0.00 0.00 38.45 3.50
259 260 1.729149 GCGAGCATTTTTCGGAAGGTG 60.729 52.381 0.00 0.00 38.45 4.00
260 261 1.135689 CGAGCATTTTTCGGAAGGTGG 60.136 52.381 0.00 0.00 34.56 4.61
261 262 2.159382 GAGCATTTTTCGGAAGGTGGA 58.841 47.619 0.00 0.00 0.00 4.02
262 263 1.886542 AGCATTTTTCGGAAGGTGGAC 59.113 47.619 0.00 0.00 0.00 4.02
263 264 1.611491 GCATTTTTCGGAAGGTGGACA 59.389 47.619 0.00 0.00 0.00 4.02
264 265 2.231235 GCATTTTTCGGAAGGTGGACAT 59.769 45.455 0.00 0.00 0.00 3.06
265 266 3.306019 GCATTTTTCGGAAGGTGGACATT 60.306 43.478 0.00 0.00 0.00 2.71
266 267 4.799255 GCATTTTTCGGAAGGTGGACATTT 60.799 41.667 0.00 0.00 0.00 2.32
267 268 5.296748 CATTTTTCGGAAGGTGGACATTTT 58.703 37.500 0.00 0.00 0.00 1.82
268 269 5.346181 TTTTTCGGAAGGTGGACATTTTT 57.654 34.783 0.00 0.00 0.00 1.94
315 316 7.678947 AACACAAACATGTTTTGAAATTCCA 57.321 28.000 26.24 0.00 39.86 3.53
316 317 7.678947 ACACAAACATGTTTTGAAATTCCAA 57.321 28.000 26.24 0.00 33.83 3.53
317 318 8.103948 ACACAAACATGTTTTGAAATTCCAAA 57.896 26.923 26.24 0.00 34.56 3.28
318 319 8.571336 ACACAAACATGTTTTGAAATTCCAAAA 58.429 25.926 26.24 0.00 41.92 2.44
319 320 9.570488 CACAAACATGTTTTGAAATTCCAAAAT 57.430 25.926 21.10 0.00 44.63 1.82
378 379 9.923143 ATTGTAAGTATGAACTTTTAAAAGCCC 57.077 29.630 24.60 17.27 43.60 5.19
379 380 8.466617 TGTAAGTATGAACTTTTAAAAGCCCA 57.533 30.769 24.60 21.41 43.60 5.36
380 381 8.573035 TGTAAGTATGAACTTTTAAAAGCCCAG 58.427 33.333 24.60 5.18 43.60 4.45
381 382 7.833285 AAGTATGAACTTTTAAAAGCCCAGA 57.167 32.000 24.60 17.17 43.60 3.86
382 383 7.215719 AGTATGAACTTTTAAAAGCCCAGAC 57.784 36.000 24.60 24.80 39.63 3.51
383 384 6.775629 AGTATGAACTTTTAAAAGCCCAGACA 59.224 34.615 29.18 20.25 39.63 3.41
384 385 5.257082 TGAACTTTTAAAAGCCCAGACAC 57.743 39.130 24.60 9.85 39.63 3.67
385 386 4.707448 TGAACTTTTAAAAGCCCAGACACA 59.293 37.500 24.60 11.80 39.63 3.72
386 387 5.186021 TGAACTTTTAAAAGCCCAGACACAA 59.814 36.000 24.60 0.44 39.63 3.33
387 388 5.669164 ACTTTTAAAAGCCCAGACACAAA 57.331 34.783 24.60 0.00 39.63 2.83
388 389 6.233905 ACTTTTAAAAGCCCAGACACAAAT 57.766 33.333 24.60 1.08 39.63 2.32
389 390 6.649155 ACTTTTAAAAGCCCAGACACAAATT 58.351 32.000 24.60 0.67 39.63 1.82
390 391 7.109501 ACTTTTAAAAGCCCAGACACAAATTT 58.890 30.769 24.60 0.07 39.63 1.82
391 392 7.609918 ACTTTTAAAAGCCCAGACACAAATTTT 59.390 29.630 24.60 0.00 39.63 1.82
392 393 6.917217 TTAAAAGCCCAGACACAAATTTTG 57.083 33.333 7.59 7.59 0.00 2.44
393 394 4.751767 AAAGCCCAGACACAAATTTTGA 57.248 36.364 15.81 0.00 0.00 2.69
394 395 4.751767 AAGCCCAGACACAAATTTTGAA 57.248 36.364 15.81 0.00 0.00 2.69
395 396 4.751767 AGCCCAGACACAAATTTTGAAA 57.248 36.364 15.81 0.00 0.00 2.69
396 397 5.294734 AGCCCAGACACAAATTTTGAAAT 57.705 34.783 15.81 0.76 0.00 2.17
397 398 5.683681 AGCCCAGACACAAATTTTGAAATT 58.316 33.333 15.81 0.00 40.15 1.82
398 399 5.759763 AGCCCAGACACAAATTTTGAAATTC 59.240 36.000 15.81 6.15 37.62 2.17
399 400 5.759763 GCCCAGACACAAATTTTGAAATTCT 59.240 36.000 15.81 8.04 37.62 2.40
400 401 6.293027 GCCCAGACACAAATTTTGAAATTCTG 60.293 38.462 15.81 16.87 37.62 3.02
401 402 6.762661 CCCAGACACAAATTTTGAAATTCTGT 59.237 34.615 15.81 8.11 37.62 3.41
402 403 7.254522 CCCAGACACAAATTTTGAAATTCTGTG 60.255 37.037 23.83 23.83 37.62 3.66
403 404 7.254522 CCAGACACAAATTTTGAAATTCTGTGG 60.255 37.037 26.03 17.71 37.62 4.17
404 405 7.492020 CAGACACAAATTTTGAAATTCTGTGGA 59.508 33.333 26.03 0.00 37.62 4.02
405 406 8.206189 AGACACAAATTTTGAAATTCTGTGGAT 58.794 29.630 26.03 19.01 37.62 3.41
406 407 8.735692 ACACAAATTTTGAAATTCTGTGGATT 57.264 26.923 26.03 15.42 37.62 3.01
407 408 9.176460 ACACAAATTTTGAAATTCTGTGGATTT 57.824 25.926 26.03 15.23 37.62 2.17
453 454 8.845413 AATAAAAATTGCAAAAGCATACCAGA 57.155 26.923 1.71 0.00 0.00 3.86
454 455 8.845413 ATAAAAATTGCAAAAGCATACCAGAA 57.155 26.923 1.71 0.00 0.00 3.02
455 456 6.544038 AAAATTGCAAAAGCATACCAGAAC 57.456 33.333 1.71 0.00 0.00 3.01
456 457 3.658757 TTGCAAAAGCATACCAGAACC 57.341 42.857 0.00 0.00 0.00 3.62
457 458 2.875296 TGCAAAAGCATACCAGAACCT 58.125 42.857 0.00 0.00 0.00 3.50
458 459 3.230134 TGCAAAAGCATACCAGAACCTT 58.770 40.909 0.00 0.00 0.00 3.50
459 460 3.255642 TGCAAAAGCATACCAGAACCTTC 59.744 43.478 0.00 0.00 0.00 3.46
460 461 3.507622 GCAAAAGCATACCAGAACCTTCT 59.492 43.478 0.00 0.00 38.25 2.85
461 462 4.700213 GCAAAAGCATACCAGAACCTTCTA 59.300 41.667 0.00 0.00 35.34 2.10
462 463 5.163713 GCAAAAGCATACCAGAACCTTCTAG 60.164 44.000 0.00 0.00 35.34 2.43
463 464 6.173339 CAAAAGCATACCAGAACCTTCTAGA 58.827 40.000 0.00 0.00 35.34 2.43
464 465 6.374417 AAAGCATACCAGAACCTTCTAGAA 57.626 37.500 4.81 4.81 35.34 2.10
465 466 6.567602 AAGCATACCAGAACCTTCTAGAAT 57.432 37.500 5.44 0.00 35.34 2.40
466 467 5.923204 AGCATACCAGAACCTTCTAGAATG 58.077 41.667 5.44 5.89 35.34 2.67
467 468 5.426833 AGCATACCAGAACCTTCTAGAATGT 59.573 40.000 5.44 6.61 35.34 2.71
468 469 6.069963 AGCATACCAGAACCTTCTAGAATGTT 60.070 38.462 21.61 21.61 35.34 2.71
469 470 6.599638 GCATACCAGAACCTTCTAGAATGTTT 59.400 38.462 22.13 12.09 35.34 2.83
470 471 7.769044 GCATACCAGAACCTTCTAGAATGTTTA 59.231 37.037 22.13 13.49 35.34 2.01
471 472 9.838339 CATACCAGAACCTTCTAGAATGTTTAT 57.162 33.333 22.13 14.75 35.34 1.40
503 504 9.681692 AATAAATCAGTAAAACCCGTACAAAAC 57.318 29.630 0.00 0.00 0.00 2.43
504 505 5.694231 ATCAGTAAAACCCGTACAAAACC 57.306 39.130 0.00 0.00 0.00 3.27
505 506 4.779696 TCAGTAAAACCCGTACAAAACCT 58.220 39.130 0.00 0.00 0.00 3.50
506 507 5.192176 TCAGTAAAACCCGTACAAAACCTT 58.808 37.500 0.00 0.00 0.00 3.50
507 508 5.651576 TCAGTAAAACCCGTACAAAACCTTT 59.348 36.000 0.00 0.00 0.00 3.11
508 509 5.972973 CAGTAAAACCCGTACAAAACCTTTC 59.027 40.000 0.00 0.00 0.00 2.62
509 510 3.696281 AAACCCGTACAAAACCTTTCG 57.304 42.857 0.00 0.00 0.00 3.46
510 511 1.596603 ACCCGTACAAAACCTTTCGG 58.403 50.000 0.00 0.00 38.05 4.30
512 513 2.103941 ACCCGTACAAAACCTTTCGGTA 59.896 45.455 0.00 0.00 44.73 4.02
513 514 2.738314 CCCGTACAAAACCTTTCGGTAG 59.262 50.000 0.00 0.00 44.73 3.18
514 515 2.738314 CCGTACAAAACCTTTCGGTAGG 59.262 50.000 0.00 2.64 44.73 3.18
520 521 1.294459 ACCTTTCGGTAGGTTCGCC 59.706 57.895 3.85 0.00 46.39 5.54
521 522 1.449070 CCTTTCGGTAGGTTCGCCC 60.449 63.158 0.00 0.00 38.27 6.13
522 523 1.294138 CTTTCGGTAGGTTCGCCCA 59.706 57.895 0.00 0.00 38.27 5.36
523 524 0.739813 CTTTCGGTAGGTTCGCCCAG 60.740 60.000 0.00 0.00 38.27 4.45
524 525 1.474332 TTTCGGTAGGTTCGCCCAGT 61.474 55.000 0.00 0.00 38.27 4.00
525 526 2.125673 CGGTAGGTTCGCCCAGTG 60.126 66.667 0.00 0.00 38.27 3.66
526 527 2.267961 GGTAGGTTCGCCCAGTGG 59.732 66.667 0.63 0.63 38.27 4.00
536 537 2.359602 CCCAGTGGCTGCTCTGTG 60.360 66.667 2.61 8.33 0.00 3.66
537 538 3.054503 CCAGTGGCTGCTCTGTGC 61.055 66.667 18.13 0.00 43.25 4.57
546 547 2.171940 GCTCTGTGCAAAGCGACG 59.828 61.111 0.00 0.00 42.31 5.12
547 548 2.856032 CTCTGTGCAAAGCGACGG 59.144 61.111 0.00 0.00 0.00 4.79
548 549 3.300667 CTCTGTGCAAAGCGACGGC 62.301 63.158 0.00 0.00 40.37 5.68
549 550 4.389576 CTGTGCAAAGCGACGGCC 62.390 66.667 0.00 0.00 41.24 6.13
551 552 3.737172 GTGCAAAGCGACGGCCAT 61.737 61.111 2.24 0.00 41.24 4.40
552 553 3.736100 TGCAAAGCGACGGCCATG 61.736 61.111 2.24 0.00 41.24 3.66
554 555 4.481112 CAAAGCGACGGCCATGCC 62.481 66.667 2.24 0.00 46.75 4.40
563 564 2.860971 GGCCATGCCCCTCCCTAT 60.861 66.667 0.00 0.00 44.06 2.57
564 565 2.759795 GCCATGCCCCTCCCTATC 59.240 66.667 0.00 0.00 0.00 2.08
565 566 2.911926 GCCATGCCCCTCCCTATCC 61.912 68.421 0.00 0.00 0.00 2.59
566 567 2.596851 CCATGCCCCTCCCTATCCG 61.597 68.421 0.00 0.00 0.00 4.18
567 568 2.930562 ATGCCCCTCCCTATCCGC 60.931 66.667 0.00 0.00 0.00 5.54
570 571 3.303928 CCCCTCCCTATCCGCGAC 61.304 72.222 8.23 0.00 0.00 5.19
571 572 3.671411 CCCTCCCTATCCGCGACG 61.671 72.222 8.23 0.00 0.00 5.12
572 573 2.593725 CCTCCCTATCCGCGACGA 60.594 66.667 8.23 0.00 0.00 4.20
573 574 2.191513 CCTCCCTATCCGCGACGAA 61.192 63.158 8.23 0.00 0.00 3.85
574 575 1.524863 CCTCCCTATCCGCGACGAAT 61.525 60.000 8.23 0.00 0.00 3.34
575 576 0.109689 CTCCCTATCCGCGACGAATC 60.110 60.000 8.23 0.00 0.00 2.52
576 577 0.820482 TCCCTATCCGCGACGAATCA 60.820 55.000 8.23 0.00 0.00 2.57
577 578 0.663568 CCCTATCCGCGACGAATCAC 60.664 60.000 8.23 0.00 0.00 3.06
578 579 0.311165 CCTATCCGCGACGAATCACT 59.689 55.000 8.23 0.00 0.00 3.41
579 580 1.399572 CTATCCGCGACGAATCACTG 58.600 55.000 8.23 0.00 0.00 3.66
580 581 1.002792 CTATCCGCGACGAATCACTGA 60.003 52.381 8.23 0.00 0.00 3.41
581 582 0.385751 ATCCGCGACGAATCACTGAT 59.614 50.000 8.23 0.00 0.00 2.90
582 583 0.525455 TCCGCGACGAATCACTGATG 60.525 55.000 8.23 0.00 0.00 3.07
583 584 0.802222 CCGCGACGAATCACTGATGT 60.802 55.000 8.23 0.00 0.00 3.06
584 585 1.533129 CCGCGACGAATCACTGATGTA 60.533 52.381 8.23 0.00 0.00 2.29
585 586 2.385315 CGCGACGAATCACTGATGTAT 58.615 47.619 0.00 0.00 0.00 2.29
586 587 2.151924 CGCGACGAATCACTGATGTATG 59.848 50.000 0.00 0.00 0.00 2.39
587 588 3.372060 GCGACGAATCACTGATGTATGA 58.628 45.455 0.00 0.00 0.00 2.15
588 589 3.983988 GCGACGAATCACTGATGTATGAT 59.016 43.478 0.00 0.00 37.14 2.45
589 590 4.445718 GCGACGAATCACTGATGTATGATT 59.554 41.667 0.00 0.00 45.92 2.57
590 591 5.050769 GCGACGAATCACTGATGTATGATTT 60.051 40.000 0.00 0.00 43.85 2.17
591 592 6.510157 GCGACGAATCACTGATGTATGATTTT 60.510 38.462 0.00 0.00 43.85 1.82
592 593 7.401860 CGACGAATCACTGATGTATGATTTTT 58.598 34.615 1.33 0.00 43.85 1.94
615 616 3.849064 TTTTTGCGGGGGTCACTG 58.151 55.556 0.00 0.00 0.00 3.66
616 617 1.227664 TTTTTGCGGGGGTCACTGA 59.772 52.632 0.00 0.00 0.00 3.41
617 618 0.178975 TTTTTGCGGGGGTCACTGAT 60.179 50.000 0.00 0.00 0.00 2.90
618 619 0.893270 TTTTGCGGGGGTCACTGATG 60.893 55.000 0.00 0.00 0.00 3.07
619 620 2.063015 TTTGCGGGGGTCACTGATGT 62.063 55.000 0.00 0.00 0.00 3.06
620 621 1.195442 TTGCGGGGGTCACTGATGTA 61.195 55.000 0.00 0.00 0.00 2.29
621 622 0.980754 TGCGGGGGTCACTGATGTAT 60.981 55.000 0.00 0.00 0.00 2.29
622 623 0.532862 GCGGGGGTCACTGATGTATG 60.533 60.000 0.00 0.00 0.00 2.39
623 624 0.830648 CGGGGGTCACTGATGTATGT 59.169 55.000 0.00 0.00 0.00 2.29
624 625 1.209504 CGGGGGTCACTGATGTATGTT 59.790 52.381 0.00 0.00 0.00 2.71
625 626 2.355716 CGGGGGTCACTGATGTATGTTT 60.356 50.000 0.00 0.00 0.00 2.83
626 627 3.697166 GGGGGTCACTGATGTATGTTTT 58.303 45.455 0.00 0.00 0.00 2.43
627 628 4.086457 GGGGGTCACTGATGTATGTTTTT 58.914 43.478 0.00 0.00 0.00 1.94
628 629 4.082245 GGGGGTCACTGATGTATGTTTTTG 60.082 45.833 0.00 0.00 0.00 2.44
629 630 4.485163 GGGTCACTGATGTATGTTTTTGC 58.515 43.478 0.00 0.00 0.00 3.68
630 631 4.022416 GGGTCACTGATGTATGTTTTTGCA 60.022 41.667 0.00 0.00 0.00 4.08
631 632 5.156355 GGTCACTGATGTATGTTTTTGCAG 58.844 41.667 0.00 0.00 0.00 4.41
632 633 5.278463 GGTCACTGATGTATGTTTTTGCAGT 60.278 40.000 0.00 0.00 35.70 4.40
634 635 4.919168 CACTGATGTATGTTTTTGCAGTGG 59.081 41.667 0.00 0.00 44.67 4.00
635 636 4.826733 ACTGATGTATGTTTTTGCAGTGGA 59.173 37.500 0.00 0.00 34.22 4.02
636 637 5.301551 ACTGATGTATGTTTTTGCAGTGGAA 59.698 36.000 0.00 0.00 34.22 3.53
637 638 6.154203 TGATGTATGTTTTTGCAGTGGAAA 57.846 33.333 5.61 5.61 0.00 3.13
638 639 6.577103 TGATGTATGTTTTTGCAGTGGAAAA 58.423 32.000 17.47 17.47 0.00 2.29
639 640 6.478344 TGATGTATGTTTTTGCAGTGGAAAAC 59.522 34.615 20.58 15.70 42.91 2.43
642 643 2.999355 TGTTTTTGCAGTGGAAAACAGC 59.001 40.909 20.58 14.23 45.54 4.40
643 644 1.919918 TTTTGCAGTGGAAAACAGCG 58.080 45.000 17.47 0.00 43.90 5.18
644 645 0.102120 TTTGCAGTGGAAAACAGCGG 59.898 50.000 7.42 0.00 43.90 5.52
645 646 2.050077 GCAGTGGAAAACAGCGGC 60.050 61.111 0.00 0.00 31.05 6.53
646 647 2.844451 GCAGTGGAAAACAGCGGCA 61.844 57.895 1.45 0.00 31.05 5.69
647 648 1.283793 CAGTGGAAAACAGCGGCAG 59.716 57.895 1.45 0.00 0.00 4.85
648 649 1.898574 AGTGGAAAACAGCGGCAGG 60.899 57.895 1.45 0.00 0.00 4.85
649 650 2.193536 GTGGAAAACAGCGGCAGGT 61.194 57.895 1.45 0.00 0.00 4.00
650 651 1.896660 TGGAAAACAGCGGCAGGTC 60.897 57.895 1.45 0.00 0.00 3.85
651 652 1.600916 GGAAAACAGCGGCAGGTCT 60.601 57.895 1.45 0.00 0.00 3.85
662 663 1.498865 GGCAGGTCTGACGTTGTGTG 61.499 60.000 0.00 0.00 0.00 3.82
669 670 2.203153 GACGTTGTGTGCACCCCT 60.203 61.111 15.69 0.00 0.00 4.79
681 682 1.003355 CACCCCTTGCTCATCGTGT 60.003 57.895 0.00 0.00 0.00 4.49
683 684 1.296392 CCCCTTGCTCATCGTGTCA 59.704 57.895 0.00 0.00 0.00 3.58
686 687 0.247460 CCTTGCTCATCGTGTCAGGA 59.753 55.000 0.00 0.00 0.00 3.86
762 763 3.998672 GTCACGCTCCCGAACCCA 61.999 66.667 0.00 0.00 38.29 4.51
763 764 3.000819 TCACGCTCCCGAACCCAT 61.001 61.111 0.00 0.00 38.29 4.00
781 792 2.263545 CATCCAGCCTCTATCCATCCA 58.736 52.381 0.00 0.00 0.00 3.41
788 799 2.813907 CCTCTATCCATCCATCCGTCT 58.186 52.381 0.00 0.00 0.00 4.18
799 810 3.625632 ATCCGTCTGGGTCTGGCCT 62.626 63.158 3.32 0.00 37.43 5.19
805 816 0.636647 TCTGGGTCTGGCCTATCTCA 59.363 55.000 3.32 0.00 37.43 3.27
819 830 2.129555 ATCTCACCTGCACCACCACC 62.130 60.000 0.00 0.00 0.00 4.61
820 831 3.093172 TCACCTGCACCACCACCA 61.093 61.111 0.00 0.00 0.00 4.17
821 832 2.906897 CACCTGCACCACCACCAC 60.907 66.667 0.00 0.00 0.00 4.16
822 833 4.204028 ACCTGCACCACCACCACC 62.204 66.667 0.00 0.00 0.00 4.61
823 834 4.202574 CCTGCACCACCACCACCA 62.203 66.667 0.00 0.00 0.00 4.17
824 835 2.906897 CTGCACCACCACCACCAC 60.907 66.667 0.00 0.00 0.00 4.16
825 836 4.866224 TGCACCACCACCACCACG 62.866 66.667 0.00 0.00 0.00 4.94
829 840 4.885270 CCACCACCACCACGGCAA 62.885 66.667 0.00 0.00 39.03 4.52
830 841 3.591835 CACCACCACCACGGCAAC 61.592 66.667 0.00 0.00 39.03 4.17
834 845 2.831284 ACCACCACGGCAACCAAC 60.831 61.111 0.00 0.00 39.03 3.77
852 863 3.441572 CCAACCAATCAATCAGTCAGTCC 59.558 47.826 0.00 0.00 0.00 3.85
963 996 2.026822 CCTAGCCAGCCAGAGAAAGAAA 60.027 50.000 0.00 0.00 0.00 2.52
964 997 2.197283 AGCCAGCCAGAGAAAGAAAG 57.803 50.000 0.00 0.00 0.00 2.62
965 998 1.701847 AGCCAGCCAGAGAAAGAAAGA 59.298 47.619 0.00 0.00 0.00 2.52
966 999 2.107204 AGCCAGCCAGAGAAAGAAAGAA 59.893 45.455 0.00 0.00 0.00 2.52
967 1000 2.887152 GCCAGCCAGAGAAAGAAAGAAA 59.113 45.455 0.00 0.00 0.00 2.52
968 1001 3.304996 GCCAGCCAGAGAAAGAAAGAAAC 60.305 47.826 0.00 0.00 0.00 2.78
969 1002 3.058639 CCAGCCAGAGAAAGAAAGAAACG 60.059 47.826 0.00 0.00 0.00 3.60
970 1003 3.058639 CAGCCAGAGAAAGAAAGAAACGG 60.059 47.826 0.00 0.00 0.00 4.44
971 1004 3.139077 GCCAGAGAAAGAAAGAAACGGA 58.861 45.455 0.00 0.00 0.00 4.69
972 1005 3.187432 GCCAGAGAAAGAAAGAAACGGAG 59.813 47.826 0.00 0.00 0.00 4.63
973 1006 3.187432 CCAGAGAAAGAAAGAAACGGAGC 59.813 47.826 0.00 0.00 0.00 4.70
974 1007 3.060602 AGAGAAAGAAAGAAACGGAGCG 58.939 45.455 0.00 0.00 0.00 5.03
975 1008 3.057734 GAGAAAGAAAGAAACGGAGCGA 58.942 45.455 0.00 0.00 0.00 4.93
976 1009 3.060602 AGAAAGAAAGAAACGGAGCGAG 58.939 45.455 0.00 0.00 0.00 5.03
977 1010 2.814280 AAGAAAGAAACGGAGCGAGA 57.186 45.000 0.00 0.00 0.00 4.04
978 1011 2.355717 AGAAAGAAACGGAGCGAGAG 57.644 50.000 0.00 0.00 0.00 3.20
979 1012 1.067495 AGAAAGAAACGGAGCGAGAGG 60.067 52.381 0.00 0.00 0.00 3.69
980 1013 0.037232 AAAGAAACGGAGCGAGAGGG 60.037 55.000 0.00 0.00 0.00 4.30
981 1014 1.889530 AAGAAACGGAGCGAGAGGGG 61.890 60.000 0.00 0.00 0.00 4.79
982 1015 2.283676 AAACGGAGCGAGAGGGGA 60.284 61.111 0.00 0.00 0.00 4.81
983 1016 1.885163 GAAACGGAGCGAGAGGGGAA 61.885 60.000 0.00 0.00 0.00 3.97
1553 1589 1.154225 GCGCGACAAATGTTCCCTG 60.154 57.895 12.10 0.00 0.00 4.45
1555 1591 1.212751 GCGACAAATGTTCCCTGGC 59.787 57.895 0.00 0.00 0.00 4.85
1619 1691 5.592688 TCCTTCTTCTTTCAATTTGTTCCGT 59.407 36.000 0.00 0.00 0.00 4.69
1625 1697 6.055231 TCTTTCAATTTGTTCCGTGTGTAG 57.945 37.500 0.00 0.00 0.00 2.74
1632 1704 5.408880 TTTGTTCCGTGTGTAGATATCCA 57.591 39.130 0.00 0.00 0.00 3.41
1639 1719 4.378563 CCGTGTGTAGATATCCATCGAGTC 60.379 50.000 0.00 0.00 36.20 3.36
1669 1750 2.098117 GGATTTCGAAACTGGCTCCATG 59.902 50.000 13.81 0.00 0.00 3.66
1671 1752 3.410631 TTTCGAAACTGGCTCCATGTA 57.589 42.857 6.47 0.00 0.00 2.29
1672 1753 2.380084 TCGAAACTGGCTCCATGTAC 57.620 50.000 0.00 0.00 0.00 2.90
1673 1754 0.999406 CGAAACTGGCTCCATGTACG 59.001 55.000 0.00 0.00 0.00 3.67
1674 1755 1.671850 CGAAACTGGCTCCATGTACGT 60.672 52.381 0.00 0.00 0.00 3.57
1675 1756 2.000447 GAAACTGGCTCCATGTACGTC 59.000 52.381 0.00 0.00 0.00 4.34
1678 1759 0.807667 CTGGCTCCATGTACGTCTGC 60.808 60.000 0.00 0.00 0.00 4.26
1697 1778 8.627756 CGTCTGCGTTAATTTATTATTAGCAG 57.372 34.615 18.12 18.12 40.95 4.24
1698 1779 8.273557 CGTCTGCGTTAATTTATTATTAGCAGT 58.726 33.333 20.64 0.00 40.72 4.40
1730 1811 5.757099 TTCCCCGAGTCTTTCTTTTATCT 57.243 39.130 0.00 0.00 0.00 1.98
1731 1812 5.340439 TCCCCGAGTCTTTCTTTTATCTC 57.660 43.478 0.00 0.00 0.00 2.75
1736 1817 3.522553 AGTCTTTCTTTTATCTCCGGCG 58.477 45.455 0.00 0.00 0.00 6.46
1742 1823 1.664151 CTTTTATCTCCGGCGGTGTTC 59.336 52.381 27.32 0.00 0.00 3.18
1755 1848 2.733218 TGTTCGGCAGTTCGCTCG 60.733 61.111 0.00 0.00 41.91 5.03
1756 1849 4.135493 GTTCGGCAGTTCGCTCGC 62.135 66.667 0.00 0.00 41.91 5.03
1757 1850 4.357947 TTCGGCAGTTCGCTCGCT 62.358 61.111 0.00 0.00 41.91 4.93
1758 1851 4.778415 TCGGCAGTTCGCTCGCTC 62.778 66.667 0.00 0.00 41.91 5.03
1762 1855 3.540014 CAGTTCGCTCGCTCGCTG 61.540 66.667 0.00 0.00 0.00 5.18
1763 1856 4.785512 AGTTCGCTCGCTCGCTGG 62.786 66.667 0.00 0.00 0.00 4.85
1780 1873 2.644992 GCTGACAAGGCCAAACCG 59.355 61.111 5.01 0.00 46.52 4.44
1781 1874 2.644992 CTGACAAGGCCAAACCGC 59.355 61.111 5.01 0.00 46.52 5.68
1789 1882 2.747855 GCCAAACCGCCAGAGAGG 60.748 66.667 0.00 0.00 39.23 3.69
1807 1900 1.008538 GGCACCAAGAACTTGCACG 60.009 57.895 8.81 0.00 39.16 5.34
1825 1918 3.252215 GCACGAGCACTAGTATCTGAGAT 59.748 47.826 0.00 0.00 41.58 2.75
1831 1924 6.581919 CGAGCACTAGTATCTGAGATTGATTG 59.418 42.308 0.00 0.00 0.00 2.67
1833 1926 8.470657 AGCACTAGTATCTGAGATTGATTGTA 57.529 34.615 0.00 0.00 0.00 2.41
1834 1927 8.575589 AGCACTAGTATCTGAGATTGATTGTAG 58.424 37.037 0.00 0.00 0.00 2.74
1835 1928 7.328249 GCACTAGTATCTGAGATTGATTGTAGC 59.672 40.741 0.00 0.00 0.00 3.58
1839 1936 8.430801 AGTATCTGAGATTGATTGTAGCAAAC 57.569 34.615 0.00 0.00 0.00 2.93
1897 2010 8.829373 AATCTAGATTTTTATCTTGTTGGCCT 57.171 30.769 12.37 0.00 32.36 5.19
1898 2011 7.630242 TCTAGATTTTTATCTTGTTGGCCTG 57.370 36.000 3.32 0.00 32.36 4.85
1899 2012 5.077134 AGATTTTTATCTTGTTGGCCTGC 57.923 39.130 3.32 0.00 0.00 4.85
1900 2013 4.527816 AGATTTTTATCTTGTTGGCCTGCA 59.472 37.500 3.32 0.00 0.00 4.41
1901 2014 4.888326 TTTTTATCTTGTTGGCCTGCAT 57.112 36.364 3.32 0.00 0.00 3.96
1914 2027 2.031919 TGCATTGCGAAGACGGGT 59.968 55.556 3.84 0.00 40.15 5.28
1928 2041 1.380380 CGGGTCGGTAAGGGTAGGT 60.380 63.158 0.00 0.00 0.00 3.08
1937 2050 0.748450 TAAGGGTAGGTCGCCATTCG 59.252 55.000 0.00 0.00 40.15 3.34
1952 2065 2.095567 CCATTCGTTCTGCTTCAACCAG 60.096 50.000 0.00 0.00 0.00 4.00
1953 2066 2.325583 TTCGTTCTGCTTCAACCAGT 57.674 45.000 0.00 0.00 0.00 4.00
1954 2067 1.865865 TCGTTCTGCTTCAACCAGTC 58.134 50.000 0.00 0.00 0.00 3.51
1966 2079 1.488705 AACCAGTCCGAGCCAATCCA 61.489 55.000 0.00 0.00 0.00 3.41
1967 2080 1.450312 CCAGTCCGAGCCAATCCAC 60.450 63.158 0.00 0.00 0.00 4.02
1968 2081 1.599047 CAGTCCGAGCCAATCCACT 59.401 57.895 0.00 0.00 0.00 4.00
1969 2082 0.460987 CAGTCCGAGCCAATCCACTC 60.461 60.000 0.00 0.00 0.00 3.51
1970 2083 0.904865 AGTCCGAGCCAATCCACTCA 60.905 55.000 0.00 0.00 32.98 3.41
1971 2084 0.179000 GTCCGAGCCAATCCACTCAT 59.821 55.000 0.00 0.00 32.98 2.90
1972 2085 0.465705 TCCGAGCCAATCCACTCATC 59.534 55.000 0.00 0.00 32.98 2.92
1973 2086 0.178767 CCGAGCCAATCCACTCATCA 59.821 55.000 0.00 0.00 32.98 3.07
1974 2087 1.407299 CCGAGCCAATCCACTCATCAA 60.407 52.381 0.00 0.00 32.98 2.57
2071 2211 2.248431 GTGAAAGCGACCGTGTGC 59.752 61.111 0.00 0.00 0.00 4.57
2097 2237 3.895025 CAGCCAGTGGATCAACCG 58.105 61.111 15.20 0.00 42.61 4.44
2108 2248 1.657822 GATCAACCGGAGCCTTCTTC 58.342 55.000 9.46 0.00 0.00 2.87
2113 2253 3.191539 CGGAGCCTTCTTCGCAGC 61.192 66.667 0.00 0.00 34.09 5.25
2159 2315 0.457851 GTCCATCCAGAGACCAGACG 59.542 60.000 0.00 0.00 0.00 4.18
2175 2331 2.432628 CGGAGCCACGTGAAGGTC 60.433 66.667 19.30 15.79 0.00 3.85
2177 2333 2.047179 GAGCCACGTGAAGGTCCC 60.047 66.667 19.30 0.00 0.00 4.46
2213 2380 2.050351 CGGGCGTGGACTATAGCG 60.050 66.667 0.00 0.00 0.00 4.26
2216 2383 1.007618 GGCGTGGACTATAGCGGAC 60.008 63.158 0.00 0.00 0.00 4.79
2217 2384 1.370172 GCGTGGACTATAGCGGACG 60.370 63.158 11.66 11.66 0.00 4.79
2218 2385 1.281960 CGTGGACTATAGCGGACGG 59.718 63.158 0.00 0.00 0.00 4.79
2219 2386 1.658673 GTGGACTATAGCGGACGGG 59.341 63.158 0.00 0.00 0.00 5.28
2220 2387 1.529948 TGGACTATAGCGGACGGGG 60.530 63.158 0.00 0.00 0.00 5.73
2221 2388 1.228367 GGACTATAGCGGACGGGGA 60.228 63.158 0.00 0.00 0.00 4.81
2222 2389 1.522302 GGACTATAGCGGACGGGGAC 61.522 65.000 0.00 0.00 0.00 4.46
2301 3055 4.767255 CGGAGGAGCACAGTGCCC 62.767 72.222 22.41 21.03 46.52 5.36
2329 3083 0.179067 AGGTCGCCGTTTCAGTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
2332 3086 0.531974 TCGCCGTTTCAGTTTCAGCT 60.532 50.000 0.00 0.00 0.00 4.24
2337 3091 2.159787 CCGTTTCAGTTTCAGCTGATCG 60.160 50.000 19.04 11.48 43.99 3.69
2339 3093 2.808543 GTTTCAGTTTCAGCTGATCGGT 59.191 45.455 19.04 0.00 43.99 4.69
2340 3094 2.084610 TCAGTTTCAGCTGATCGGTG 57.915 50.000 19.04 12.73 40.23 4.94
2341 3095 1.081892 CAGTTTCAGCTGATCGGTGG 58.918 55.000 19.04 1.75 41.41 4.61
2356 3110 1.417890 CGGTGGATTCAGATAAGGGCT 59.582 52.381 0.00 0.00 0.00 5.19
2358 3112 3.306364 CGGTGGATTCAGATAAGGGCTAG 60.306 52.174 0.00 0.00 0.00 3.42
2359 3113 3.558109 GGTGGATTCAGATAAGGGCTAGC 60.558 52.174 6.04 6.04 0.00 3.42
2360 3114 3.071602 GTGGATTCAGATAAGGGCTAGCA 59.928 47.826 18.24 0.00 0.00 3.49
2365 3119 0.761802 AGATAAGGGCTAGCAGTGGC 59.238 55.000 18.24 0.00 41.61 5.01
2400 3154 2.636207 ATGATGCGATGCGTGCGTTG 62.636 55.000 0.00 0.00 34.24 4.10
2415 3169 1.339929 GCGTTGTCAACAAAGGGGAAT 59.660 47.619 15.79 0.00 37.63 3.01
2418 3172 3.255642 CGTTGTCAACAAAGGGGAATGAT 59.744 43.478 15.79 0.00 37.63 2.45
2422 3176 5.085920 TGTCAACAAAGGGGAATGATTGAT 58.914 37.500 0.00 0.00 0.00 2.57
2432 3186 4.897670 GGGGAATGATTGATTTGAGTGGAT 59.102 41.667 0.00 0.00 0.00 3.41
2433 3187 5.221382 GGGGAATGATTGATTTGAGTGGATG 60.221 44.000 0.00 0.00 0.00 3.51
2437 3191 3.624410 TGATTGATTTGAGTGGATGAGCG 59.376 43.478 0.00 0.00 0.00 5.03
2439 3193 1.338960 TGATTTGAGTGGATGAGCGCA 60.339 47.619 11.47 0.00 0.00 6.09
2467 3221 1.734359 GAATGCGTGAGAGCGACGAC 61.734 60.000 0.00 0.00 39.21 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.447279 TCATATGGATTAGAGGGAGTTCTAAAA 57.553 33.333 2.13 0.00 41.55 1.52
22 23 9.447279 TTCATATGGATTAGAGGGAGTTCTAAA 57.553 33.333 2.13 0.00 41.55 1.85
23 24 9.621239 ATTCATATGGATTAGAGGGAGTTCTAA 57.379 33.333 2.13 0.00 42.20 2.10
24 25 9.621239 AATTCATATGGATTAGAGGGAGTTCTA 57.379 33.333 7.51 0.00 0.00 2.10
25 26 8.381636 CAATTCATATGGATTAGAGGGAGTTCT 58.618 37.037 8.98 0.00 0.00 3.01
26 27 8.160106 ACAATTCATATGGATTAGAGGGAGTTC 58.840 37.037 8.98 0.00 0.00 3.01
27 28 8.050316 ACAATTCATATGGATTAGAGGGAGTT 57.950 34.615 8.98 0.00 0.00 3.01
28 29 7.293299 TGACAATTCATATGGATTAGAGGGAGT 59.707 37.037 8.98 1.51 0.00 3.85
29 30 7.605691 GTGACAATTCATATGGATTAGAGGGAG 59.394 40.741 8.98 0.00 33.11 4.30
30 31 7.453393 GTGACAATTCATATGGATTAGAGGGA 58.547 38.462 8.98 0.00 33.11 4.20
31 32 6.369890 CGTGACAATTCATATGGATTAGAGGG 59.630 42.308 8.98 0.00 33.11 4.30
32 33 6.369890 CCGTGACAATTCATATGGATTAGAGG 59.630 42.308 8.98 5.47 33.11 3.69
33 34 6.369890 CCCGTGACAATTCATATGGATTAGAG 59.630 42.308 8.98 0.37 33.11 2.43
34 35 6.230472 CCCGTGACAATTCATATGGATTAGA 58.770 40.000 8.98 0.00 33.11 2.10
35 36 5.106555 GCCCGTGACAATTCATATGGATTAG 60.107 44.000 8.98 6.74 33.11 1.73
36 37 4.759693 GCCCGTGACAATTCATATGGATTA 59.240 41.667 8.98 0.00 33.11 1.75
37 38 3.569701 GCCCGTGACAATTCATATGGATT 59.430 43.478 3.14 3.14 33.11 3.01
38 39 3.149196 GCCCGTGACAATTCATATGGAT 58.851 45.455 2.13 0.00 33.11 3.41
39 40 2.172505 AGCCCGTGACAATTCATATGGA 59.827 45.455 2.13 0.00 33.11 3.41
40 41 2.575532 AGCCCGTGACAATTCATATGG 58.424 47.619 2.13 0.00 33.11 2.74
41 42 5.749596 TTAAGCCCGTGACAATTCATATG 57.250 39.130 0.00 0.00 33.11 1.78
42 43 7.719633 ACTTATTAAGCCCGTGACAATTCATAT 59.280 33.333 3.28 0.00 33.11 1.78
43 44 7.051623 ACTTATTAAGCCCGTGACAATTCATA 58.948 34.615 3.28 0.00 33.11 2.15
44 45 5.885912 ACTTATTAAGCCCGTGACAATTCAT 59.114 36.000 3.28 0.00 33.11 2.57
45 46 5.250200 ACTTATTAAGCCCGTGACAATTCA 58.750 37.500 3.28 0.00 0.00 2.57
46 47 5.353123 TGACTTATTAAGCCCGTGACAATTC 59.647 40.000 3.28 0.00 0.00 2.17
47 48 5.250200 TGACTTATTAAGCCCGTGACAATT 58.750 37.500 3.28 0.00 0.00 2.32
48 49 4.839121 TGACTTATTAAGCCCGTGACAAT 58.161 39.130 3.28 0.00 0.00 2.71
49 50 4.250464 CTGACTTATTAAGCCCGTGACAA 58.750 43.478 3.28 0.00 0.00 3.18
50 51 3.857052 CTGACTTATTAAGCCCGTGACA 58.143 45.455 3.28 0.00 0.00 3.58
51 52 2.608090 GCTGACTTATTAAGCCCGTGAC 59.392 50.000 3.28 0.00 0.00 3.67
52 53 2.737359 CGCTGACTTATTAAGCCCGTGA 60.737 50.000 3.28 0.00 33.24 4.35
53 54 1.593006 CGCTGACTTATTAAGCCCGTG 59.407 52.381 3.28 0.00 33.24 4.94
54 55 1.479323 TCGCTGACTTATTAAGCCCGT 59.521 47.619 3.28 0.00 33.24 5.28
55 56 1.859080 GTCGCTGACTTATTAAGCCCG 59.141 52.381 3.28 2.26 33.24 6.13
56 57 2.901249 TGTCGCTGACTTATTAAGCCC 58.099 47.619 3.28 0.00 33.24 5.19
57 58 5.485662 AATTGTCGCTGACTTATTAAGCC 57.514 39.130 3.28 0.00 33.24 4.35
58 59 9.582223 GTATTAATTGTCGCTGACTTATTAAGC 57.418 33.333 19.80 15.54 35.52 3.09
64 65 9.177304 CGATTAGTATTAATTGTCGCTGACTTA 57.823 33.333 9.49 0.27 30.03 2.24
65 66 7.169308 CCGATTAGTATTAATTGTCGCTGACTT 59.831 37.037 9.49 1.04 31.32 3.01
66 67 6.641314 CCGATTAGTATTAATTGTCGCTGACT 59.359 38.462 9.49 0.00 31.32 3.41
67 68 6.615839 GCCGATTAGTATTAATTGTCGCTGAC 60.616 42.308 0.00 2.32 31.32 3.51
68 69 5.404366 GCCGATTAGTATTAATTGTCGCTGA 59.596 40.000 0.00 0.00 31.32 4.26
69 70 5.609088 GCCGATTAGTATTAATTGTCGCTG 58.391 41.667 0.00 0.00 31.32 5.18
70 71 4.384846 CGCCGATTAGTATTAATTGTCGCT 59.615 41.667 0.00 0.00 28.77 4.93
71 72 4.433805 CCGCCGATTAGTATTAATTGTCGC 60.434 45.833 3.80 1.50 33.05 5.19
72 73 4.090930 CCCGCCGATTAGTATTAATTGTCG 59.909 45.833 0.00 2.62 33.78 4.35
73 74 5.232463 TCCCGCCGATTAGTATTAATTGTC 58.768 41.667 0.00 0.00 31.32 3.18
74 75 5.217978 TCCCGCCGATTAGTATTAATTGT 57.782 39.130 0.00 0.00 31.32 2.71
75 76 5.235516 ACTCCCGCCGATTAGTATTAATTG 58.764 41.667 0.00 0.00 32.54 2.32
76 77 5.479124 ACTCCCGCCGATTAGTATTAATT 57.521 39.130 0.00 0.00 29.67 1.40
77 78 5.713861 AGTACTCCCGCCGATTAGTATTAAT 59.286 40.000 0.00 0.00 32.19 1.40
78 79 5.072741 AGTACTCCCGCCGATTAGTATTAA 58.927 41.667 0.00 0.00 0.00 1.40
79 80 4.655963 AGTACTCCCGCCGATTAGTATTA 58.344 43.478 0.00 0.00 0.00 0.98
80 81 3.494332 AGTACTCCCGCCGATTAGTATT 58.506 45.455 0.00 0.00 0.00 1.89
81 82 3.151912 AGTACTCCCGCCGATTAGTAT 57.848 47.619 0.00 0.00 0.00 2.12
82 83 2.645838 AGTACTCCCGCCGATTAGTA 57.354 50.000 0.00 0.00 0.00 1.82
83 84 1.772836 AAGTACTCCCGCCGATTAGT 58.227 50.000 0.00 0.00 0.00 2.24
84 85 4.516365 AATAAGTACTCCCGCCGATTAG 57.484 45.455 0.00 0.00 0.00 1.73
85 86 4.942761 AAATAAGTACTCCCGCCGATTA 57.057 40.909 0.00 0.00 0.00 1.75
86 87 3.832615 AAATAAGTACTCCCGCCGATT 57.167 42.857 0.00 0.00 0.00 3.34
87 88 3.387050 AGAAAATAAGTACTCCCGCCGAT 59.613 43.478 0.00 0.00 0.00 4.18
88 89 2.762327 AGAAAATAAGTACTCCCGCCGA 59.238 45.455 0.00 0.00 0.00 5.54
89 90 3.175109 AGAAAATAAGTACTCCCGCCG 57.825 47.619 0.00 0.00 0.00 6.46
90 91 5.413523 TGAAAAGAAAATAAGTACTCCCGCC 59.586 40.000 0.00 0.00 0.00 6.13
91 92 6.490566 TGAAAAGAAAATAAGTACTCCCGC 57.509 37.500 0.00 0.00 0.00 6.13
180 181 8.756864 GGTTCGCAGTTTCAAATACAATAAAAA 58.243 29.630 0.00 0.00 0.00 1.94
181 182 7.921214 TGGTTCGCAGTTTCAAATACAATAAAA 59.079 29.630 0.00 0.00 0.00 1.52
182 183 7.426410 TGGTTCGCAGTTTCAAATACAATAAA 58.574 30.769 0.00 0.00 0.00 1.40
183 184 6.971602 TGGTTCGCAGTTTCAAATACAATAA 58.028 32.000 0.00 0.00 0.00 1.40
184 185 6.561737 TGGTTCGCAGTTTCAAATACAATA 57.438 33.333 0.00 0.00 0.00 1.90
185 186 5.446143 TGGTTCGCAGTTTCAAATACAAT 57.554 34.783 0.00 0.00 0.00 2.71
186 187 4.902443 TGGTTCGCAGTTTCAAATACAA 57.098 36.364 0.00 0.00 0.00 2.41
187 188 5.446143 AATGGTTCGCAGTTTCAAATACA 57.554 34.783 0.00 0.00 0.00 2.29
188 189 6.763303 AAAATGGTTCGCAGTTTCAAATAC 57.237 33.333 0.00 0.00 0.00 1.89
189 190 8.873215 TTTAAAATGGTTCGCAGTTTCAAATA 57.127 26.923 0.00 0.00 0.00 1.40
190 191 7.778470 TTTAAAATGGTTCGCAGTTTCAAAT 57.222 28.000 0.00 0.00 0.00 2.32
191 192 7.596749 TTTTAAAATGGTTCGCAGTTTCAAA 57.403 28.000 0.00 0.00 0.00 2.69
192 193 7.625553 CATTTTAAAATGGTTCGCAGTTTCAA 58.374 30.769 26.58 0.00 41.54 2.69
193 194 6.292596 GCATTTTAAAATGGTTCGCAGTTTCA 60.293 34.615 31.89 0.00 44.54 2.69
194 195 6.070829 GCATTTTAAAATGGTTCGCAGTTTC 58.929 36.000 31.89 14.06 44.54 2.78
195 196 5.984627 GCATTTTAAAATGGTTCGCAGTTT 58.015 33.333 31.89 0.31 44.54 2.66
196 197 5.590104 GCATTTTAAAATGGTTCGCAGTT 57.410 34.783 31.89 0.50 44.54 3.16
208 209 9.388506 TCCAAAAGAATCACAAGCATTTTAAAA 57.611 25.926 2.51 2.51 0.00 1.52
209 210 8.954950 TCCAAAAGAATCACAAGCATTTTAAA 57.045 26.923 0.00 0.00 0.00 1.52
210 211 8.954950 TTCCAAAAGAATCACAAGCATTTTAA 57.045 26.923 0.00 0.00 0.00 1.52
211 212 8.954950 TTTCCAAAAGAATCACAAGCATTTTA 57.045 26.923 0.00 0.00 33.44 1.52
212 213 7.862512 TTTCCAAAAGAATCACAAGCATTTT 57.137 28.000 0.00 0.00 33.44 1.82
213 214 7.862512 TTTTCCAAAAGAATCACAAGCATTT 57.137 28.000 0.00 0.00 33.44 2.32
214 215 7.467675 GCTTTTTCCAAAAGAATCACAAGCATT 60.468 33.333 12.22 0.00 35.61 3.56
215 216 6.017687 GCTTTTTCCAAAAGAATCACAAGCAT 60.018 34.615 12.22 0.00 35.61 3.79
216 217 5.294060 GCTTTTTCCAAAAGAATCACAAGCA 59.706 36.000 12.22 0.00 35.61 3.91
217 218 5.556947 CGCTTTTTCCAAAAGAATCACAAGC 60.557 40.000 12.22 1.95 33.97 4.01
218 219 5.748152 TCGCTTTTTCCAAAAGAATCACAAG 59.252 36.000 12.22 0.00 33.44 3.16
219 220 5.655488 TCGCTTTTTCCAAAAGAATCACAA 58.345 33.333 12.22 0.00 33.44 3.33
220 221 5.255710 TCGCTTTTTCCAAAAGAATCACA 57.744 34.783 12.22 0.00 33.44 3.58
221 222 4.148871 GCTCGCTTTTTCCAAAAGAATCAC 59.851 41.667 12.22 0.00 33.44 3.06
222 223 4.202101 TGCTCGCTTTTTCCAAAAGAATCA 60.202 37.500 12.22 2.67 33.44 2.57
223 224 4.298332 TGCTCGCTTTTTCCAAAAGAATC 58.702 39.130 12.22 0.54 33.44 2.52
224 225 4.320608 TGCTCGCTTTTTCCAAAAGAAT 57.679 36.364 12.22 0.00 33.44 2.40
225 226 3.791973 TGCTCGCTTTTTCCAAAAGAA 57.208 38.095 12.22 0.28 0.00 2.52
226 227 4.320608 AATGCTCGCTTTTTCCAAAAGA 57.679 36.364 12.22 0.00 0.00 2.52
227 228 5.408204 AAAATGCTCGCTTTTTCCAAAAG 57.592 34.783 9.00 4.84 30.74 2.27
228 229 5.501574 CGAAAAATGCTCGCTTTTTCCAAAA 60.502 36.000 20.47 0.00 44.22 2.44
229 230 4.026145 CGAAAAATGCTCGCTTTTTCCAAA 60.026 37.500 20.47 0.00 44.22 3.28
230 231 3.489047 CGAAAAATGCTCGCTTTTTCCAA 59.511 39.130 20.47 0.00 44.22 3.53
231 232 3.049206 CGAAAAATGCTCGCTTTTTCCA 58.951 40.909 20.47 0.00 44.22 3.53
232 233 2.408368 CCGAAAAATGCTCGCTTTTTCC 59.592 45.455 20.47 9.71 44.22 3.13
233 234 3.305110 TCCGAAAAATGCTCGCTTTTTC 58.695 40.909 18.55 18.55 43.90 2.29
234 235 3.363341 TCCGAAAAATGCTCGCTTTTT 57.637 38.095 9.00 9.00 38.23 1.94
235 236 3.308530 CTTCCGAAAAATGCTCGCTTTT 58.691 40.909 0.00 0.00 34.95 2.27
236 237 2.351738 CCTTCCGAAAAATGCTCGCTTT 60.352 45.455 0.00 0.00 34.95 3.51
237 238 1.200020 CCTTCCGAAAAATGCTCGCTT 59.800 47.619 0.00 0.00 34.95 4.68
238 239 0.804989 CCTTCCGAAAAATGCTCGCT 59.195 50.000 0.00 0.00 34.95 4.93
239 240 0.521735 ACCTTCCGAAAAATGCTCGC 59.478 50.000 0.00 0.00 34.95 5.03
240 241 1.135689 CCACCTTCCGAAAAATGCTCG 60.136 52.381 0.00 0.00 36.06 5.03
241 242 2.095212 GTCCACCTTCCGAAAAATGCTC 60.095 50.000 0.00 0.00 0.00 4.26
242 243 1.886542 GTCCACCTTCCGAAAAATGCT 59.113 47.619 0.00 0.00 0.00 3.79
243 244 1.611491 TGTCCACCTTCCGAAAAATGC 59.389 47.619 0.00 0.00 0.00 3.56
244 245 4.519540 AATGTCCACCTTCCGAAAAATG 57.480 40.909 0.00 0.00 0.00 2.32
245 246 5.545063 AAAATGTCCACCTTCCGAAAAAT 57.455 34.783 0.00 0.00 0.00 1.82
246 247 5.346181 AAAAATGTCCACCTTCCGAAAAA 57.654 34.783 0.00 0.00 0.00 1.94
291 292 7.678947 TGGAATTTCAAAACATGTTTGTGTT 57.321 28.000 23.93 14.07 43.78 3.32
292 293 7.678947 TTGGAATTTCAAAACATGTTTGTGT 57.321 28.000 23.93 6.38 35.83 3.72
293 294 8.961294 TTTTGGAATTTCAAAACATGTTTGTG 57.039 26.923 23.93 20.99 40.41 3.33
352 353 9.923143 GGGCTTTTAAAAGTTCATACTTACAAT 57.077 29.630 24.95 0.00 43.74 2.71
353 354 8.915036 TGGGCTTTTAAAAGTTCATACTTACAA 58.085 29.630 24.95 1.40 43.74 2.41
354 355 8.466617 TGGGCTTTTAAAAGTTCATACTTACA 57.533 30.769 24.95 9.62 43.74 2.41
355 356 8.789762 TCTGGGCTTTTAAAAGTTCATACTTAC 58.210 33.333 24.95 7.77 43.74 2.34
356 357 8.789762 GTCTGGGCTTTTAAAAGTTCATACTTA 58.210 33.333 24.95 4.29 43.74 2.24
357 358 7.286775 TGTCTGGGCTTTTAAAAGTTCATACTT 59.713 33.333 24.95 0.00 46.44 2.24
358 359 6.775629 TGTCTGGGCTTTTAAAAGTTCATACT 59.224 34.615 24.95 0.00 38.28 2.12
359 360 6.861572 GTGTCTGGGCTTTTAAAAGTTCATAC 59.138 38.462 24.95 22.31 38.28 2.39
360 361 6.547880 TGTGTCTGGGCTTTTAAAAGTTCATA 59.452 34.615 24.95 14.72 38.28 2.15
361 362 5.362430 TGTGTCTGGGCTTTTAAAAGTTCAT 59.638 36.000 24.95 0.00 38.28 2.57
362 363 4.707448 TGTGTCTGGGCTTTTAAAAGTTCA 59.293 37.500 24.95 20.90 38.28 3.18
363 364 5.257082 TGTGTCTGGGCTTTTAAAAGTTC 57.743 39.130 24.95 18.18 38.28 3.01
364 365 5.669164 TTGTGTCTGGGCTTTTAAAAGTT 57.331 34.783 24.95 0.00 38.28 2.66
365 366 5.669164 TTTGTGTCTGGGCTTTTAAAAGT 57.331 34.783 24.95 0.00 38.28 2.66
366 367 7.552458 AAATTTGTGTCTGGGCTTTTAAAAG 57.448 32.000 21.32 21.32 39.03 2.27
367 368 7.607991 TCAAAATTTGTGTCTGGGCTTTTAAAA 59.392 29.630 5.56 0.00 0.00 1.52
368 369 7.106239 TCAAAATTTGTGTCTGGGCTTTTAAA 58.894 30.769 5.56 0.00 0.00 1.52
369 370 6.644347 TCAAAATTTGTGTCTGGGCTTTTAA 58.356 32.000 5.56 0.00 0.00 1.52
370 371 6.227298 TCAAAATTTGTGTCTGGGCTTTTA 57.773 33.333 5.56 0.00 0.00 1.52
371 372 5.096443 TCAAAATTTGTGTCTGGGCTTTT 57.904 34.783 5.56 0.00 0.00 2.27
372 373 4.751767 TCAAAATTTGTGTCTGGGCTTT 57.248 36.364 5.56 0.00 0.00 3.51
373 374 4.751767 TTCAAAATTTGTGTCTGGGCTT 57.248 36.364 5.56 0.00 0.00 4.35
374 375 4.751767 TTTCAAAATTTGTGTCTGGGCT 57.248 36.364 5.56 0.00 0.00 5.19
375 376 5.759763 AGAATTTCAAAATTTGTGTCTGGGC 59.240 36.000 5.56 0.00 38.64 5.36
376 377 6.762661 ACAGAATTTCAAAATTTGTGTCTGGG 59.237 34.615 21.69 8.62 38.64 4.45
377 378 7.254522 CCACAGAATTTCAAAATTTGTGTCTGG 60.255 37.037 23.34 15.67 40.62 3.86
378 379 7.492020 TCCACAGAATTTCAAAATTTGTGTCTG 59.508 33.333 23.34 18.93 40.62 3.51
379 380 7.555087 TCCACAGAATTTCAAAATTTGTGTCT 58.445 30.769 23.34 9.73 40.62 3.41
380 381 7.769272 TCCACAGAATTTCAAAATTTGTGTC 57.231 32.000 23.34 8.30 40.62 3.67
381 382 8.735692 AATCCACAGAATTTCAAAATTTGTGT 57.264 26.923 23.34 17.52 40.62 3.72
438 439 3.507622 AGAAGGTTCTGGTATGCTTTTGC 59.492 43.478 0.00 0.00 40.25 3.68
439 440 6.173339 TCTAGAAGGTTCTGGTATGCTTTTG 58.827 40.000 2.32 0.00 38.19 2.44
440 441 6.374417 TCTAGAAGGTTCTGGTATGCTTTT 57.626 37.500 2.32 0.00 38.19 2.27
441 442 6.374417 TTCTAGAAGGTTCTGGTATGCTTT 57.626 37.500 0.00 0.00 38.19 3.51
442 443 6.069963 ACATTCTAGAAGGTTCTGGTATGCTT 60.070 38.462 16.72 2.90 42.85 3.91
443 444 5.426833 ACATTCTAGAAGGTTCTGGTATGCT 59.573 40.000 16.72 7.04 42.85 3.79
444 445 5.675538 ACATTCTAGAAGGTTCTGGTATGC 58.324 41.667 16.72 0.00 42.85 3.14
445 446 9.838339 ATAAACATTCTAGAAGGTTCTGGTATG 57.162 33.333 29.62 16.20 43.41 2.39
477 478 9.681692 GTTTTGTACGGGTTTTACTGATTTATT 57.318 29.630 0.00 0.00 0.00 1.40
478 479 8.298854 GGTTTTGTACGGGTTTTACTGATTTAT 58.701 33.333 0.00 0.00 0.00 1.40
479 480 7.501892 AGGTTTTGTACGGGTTTTACTGATTTA 59.498 33.333 0.00 0.00 0.00 1.40
480 481 6.321945 AGGTTTTGTACGGGTTTTACTGATTT 59.678 34.615 0.00 0.00 0.00 2.17
481 482 5.829391 AGGTTTTGTACGGGTTTTACTGATT 59.171 36.000 0.00 0.00 0.00 2.57
482 483 5.379187 AGGTTTTGTACGGGTTTTACTGAT 58.621 37.500 0.00 0.00 0.00 2.90
483 484 4.779696 AGGTTTTGTACGGGTTTTACTGA 58.220 39.130 0.00 0.00 0.00 3.41
484 485 5.503662 AAGGTTTTGTACGGGTTTTACTG 57.496 39.130 0.00 0.00 0.00 2.74
485 486 5.220835 CGAAAGGTTTTGTACGGGTTTTACT 60.221 40.000 0.00 0.00 0.00 2.24
486 487 4.969395 CGAAAGGTTTTGTACGGGTTTTAC 59.031 41.667 0.00 0.00 0.00 2.01
487 488 5.167218 CGAAAGGTTTTGTACGGGTTTTA 57.833 39.130 0.00 0.00 0.00 1.52
488 489 4.031418 CGAAAGGTTTTGTACGGGTTTT 57.969 40.909 0.00 0.00 0.00 2.43
489 490 3.696281 CGAAAGGTTTTGTACGGGTTT 57.304 42.857 0.00 0.00 0.00 3.27
504 505 0.739813 CTGGGCGAACCTACCGAAAG 60.740 60.000 0.00 0.00 41.11 2.62
505 506 1.294138 CTGGGCGAACCTACCGAAA 59.706 57.895 0.00 0.00 41.11 3.46
506 507 1.909781 ACTGGGCGAACCTACCGAA 60.910 57.895 0.00 0.00 41.11 4.30
507 508 2.283388 ACTGGGCGAACCTACCGA 60.283 61.111 0.00 0.00 41.11 4.69
508 509 2.125673 CACTGGGCGAACCTACCG 60.126 66.667 0.00 0.00 41.11 4.02
509 510 2.267961 CCACTGGGCGAACCTACC 59.732 66.667 0.00 0.00 41.11 3.18
519 520 2.359602 CACAGAGCAGCCACTGGG 60.360 66.667 17.77 12.11 38.30 4.45
520 521 3.054503 GCACAGAGCAGCCACTGG 61.055 66.667 17.77 10.09 44.79 4.00
529 530 2.171940 CGTCGCTTTGCACAGAGC 59.828 61.111 3.47 4.95 45.96 4.09
530 531 2.856032 CCGTCGCTTTGCACAGAG 59.144 61.111 3.47 0.00 0.00 3.35
531 532 3.345808 GCCGTCGCTTTGCACAGA 61.346 61.111 3.47 0.00 0.00 3.41
532 533 4.389576 GGCCGTCGCTTTGCACAG 62.390 66.667 0.00 0.00 34.44 3.66
534 535 3.737172 ATGGCCGTCGCTTTGCAC 61.737 61.111 0.00 0.00 34.44 4.57
535 536 3.736100 CATGGCCGTCGCTTTGCA 61.736 61.111 0.00 0.00 34.44 4.08
537 538 4.481112 GGCATGGCCGTCGCTTTG 62.481 66.667 8.35 0.00 39.62 2.77
547 548 2.759795 GATAGGGAGGGGCATGGC 59.240 66.667 11.56 11.56 0.00 4.40
548 549 2.596851 CGGATAGGGAGGGGCATGG 61.597 68.421 0.00 0.00 0.00 3.66
549 550 3.072476 CGGATAGGGAGGGGCATG 58.928 66.667 0.00 0.00 0.00 4.06
550 551 2.930562 GCGGATAGGGAGGGGCAT 60.931 66.667 0.00 0.00 0.00 4.40
553 554 3.303928 GTCGCGGATAGGGAGGGG 61.304 72.222 6.13 0.00 42.76 4.79
554 555 3.671411 CGTCGCGGATAGGGAGGG 61.671 72.222 6.13 0.00 42.76 4.30
555 556 1.524863 ATTCGTCGCGGATAGGGAGG 61.525 60.000 6.13 0.00 45.38 4.30
556 557 0.109689 GATTCGTCGCGGATAGGGAG 60.110 60.000 6.13 0.00 42.76 4.30
557 558 0.820482 TGATTCGTCGCGGATAGGGA 60.820 55.000 6.13 0.00 39.67 4.20
558 559 0.663568 GTGATTCGTCGCGGATAGGG 60.664 60.000 6.13 0.00 0.00 3.53
559 560 0.311165 AGTGATTCGTCGCGGATAGG 59.689 55.000 6.13 0.00 0.00 2.57
560 561 1.002792 TCAGTGATTCGTCGCGGATAG 60.003 52.381 6.13 0.00 0.00 2.08
561 562 1.018910 TCAGTGATTCGTCGCGGATA 58.981 50.000 6.13 0.00 0.00 2.59
562 563 0.385751 ATCAGTGATTCGTCGCGGAT 59.614 50.000 6.13 0.00 31.97 4.18
563 564 0.525455 CATCAGTGATTCGTCGCGGA 60.525 55.000 6.13 0.00 0.00 5.54
564 565 0.802222 ACATCAGTGATTCGTCGCGG 60.802 55.000 6.13 0.00 0.00 6.46
565 566 1.822581 TACATCAGTGATTCGTCGCG 58.177 50.000 1.86 0.00 0.00 5.87
566 567 3.372060 TCATACATCAGTGATTCGTCGC 58.628 45.455 1.86 0.00 0.00 5.19
567 568 6.516478 AAATCATACATCAGTGATTCGTCG 57.484 37.500 1.86 0.00 42.52 5.12
598 599 0.178975 ATCAGTGACCCCCGCAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
599 600 0.893270 CATCAGTGACCCCCGCAAAA 60.893 55.000 0.00 0.00 0.00 2.44
600 601 1.303236 CATCAGTGACCCCCGCAAA 60.303 57.895 0.00 0.00 0.00 3.68
601 602 1.195442 TACATCAGTGACCCCCGCAA 61.195 55.000 0.00 0.00 0.00 4.85
602 603 0.980754 ATACATCAGTGACCCCCGCA 60.981 55.000 0.00 0.00 0.00 5.69
603 604 0.532862 CATACATCAGTGACCCCCGC 60.533 60.000 0.00 0.00 0.00 6.13
604 605 0.830648 ACATACATCAGTGACCCCCG 59.169 55.000 0.00 0.00 0.00 5.73
605 606 3.366052 AAACATACATCAGTGACCCCC 57.634 47.619 0.00 0.00 0.00 5.40
606 607 4.618227 GCAAAAACATACATCAGTGACCCC 60.618 45.833 0.00 0.00 0.00 4.95
607 608 4.022416 TGCAAAAACATACATCAGTGACCC 60.022 41.667 0.00 0.00 0.00 4.46
608 609 5.119931 TGCAAAAACATACATCAGTGACC 57.880 39.130 0.00 0.00 0.00 4.02
609 610 5.762045 ACTGCAAAAACATACATCAGTGAC 58.238 37.500 0.00 0.00 32.77 3.67
611 612 4.919168 CCACTGCAAAAACATACATCAGTG 59.081 41.667 11.27 11.27 45.45 3.66
612 613 4.826733 TCCACTGCAAAAACATACATCAGT 59.173 37.500 0.00 0.00 34.08 3.41
613 614 5.375417 TCCACTGCAAAAACATACATCAG 57.625 39.130 0.00 0.00 0.00 2.90
614 615 5.781210 TTCCACTGCAAAAACATACATCA 57.219 34.783 0.00 0.00 0.00 3.07
615 616 6.478344 TGTTTTCCACTGCAAAAACATACATC 59.522 34.615 18.58 0.00 45.48 3.06
616 617 6.344500 TGTTTTCCACTGCAAAAACATACAT 58.656 32.000 18.58 0.00 45.48 2.29
617 618 5.724328 TGTTTTCCACTGCAAAAACATACA 58.276 33.333 18.58 3.56 45.48 2.29
622 623 3.656651 GCTGTTTTCCACTGCAAAAAC 57.343 42.857 14.68 14.68 46.89 2.43
628 629 2.050077 GCCGCTGTTTTCCACTGC 60.050 61.111 0.00 0.00 44.81 4.40
629 630 1.283793 CTGCCGCTGTTTTCCACTG 59.716 57.895 0.00 0.00 0.00 3.66
630 631 1.898574 CCTGCCGCTGTTTTCCACT 60.899 57.895 0.00 0.00 0.00 4.00
631 632 2.130073 GACCTGCCGCTGTTTTCCAC 62.130 60.000 0.00 0.00 0.00 4.02
632 633 1.896660 GACCTGCCGCTGTTTTCCA 60.897 57.895 0.00 0.00 0.00 3.53
633 634 1.600916 AGACCTGCCGCTGTTTTCC 60.601 57.895 0.00 0.00 0.00 3.13
634 635 0.884704 TCAGACCTGCCGCTGTTTTC 60.885 55.000 0.00 0.00 33.90 2.29
635 636 1.148273 TCAGACCTGCCGCTGTTTT 59.852 52.632 0.00 0.00 33.90 2.43
636 637 1.598130 GTCAGACCTGCCGCTGTTT 60.598 57.895 0.00 0.00 33.90 2.83
637 638 2.031163 GTCAGACCTGCCGCTGTT 59.969 61.111 0.00 0.00 33.90 3.16
638 639 4.363990 CGTCAGACCTGCCGCTGT 62.364 66.667 0.00 0.00 33.90 4.40
639 640 3.865929 AACGTCAGACCTGCCGCTG 62.866 63.158 0.08 0.00 35.10 5.18
640 641 3.616721 AACGTCAGACCTGCCGCT 61.617 61.111 0.08 0.00 35.10 5.52
641 642 3.414700 CAACGTCAGACCTGCCGC 61.415 66.667 0.08 0.00 35.10 6.53
642 643 2.029073 ACAACGTCAGACCTGCCG 59.971 61.111 0.00 0.00 38.00 5.69
643 644 1.227556 ACACAACGTCAGACCTGCC 60.228 57.895 0.00 0.00 0.00 4.85
644 645 1.934463 CACACAACGTCAGACCTGC 59.066 57.895 0.00 0.00 0.00 4.85
645 646 0.809636 TGCACACAACGTCAGACCTG 60.810 55.000 0.00 0.00 0.00 4.00
646 647 0.810031 GTGCACACAACGTCAGACCT 60.810 55.000 13.17 0.00 0.00 3.85
647 648 1.641677 GTGCACACAACGTCAGACC 59.358 57.895 13.17 0.00 0.00 3.85
648 649 1.641677 GGTGCACACAACGTCAGAC 59.358 57.895 20.43 0.00 0.00 3.51
649 650 1.522806 GGGTGCACACAACGTCAGA 60.523 57.895 20.43 0.00 32.66 3.27
650 651 2.542907 GGGGTGCACACAACGTCAG 61.543 63.158 22.94 0.00 32.66 3.51
651 652 2.515057 GGGGTGCACACAACGTCA 60.515 61.111 22.94 0.00 32.66 4.35
669 670 0.678950 TGTCCTGACACGATGAGCAA 59.321 50.000 0.00 0.00 36.21 3.91
675 676 0.969149 TCTGCTTGTCCTGACACGAT 59.031 50.000 7.85 0.00 41.67 3.73
681 682 2.659016 CGCCTCTGCTTGTCCTGA 59.341 61.111 0.00 0.00 34.43 3.86
683 684 1.192146 TAACCGCCTCTGCTTGTCCT 61.192 55.000 0.00 0.00 34.43 3.85
686 687 1.376037 GCTAACCGCCTCTGCTTGT 60.376 57.895 0.00 0.00 34.43 3.16
700 701 2.652095 CCCGTCCTCAACCGGCTAA 61.652 63.158 0.00 0.00 42.87 3.09
748 749 3.782443 GGATGGGTTCGGGAGCGT 61.782 66.667 0.00 0.00 0.00 5.07
758 759 0.268869 TGGATAGAGGCTGGATGGGT 59.731 55.000 0.00 0.00 0.00 4.51
762 763 2.729383 TGGATGGATAGAGGCTGGAT 57.271 50.000 0.00 0.00 0.00 3.41
763 764 2.544721 GATGGATGGATAGAGGCTGGA 58.455 52.381 0.00 0.00 0.00 3.86
781 792 2.238319 TAGGCCAGACCCAGACGGAT 62.238 60.000 5.01 0.00 40.58 4.18
788 799 0.691078 GGTGAGATAGGCCAGACCCA 60.691 60.000 5.01 0.00 40.58 4.51
799 810 0.613260 GTGGTGGTGCAGGTGAGATA 59.387 55.000 0.00 0.00 0.00 1.98
805 816 4.204028 GGTGGTGGTGGTGCAGGT 62.204 66.667 0.00 0.00 0.00 4.00
819 830 1.743321 ATTGGTTGGTTGCCGTGGTG 61.743 55.000 0.00 0.00 0.00 4.17
820 831 1.456705 ATTGGTTGGTTGCCGTGGT 60.457 52.632 0.00 0.00 0.00 4.16
821 832 1.288752 GATTGGTTGGTTGCCGTGG 59.711 57.895 0.00 0.00 0.00 4.94
822 833 0.387202 TTGATTGGTTGGTTGCCGTG 59.613 50.000 0.00 0.00 0.00 4.94
823 834 1.272212 GATTGATTGGTTGGTTGCCGT 59.728 47.619 0.00 0.00 0.00 5.68
824 835 1.271934 TGATTGATTGGTTGGTTGCCG 59.728 47.619 0.00 0.00 0.00 5.69
825 836 2.299867 ACTGATTGATTGGTTGGTTGCC 59.700 45.455 0.00 0.00 0.00 4.52
826 837 3.005684 TGACTGATTGATTGGTTGGTTGC 59.994 43.478 0.00 0.00 0.00 4.17
827 838 4.279169 ACTGACTGATTGATTGGTTGGTTG 59.721 41.667 0.00 0.00 0.00 3.77
828 839 4.473444 ACTGACTGATTGATTGGTTGGTT 58.527 39.130 0.00 0.00 0.00 3.67
829 840 4.074970 GACTGACTGATTGATTGGTTGGT 58.925 43.478 0.00 0.00 0.00 3.67
830 841 3.441572 GGACTGACTGATTGATTGGTTGG 59.558 47.826 0.00 0.00 0.00 3.77
834 845 3.012518 GGTGGACTGACTGATTGATTGG 58.987 50.000 0.00 0.00 0.00 3.16
852 863 1.121407 TGGTGAGTGGAGTGGAGGTG 61.121 60.000 0.00 0.00 0.00 4.00
943 974 3.055530 TCTTTCTTTCTCTGGCTGGCTAG 60.056 47.826 2.00 0.00 0.00 3.42
944 975 2.906389 TCTTTCTTTCTCTGGCTGGCTA 59.094 45.455 2.00 0.00 0.00 3.93
963 996 2.352032 CCCCTCTCGCTCCGTTTCT 61.352 63.158 0.00 0.00 0.00 2.52
964 997 1.885163 TTCCCCTCTCGCTCCGTTTC 61.885 60.000 0.00 0.00 0.00 2.78
965 998 1.911766 TTCCCCTCTCGCTCCGTTT 60.912 57.895 0.00 0.00 0.00 3.60
966 999 2.283676 TTCCCCTCTCGCTCCGTT 60.284 61.111 0.00 0.00 0.00 4.44
967 1000 3.069318 GTTCCCCTCTCGCTCCGT 61.069 66.667 0.00 0.00 0.00 4.69
968 1001 4.194720 CGTTCCCCTCTCGCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
969 1002 3.839432 CCGTTCCCCTCTCGCTCC 61.839 72.222 0.00 0.00 0.00 4.70
970 1003 2.754658 TCCGTTCCCCTCTCGCTC 60.755 66.667 0.00 0.00 0.00 5.03
971 1004 2.756283 CTCCGTTCCCCTCTCGCT 60.756 66.667 0.00 0.00 0.00 4.93
972 1005 3.839432 CCTCCGTTCCCCTCTCGC 61.839 72.222 0.00 0.00 0.00 5.03
973 1006 3.148279 CCCTCCGTTCCCCTCTCG 61.148 72.222 0.00 0.00 0.00 4.04
974 1007 1.758906 CTCCCTCCGTTCCCCTCTC 60.759 68.421 0.00 0.00 0.00 3.20
975 1008 2.364961 CTCCCTCCGTTCCCCTCT 59.635 66.667 0.00 0.00 0.00 3.69
976 1009 2.764547 CCTCCCTCCGTTCCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
1541 1577 1.331214 ACACAGCCAGGGAACATTTG 58.669 50.000 0.00 0.00 0.00 2.32
1543 1579 1.331214 CAACACAGCCAGGGAACATT 58.669 50.000 0.00 0.00 0.00 2.71
1545 1581 1.152777 CCAACACAGCCAGGGAACA 60.153 57.895 0.00 0.00 0.00 3.18
1546 1582 2.564721 GCCAACACAGCCAGGGAAC 61.565 63.158 0.00 0.00 0.00 3.62
1597 1669 6.197096 CACACGGAACAAATTGAAAGAAGAAG 59.803 38.462 0.00 0.00 0.00 2.85
1600 1672 5.339990 ACACACGGAACAAATTGAAAGAAG 58.660 37.500 0.00 0.00 0.00 2.85
1604 1676 6.627395 ATCTACACACGGAACAAATTGAAA 57.373 33.333 0.00 0.00 0.00 2.69
1605 1677 7.065324 GGATATCTACACACGGAACAAATTGAA 59.935 37.037 0.00 0.00 0.00 2.69
1606 1678 6.537301 GGATATCTACACACGGAACAAATTGA 59.463 38.462 0.00 0.00 0.00 2.57
1607 1679 6.315144 TGGATATCTACACACGGAACAAATTG 59.685 38.462 2.05 0.00 0.00 2.32
1609 1681 5.984725 TGGATATCTACACACGGAACAAAT 58.015 37.500 2.05 0.00 0.00 2.32
1619 1691 3.751698 CGGACTCGATGGATATCTACACA 59.248 47.826 2.05 0.00 39.00 3.72
1625 1697 1.835494 TCCCGGACTCGATGGATATC 58.165 55.000 0.73 0.00 39.00 1.63
1632 1704 1.424638 ATCCAAATCCCGGACTCGAT 58.575 50.000 0.73 0.00 39.00 3.59
1639 1719 2.752903 AGTTTCGAAATCCAAATCCCGG 59.247 45.455 14.69 0.00 0.00 5.73
1693 1774 8.449625 AGACTCGGGGAATATATATATACTGCT 58.550 37.037 5.66 0.00 0.00 4.24
1694 1775 8.638629 AGACTCGGGGAATATATATATACTGC 57.361 38.462 5.66 0.00 0.00 4.40
1708 1789 5.338137 GGAGATAAAAGAAAGACTCGGGGAA 60.338 44.000 0.00 0.00 0.00 3.97
1714 1795 3.552294 CGCCGGAGATAAAAGAAAGACTC 59.448 47.826 5.05 0.00 0.00 3.36
1755 1848 3.123620 CCTTGTCAGCCAGCGAGC 61.124 66.667 0.00 0.00 0.00 5.03
1756 1849 3.123620 GCCTTGTCAGCCAGCGAG 61.124 66.667 0.00 0.00 0.00 5.03
1763 1856 2.644992 CGGTTTGGCCTTGTCAGC 59.355 61.111 3.32 0.00 34.25 4.26
1781 1874 0.322008 GTTCTTGGTGCCCTCTCTGG 60.322 60.000 0.00 0.00 0.00 3.86
1782 1875 0.689623 AGTTCTTGGTGCCCTCTCTG 59.310 55.000 0.00 0.00 0.00 3.35
1783 1876 1.072965 CAAGTTCTTGGTGCCCTCTCT 59.927 52.381 4.80 0.00 0.00 3.10
1784 1877 1.528129 CAAGTTCTTGGTGCCCTCTC 58.472 55.000 4.80 0.00 0.00 3.20
1785 1878 0.538287 GCAAGTTCTTGGTGCCCTCT 60.538 55.000 13.35 0.00 31.94 3.69
1786 1879 0.823356 TGCAAGTTCTTGGTGCCCTC 60.823 55.000 13.35 0.00 37.48 4.30
1789 1882 1.008538 CGTGCAAGTTCTTGGTGCC 60.009 57.895 13.35 0.00 37.48 5.01
1807 1900 7.432869 ACAATCAATCTCAGATACTAGTGCTC 58.567 38.462 5.39 2.33 0.00 4.26
1811 1904 8.470657 TGCTACAATCAATCTCAGATACTAGT 57.529 34.615 0.00 0.00 0.00 2.57
1815 1908 7.222805 TCGTTTGCTACAATCAATCTCAGATAC 59.777 37.037 0.00 0.00 0.00 2.24
1825 1918 6.933130 CGAGATTATCGTTTGCTACAATCAA 58.067 36.000 0.00 0.00 46.62 2.57
1886 1999 1.667151 GCAATGCAGGCCAACAAGA 59.333 52.632 5.01 0.00 0.00 3.02
1897 2010 2.031919 ACCCGTCTTCGCAATGCA 59.968 55.556 5.91 0.00 35.54 3.96
1898 2011 2.785258 GACCCGTCTTCGCAATGC 59.215 61.111 0.00 0.00 35.54 3.56
1899 2012 2.452813 CCGACCCGTCTTCGCAATG 61.453 63.158 0.00 0.00 35.06 2.82
1900 2013 1.597797 TACCGACCCGTCTTCGCAAT 61.598 55.000 0.00 0.00 35.06 3.56
1901 2014 1.804396 TTACCGACCCGTCTTCGCAA 61.804 55.000 0.00 0.00 35.06 4.85
1914 2027 1.754234 GGCGACCTACCCTTACCGA 60.754 63.158 0.00 0.00 0.00 4.69
1928 2041 0.320334 TGAAGCAGAACGAATGGCGA 60.320 50.000 0.00 0.00 44.57 5.54
1937 2050 0.868406 CGGACTGGTTGAAGCAGAAC 59.132 55.000 28.68 20.22 45.98 3.01
1952 2065 0.179000 ATGAGTGGATTGGCTCGGAC 59.821 55.000 0.00 0.00 34.67 4.79
1953 2066 0.465705 GATGAGTGGATTGGCTCGGA 59.534 55.000 0.00 0.00 34.67 4.55
1954 2067 0.178767 TGATGAGTGGATTGGCTCGG 59.821 55.000 0.00 0.00 34.67 4.63
1966 2079 1.556911 AGCGGACTGGATTTGATGAGT 59.443 47.619 0.00 0.00 0.00 3.41
1967 2080 2.208431 GAGCGGACTGGATTTGATGAG 58.792 52.381 0.00 0.00 0.00 2.90
1968 2081 1.471501 CGAGCGGACTGGATTTGATGA 60.472 52.381 0.00 0.00 0.00 2.92
1969 2082 0.933097 CGAGCGGACTGGATTTGATG 59.067 55.000 0.00 0.00 0.00 3.07
1970 2083 0.179073 CCGAGCGGACTGGATTTGAT 60.179 55.000 2.00 0.00 37.50 2.57
1971 2084 1.218047 CCGAGCGGACTGGATTTGA 59.782 57.895 2.00 0.00 37.50 2.69
1972 2085 1.218047 TCCGAGCGGACTGGATTTG 59.782 57.895 7.66 0.00 39.76 2.32
1973 2086 3.708210 TCCGAGCGGACTGGATTT 58.292 55.556 7.66 0.00 39.76 2.17
2019 2132 1.660575 CGTATCCGACCATGGCGTC 60.661 63.158 21.61 9.51 35.63 5.19
2028 2168 4.865761 TGCTGCGCCGTATCCGAC 62.866 66.667 4.18 0.00 35.63 4.79
2046 2186 1.797537 GTCGCTTTCACGCATTGGC 60.798 57.895 0.00 0.00 0.00 4.52
2076 2216 1.001764 TTGATCCACTGGCTGGCTG 60.002 57.895 6.56 6.56 40.39 4.85
2077 2217 1.001641 GTTGATCCACTGGCTGGCT 60.002 57.895 2.00 0.00 40.39 4.75
2087 2227 0.909610 AGAAGGCTCCGGTTGATCCA 60.910 55.000 0.00 0.00 31.28 3.41
2088 2228 0.253327 AAGAAGGCTCCGGTTGATCC 59.747 55.000 0.00 0.00 0.00 3.36
2097 2237 2.558554 TACGCTGCGAAGAAGGCTCC 62.559 60.000 30.47 0.00 0.00 4.70
2108 2248 2.716828 CCACACTTCGTACGCTGCG 61.717 63.158 21.91 21.91 0.00 5.18
2113 2253 0.782384 GCTTCACCACACTTCGTACG 59.218 55.000 9.53 9.53 0.00 3.67
2159 2315 2.047179 GGACCTTCACGTGGCTCC 60.047 66.667 17.00 10.43 0.00 4.70
2175 2331 0.388134 CACACGACACGGTAGAAGGG 60.388 60.000 0.00 0.00 0.00 3.95
2177 2333 1.007336 GCCACACGACACGGTAGAAG 61.007 60.000 0.00 0.00 0.00 2.85
2249 2416 4.699522 GACCTTGACGGCCGCCTT 62.700 66.667 28.58 5.49 35.61 4.35
2252 2419 3.423154 CTTGACCTTGACGGCCGC 61.423 66.667 28.58 19.01 35.61 6.53
2253 2420 3.423154 GCTTGACCTTGACGGCCG 61.423 66.667 26.86 26.86 35.61 6.13
2254 2421 3.423154 CGCTTGACCTTGACGGCC 61.423 66.667 0.00 0.00 35.61 6.13
2255 2422 4.090057 GCGCTTGACCTTGACGGC 62.090 66.667 0.00 0.00 35.61 5.68
2257 2424 3.000080 GACGCGCTTGACCTTGACG 62.000 63.158 5.73 0.00 0.00 4.35
2258 2425 2.853914 GACGCGCTTGACCTTGAC 59.146 61.111 5.73 0.00 0.00 3.18
2259 2426 2.733218 CGACGCGCTTGACCTTGA 60.733 61.111 5.73 0.00 0.00 3.02
2260 2427 2.480426 GAACGACGCGCTTGACCTTG 62.480 60.000 5.73 0.00 0.00 3.61
2261 2428 2.279918 AACGACGCGCTTGACCTT 60.280 55.556 5.73 0.00 0.00 3.50
2263 2430 2.717809 GAGAACGACGCGCTTGACC 61.718 63.158 5.73 0.00 0.00 4.02
2264 2431 2.763881 GAGAACGACGCGCTTGAC 59.236 61.111 5.73 0.00 0.00 3.18
2322 3076 1.081892 CCACCGATCAGCTGAAACTG 58.918 55.000 22.50 15.80 39.12 3.16
2323 3077 0.976641 TCCACCGATCAGCTGAAACT 59.023 50.000 22.50 3.78 0.00 2.66
2324 3078 2.029838 ATCCACCGATCAGCTGAAAC 57.970 50.000 22.50 16.41 0.00 2.78
2329 3083 1.489481 TCTGAATCCACCGATCAGCT 58.511 50.000 0.00 0.00 0.00 4.24
2332 3086 3.324846 CCCTTATCTGAATCCACCGATCA 59.675 47.826 0.00 0.00 0.00 2.92
2337 3091 3.558109 GCTAGCCCTTATCTGAATCCACC 60.558 52.174 2.29 0.00 0.00 4.61
2339 3093 3.317406 TGCTAGCCCTTATCTGAATCCA 58.683 45.455 13.29 0.00 0.00 3.41
2340 3094 3.326297 ACTGCTAGCCCTTATCTGAATCC 59.674 47.826 13.29 0.00 0.00 3.01
2341 3095 4.314121 CACTGCTAGCCCTTATCTGAATC 58.686 47.826 13.29 0.00 0.00 2.52
2356 3110 4.715523 GTTGCCCCGCCACTGCTA 62.716 66.667 0.00 0.00 34.43 3.49
2377 3131 2.592574 ACGCATCGCATCATGGGG 60.593 61.111 1.18 0.00 40.25 4.96
2400 3154 5.665916 ATCAATCATTCCCCTTTGTTGAC 57.334 39.130 0.00 0.00 0.00 3.18
2415 3169 3.624410 CGCTCATCCACTCAAATCAATCA 59.376 43.478 0.00 0.00 0.00 2.57
2418 3172 1.739466 GCGCTCATCCACTCAAATCAA 59.261 47.619 0.00 0.00 0.00 2.57
2422 3176 0.955428 GGTGCGCTCATCCACTCAAA 60.955 55.000 9.73 0.00 32.68 2.69
2445 3199 0.299895 GTCGCTCTCACGCATTCATG 59.700 55.000 0.00 0.00 0.00 3.07
2447 3201 1.801512 CGTCGCTCTCACGCATTCA 60.802 57.895 0.00 0.00 0.00 2.57
2467 3221 3.014036 CGTTGAATGATCCGGCCG 58.986 61.111 21.04 21.04 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.