>input_sequence_77444
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------------------------------------------------------------------------ATGGCGAC
GCCGGAGCGCGCGCGAGCGGGCCGCGGCAACGCGACGGCCACCGCCATCGCGACCAACCGGTGGGGGCCCTACTCGGGCG
CGGGCGACTTCGCGGGCAACATGGCCATCATCCTCGCCTCCCTGCTCGCCGCGCTCGCCCTCGCCCTCGCGCTCCACGCC
GGCGTCAGGTGCCTGCTCCGCCGCCGCCGCCT---GCAGCGGGAGGGGCGGGGCGTCGACGGCGCGGCTGAAGGGGACCC
GGAGAAGCCGGCCGTGGCCGAGCCGGCGCCGCCGCCCCCGCTGCCGCCGCTGCTGGTGTACTCGGCGTCCGGGACGCGGC
TGGCGGGCGCGGCGGCGCACGAGTGCGCCATCTGCCTGGCCGAGTTCGCGGACGGCGACGCCGTGCGCGCCATGCCATCC
TGCGGGCACGGCTTCCACGCGCGCTGCATCGAGCGCTGGCTGGCCGTCCCCGCCCCCGCCGCGGGGTCGCGCCGCCCCTC
CTGCCCGACCTGCCGCGCGCCGGCCGCGCCGCCGCCCTGA----------------------------------------
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>chr6B_1_TraesCS6B01G032400
CTAAAGTATAGCAACGGATTTTTTTAGAACTCCCTCTAATCCATATGAATTGTCACGGGCTTAATAAGTCAGCGACAATT
AATACTAATCGGCGGGAGTACTTATTTTCTTTTCATTTAGCCTATTGAAAAAATAACAAAAAGATAATATTATACAAAAG
TGTGAACATATTTTTAGATTTTTTTATTGTATTTGAAACTGCGAACCATTTTAAAATGCTTGTGATTCTTTTGGAAAAAG
CGAGCATTTTTCGGAAGGTGGACATTTTTTGAGCCTTTTTTTGTTTTTTAAAACACAAACATGTTTTGAAATTCCAAAAT
TTCTTGGAAACAAATCAAGAAATAATAATTTTATTGTAAGTATGAACTTTTAAAAGCCCAGACACAAATTTTGAAATTCT
GTGGATTTTTTTTAGAAAATAAAAAATAAATAAAAATTGCAAAAGCATACCAGAACCTTCTAGAATGTTTATATATAAAT
AAATCAGTAAAACCCGTACAAAACCTTTCGGTAGGTTCGCCCAGTGGCTGCTCTGTGCAAAGCGACGGCCATGCCCCTCC
CTATCCGCGACGAATCACTGATGTATGATTTTTTTTTTTTTTTGCGGGGGTCACTGATGTATGTTTTTGCAGTGGAAAAC
AGCGGCAGGTCTGACGTTGTGTGCACCCCTTGCTCATCGTGTCAGGACAAGCAGAGGCGGTTAGCCGGTTGAGGACGGGG
CCGGGAGGATAGGGGGGCATGGCACGTCACGCTCCCGAACCCAT----------CCAGCCTCTATCCATCCATCCGTCTG
GGTCTGGCCTATCTCACCTGCACCACCACCACCACGGCAACCAACCAATCAATCAGTCAGTCCACCTCCACTCCACTCAC
CA--------------------GCACCAGCTAGTGATCCGGGGCGAGCCTCGCTTTCCACGGAGCGCTGCCTGCCGCCGG
AGCACGCGCCAGCCT--AGCCAGCCAGAGAAAGAAAGAAACGGAGCGAGAGGGGAACGGAGGGAGGCCGGGCATGGCGAC
GCCGGAGCGCGCGCGAGCGGGCCGCGGCAACGCGACGGCCACCGCCATCGCGACCAACCGGTGGGGGCCCTACTCGGGCG
CGGGCGACTTCGCGGGCAACATGGCCATCATCCTCGCCTCCCTGCTCGCCGCGCTCGCCCTCGCCCTCGCGCTCCACGCC
GGCGTCAGGTGCCTGCTCCGCCGCCGCCGCCT---GCAGCGGGAGGGGCGGGGCGTCGACGGCGCGGCTGAAGGGGACCC
GGAGAAGCCGGCCGTGGCCGAGCCGGCGCCGCCGCCCCCGCTGCCGCCGCTGCTGGTGTACTCGGCGTCCGGGACGCGGC
TGGCGGGCGCGGCGGCGCACGAGTGCGCCATCTGCCTGGCCGAGTTCGCGGACGGCGACGCCGTGCGCGCCATGCCATCC
TGCGGGCACGGCTTCCACGCGCGCTGCATCGAGCGCTGGCTGGCCGTCCCCGCCCCCGCCGCGGGGTCGCGCCGCCCCTC
CTGCCCGACCTGCCGCGCGCCGGCCGCGCCGCCGCCCTGACGCCCGCCGCGCGCGACAAATGTTCCCTGGCTGTGTTGGC
AAGCGCCCT------------------------------------CTCTCGAGTTCTTCTCTTTTTTCCTTCTTCTTTCA
ATTTGTTCCGTGTGTAGATATCCATCGAG--------TCCGGGATTTGGA-TTTCGAAACTGGCTCCATGTACGTCTGCG
TTAATTTATTATTAGCAGTATATATATATTCCCCGAGTCTTTCTTTTATCTCCGGCGGTGTTCGGCAGTTCGCT------
------CGCTCGCTGGCTGACAAGGCCAAACCGCCAGAGAGGGCACCAAGAACTTGCACGAGCACTAGTATCTGAGATTG
ATTGTAGCA----AACGATAATCTC-GTTTGTTAGATTTT------TATTTGTAAAATC---------TAGATTTTTATC
TTGTTGGCCTGCATTGCGAAGACGGGTCGGTAAGGGTAGGTCGCCATTCGTTCTGCTTCAACCAGTCCGAGCCAATCCAC
TCATCAAATCCAGTCCGCTCGGATATGGCTCGCGGCCACGCCGTCGTCTGCG---------------------------A
CGCCATGGTCGGATACGGCGCAGCAGCCAATGCGTGAAAGCGACCGTGTGCCAGCCAGCCAGCCAGTGGATCAACCGGAG
CCTTCTTCGCAGCG------TAC--GAAGTGTGGTGAAGCTCCTTCCGTCCATCCA--------GAGACCAGACGGAGCC
ACGTGAAGGTCCCTTCTACCGTGT-----------CGTGTGGCGGGCGTGGACTATAGCGGACGGGGACGCCGCCGCTAG
CCGGCCGGTGACCCCAAGGCGGCCGTCAAGGT------------------------------------------------
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--------------------------CAAGCGCGTCGTTCTCGCCGGAGGAGC---------------------------
------ACAGTGCCCGCGGTGGCAGGTCGCCGTTTCAGTTTCAGCTGATCGGTGGATTCAGATAAGGGCTAGCAGTGGCG
GGGCAACCCACCCCATGATGCGATGCGTGCGTTGTCAACAAAGGGGAATGATTGATTTGAGTGGATGAGCGCACCCGGCA
TGAATGCGTGAGAGCGACGACGGCCGGATCATTCAACGCCGTCACATCA---CAGTAAAAAAGCGTTTGTGACGAAGCTT
C
>chr6A_653
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------------GACGTTATGTACACCCCATGCTCGTCGTGCCGGGCCAAGCAGAGGCGGCTAGCCGGTGGAGGACGGAG
GTGAAT-------GGGGCATGGCACGTCGCGCTCCCGACCCCGGATCCAGCCAGCCAGCCTCTATCCATCCGTCCGTCCG
GGTCTGGCCCATCTCGCCTGCACCACCACGG----------CAATCAATCAATCAGTCAGTCGACCTCCACTCCACTCCA
CCAGCCAGTCACTCACTCAGCTGCACCAGCTAGTGCACCGGGGCGAGCCTCGCTTTC-ACGGAGCACTGCCCGCCGCCGC
GCGCTAGCCAGCCAGCCAGCCAGCCAGAGAAAGAAC--------------------CGGAGGGAGGCAGGCCATGGCGAC
GCCGGAGCACGCGCGCGCGGGCCGGGGCAACGCGACGGCCACCGCCATCGCGACCAACCGGTGGGGGCCCTACTCGGGCG
CGGGCGACTTCGCGGGCAACATGGCCATCATCCTCGCCTCCCTGCTCGCCGCGCTCGCGCTCGCCCTCGCGCTCCACGCC
GGCGTCAGGTGCCTGCTCCGCCGCCGCCGGCAACGGCAGCGGCAGGGGCGGGGGGTCGACGGTGTGGA------GGACCC
GGAGAAGCCGGC---------------GCCGCCGCCCCCGCTGCCGCCGCTGCTGGTGTACTCGGCGTCCGGGACGCGGC
TGGCGGGCGCGGCGGCGCACGAGTGCGCCATCTGCCTGGCCGAGTTCGCGGACGGCGACGCCGTGCGCGCCATGCCGGCG
TGCGGCCACGGCTTCCACGCGTGCTGCATCGAGCGGTGGCTCGCCGTGCCCGCCTCCGCCGCC------CGCCGCCCCTC
CTGCCCGACATGCCGCGCGCCGCCCTG-----------------ACGCGCGCGCGAGAGACACCCCCTTGTGGCGTTGCC
AAGCGCTCTGCCTCTGCTTCGCTCCCTCTGGAATTGGATTGCTGCCTCCCGAGTTCTTCTCTTTTTCTTTTTTCC----A
GTCTATTCCGCGTGTAAAAATTCCATCGAGTTCGGGATTCGGGATTTGGG-TTTTCAAGCTGGCTCCATCTT----TGTG
TCGATTTATTTATCAGTAACTAGTCCTCCTCA---AGTCGTTCTTTTATCGACGGCCGTGTTTGGCAGCTCGCT------
------CA--------CCGACAAGGCCAAATCA------AGAGCACAAAGAACTTGCACTGCACT---TATCTGAGACTG
ATTATGATAAGGGAATGATAATCTCAGTTTGTTTGATTTC------TAC----AAAATC---------TAGGATTTTAGT
ACTAATCCAAT-------------------------------------------------------------------G-
-------ATCCAGTCGACTCGGATATGGCTCGCGGCCCG-----------------------------------------
CGCCATGATCGGATACGGCACAGCACCCAATGCGTGAAAGCGACCGTGC--------GCCAGCCAGCCGATCAACCTGAG
GCTTCTTGGCAGTCTAGTCCTACTAGAAGCGTGGTGAAGCTCCTTCCTTGCATCCACA------GAGACCAGACCGAGCC
ACGTGAAGCTTCGGTCTGTCGTGTCGTGTGGCGGGCGTGTGGCGGGCGTGGACTATAGCAGAGCCCACGCGCCGCGCCCA
GGTGTGGCTACGCCGGGGCAAACTTGACAAATTTGATCTATTGACAAAATCAAATCACAGAATGAGCTGTCCGTGAAATT
ATTTTACGCGGCTAATCTTTTTATGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGATAGGCG
CTACACGCCTGGCAGTGTCGCATCCGTGTGATCCGAAAATTACTAAGTCAGTGTGCAGCGCCTGAGAGTTAGGCGTCACA
CTATACAGCGTAGCGCCTAGCTTCTAGGCGTTGCACTAGTGGTTGCATCATTTTGTAGTGCAACCACTAGTGCAGCGCCT
GAGAGCTAGGCGCCACACTATACAGTGCAACACCTAGCTCTTAGGCTCTGCACAATGACTTAGCAACTTTTAGACAGTCT
GGGATGCAACGTTGGTCAGCCATATAGCGTCTATCTGTGAGGCGTTGCATAGTGTAGTATAGCGCCTTTGTGTCGGACGT
CACACAAAAAAGTCACCGCGTGAAATAGTTTCACGGGCAGTTTATTCTGTAATTTAATTTCGTCCACAGGTCAAATTTGT
CAAATTTGCCCTACGCCGGCGGCCGCCAAGCGCGTCGTTCTCGCCGGAGGAGCGTGGGCGCGGTGCCGGCTTGCGCGCGG
ACAGACACAGTGCCGGCAGTGGCAGGTCGCCGTTTGGATTTCGGCCGATCAGGCCATTCAGATAAGGGCAAAATGTGGA-
GGGCAACCCA-CCCATGATGCGATGCGTGCGTTATCAACAAAGGGGAAGGAATGA-TTGAGTGGAGCAGCACGCCCGGTA
CGAATGCGTGAGAGCGACGATGGCCGGATCATTCAACGCCGTCACATCATCACAGTAAAAAA------------------
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>chr6D_868
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-----------------------------------------------------------------------------CAC
CA--------------------GCACCAGCTAGTGAACCGGGGCGAGCCTCGCTTTC-ACGGAGCACTGCCCGCCGCCGC
GTGCT--CCAGCCTGCCAGCCAGCCAGAGAAAGAAC--------------------CGGAGGGAGGCAGGCCATGGCGAC
GCCGGAGCACGCGCACGCGGGCCGGGGCAACGCGACGGCCACCGCCATCGCGACCAACAGGTGGGGGCCCTACTCGGGCG
CGGGCGACTTCGCGGGCAACATGGCCATCATCCTCGCGTCCCTGCTCGCCGCGCTCGCGCTCGCCCTCGCGCTCCACGCC
GGCGTCAGGTGCCTGCTCCGCCGCCGCCGGCAACGGCAGCGGCAGGGGCGGGGCGTCGACGGCGCGGCTGAAGGAGACCC
GGAGAAGCCGGCCGTGGCGGAGCCCGCGCCGCCGCCCCCGCTGCCGCCGCTGCTGGTGTACTCGGCGTCCGGGACGCGGC
TGGCGGGCGCGGCCGCGCACGAGTGCGCCATCTGCCTGGCCGAGTTCGCGGAGGGCGACGCCGTGCGCGCCATGCCGGCG
TGCGGCCACGGCTTCCACGCGCGCTGCATCGAGCGCTGGCTCGCCGTCCCCACCTCCGCCGCAGGGTCACGCCGCCCCTC
CTGCCCCACCTGCCGCGCGCCGGCCGCGCCGCCCTGACGCGGGCACGCGCGCGCGCGAGACATTCCCTTGTTGTGTTGGC
AAGCGCG----CTCCGTTTGGCTCCCT------TTGGATTGCTCCCTCTCGAGTTCTTCTCTTTTTTCTTTTTTC----A
GTTTGTTCCGCGTGTAAATATCCGTCGAG--------TTCGGGATTTGGATTTTCGAAACAGGCTCCATCTT----TGTG
TTAATTTAGTGCTCC--------ATATACTCCCCAGGTCTTTCTTTTATCCACGGCCGTATTTGGCAGCTCGCTCCCACT
CACACTCA--------CTGACAAGGCCAAATTA------AGAGCACCAAGAACTTGCACTAGCGCTATC-----------
---------------TGATAATCTC-GTTTGTTTGATTTGGTTTTATATTTATAAAATATACTACTCGTATATTCTTACC
TTGTTGGTC-----TGCGAAGACGGGCCGGTAAGGGTAGGCCGCCATTCATTCTGCTTCAACCAAGTCGAGCCAATCCG-
-------ATCCAATCCGCTCGGATATGGCTCGTGGCCATGCCGTCGTGGGATACACGATCGAGTCCTTGCTGGACCCTCA
CGCCATGATCGGATACGGCACAGCACACAATGCGCGAAAGCGACCGTGTGGCAGCAGG---GCCAGCCGATCAACC-GAG
CCTTCTTGGCAGTG------TACTAGAAGTGTGGTGAAGCTCCCTCGGTCCCTCCATCCGGACGGAGACCAGACCGAACC
ACGTGAAGGTTGGTTCTATCGTGTC-------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------S---S------S-----S-----S-S--S-------------S--------S--------S-
SS-SSSSSSSSSS---------------S---------S---SS---------------------------S------S-
---------S-----S-------------SSSSSSSSSSSS---S-----------------S-----------------
------------------------------------S--------------------S-------S-----S-------S
SSSSSSSS-SSS-SS--------------------SSSSSSSSSSSSSSSSSSSSS-----------S--S---------
--------S------S--------S-------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------------S-S----------S-------------------------------------
------------------S-----S-------------------------------------------------------
----------------------------------------------------------------------------SS-S
-----S-----------------------------------S------------S-------S-----S-----------
---------------------------------SSSSS-SS-S-SSS---------S-S-SS------S-S---------
------S-------------------------------------------------------------S--S---SSSS-
S---------S-----S------S--------------S------------------------------S-SSSSS--S-
----------SS-SSSSSSS--S-----S-----S---------------SS----S-----S-----S-----------
-------SSSSSSSSS--------------S-SSSSSSS--S-----------------S---S---S---------S--
---S-SSS-------S-----------------S-----S-----------S--------------------------S-
---------SSSSS------------S-------------S--------S--------------SSS-----------SS
SSSSSSS-------------------------------S--------SS-SS----------------------------
-------S-----------S-----S------------------------S----SS---------SS--------S---
-------S----S-------------------------------------------------------------S-----
----------S-S-----S----------------------------------------S--SSSSSSSSS-SS---SSS
SSS-SS-S-SSS--SSS-SSSS-SSSSS-SS-------------------------------------------------
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--------------S--S-----------------SSS----S--S----S-SSS--------------S-SSS----SS
----------S----------------------S--------------S--S---S---------SS---S-S-----S-
S-------------------S-----------------------------------------SSSSSSSSSSSSSSSSSS
S
>forward_1013
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---------------------------------AAAGAAACGGAGCGAGAGGG---------------------------
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>reverse_2067
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------------------------------------------------------------------CCGAGCCAATCCAC
TCATCA--------------------------------------------------------------------------
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