Multiple sequence alignment - TraesCS6B01G011300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G011300 chr6B 100.000 2495 0 0 1 2495 6787542 6785048 0.000000e+00 4608.0
1 TraesCS6B01G011300 chr6B 81.000 500 75 14 999 1488 6802030 6801541 1.810000e-101 379.0
2 TraesCS6B01G011300 chr6B 92.157 51 4 0 602 652 665514755 665514705 3.440000e-09 73.1
3 TraesCS6B01G011300 chr6D 88.622 1248 102 10 290 1521 3422115 3420892 0.000000e+00 1482.0
4 TraesCS6B01G011300 chr6D 88.852 897 70 12 656 1525 3446255 3445362 0.000000e+00 1075.0
5 TraesCS6B01G011300 chr6D 88.361 610 54 8 727 1327 3418616 3418015 0.000000e+00 717.0
6 TraesCS6B01G011300 chr6D 89.130 414 38 3 654 1060 3427493 3427080 2.210000e-140 508.0
7 TraesCS6B01G011300 chr6D 82.109 531 53 21 89 603 3420190 3419686 1.380000e-112 416.0
8 TraesCS6B01G011300 chr6D 77.939 689 101 33 813 1475 3463436 3462773 1.400000e-102 383.0
9 TraesCS6B01G011300 chr6D 80.524 534 71 21 802 1321 3460575 3460061 1.810000e-101 379.0
10 TraesCS6B01G011300 chr6D 88.396 293 28 3 314 606 3427781 3427495 5.110000e-92 348.0
11 TraesCS6B01G011300 chr6D 93.717 191 12 0 2065 2255 149003976 149003786 1.130000e-73 287.0
12 TraesCS6B01G011300 chr6D 92.188 192 13 2 2267 2457 328750342 328750152 1.140000e-68 270.0
13 TraesCS6B01G011300 chr6D 89.706 204 19 1 2056 2259 149006457 149006256 2.460000e-65 259.0
14 TraesCS6B01G011300 chr6D 87.317 205 25 1 230 434 3446900 3446697 1.490000e-57 233.0
15 TraesCS6B01G011300 chr6D 85.116 215 26 5 2 211 3447159 3446946 5.400000e-52 215.0
16 TraesCS6B01G011300 chr6D 91.525 118 5 3 486 601 3446381 3446267 9.240000e-35 158.0
17 TraesCS6B01G011300 chr6D 93.939 99 3 2 1514 1609 450890399 450890497 2.000000e-31 147.0
18 TraesCS6B01G011300 chr6D 81.325 166 25 4 1360 1525 3417908 3417749 2.010000e-26 130.0
19 TraesCS6B01G011300 chr6A 87.587 1144 104 14 725 1847 2222488 2221362 0.000000e+00 1291.0
20 TraesCS6B01G011300 chr6A 78.801 684 95 33 817 1474 2248634 2247975 4.960000e-112 414.0
21 TraesCS6B01G011300 chr6A 82.791 430 53 13 896 1321 2234520 2234108 5.070000e-97 364.0
22 TraesCS6B01G011300 chr6A 82.151 465 43 20 89 538 2223796 2223357 1.820000e-96 363.0
23 TraesCS6B01G011300 chr6A 84.615 221 30 4 2269 2487 277284484 277284266 1.500000e-52 217.0
24 TraesCS6B01G011300 chr6A 92.157 51 4 0 602 652 442400467 442400417 3.440000e-09 73.1
25 TraesCS6B01G011300 chr2D 91.579 190 13 3 2269 2457 609660657 609660470 2.460000e-65 259.0
26 TraesCS6B01G011300 chr2D 91.803 183 11 4 2308 2487 69491517 69491698 4.120000e-63 252.0
27 TraesCS6B01G011300 chr2D 91.813 171 12 2 2315 2484 382182603 382182772 1.150000e-58 237.0
28 TraesCS6B01G011300 chr2D 92.233 103 6 2 1511 1613 422331545 422331645 7.190000e-31 145.0
29 TraesCS6B01G011300 chr2D 85.246 61 7 2 593 652 402713540 402713599 7.450000e-06 62.1
30 TraesCS6B01G011300 chr5D 90.155 193 13 5 2065 2255 355052710 355052522 1.920000e-61 246.0
31 TraesCS6B01G011300 chr5D 87.817 197 18 5 2065 2259 355075471 355075279 2.500000e-55 226.0
32 TraesCS6B01G011300 chr5D 88.021 192 18 5 2065 2255 43225126 43225313 3.230000e-54 222.0
33 TraesCS6B01G011300 chr7D 86.878 221 20 7 2271 2484 433807516 433807298 3.210000e-59 239.0
34 TraesCS6B01G011300 chr7D 88.832 197 16 5 2065 2259 197867693 197867501 1.150000e-58 237.0
35 TraesCS6B01G011300 chr7D 89.062 192 16 5 2065 2255 625105556 625105369 1.490000e-57 233.0
36 TraesCS6B01G011300 chr7D 87.879 198 20 2 2065 2259 567480890 567480694 1.930000e-56 230.0
37 TraesCS6B01G011300 chr7D 88.482 191 16 5 2065 2253 197851561 197851375 2.500000e-55 226.0
38 TraesCS6B01G011300 chr7D 84.889 225 24 9 2271 2487 51803234 51803456 4.180000e-53 219.0
39 TraesCS6B01G011300 chr4D 91.813 171 12 2 2315 2484 483464865 483464696 1.150000e-58 237.0
40 TraesCS6B01G011300 chr4D 95.699 93 3 1 1514 1606 449455609 449455700 5.560000e-32 148.0
41 TraesCS6B01G011300 chr3A 85.388 219 25 6 2272 2484 491195535 491195752 1.160000e-53 220.0
42 TraesCS6B01G011300 chr3B 100.000 85 0 0 1522 1606 719826143 719826059 9.240000e-35 158.0
43 TraesCS6B01G011300 chr2B 96.774 93 2 1 1519 1610 47535334 47535242 1.200000e-33 154.0
44 TraesCS6B01G011300 chr2B 96.774 93 2 1 1519 1610 47637867 47637775 1.200000e-33 154.0
45 TraesCS6B01G011300 chr2B 94.898 98 4 1 1509 1606 620595245 620595341 4.300000e-33 152.0
46 TraesCS6B01G011300 chr2B 91.818 110 7 2 1500 1608 797734202 797734094 4.300000e-33 152.0
47 TraesCS6B01G011300 chr2B 92.157 51 4 0 602 652 743692997 743692947 3.440000e-09 73.1
48 TraesCS6B01G011300 chr5B 93.137 102 5 2 1505 1606 317294339 317294240 5.560000e-32 148.0
49 TraesCS6B01G011300 chr5B 98.000 50 1 0 2267 2316 656932881 656932832 1.230000e-13 87.9
50 TraesCS6B01G011300 chr5B 95.556 45 2 0 598 642 166366137 166366093 3.440000e-09 73.1
51 TraesCS6B01G011300 chr5B 88.889 54 6 0 599 652 18325189 18325242 1.600000e-07 67.6
52 TraesCS6B01G011300 chr1B 80.808 198 14 15 2267 2440 540147324 540147127 1.560000e-27 134.0
53 TraesCS6B01G011300 chr1B 87.059 85 7 4 2267 2349 606482961 606483043 2.640000e-15 93.5
54 TraesCS6B01G011300 chr3D 90.789 76 7 0 10 85 61594077 61594002 4.390000e-18 102.0
55 TraesCS6B01G011300 chr4A 91.837 49 4 0 604 652 666944583 666944631 4.450000e-08 69.4
56 TraesCS6B01G011300 chr2A 87.500 56 7 0 597 652 166854861 166854916 5.760000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G011300 chr6B 6785048 6787542 2494 True 4608.00 4608 100.00000 1 2495 1 chr6B.!!$R1 2494
1 TraesCS6B01G011300 chr6D 3417749 3422115 4366 True 686.25 1482 85.10425 89 1525 4 chr6D.!!$R2 1436
2 TraesCS6B01G011300 chr6D 3427080 3427781 701 True 428.00 508 88.76300 314 1060 2 chr6D.!!$R3 746
3 TraesCS6B01G011300 chr6D 3445362 3447159 1797 True 420.25 1075 88.20250 2 1525 4 chr6D.!!$R4 1523
4 TraesCS6B01G011300 chr6D 3460061 3463436 3375 True 381.00 383 79.23150 802 1475 2 chr6D.!!$R5 673
5 TraesCS6B01G011300 chr6D 149003786 149006457 2671 True 273.00 287 91.71150 2056 2259 2 chr6D.!!$R6 203
6 TraesCS6B01G011300 chr6A 2221362 2223796 2434 True 827.00 1291 84.86900 89 1847 2 chr6A.!!$R5 1758
7 TraesCS6B01G011300 chr6A 2247975 2248634 659 True 414.00 414 78.80100 817 1474 1 chr6A.!!$R2 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 521 0.889994 TGATGGCAATGTGGACTTGC 59.11 50.0 0.0 0.0 46.47 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 7682 0.107268 CATCATGGCGATCTGGACCA 59.893 55.0 0.0 0.0 37.99 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.391227 CAGTTTTGTCCATAAACTTGGTCT 57.609 37.500 0.00 0.00 42.32 3.85
78 79 3.975992 GCACTACATTGCAGAACGG 57.024 52.632 0.00 0.00 42.49 4.44
81 82 2.002586 CACTACATTGCAGAACGGAGG 58.997 52.381 0.00 0.00 0.00 4.30
85 86 1.078143 ATTGCAGAACGGAGGGAGC 60.078 57.895 0.00 0.00 0.00 4.70
87 88 2.050836 TTGCAGAACGGAGGGAGCAA 62.051 55.000 0.00 0.00 39.38 3.91
198 204 4.951715 AGAATATTTGCAAGGCATGTGAGA 59.048 37.500 0.00 0.00 38.76 3.27
211 217 4.159135 GGCATGTGAGAAATGAAATGTCCT 59.841 41.667 0.00 0.00 27.59 3.85
212 218 5.338365 GCATGTGAGAAATGAAATGTCCTC 58.662 41.667 0.00 0.00 27.59 3.71
213 219 5.678107 GCATGTGAGAAATGAAATGTCCTCC 60.678 44.000 0.00 0.00 27.59 4.30
214 220 4.984295 TGTGAGAAATGAAATGTCCTCCA 58.016 39.130 0.00 0.00 27.59 3.86
215 221 5.573219 TGTGAGAAATGAAATGTCCTCCAT 58.427 37.500 0.00 0.00 27.59 3.41
216 222 5.416639 TGTGAGAAATGAAATGTCCTCCATG 59.583 40.000 0.00 0.00 27.59 3.66
217 223 5.649395 GTGAGAAATGAAATGTCCTCCATGA 59.351 40.000 0.00 0.00 27.59 3.07
218 224 6.320672 GTGAGAAATGAAATGTCCTCCATGAT 59.679 38.462 0.00 0.00 27.59 2.45
219 225 6.893554 TGAGAAATGAAATGTCCTCCATGATT 59.106 34.615 0.00 0.00 27.59 2.57
220 226 7.108841 AGAAATGAAATGTCCTCCATGATTG 57.891 36.000 0.00 0.00 27.59 2.67
221 227 6.893554 AGAAATGAAATGTCCTCCATGATTGA 59.106 34.615 0.00 0.00 27.59 2.57
222 228 7.398047 AGAAATGAAATGTCCTCCATGATTGAA 59.602 33.333 0.00 0.00 27.59 2.69
223 229 7.670605 AATGAAATGTCCTCCATGATTGAAT 57.329 32.000 0.00 0.00 32.82 2.57
262 307 3.289211 TAGGAGGAGCCCCCACCA 61.289 66.667 10.91 0.00 46.85 4.17
286 331 1.732259 CAATCCTTTTCGTGTCCTCCG 59.268 52.381 0.00 0.00 0.00 4.63
302 347 5.068460 TGTCCTCCGTGATTGAATTGTTTTT 59.932 36.000 0.00 0.00 0.00 1.94
364 409 5.200368 TCGAGCAACATATCTTATCAGCA 57.800 39.130 0.00 0.00 0.00 4.41
373 418 3.740631 ATCTTATCAGCACGCTCATCA 57.259 42.857 0.00 0.00 0.00 3.07
388 433 2.052690 ATCAGGAGCGTACGTGGCT 61.053 57.895 17.90 14.73 45.00 4.75
406 451 2.093764 GGCTCACACTAGATTCAGCTGT 60.094 50.000 14.67 0.00 0.00 4.40
408 453 3.999663 GCTCACACTAGATTCAGCTGTTT 59.000 43.478 14.67 1.82 0.00 2.83
419 464 3.096489 TCAGCTGTTTTGACCATTTGC 57.904 42.857 14.67 0.00 0.00 3.68
454 499 3.853330 CCGTGTCGCCGCATCTTG 61.853 66.667 0.00 0.00 0.00 3.02
455 500 3.853330 CGTGTCGCCGCATCTTGG 61.853 66.667 0.00 0.00 0.00 3.61
475 521 0.889994 TGATGGCAATGTGGACTTGC 59.110 50.000 0.00 0.00 46.47 4.01
484 807 2.610859 TGGACTTGCCCTCCCTCC 60.611 66.667 0.00 0.00 34.97 4.30
494 820 1.062352 GCCCTCCCTCCCTTAGTCTTA 60.062 57.143 0.00 0.00 0.00 2.10
495 821 2.680251 CCCTCCCTCCCTTAGTCTTAC 58.320 57.143 0.00 0.00 0.00 2.34
737 1812 8.675040 ATGTATGTATATCGTCTGACATTTCG 57.325 34.615 8.73 0.00 34.46 3.46
748 1823 8.382030 TCGTCTGACATTTCGGTATATAACTA 57.618 34.615 8.73 0.00 0.00 2.24
750 1825 8.288208 CGTCTGACATTTCGGTATATAACTAGT 58.712 37.037 8.73 0.00 0.00 2.57
775 1851 2.753452 TGCGTCGAAGAAGATAAGGTCT 59.247 45.455 1.37 0.00 38.59 3.85
780 1856 5.264712 GTCGAAGAAGATAAGGTCTACACG 58.735 45.833 0.00 0.00 39.69 4.49
783 1860 5.163784 CGAAGAAGATAAGGTCTACACGACA 60.164 44.000 0.00 0.00 44.68 4.35
813 1890 7.595502 ACGAATGAGAATTAGGCGACTTTATAG 59.404 37.037 0.00 0.00 43.67 1.31
825 1902 5.050490 GCGACTTTATAGGATGAGAAAGCA 58.950 41.667 0.00 0.00 33.15 3.91
881 1964 3.323403 CCACTGCCTCCTCTCCTATAAAG 59.677 52.174 0.00 0.00 0.00 1.85
930 2029 2.291153 CCATCAACCAATCCACTCCACT 60.291 50.000 0.00 0.00 0.00 4.00
950 2049 2.203422 CCCCGGAGCCAAACACAA 60.203 61.111 0.73 0.00 0.00 3.33
967 2073 2.166254 CACAACAACAAGCTTCCCTGTT 59.834 45.455 0.00 3.71 0.00 3.16
991 2109 6.611613 TTCTTCTTCTCTGCTCAAATCCTA 57.388 37.500 0.00 0.00 0.00 2.94
992 2110 6.805016 TCTTCTTCTCTGCTCAAATCCTAT 57.195 37.500 0.00 0.00 0.00 2.57
1003 2121 5.073554 TGCTCAAATCCTATATCCACCATGT 59.926 40.000 0.00 0.00 0.00 3.21
1053 2171 1.028330 CGGTGCCGGTAGAGAGTGTA 61.028 60.000 1.90 0.00 35.56 2.90
1128 6692 1.675641 GCGCATGTGGGAGGACTTT 60.676 57.895 8.62 0.00 0.00 2.66
1137 6701 0.038310 GGGAGGACTTTGACAAGGGG 59.962 60.000 2.08 0.00 33.82 4.79
1167 6731 2.153945 CGCACGCAACGTACCGTAT 61.154 57.895 12.20 0.00 39.99 3.06
1308 6872 3.755628 GCCACCGCAGACCTCGTA 61.756 66.667 0.00 0.00 34.03 3.43
1375 7033 2.287644 TGCTGATTTATTGATGCGTCGG 59.712 45.455 0.58 0.00 0.00 4.79
1500 7158 0.839277 CCAGCCACCACTGATCCATA 59.161 55.000 0.00 0.00 40.25 2.74
1509 7167 4.035558 CACCACTGATCCATAAATTCCGTG 59.964 45.833 0.00 0.00 0.00 4.94
1526 7187 6.690194 TTCCGTGTCTAGAATAAGTACTCC 57.310 41.667 0.00 0.00 0.00 3.85
1530 7191 5.239087 CGTGTCTAGAATAAGTACTCCCTCC 59.761 48.000 0.00 0.00 0.00 4.30
1533 7194 5.469760 GTCTAGAATAAGTACTCCCTCCGTC 59.530 48.000 0.00 0.00 0.00 4.79
1534 7195 3.564264 AGAATAAGTACTCCCTCCGTCC 58.436 50.000 0.00 0.00 0.00 4.79
1535 7196 2.378378 ATAAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1536 7197 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1541 7202 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1545 7206 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1547 7208 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1549 7210 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1553 7214 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1609 7270 3.108292 GGGACGGAGGGAGTACTAC 57.892 63.158 0.00 0.00 0.00 2.73
1628 7289 9.790344 AGTACTACGATGTAGTATTATCCAACT 57.210 33.333 17.12 8.84 33.23 3.16
1664 7332 2.029470 AGAGGAAGAAGCGTGTTCAGAG 60.029 50.000 11.40 0.00 0.00 3.35
1671 7339 1.181741 AGCGTGTTCAGAGCTGAGGA 61.182 55.000 0.00 0.00 41.13 3.71
1672 7340 0.735632 GCGTGTTCAGAGCTGAGGAG 60.736 60.000 0.00 0.00 41.13 3.69
1673 7341 0.108898 CGTGTTCAGAGCTGAGGAGG 60.109 60.000 0.00 0.00 41.13 4.30
1706 7374 4.524328 CCAAGGAAAAAGAAGGCACTATGT 59.476 41.667 0.00 0.00 38.49 2.29
1716 7384 8.553459 AAAGAAGGCACTATGTATGTATATGC 57.447 34.615 0.00 0.00 38.49 3.14
1717 7385 7.244886 AGAAGGCACTATGTATGTATATGCA 57.755 36.000 0.00 0.00 38.49 3.96
1718 7386 7.099764 AGAAGGCACTATGTATGTATATGCAC 58.900 38.462 0.00 0.00 38.49 4.57
1719 7387 6.611613 AGGCACTATGTATGTATATGCACT 57.388 37.500 0.00 0.00 36.02 4.40
1720 7388 7.009179 AGGCACTATGTATGTATATGCACTT 57.991 36.000 0.00 0.00 36.02 3.16
1721 7389 8.134202 AGGCACTATGTATGTATATGCACTTA 57.866 34.615 0.00 0.00 36.02 2.24
1748 7416 2.237143 CCTGAGTTCTTGGCATGGACTA 59.763 50.000 13.83 3.36 0.00 2.59
1787 7455 7.560368 AGTGCTACTAGCTGAATACTGATTTT 58.440 34.615 9.49 0.00 42.97 1.82
1810 7478 7.953005 TTCCCTTTTATGAATGTATCTTGCA 57.047 32.000 0.00 0.00 0.00 4.08
1821 7489 7.495901 TGAATGTATCTTGCAAAAAGAAACCA 58.504 30.769 0.00 0.00 0.00 3.67
1825 7493 5.739752 ATCTTGCAAAAAGAAACCAAAGC 57.260 34.783 0.00 0.00 0.00 3.51
1832 7500 6.092092 GCAAAAAGAAACCAAAGCAAATGTT 58.908 32.000 0.00 0.00 0.00 2.71
1847 7515 7.530426 AGCAAATGTTTTATTCTTCAGGTCT 57.470 32.000 0.00 0.00 0.00 3.85
1848 7516 7.373493 AGCAAATGTTTTATTCTTCAGGTCTG 58.627 34.615 0.00 0.00 0.00 3.51
1849 7517 6.587608 GCAAATGTTTTATTCTTCAGGTCTGG 59.412 38.462 0.00 0.00 0.00 3.86
1850 7518 7.523709 GCAAATGTTTTATTCTTCAGGTCTGGA 60.524 37.037 0.00 0.00 0.00 3.86
1851 7519 8.359642 CAAATGTTTTATTCTTCAGGTCTGGAA 58.640 33.333 0.00 0.00 0.00 3.53
1852 7520 8.477419 AATGTTTTATTCTTCAGGTCTGGAAA 57.523 30.769 0.00 0.00 0.00 3.13
1853 7521 7.889873 TGTTTTATTCTTCAGGTCTGGAAAA 57.110 32.000 0.00 0.00 0.00 2.29
1854 7522 8.477419 TGTTTTATTCTTCAGGTCTGGAAAAT 57.523 30.769 0.00 0.00 0.00 1.82
1855 7523 8.359642 TGTTTTATTCTTCAGGTCTGGAAAATG 58.640 33.333 0.00 0.00 0.00 2.32
1856 7524 8.360390 GTTTTATTCTTCAGGTCTGGAAAATGT 58.640 33.333 0.00 0.00 0.00 2.71
1857 7525 7.687941 TTATTCTTCAGGTCTGGAAAATGTC 57.312 36.000 0.00 0.00 0.00 3.06
1858 7526 4.705110 TCTTCAGGTCTGGAAAATGTCA 57.295 40.909 0.00 0.00 0.00 3.58
1859 7527 5.047566 TCTTCAGGTCTGGAAAATGTCAA 57.952 39.130 0.00 0.00 0.00 3.18
1860 7528 4.821805 TCTTCAGGTCTGGAAAATGTCAAC 59.178 41.667 0.00 0.00 0.00 3.18
1861 7529 4.437682 TCAGGTCTGGAAAATGTCAACT 57.562 40.909 0.00 0.00 0.00 3.16
1862 7530 5.560722 TCAGGTCTGGAAAATGTCAACTA 57.439 39.130 0.00 0.00 0.00 2.24
1863 7531 5.305585 TCAGGTCTGGAAAATGTCAACTAC 58.694 41.667 0.00 0.00 0.00 2.73
1864 7532 4.152402 CAGGTCTGGAAAATGTCAACTACG 59.848 45.833 0.00 0.00 0.00 3.51
1865 7533 4.062991 GGTCTGGAAAATGTCAACTACGT 58.937 43.478 0.00 0.00 0.00 3.57
1866 7534 5.011329 AGGTCTGGAAAATGTCAACTACGTA 59.989 40.000 0.00 0.00 0.00 3.57
1867 7535 5.697633 GGTCTGGAAAATGTCAACTACGTAA 59.302 40.000 0.00 0.00 0.00 3.18
1868 7536 6.347160 GGTCTGGAAAATGTCAACTACGTAAC 60.347 42.308 0.00 0.00 0.00 2.50
1869 7537 5.403166 TCTGGAAAATGTCAACTACGTAACG 59.597 40.000 0.00 0.00 0.00 3.18
1870 7538 5.049167 TGGAAAATGTCAACTACGTAACGT 58.951 37.500 0.00 0.00 44.35 3.99
1871 7539 5.175491 TGGAAAATGTCAACTACGTAACGTC 59.825 40.000 0.00 0.00 41.54 4.34
1872 7540 5.388786 GGAAAATGTCAACTACGTAACGTCC 60.389 44.000 0.00 0.00 41.54 4.79
1873 7541 4.510038 AATGTCAACTACGTAACGTCCT 57.490 40.909 0.00 0.00 41.54 3.85
1874 7542 5.627499 AATGTCAACTACGTAACGTCCTA 57.373 39.130 0.00 0.00 41.54 2.94
1875 7543 5.627499 ATGTCAACTACGTAACGTCCTAA 57.373 39.130 0.00 0.00 41.54 2.69
1876 7544 5.431420 TGTCAACTACGTAACGTCCTAAA 57.569 39.130 0.00 0.00 41.54 1.85
1877 7545 6.012658 TGTCAACTACGTAACGTCCTAAAT 57.987 37.500 0.00 0.00 41.54 1.40
1878 7546 7.139896 TGTCAACTACGTAACGTCCTAAATA 57.860 36.000 0.00 0.00 41.54 1.40
1879 7547 7.589395 TGTCAACTACGTAACGTCCTAAATAA 58.411 34.615 0.00 0.00 41.54 1.40
1880 7548 8.243426 TGTCAACTACGTAACGTCCTAAATAAT 58.757 33.333 0.00 0.00 41.54 1.28
1881 7549 9.076596 GTCAACTACGTAACGTCCTAAATAATT 57.923 33.333 0.00 0.00 41.54 1.40
1882 7550 9.638239 TCAACTACGTAACGTCCTAAATAATTT 57.362 29.630 0.00 0.00 41.54 1.82
1887 7555 7.894847 ACGTAACGTCCTAAATAATTTTACGG 58.105 34.615 13.28 5.44 42.88 4.02
1888 7556 7.010091 ACGTAACGTCCTAAATAATTTTACGGG 59.990 37.037 13.28 0.34 42.88 5.28
1889 7557 7.010091 CGTAACGTCCTAAATAATTTTACGGGT 59.990 37.037 0.00 0.00 37.79 5.28
1890 7558 7.686438 AACGTCCTAAATAATTTTACGGGTT 57.314 32.000 0.00 0.00 0.00 4.11
1891 7559 8.785329 AACGTCCTAAATAATTTTACGGGTTA 57.215 30.769 0.00 0.00 0.00 2.85
1892 7560 8.785329 ACGTCCTAAATAATTTTACGGGTTAA 57.215 30.769 0.00 0.00 0.00 2.01
1893 7561 9.394767 ACGTCCTAAATAATTTTACGGGTTAAT 57.605 29.630 0.00 0.00 0.00 1.40
1904 7572 8.911918 ATTTTACGGGTTAATAGTGCATATGA 57.088 30.769 6.97 0.00 0.00 2.15
1905 7573 8.734218 TTTTACGGGTTAATAGTGCATATGAA 57.266 30.769 6.97 0.00 0.00 2.57
1906 7574 7.956420 TTACGGGTTAATAGTGCATATGAAG 57.044 36.000 6.97 0.00 0.00 3.02
1907 7575 5.925509 ACGGGTTAATAGTGCATATGAAGT 58.074 37.500 6.97 0.61 0.00 3.01
1908 7576 6.354130 ACGGGTTAATAGTGCATATGAAGTT 58.646 36.000 6.97 0.00 0.00 2.66
1909 7577 6.260050 ACGGGTTAATAGTGCATATGAAGTTG 59.740 38.462 6.97 0.00 0.00 3.16
1910 7578 6.481976 CGGGTTAATAGTGCATATGAAGTTGA 59.518 38.462 6.97 0.00 0.00 3.18
1911 7579 7.518370 CGGGTTAATAGTGCATATGAAGTTGAC 60.518 40.741 6.97 0.00 0.00 3.18
1912 7580 7.282224 GGGTTAATAGTGCATATGAAGTTGACA 59.718 37.037 6.97 0.00 0.00 3.58
1913 7581 8.673711 GGTTAATAGTGCATATGAAGTTGACAA 58.326 33.333 6.97 0.00 0.00 3.18
1916 7584 7.928307 ATAGTGCATATGAAGTTGACAAAGT 57.072 32.000 6.97 0.00 0.00 2.66
1917 7585 6.005583 AGTGCATATGAAGTTGACAAAGTG 57.994 37.500 6.97 0.00 0.00 3.16
1918 7586 5.764686 AGTGCATATGAAGTTGACAAAGTGA 59.235 36.000 6.97 0.00 0.00 3.41
1919 7587 6.432162 AGTGCATATGAAGTTGACAAAGTGAT 59.568 34.615 6.97 0.00 0.00 3.06
1920 7588 6.744537 GTGCATATGAAGTTGACAAAGTGATC 59.255 38.462 6.97 0.00 0.00 2.92
1921 7589 6.430616 TGCATATGAAGTTGACAAAGTGATCA 59.569 34.615 6.97 0.00 0.00 2.92
1922 7590 7.121611 TGCATATGAAGTTGACAAAGTGATCAT 59.878 33.333 6.97 0.00 0.00 2.45
1923 7591 7.431376 GCATATGAAGTTGACAAAGTGATCATG 59.569 37.037 6.97 0.00 0.00 3.07
1924 7592 6.889301 ATGAAGTTGACAAAGTGATCATGT 57.111 33.333 0.00 0.00 0.00 3.21
1925 7593 6.063640 TGAAGTTGACAAAGTGATCATGTG 57.936 37.500 5.18 3.79 0.00 3.21
1926 7594 4.494350 AGTTGACAAAGTGATCATGTGC 57.506 40.909 5.18 0.00 0.00 4.57
1927 7595 4.139786 AGTTGACAAAGTGATCATGTGCT 58.860 39.130 5.18 0.00 0.00 4.40
1928 7596 5.308014 AGTTGACAAAGTGATCATGTGCTA 58.692 37.500 5.18 0.00 0.00 3.49
1929 7597 5.180117 AGTTGACAAAGTGATCATGTGCTAC 59.820 40.000 5.18 5.09 0.00 3.58
1930 7598 4.002982 TGACAAAGTGATCATGTGCTACC 58.997 43.478 5.18 0.00 0.00 3.18
1931 7599 3.002791 ACAAAGTGATCATGTGCTACCG 58.997 45.455 0.00 0.00 0.00 4.02
1932 7600 3.261580 CAAAGTGATCATGTGCTACCGA 58.738 45.455 0.00 0.00 0.00 4.69
1933 7601 3.827008 AAGTGATCATGTGCTACCGAT 57.173 42.857 0.00 0.00 0.00 4.18
1934 7602 3.103447 AGTGATCATGTGCTACCGATG 57.897 47.619 0.00 0.00 0.00 3.84
1935 7603 2.432146 AGTGATCATGTGCTACCGATGT 59.568 45.455 0.00 0.00 0.00 3.06
1936 7604 3.118629 AGTGATCATGTGCTACCGATGTT 60.119 43.478 0.00 0.00 0.00 2.71
1937 7605 4.099419 AGTGATCATGTGCTACCGATGTTA 59.901 41.667 0.00 0.00 0.00 2.41
1938 7606 4.445718 GTGATCATGTGCTACCGATGTTAG 59.554 45.833 0.00 0.00 0.00 2.34
1939 7607 4.099419 TGATCATGTGCTACCGATGTTAGT 59.901 41.667 0.00 0.00 0.00 2.24
1940 7608 4.465632 TCATGTGCTACCGATGTTAGTT 57.534 40.909 0.00 0.00 0.00 2.24
1941 7609 5.585820 TCATGTGCTACCGATGTTAGTTA 57.414 39.130 0.00 0.00 0.00 2.24
1942 7610 5.968254 TCATGTGCTACCGATGTTAGTTAA 58.032 37.500 0.00 0.00 0.00 2.01
1943 7611 6.578944 TCATGTGCTACCGATGTTAGTTAAT 58.421 36.000 0.00 0.00 0.00 1.40
1944 7612 7.045416 TCATGTGCTACCGATGTTAGTTAATT 58.955 34.615 0.00 0.00 0.00 1.40
1945 7613 8.198778 TCATGTGCTACCGATGTTAGTTAATTA 58.801 33.333 0.00 0.00 0.00 1.40
1946 7614 7.760131 TGTGCTACCGATGTTAGTTAATTAC 57.240 36.000 0.00 0.00 0.00 1.89
1947 7615 7.321908 TGTGCTACCGATGTTAGTTAATTACA 58.678 34.615 0.00 0.00 0.00 2.41
1948 7616 7.490079 TGTGCTACCGATGTTAGTTAATTACAG 59.510 37.037 0.00 0.00 0.00 2.74
1949 7617 7.703621 GTGCTACCGATGTTAGTTAATTACAGA 59.296 37.037 0.00 0.00 0.00 3.41
1950 7618 8.252417 TGCTACCGATGTTAGTTAATTACAGAA 58.748 33.333 0.00 0.00 0.00 3.02
1951 7619 9.257651 GCTACCGATGTTAGTTAATTACAGAAT 57.742 33.333 0.00 0.00 0.00 2.40
1982 7650 5.300969 CACAGCATGCATTTACAAGTAGT 57.699 39.130 21.98 0.00 42.53 2.73
1983 7651 6.421377 CACAGCATGCATTTACAAGTAGTA 57.579 37.500 21.98 0.00 42.53 1.82
1984 7652 7.019774 CACAGCATGCATTTACAAGTAGTAT 57.980 36.000 21.98 0.00 42.53 2.12
1985 7653 8.141835 CACAGCATGCATTTACAAGTAGTATA 57.858 34.615 21.98 0.00 42.53 1.47
1986 7654 8.777413 CACAGCATGCATTTACAAGTAGTATAT 58.223 33.333 21.98 0.00 42.53 0.86
1987 7655 8.777413 ACAGCATGCATTTACAAGTAGTATATG 58.223 33.333 21.98 4.91 42.53 1.78
1988 7656 8.777413 CAGCATGCATTTACAAGTAGTATATGT 58.223 33.333 21.98 0.00 41.43 2.29
1989 7657 8.777413 AGCATGCATTTACAAGTAGTATATGTG 58.223 33.333 21.98 0.00 41.43 3.21
1990 7658 8.017373 GCATGCATTTACAAGTAGTATATGTGG 58.983 37.037 14.21 0.00 41.43 4.17
1991 7659 8.506437 CATGCATTTACAAGTAGTATATGTGGG 58.494 37.037 0.00 0.00 41.43 4.61
1992 7660 6.995686 TGCATTTACAAGTAGTATATGTGGGG 59.004 38.462 0.00 0.00 41.43 4.96
1993 7661 6.996282 GCATTTACAAGTAGTATATGTGGGGT 59.004 38.462 0.00 0.00 41.43 4.95
1994 7662 8.152246 GCATTTACAAGTAGTATATGTGGGGTA 58.848 37.037 0.00 0.00 41.43 3.69
1997 7665 9.491406 TTTACAAGTAGTATATGTGGGGTAAGA 57.509 33.333 2.09 0.00 31.53 2.10
1998 7666 7.598759 ACAAGTAGTATATGTGGGGTAAGAG 57.401 40.000 0.00 0.00 0.00 2.85
1999 7667 6.041751 ACAAGTAGTATATGTGGGGTAAGAGC 59.958 42.308 0.00 0.00 0.00 4.09
2000 7668 5.712752 AGTAGTATATGTGGGGTAAGAGCA 58.287 41.667 0.00 0.00 0.00 4.26
2001 7669 6.141083 AGTAGTATATGTGGGGTAAGAGCAA 58.859 40.000 0.00 0.00 0.00 3.91
2002 7670 5.552870 AGTATATGTGGGGTAAGAGCAAG 57.447 43.478 0.00 0.00 0.00 4.01
2003 7671 5.216622 AGTATATGTGGGGTAAGAGCAAGA 58.783 41.667 0.00 0.00 0.00 3.02
2004 7672 5.846714 AGTATATGTGGGGTAAGAGCAAGAT 59.153 40.000 0.00 0.00 0.00 2.40
2005 7673 2.787473 TGTGGGGTAAGAGCAAGATG 57.213 50.000 0.00 0.00 0.00 2.90
2006 7674 1.340017 TGTGGGGTAAGAGCAAGATGC 60.340 52.381 0.00 0.00 45.46 3.91
2016 7684 1.503542 GCAAGATGCGGACAAGTGG 59.496 57.895 0.00 0.00 31.71 4.00
2017 7685 1.237285 GCAAGATGCGGACAAGTGGT 61.237 55.000 0.00 0.00 31.71 4.16
2018 7686 0.798776 CAAGATGCGGACAAGTGGTC 59.201 55.000 0.00 0.00 46.20 4.02
2026 7694 2.755929 GACAAGTGGTCCAGATCGC 58.244 57.895 0.00 0.00 40.83 4.58
2027 7695 0.741221 GACAAGTGGTCCAGATCGCC 60.741 60.000 0.00 0.00 40.83 5.54
2028 7696 1.296392 CAAGTGGTCCAGATCGCCA 59.704 57.895 0.00 0.00 0.00 5.69
2029 7697 0.107508 CAAGTGGTCCAGATCGCCAT 60.108 55.000 0.00 0.00 34.52 4.40
2030 7698 0.107508 AAGTGGTCCAGATCGCCATG 60.108 55.000 0.00 0.00 34.52 3.66
2031 7699 0.977627 AGTGGTCCAGATCGCCATGA 60.978 55.000 0.00 0.00 34.52 3.07
2032 7700 0.107456 GTGGTCCAGATCGCCATGAT 59.893 55.000 0.00 0.00 41.06 2.45
2033 7701 0.107268 TGGTCCAGATCGCCATGATG 59.893 55.000 0.00 0.00 37.47 3.07
2034 7702 0.394192 GGTCCAGATCGCCATGATGA 59.606 55.000 0.00 0.00 37.47 2.92
2035 7703 1.002888 GGTCCAGATCGCCATGATGAT 59.997 52.381 0.00 0.00 37.47 2.45
2036 7704 2.074576 GTCCAGATCGCCATGATGATG 58.925 52.381 0.00 0.00 37.47 3.07
2037 7705 0.803117 CCAGATCGCCATGATGATGC 59.197 55.000 0.00 0.00 37.47 3.91
2038 7706 0.442699 CAGATCGCCATGATGATGCG 59.557 55.000 9.32 9.32 37.47 4.73
2039 7707 0.672711 AGATCGCCATGATGATGCGG 60.673 55.000 14.33 0.00 37.47 5.69
2040 7708 2.249557 GATCGCCATGATGATGCGGC 62.250 60.000 14.33 0.00 37.47 6.53
2042 7710 4.695231 GCCATGATGATGCGGCGC 62.695 66.667 27.44 27.44 34.26 6.53
2043 7711 4.034258 CCATGATGATGCGGCGCC 62.034 66.667 30.82 19.07 0.00 6.53
2044 7712 3.281395 CATGATGATGCGGCGCCA 61.281 61.111 30.82 21.40 0.00 5.69
2045 7713 3.282157 ATGATGATGCGGCGCCAC 61.282 61.111 30.82 19.07 0.00 5.01
2046 7714 4.774503 TGATGATGCGGCGCCACA 62.775 61.111 30.82 25.14 0.00 4.17
2047 7715 4.241999 GATGATGCGGCGCCACAC 62.242 66.667 30.82 17.42 0.00 3.82
2060 7728 4.248842 CACACACGGGCCTGACCA 62.249 66.667 21.41 0.00 42.05 4.02
2061 7729 3.941188 ACACACGGGCCTGACCAG 61.941 66.667 21.41 7.55 42.05 4.00
2064 7732 4.335647 CACGGGCCTGACCAGCTT 62.336 66.667 21.41 0.00 42.05 3.74
2065 7733 4.335647 ACGGGCCTGACCAGCTTG 62.336 66.667 21.41 0.00 42.05 4.01
2101 7769 7.690952 TTTGGGTTACATATGTTTGGTAGTC 57.309 36.000 14.77 0.00 0.00 2.59
2115 7783 9.614792 ATGTTTGGTAGTCTAGGATTTGTAATC 57.385 33.333 0.00 0.00 0.00 1.75
2119 7787 6.381994 TGGTAGTCTAGGATTTGTAATCCGTT 59.618 38.462 11.65 0.42 42.87 4.44
2121 7789 7.767659 GGTAGTCTAGGATTTGTAATCCGTTTT 59.232 37.037 11.65 0.00 42.87 2.43
2134 7802 8.070034 TGTAATCCGTTTTCTACCTTATCTCA 57.930 34.615 0.00 0.00 0.00 3.27
2136 7804 9.032420 GTAATCCGTTTTCTACCTTATCTCAAG 57.968 37.037 0.00 0.00 0.00 3.02
2162 7830 0.821711 CGTCTTGCCCTCCAAACCAA 60.822 55.000 0.00 0.00 31.94 3.67
2186 7854 8.755941 CAAGTATTCAATATATATTCGGCCTCG 58.244 37.037 4.93 0.00 37.82 4.63
2189 7857 5.515797 TCAATATATATTCGGCCTCGAGG 57.484 43.478 27.83 27.83 46.75 4.63
2204 7872 4.499183 CCTCGAGGCTCAATAATACATCC 58.501 47.826 20.67 0.00 0.00 3.51
2215 7883 8.554528 GCTCAATAATACATCCATCATATTCCG 58.445 37.037 0.00 0.00 0.00 4.30
2227 7895 6.204688 TCCATCATATTCCGCAACAACTATTC 59.795 38.462 0.00 0.00 0.00 1.75
2244 7912 3.941704 ATTCCACCAAATCCCTCTCTC 57.058 47.619 0.00 0.00 0.00 3.20
2259 7927 3.386402 CCTCTCTCCCTTCTAACATGGTC 59.614 52.174 0.00 0.00 0.00 4.02
2260 7928 3.024547 TCTCTCCCTTCTAACATGGTCG 58.975 50.000 0.00 0.00 0.00 4.79
2261 7929 2.761208 CTCTCCCTTCTAACATGGTCGT 59.239 50.000 0.00 0.00 0.00 4.34
2262 7930 2.496070 TCTCCCTTCTAACATGGTCGTG 59.504 50.000 0.00 0.00 0.00 4.35
2263 7931 1.553248 TCCCTTCTAACATGGTCGTGG 59.447 52.381 0.00 0.00 0.00 4.94
2265 7933 2.498481 CCCTTCTAACATGGTCGTGGTA 59.502 50.000 0.00 0.00 0.00 3.25
2281 8222 4.458666 TAGAGCGCCTCTACTCCG 57.541 61.111 2.29 0.00 41.50 4.63
2284 8225 2.829458 AGCGCCTCTACTCCGACC 60.829 66.667 2.29 0.00 0.00 4.79
2318 8259 3.844090 GCCTCTCCTCCGACCAGC 61.844 72.222 0.00 0.00 0.00 4.85
2394 8465 4.082523 ACCGGGACACCTGCATCG 62.083 66.667 6.32 0.00 33.28 3.84
2442 8513 3.642755 GGCCAATCATAGCCGTCG 58.357 61.111 0.00 0.00 39.87 5.12
2443 8514 2.607892 GGCCAATCATAGCCGTCGC 61.608 63.158 0.00 0.00 39.87 5.19
2446 8517 1.278172 CCAATCATAGCCGTCGCTCG 61.278 60.000 0.00 0.00 43.95 5.03
2447 8518 1.661821 AATCATAGCCGTCGCTCGC 60.662 57.895 0.00 0.00 43.95 5.03
2448 8519 3.881092 ATCATAGCCGTCGCTCGCG 62.881 63.158 0.00 0.00 43.95 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.391227 AGACCAAGTTTATGGACAAAACTG 57.609 37.500 0.00 0.00 44.35 3.16
1 2 7.778382 ACTTAGACCAAGTTTATGGACAAAACT 59.222 33.333 0.00 0.00 45.54 2.66
20 21 7.474398 AAAGTCAAACCTAACGAACTTAGAC 57.526 36.000 0.00 0.00 34.69 2.59
23 24 7.846644 TGAAAAGTCAAACCTAACGAACTTA 57.153 32.000 0.00 0.00 0.00 2.24
63 64 1.207089 TCCCTCCGTTCTGCAATGTAG 59.793 52.381 0.00 0.00 0.00 2.74
70 71 0.889186 TTTTGCTCCCTCCGTTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
71 72 1.604604 TTTTTGCTCCCTCCGTTCTG 58.395 50.000 0.00 0.00 0.00 3.02
168 172 7.286087 ACATGCCTTGCAAATATTCTCTTCATA 59.714 33.333 0.00 0.00 43.62 2.15
170 174 5.419788 ACATGCCTTGCAAATATTCTCTTCA 59.580 36.000 0.00 0.00 43.62 3.02
171 175 5.747197 CACATGCCTTGCAAATATTCTCTTC 59.253 40.000 0.00 0.00 43.62 2.87
182 188 2.892215 TCATTTCTCACATGCCTTGCAA 59.108 40.909 0.00 0.00 43.62 4.08
198 204 7.484993 TTCAATCATGGAGGACATTTCATTT 57.515 32.000 0.00 0.00 37.84 2.32
211 217 4.539596 TCCCATCCAATTCAATCATGGA 57.460 40.909 5.01 0.00 46.60 3.41
212 218 6.573680 GCTTATCCCATCCAATTCAATCATGG 60.574 42.308 0.00 0.00 34.80 3.66
213 219 6.014925 TGCTTATCCCATCCAATTCAATCATG 60.015 38.462 0.00 0.00 0.00 3.07
214 220 6.079336 TGCTTATCCCATCCAATTCAATCAT 58.921 36.000 0.00 0.00 0.00 2.45
215 221 5.456779 TGCTTATCCCATCCAATTCAATCA 58.543 37.500 0.00 0.00 0.00 2.57
216 222 5.771666 TCTGCTTATCCCATCCAATTCAATC 59.228 40.000 0.00 0.00 0.00 2.67
217 223 5.537674 GTCTGCTTATCCCATCCAATTCAAT 59.462 40.000 0.00 0.00 0.00 2.57
218 224 4.889409 GTCTGCTTATCCCATCCAATTCAA 59.111 41.667 0.00 0.00 0.00 2.69
219 225 4.079844 TGTCTGCTTATCCCATCCAATTCA 60.080 41.667 0.00 0.00 0.00 2.57
220 226 4.464008 TGTCTGCTTATCCCATCCAATTC 58.536 43.478 0.00 0.00 0.00 2.17
221 227 4.524802 TGTCTGCTTATCCCATCCAATT 57.475 40.909 0.00 0.00 0.00 2.32
222 228 4.079558 ACTTGTCTGCTTATCCCATCCAAT 60.080 41.667 0.00 0.00 0.00 3.16
223 229 3.266772 ACTTGTCTGCTTATCCCATCCAA 59.733 43.478 0.00 0.00 0.00 3.53
277 322 3.074412 ACAATTCAATCACGGAGGACAC 58.926 45.455 0.00 0.00 0.00 3.67
302 347 2.111384 CTCTCTTTCCATCGGAGGGAA 58.889 52.381 19.37 19.37 42.49 3.97
338 383 7.065683 TGCTGATAAGATATGTTGCTCGAAAAA 59.934 33.333 0.00 0.00 0.00 1.94
388 433 5.466728 GTCAAAACAGCTGAATCTAGTGTGA 59.533 40.000 23.35 7.28 0.00 3.58
406 451 5.837437 ACACGAATAAGCAAATGGTCAAAA 58.163 33.333 0.00 0.00 0.00 2.44
408 453 4.083003 GGACACGAATAAGCAAATGGTCAA 60.083 41.667 0.00 0.00 0.00 3.18
419 464 0.463833 GGCCAGGGGACACGAATAAG 60.464 60.000 0.00 0.00 0.00 1.73
454 499 1.203052 CAAGTCCACATTGCCATCACC 59.797 52.381 0.00 0.00 0.00 4.02
455 500 1.403249 GCAAGTCCACATTGCCATCAC 60.403 52.381 0.00 0.00 45.79 3.06
475 521 2.023307 TGTAAGACTAAGGGAGGGAGGG 60.023 54.545 0.00 0.00 0.00 4.30
484 807 6.043411 GCTCATGTTAGGTGTAAGACTAAGG 58.957 44.000 0.00 0.00 30.45 2.69
494 820 0.249398 GGACGGCTCATGTTAGGTGT 59.751 55.000 0.00 0.00 0.00 4.16
495 821 0.249120 TGGACGGCTCATGTTAGGTG 59.751 55.000 0.00 0.00 0.00 4.00
605 1254 6.608808 AGACATTTATTTTGGGATGAAGGGAG 59.391 38.462 0.00 0.00 0.00 4.30
606 1255 6.502138 AGACATTTATTTTGGGATGAAGGGA 58.498 36.000 0.00 0.00 0.00 4.20
607 1256 6.380846 TGAGACATTTATTTTGGGATGAAGGG 59.619 38.462 0.00 0.00 0.00 3.95
608 1257 7.408756 TGAGACATTTATTTTGGGATGAAGG 57.591 36.000 0.00 0.00 0.00 3.46
609 1258 7.490402 GCTTGAGACATTTATTTTGGGATGAAG 59.510 37.037 0.00 0.00 0.00 3.02
610 1259 7.178983 AGCTTGAGACATTTATTTTGGGATGAA 59.821 33.333 0.00 0.00 0.00 2.57
611 1260 6.664816 AGCTTGAGACATTTATTTTGGGATGA 59.335 34.615 0.00 0.00 0.00 2.92
612 1261 6.870769 AGCTTGAGACATTTATTTTGGGATG 58.129 36.000 0.00 0.00 0.00 3.51
613 1262 7.486407 AAGCTTGAGACATTTATTTTGGGAT 57.514 32.000 0.00 0.00 0.00 3.85
614 1263 6.916360 AAGCTTGAGACATTTATTTTGGGA 57.084 33.333 0.00 0.00 0.00 4.37
615 1264 7.830739 ACTAAGCTTGAGACATTTATTTTGGG 58.169 34.615 9.86 0.00 0.00 4.12
644 1293 6.103330 TCTTCTTTTGCACCCTTTACAAAAC 58.897 36.000 0.00 0.00 38.11 2.43
652 1301 5.048713 CGTAAGAATCTTCTTTTGCACCCTT 60.049 40.000 10.24 0.00 44.70 3.95
737 1812 5.180117 TCGACGCAGGAACTAGTTATATACC 59.820 44.000 8.42 5.12 36.02 2.73
748 1823 0.959553 TCTTCTTCGACGCAGGAACT 59.040 50.000 0.00 0.00 43.88 3.01
750 1825 3.428999 CCTTATCTTCTTCGACGCAGGAA 60.429 47.826 0.00 0.00 0.00 3.36
775 1851 3.332034 TCTCATTCGTCTCTGTCGTGTA 58.668 45.455 0.00 0.00 0.00 2.90
780 1856 4.742659 GCCTAATTCTCATTCGTCTCTGTC 59.257 45.833 0.00 0.00 0.00 3.51
783 1860 3.632604 TCGCCTAATTCTCATTCGTCTCT 59.367 43.478 0.00 0.00 0.00 3.10
825 1902 2.111043 CGGGTAGCCGCATCCATT 59.889 61.111 21.93 0.00 0.00 3.16
950 2049 3.365472 AGAAAACAGGGAAGCTTGTTGT 58.635 40.909 2.10 0.00 37.57 3.32
967 2073 5.874093 AGGATTTGAGCAGAGAAGAAGAAA 58.126 37.500 0.00 0.00 0.00 2.52
1003 2121 1.449070 CGCTGCTTCTCATGGAGCA 60.449 57.895 15.28 15.28 46.85 4.26
1128 6692 4.980805 GCGACGTGCCCCTTGTCA 62.981 66.667 0.00 0.00 37.76 3.58
1164 6728 1.685517 GGGGTGACGGAGAGGTAATAC 59.314 57.143 0.00 0.00 0.00 1.89
1167 6731 0.324091 GAGGGGTGACGGAGAGGTAA 60.324 60.000 0.00 0.00 0.00 2.85
1308 6872 1.133790 CACTTAGTACTTACGGCGGCT 59.866 52.381 13.24 1.82 0.00 5.52
1479 7137 2.439156 GATCAGTGGTGGCTGGCC 60.439 66.667 4.43 4.43 37.12 5.36
1500 7158 8.196103 GGAGTACTTATTCTAGACACGGAATTT 58.804 37.037 0.00 0.00 34.52 1.82
1509 7167 5.375773 ACGGAGGGAGTACTTATTCTAGAC 58.624 45.833 0.00 0.00 0.00 2.59
1526 7187 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1573 7234 4.150451 CGTCCCGTAATGTAAGACGTTTTT 59.850 41.667 0.00 0.00 43.89 1.94
1577 7238 1.133025 CCGTCCCGTAATGTAAGACGT 59.867 52.381 9.63 0.00 46.62 4.34
1579 7240 2.223665 CCTCCGTCCCGTAATGTAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
1585 7246 1.041447 ACTCCCTCCGTCCCGTAATG 61.041 60.000 0.00 0.00 0.00 1.90
1590 7251 0.817229 GTAGTACTCCCTCCGTCCCG 60.817 65.000 0.00 0.00 0.00 5.14
1591 7252 0.817229 CGTAGTACTCCCTCCGTCCC 60.817 65.000 0.00 0.00 0.00 4.46
1592 7253 0.179000 TCGTAGTACTCCCTCCGTCC 59.821 60.000 0.00 0.00 0.00 4.79
1593 7254 1.872313 CATCGTAGTACTCCCTCCGTC 59.128 57.143 0.00 0.00 0.00 4.79
1673 7341 8.721478 GCCTTCTTTTTCCTTGGAAATTAATTC 58.279 33.333 14.66 0.00 37.31 2.17
1686 7354 6.485171 ACATACATAGTGCCTTCTTTTTCCT 58.515 36.000 0.00 0.00 0.00 3.36
1716 7384 4.334759 CCAAGAACTCAGGATGCATAAGTG 59.665 45.833 0.00 0.00 34.76 3.16
1717 7385 4.521146 CCAAGAACTCAGGATGCATAAGT 58.479 43.478 0.00 0.00 34.76 2.24
1718 7386 3.314635 GCCAAGAACTCAGGATGCATAAG 59.685 47.826 0.00 0.00 34.76 1.73
1719 7387 3.282021 GCCAAGAACTCAGGATGCATAA 58.718 45.455 0.00 0.00 34.76 1.90
1720 7388 2.239402 TGCCAAGAACTCAGGATGCATA 59.761 45.455 0.00 0.00 34.76 3.14
1721 7389 1.005097 TGCCAAGAACTCAGGATGCAT 59.995 47.619 0.00 0.00 34.76 3.96
1735 7403 3.003394 TGGAACATAGTCCATGCCAAG 57.997 47.619 0.00 0.00 42.97 3.61
1748 7416 5.179452 AGTAGCACTATTGGTTGGAACAT 57.821 39.130 0.00 0.00 39.30 2.71
1761 7429 7.825331 AATCAGTATTCAGCTAGTAGCACTA 57.175 36.000 23.77 8.54 45.56 2.74
1787 7455 7.953005 TTGCAAGATACATTCATAAAAGGGA 57.047 32.000 0.00 0.00 0.00 4.20
1799 7467 7.041848 GCTTTGGTTTCTTTTTGCAAGATACAT 60.042 33.333 0.00 0.00 32.30 2.29
1804 7472 4.573900 TGCTTTGGTTTCTTTTTGCAAGA 58.426 34.783 0.00 0.00 0.00 3.02
1816 7484 9.171877 TGAAGAATAAAACATTTGCTTTGGTTT 57.828 25.926 3.34 3.34 37.69 3.27
1821 7489 8.424133 AGACCTGAAGAATAAAACATTTGCTTT 58.576 29.630 0.00 0.00 0.00 3.51
1825 7493 7.885297 TCCAGACCTGAAGAATAAAACATTTG 58.115 34.615 0.00 0.00 0.00 2.32
1832 7500 7.723616 TGACATTTTCCAGACCTGAAGAATAAA 59.276 33.333 0.00 0.00 0.00 1.40
1847 7515 5.049167 ACGTTACGTAGTTGACATTTTCCA 58.951 37.500 9.22 0.00 37.78 3.53
1848 7516 5.388786 GGACGTTACGTAGTTGACATTTTCC 60.389 44.000 11.32 0.00 37.78 3.13
1849 7517 5.403466 AGGACGTTACGTAGTTGACATTTTC 59.597 40.000 11.32 0.00 37.78 2.29
1850 7518 5.291971 AGGACGTTACGTAGTTGACATTTT 58.708 37.500 11.32 0.00 37.78 1.82
1851 7519 4.874970 AGGACGTTACGTAGTTGACATTT 58.125 39.130 11.32 0.00 37.78 2.32
1852 7520 4.510038 AGGACGTTACGTAGTTGACATT 57.490 40.909 11.32 0.00 37.78 2.71
1853 7521 5.627499 TTAGGACGTTACGTAGTTGACAT 57.373 39.130 11.32 0.00 37.78 3.06
1854 7522 5.431420 TTTAGGACGTTACGTAGTTGACA 57.569 39.130 11.32 0.00 37.78 3.58
1855 7523 8.620533 ATTATTTAGGACGTTACGTAGTTGAC 57.379 34.615 11.32 0.00 37.78 3.18
1856 7524 9.638239 AAATTATTTAGGACGTTACGTAGTTGA 57.362 29.630 11.32 0.00 37.78 3.18
1861 7529 9.015577 CCGTAAAATTATTTAGGACGTTACGTA 57.984 33.333 11.32 0.00 40.35 3.57
1862 7530 7.010091 CCCGTAAAATTATTTAGGACGTTACGT 59.990 37.037 11.12 11.12 40.35 3.57
1863 7531 7.010091 ACCCGTAAAATTATTTAGGACGTTACG 59.990 37.037 2.19 2.19 41.16 3.18
1864 7532 8.196802 ACCCGTAAAATTATTTAGGACGTTAC 57.803 34.615 14.22 2.79 38.54 2.50
1865 7533 8.785329 AACCCGTAAAATTATTTAGGACGTTA 57.215 30.769 14.22 0.00 38.54 3.18
1866 7534 7.686438 AACCCGTAAAATTATTTAGGACGTT 57.314 32.000 14.22 7.01 38.54 3.99
1867 7535 8.785329 TTAACCCGTAAAATTATTTAGGACGT 57.215 30.769 14.22 0.00 38.54 4.34
1878 7546 9.344772 TCATATGCACTATTAACCCGTAAAATT 57.655 29.630 0.00 0.00 0.00 1.82
1879 7547 8.911918 TCATATGCACTATTAACCCGTAAAAT 57.088 30.769 0.00 0.00 0.00 1.82
1880 7548 8.734218 TTCATATGCACTATTAACCCGTAAAA 57.266 30.769 0.00 0.00 0.00 1.52
1881 7549 7.988599 ACTTCATATGCACTATTAACCCGTAAA 59.011 33.333 0.00 0.00 0.00 2.01
1882 7550 7.502696 ACTTCATATGCACTATTAACCCGTAA 58.497 34.615 0.00 0.00 0.00 3.18
1883 7551 7.058023 ACTTCATATGCACTATTAACCCGTA 57.942 36.000 0.00 0.00 0.00 4.02
1884 7552 5.925509 ACTTCATATGCACTATTAACCCGT 58.074 37.500 0.00 0.00 0.00 5.28
1885 7553 6.481976 TCAACTTCATATGCACTATTAACCCG 59.518 38.462 0.00 0.00 0.00 5.28
1886 7554 7.282224 TGTCAACTTCATATGCACTATTAACCC 59.718 37.037 0.00 0.00 0.00 4.11
1887 7555 8.208718 TGTCAACTTCATATGCACTATTAACC 57.791 34.615 0.00 0.00 0.00 2.85
1890 7558 9.448438 ACTTTGTCAACTTCATATGCACTATTA 57.552 29.630 0.00 0.00 0.00 0.98
1891 7559 8.239314 CACTTTGTCAACTTCATATGCACTATT 58.761 33.333 0.00 0.00 0.00 1.73
1892 7560 7.607607 TCACTTTGTCAACTTCATATGCACTAT 59.392 33.333 0.00 0.00 0.00 2.12
1893 7561 6.934083 TCACTTTGTCAACTTCATATGCACTA 59.066 34.615 0.00 0.00 0.00 2.74
1894 7562 5.764686 TCACTTTGTCAACTTCATATGCACT 59.235 36.000 0.00 0.00 0.00 4.40
1895 7563 6.000891 TCACTTTGTCAACTTCATATGCAC 57.999 37.500 0.00 0.00 0.00 4.57
1896 7564 6.430616 TGATCACTTTGTCAACTTCATATGCA 59.569 34.615 0.00 0.00 0.00 3.96
1897 7565 6.845302 TGATCACTTTGTCAACTTCATATGC 58.155 36.000 0.00 0.00 0.00 3.14
1898 7566 8.456471 ACATGATCACTTTGTCAACTTCATATG 58.544 33.333 0.00 0.00 0.00 1.78
1899 7567 8.456471 CACATGATCACTTTGTCAACTTCATAT 58.544 33.333 0.00 0.00 0.00 1.78
1900 7568 7.573656 GCACATGATCACTTTGTCAACTTCATA 60.574 37.037 0.00 0.00 0.00 2.15
1901 7569 6.675026 CACATGATCACTTTGTCAACTTCAT 58.325 36.000 0.00 0.00 0.00 2.57
1902 7570 5.506151 GCACATGATCACTTTGTCAACTTCA 60.506 40.000 0.00 0.00 0.00 3.02
1903 7571 4.913924 GCACATGATCACTTTGTCAACTTC 59.086 41.667 0.00 0.00 0.00 3.01
1904 7572 4.581824 AGCACATGATCACTTTGTCAACTT 59.418 37.500 0.00 0.00 0.00 2.66
1905 7573 4.139786 AGCACATGATCACTTTGTCAACT 58.860 39.130 0.00 0.00 0.00 3.16
1906 7574 4.494350 AGCACATGATCACTTTGTCAAC 57.506 40.909 0.00 0.00 0.00 3.18
1907 7575 4.455533 GGTAGCACATGATCACTTTGTCAA 59.544 41.667 0.00 0.00 0.00 3.18
1908 7576 4.002982 GGTAGCACATGATCACTTTGTCA 58.997 43.478 0.00 0.00 0.00 3.58
1909 7577 3.062639 CGGTAGCACATGATCACTTTGTC 59.937 47.826 0.00 0.00 0.00 3.18
1910 7578 3.002791 CGGTAGCACATGATCACTTTGT 58.997 45.455 0.00 0.00 0.00 2.83
1911 7579 3.261580 TCGGTAGCACATGATCACTTTG 58.738 45.455 0.00 0.00 0.00 2.77
1912 7580 3.610040 TCGGTAGCACATGATCACTTT 57.390 42.857 0.00 0.00 0.00 2.66
1913 7581 3.118629 ACATCGGTAGCACATGATCACTT 60.119 43.478 0.00 0.00 0.00 3.16
1914 7582 2.432146 ACATCGGTAGCACATGATCACT 59.568 45.455 0.00 0.00 0.00 3.41
1915 7583 2.826428 ACATCGGTAGCACATGATCAC 58.174 47.619 0.00 0.00 0.00 3.06
1916 7584 3.541996 AACATCGGTAGCACATGATCA 57.458 42.857 0.00 0.00 0.00 2.92
1917 7585 4.621991 ACTAACATCGGTAGCACATGATC 58.378 43.478 0.00 0.00 0.00 2.92
1918 7586 4.672587 ACTAACATCGGTAGCACATGAT 57.327 40.909 0.00 0.00 0.00 2.45
1919 7587 4.465632 AACTAACATCGGTAGCACATGA 57.534 40.909 0.00 0.00 0.00 3.07
1920 7588 6.844696 ATTAACTAACATCGGTAGCACATG 57.155 37.500 0.00 0.00 0.00 3.21
1921 7589 7.982919 TGTAATTAACTAACATCGGTAGCACAT 59.017 33.333 0.00 0.00 0.00 3.21
1922 7590 7.321908 TGTAATTAACTAACATCGGTAGCACA 58.678 34.615 0.00 0.00 0.00 4.57
1923 7591 7.703621 TCTGTAATTAACTAACATCGGTAGCAC 59.296 37.037 0.00 0.00 0.00 4.40
1924 7592 7.774134 TCTGTAATTAACTAACATCGGTAGCA 58.226 34.615 0.00 0.00 0.00 3.49
1925 7593 8.638685 TTCTGTAATTAACTAACATCGGTAGC 57.361 34.615 0.00 0.00 0.00 3.58
1928 7596 8.879759 CACATTCTGTAATTAACTAACATCGGT 58.120 33.333 0.00 0.00 0.00 4.69
1929 7597 8.879759 ACACATTCTGTAATTAACTAACATCGG 58.120 33.333 0.00 0.00 0.00 4.18
1934 7602 9.931210 GCCATACACATTCTGTAATTAACTAAC 57.069 33.333 0.00 0.00 38.90 2.34
1935 7603 9.674068 TGCCATACACATTCTGTAATTAACTAA 57.326 29.630 0.00 0.00 38.90 2.24
1958 7626 9.279108 ATACTACTTGTAAATGCATGCTGTGCC 62.279 40.741 20.33 4.83 42.90 5.01
1959 7627 6.458751 ATACTACTTGTAAATGCATGCTGTGC 60.459 38.462 20.33 8.01 43.40 4.57
1960 7628 5.300969 ACTACTTGTAAATGCATGCTGTG 57.699 39.130 20.33 3.21 0.00 3.66
1961 7629 8.777413 CATATACTACTTGTAAATGCATGCTGT 58.223 33.333 20.33 4.66 34.45 4.40
1962 7630 8.777413 ACATATACTACTTGTAAATGCATGCTG 58.223 33.333 20.33 4.32 34.45 4.41
1963 7631 8.777413 CACATATACTACTTGTAAATGCATGCT 58.223 33.333 20.33 0.40 34.45 3.79
1964 7632 8.017373 CCACATATACTACTTGTAAATGCATGC 58.983 37.037 11.82 11.82 34.45 4.06
1965 7633 8.506437 CCCACATATACTACTTGTAAATGCATG 58.494 37.037 0.00 0.00 34.45 4.06
1966 7634 7.665559 CCCCACATATACTACTTGTAAATGCAT 59.334 37.037 0.00 0.00 34.45 3.96
1967 7635 6.995686 CCCCACATATACTACTTGTAAATGCA 59.004 38.462 0.00 0.00 34.45 3.96
1968 7636 6.996282 ACCCCACATATACTACTTGTAAATGC 59.004 38.462 0.00 0.00 34.45 3.56
1971 7639 9.491406 TCTTACCCCACATATACTACTTGTAAA 57.509 33.333 0.00 0.00 34.45 2.01
1972 7640 9.139734 CTCTTACCCCACATATACTACTTGTAA 57.860 37.037 0.00 0.00 34.45 2.41
1973 7641 7.232127 GCTCTTACCCCACATATACTACTTGTA 59.768 40.741 0.00 0.00 35.37 2.41
1974 7642 6.041751 GCTCTTACCCCACATATACTACTTGT 59.958 42.308 0.00 0.00 0.00 3.16
1975 7643 6.041637 TGCTCTTACCCCACATATACTACTTG 59.958 42.308 0.00 0.00 0.00 3.16
1976 7644 6.141083 TGCTCTTACCCCACATATACTACTT 58.859 40.000 0.00 0.00 0.00 2.24
1977 7645 5.712752 TGCTCTTACCCCACATATACTACT 58.287 41.667 0.00 0.00 0.00 2.57
1978 7646 6.267014 TCTTGCTCTTACCCCACATATACTAC 59.733 42.308 0.00 0.00 0.00 2.73
1979 7647 6.378745 TCTTGCTCTTACCCCACATATACTA 58.621 40.000 0.00 0.00 0.00 1.82
1980 7648 5.216622 TCTTGCTCTTACCCCACATATACT 58.783 41.667 0.00 0.00 0.00 2.12
1981 7649 5.546621 TCTTGCTCTTACCCCACATATAC 57.453 43.478 0.00 0.00 0.00 1.47
1982 7650 5.513094 GCATCTTGCTCTTACCCCACATATA 60.513 44.000 0.00 0.00 40.96 0.86
1983 7651 4.747931 GCATCTTGCTCTTACCCCACATAT 60.748 45.833 0.00 0.00 40.96 1.78
1984 7652 3.433598 GCATCTTGCTCTTACCCCACATA 60.434 47.826 0.00 0.00 40.96 2.29
1985 7653 2.684927 GCATCTTGCTCTTACCCCACAT 60.685 50.000 0.00 0.00 40.96 3.21
1986 7654 1.340017 GCATCTTGCTCTTACCCCACA 60.340 52.381 0.00 0.00 40.96 4.17
1987 7655 1.383523 GCATCTTGCTCTTACCCCAC 58.616 55.000 0.00 0.00 40.96 4.61
1988 7656 0.107703 CGCATCTTGCTCTTACCCCA 60.108 55.000 0.00 0.00 42.25 4.96
1989 7657 0.815615 CCGCATCTTGCTCTTACCCC 60.816 60.000 0.00 0.00 42.25 4.95
1990 7658 0.178068 TCCGCATCTTGCTCTTACCC 59.822 55.000 0.00 0.00 42.25 3.69
1991 7659 1.291132 GTCCGCATCTTGCTCTTACC 58.709 55.000 0.00 0.00 42.25 2.85
1992 7660 2.010145 TGTCCGCATCTTGCTCTTAC 57.990 50.000 0.00 0.00 42.25 2.34
1993 7661 2.028112 ACTTGTCCGCATCTTGCTCTTA 60.028 45.455 0.00 0.00 42.25 2.10
1994 7662 1.271054 ACTTGTCCGCATCTTGCTCTT 60.271 47.619 0.00 0.00 42.25 2.85
1995 7663 0.322975 ACTTGTCCGCATCTTGCTCT 59.677 50.000 0.00 0.00 42.25 4.09
1996 7664 0.445436 CACTTGTCCGCATCTTGCTC 59.555 55.000 0.00 0.00 42.25 4.26
1997 7665 0.957395 CCACTTGTCCGCATCTTGCT 60.957 55.000 0.00 0.00 42.25 3.91
1998 7666 1.237285 ACCACTTGTCCGCATCTTGC 61.237 55.000 0.00 0.00 40.69 4.01
1999 7667 0.798776 GACCACTTGTCCGCATCTTG 59.201 55.000 0.00 0.00 38.09 3.02
2000 7668 3.233355 GACCACTTGTCCGCATCTT 57.767 52.632 0.00 0.00 38.09 2.40
2008 7676 0.741221 GGCGATCTGGACCACTTGTC 60.741 60.000 0.00 0.00 43.67 3.18
2009 7677 1.296715 GGCGATCTGGACCACTTGT 59.703 57.895 0.00 0.00 0.00 3.16
2010 7678 0.107508 ATGGCGATCTGGACCACTTG 60.108 55.000 0.00 0.00 35.99 3.16
2011 7679 0.107508 CATGGCGATCTGGACCACTT 60.108 55.000 0.00 0.00 35.99 3.16
2012 7680 0.977627 TCATGGCGATCTGGACCACT 60.978 55.000 0.00 0.00 35.99 4.00
2013 7681 0.107456 ATCATGGCGATCTGGACCAC 59.893 55.000 0.00 0.00 35.99 4.16
2014 7682 0.107268 CATCATGGCGATCTGGACCA 59.893 55.000 0.00 0.00 37.99 4.02
2015 7683 0.394192 TCATCATGGCGATCTGGACC 59.606 55.000 0.00 0.00 29.21 4.46
2016 7684 2.074576 CATCATCATGGCGATCTGGAC 58.925 52.381 0.00 0.00 29.21 4.02
2017 7685 1.609841 GCATCATCATGGCGATCTGGA 60.610 52.381 0.00 0.00 29.21 3.86
2018 7686 0.803117 GCATCATCATGGCGATCTGG 59.197 55.000 0.00 0.00 29.21 3.86
2025 7693 4.695231 GCGCCGCATCATCATGGC 62.695 66.667 3.15 0.00 44.09 4.40
2026 7694 4.034258 GGCGCCGCATCATCATGG 62.034 66.667 12.58 0.00 0.00 3.66
2027 7695 3.281395 TGGCGCCGCATCATCATG 61.281 61.111 23.90 0.00 0.00 3.07
2028 7696 3.282157 GTGGCGCCGCATCATCAT 61.282 61.111 34.26 0.00 0.00 2.45
2029 7697 4.774503 TGTGGCGCCGCATCATCA 62.775 61.111 37.64 15.38 0.00 3.07
2030 7698 4.241999 GTGTGGCGCCGCATCATC 62.242 66.667 42.05 26.89 38.77 2.92
2043 7711 4.248842 TGGTCAGGCCCGTGTGTG 62.249 66.667 0.00 0.00 36.04 3.82
2044 7712 3.941188 CTGGTCAGGCCCGTGTGT 61.941 66.667 0.00 0.00 36.04 3.72
2047 7715 4.335647 AAGCTGGTCAGGCCCGTG 62.336 66.667 0.00 0.00 36.04 4.94
2048 7716 4.335647 CAAGCTGGTCAGGCCCGT 62.336 66.667 0.00 0.00 36.04 5.28
2049 7717 2.463589 TAACAAGCTGGTCAGGCCCG 62.464 60.000 0.00 0.00 36.04 6.13
2050 7718 0.678048 CTAACAAGCTGGTCAGGCCC 60.678 60.000 0.00 0.00 36.04 5.80
2051 7719 0.324943 TCTAACAAGCTGGTCAGGCC 59.675 55.000 0.00 0.00 37.90 5.19
2052 7720 1.276421 TCTCTAACAAGCTGGTCAGGC 59.724 52.381 0.00 0.00 0.00 4.85
2053 7721 3.902881 ATCTCTAACAAGCTGGTCAGG 57.097 47.619 0.00 0.00 0.00 3.86
2054 7722 8.986847 CAAATATATCTCTAACAAGCTGGTCAG 58.013 37.037 0.00 0.00 0.00 3.51
2055 7723 7.933577 CCAAATATATCTCTAACAAGCTGGTCA 59.066 37.037 0.00 0.00 0.00 4.02
2056 7724 7.389053 CCCAAATATATCTCTAACAAGCTGGTC 59.611 40.741 0.00 0.00 0.00 4.02
2057 7725 7.147302 ACCCAAATATATCTCTAACAAGCTGGT 60.147 37.037 0.00 0.00 0.00 4.00
2058 7726 7.227156 ACCCAAATATATCTCTAACAAGCTGG 58.773 38.462 0.00 0.00 0.00 4.85
2059 7727 8.682936 AACCCAAATATATCTCTAACAAGCTG 57.317 34.615 0.00 0.00 0.00 4.24
2060 7728 9.780186 GTAACCCAAATATATCTCTAACAAGCT 57.220 33.333 0.00 0.00 0.00 3.74
2061 7729 9.555727 TGTAACCCAAATATATCTCTAACAAGC 57.444 33.333 0.00 0.00 0.00 4.01
2101 7769 7.985752 AGGTAGAAAACGGATTACAAATCCTAG 59.014 37.037 14.93 4.99 36.07 3.02
2115 7783 5.974108 TCCTTGAGATAAGGTAGAAAACGG 58.026 41.667 5.67 0.00 38.55 4.44
2119 7787 5.364157 GCCTCTCCTTGAGATAAGGTAGAAA 59.636 44.000 5.67 0.00 45.39 2.52
2121 7789 4.475345 GCCTCTCCTTGAGATAAGGTAGA 58.525 47.826 5.67 6.63 45.39 2.59
2158 7826 8.548877 AGGCCGAATATATATTGAATACTTGGT 58.451 33.333 12.74 0.00 0.00 3.67
2162 7830 8.234136 TCGAGGCCGAATATATATTGAATACT 57.766 34.615 12.74 4.72 42.51 2.12
2186 7854 9.624373 AATATGATGGATGTATTATTGAGCCTC 57.376 33.333 0.00 0.00 0.00 4.70
2189 7857 8.554528 CGGAATATGATGGATGTATTATTGAGC 58.445 37.037 0.00 0.00 0.00 4.26
2204 7872 6.017192 TGGAATAGTTGTTGCGGAATATGATG 60.017 38.462 0.00 0.00 0.00 3.07
2215 7883 4.494484 GGATTTGGTGGAATAGTTGTTGC 58.506 43.478 0.00 0.00 0.00 4.17
2227 7895 0.548510 GGGAGAGAGGGATTTGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
2244 7912 1.278127 ACCACGACCATGTTAGAAGGG 59.722 52.381 0.00 0.00 0.00 3.95
2259 7927 3.823402 TAGAGGCGCTCTACCACG 58.177 61.111 7.64 0.00 41.50 4.94
2265 7933 1.820481 GTCGGAGTAGAGGCGCTCT 60.820 63.158 7.64 10.95 43.83 4.09
2303 8244 3.522731 CGGCTGGTCGGAGGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
2421 8492 3.642755 GGCTATGATTGGCCGTCG 58.357 61.111 0.00 0.00 39.96 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.