Multiple sequence alignment - TraesCS6A01G420200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G420200 chr6A 100.000 2782 0 0 1 2782 617096222 617099003 0.000000e+00 5138.0
1 TraesCS6A01G420200 chr6A 84.247 146 23 0 487 632 441485672 441485817 2.890000e-30 143.0
2 TraesCS6A01G420200 chr6B 90.451 1131 57 16 1673 2782 717596360 717595260 0.000000e+00 1443.0
3 TraesCS6A01G420200 chr6B 92.326 860 36 11 833 1680 717597231 717596390 0.000000e+00 1195.0
4 TraesCS6A01G420200 chr6B 89.864 513 26 11 630 1135 114938243 114937750 1.090000e-178 636.0
5 TraesCS6A01G420200 chr6B 89.671 213 15 7 633 841 717602104 717601895 5.910000e-67 265.0
6 TraesCS6A01G420200 chr6B 84.106 151 19 2 487 634 486082278 486082426 1.040000e-29 141.0
7 TraesCS6A01G420200 chr6B 86.667 60 1 1 2150 2202 119842697 119842756 2.990000e-05 60.2
8 TraesCS6A01G420200 chr6D 89.538 1061 61 20 630 1680 472569305 472568285 0.000000e+00 1299.0
9 TraesCS6A01G420200 chr6D 88.652 564 27 19 2239 2782 472567821 472567275 0.000000e+00 652.0
10 TraesCS6A01G420200 chr6D 90.435 230 16 5 1907 2133 312941754 312941528 5.830000e-77 298.0
11 TraesCS6A01G420200 chr6D 83.673 147 23 1 487 632 306128500 306128646 1.340000e-28 137.0
12 TraesCS6A01G420200 chr6D 94.737 76 1 2 1673 1746 472568261 472568187 6.300000e-22 115.0
13 TraesCS6A01G420200 chr4D 90.295 237 16 5 1916 2147 374302709 374302475 1.250000e-78 303.0
14 TraesCS6A01G420200 chr4D 84.091 132 19 2 1336 1466 483041301 483041171 2.910000e-25 126.0
15 TraesCS6A01G420200 chr1D 90.129 233 17 5 1911 2138 181630729 181630498 5.830000e-77 298.0
16 TraesCS6A01G420200 chr1D 87.050 139 16 2 499 636 23328205 23328068 3.710000e-34 156.0
17 TraesCS6A01G420200 chr7A 89.167 240 20 5 1911 2145 676345381 676345143 7.540000e-76 294.0
18 TraesCS6A01G420200 chr5D 88.980 245 18 7 1907 2146 298277243 298277483 7.540000e-76 294.0
19 TraesCS6A01G420200 chr5D 87.413 143 15 3 493 634 488387012 488386872 7.970000e-36 161.0
20 TraesCS6A01G420200 chr2D 89.610 231 19 5 1911 2138 306253992 306253764 3.510000e-74 289.0
21 TraesCS6A01G420200 chr2D 88.321 137 14 2 496 631 374103975 374103840 2.220000e-36 163.0
22 TraesCS6A01G420200 chr2D 81.633 98 17 1 51 147 301798908 301798811 2.300000e-11 80.5
23 TraesCS6A01G420200 chr5B 88.750 240 20 5 1911 2146 338970064 338969828 1.260000e-73 287.0
24 TraesCS6A01G420200 chr5B 78.924 223 34 10 630 847 87981493 87981707 3.740000e-29 139.0
25 TraesCS6A01G420200 chr5B 81.034 116 19 3 1 115 14997293 14997406 3.820000e-14 89.8
26 TraesCS6A01G420200 chr3A 88.430 242 19 6 1911 2146 267070261 267070023 1.630000e-72 283.0
27 TraesCS6A01G420200 chr3A 86.131 137 14 2 499 632 159996953 159996819 2.890000e-30 143.0
28 TraesCS6A01G420200 chr4A 84.354 147 21 1 487 631 685323228 685323374 2.890000e-30 143.0
29 TraesCS6A01G420200 chr4A 100.000 31 0 0 2186 2216 677992506 677992476 1.080000e-04 58.4
30 TraesCS6A01G420200 chr1A 84.672 137 17 2 499 633 372906170 372906036 1.740000e-27 134.0
31 TraesCS6A01G420200 chr5A 84.733 131 20 0 1336 1466 663189908 663189778 6.250000e-27 132.0
32 TraesCS6A01G420200 chr5A 97.059 34 1 0 2180 2213 457088993 457089026 1.080000e-04 58.4
33 TraesCS6A01G420200 chr7B 87.273 110 13 1 1 109 528876530 528876639 1.050000e-24 124.0
34 TraesCS6A01G420200 chr7B 81.690 142 26 0 1336 1477 734430598 734430739 4.870000e-23 119.0
35 TraesCS6A01G420200 chr7B 78.610 187 33 7 1 183 444173111 444172928 1.750000e-22 117.0
36 TraesCS6A01G420200 chr7B 87.755 98 10 1 1 98 733241019 733241114 2.260000e-21 113.0
37 TraesCS6A01G420200 chr4B 83.582 134 16 3 1336 1466 612877411 612877281 1.350000e-23 121.0
38 TraesCS6A01G420200 chrUn 87.755 98 12 0 1 98 219050464 219050561 6.300000e-22 115.0
39 TraesCS6A01G420200 chr3D 84.348 115 13 5 1 115 378911396 378911505 1.050000e-19 108.0
40 TraesCS6A01G420200 chr1B 90.000 80 7 1 321 400 310432849 310432771 4.900000e-18 102.0
41 TraesCS6A01G420200 chr1B 100.000 28 0 0 2188 2215 359224228 359224255 5.000000e-03 52.8
42 TraesCS6A01G420200 chr2B 87.209 86 10 1 321 406 426470180 426470096 2.280000e-16 97.1
43 TraesCS6A01G420200 chr3B 91.304 69 6 0 1 69 736870643 736870575 8.200000e-16 95.3
44 TraesCS6A01G420200 chr2A 81.301 123 17 6 1 123 757871987 757872103 8.200000e-16 95.3
45 TraesCS6A01G420200 chr2A 84.286 70 4 1 2152 2214 779873926 779873995 8.320000e-06 62.1
46 TraesCS6A01G420200 chr7D 90.000 50 3 2 2182 2229 149091741 149091790 2.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G420200 chr6A 617096222 617099003 2781 False 5138.000000 5138 100.000000 1 2782 1 chr6A.!!$F2 2781
1 TraesCS6A01G420200 chr6B 717595260 717597231 1971 True 1319.000000 1443 91.388500 833 2782 2 chr6B.!!$R3 1949
2 TraesCS6A01G420200 chr6D 472567275 472569305 2030 True 688.666667 1299 90.975667 630 2782 3 chr6D.!!$R2 2152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.107752 AGCTTCTTCCTAGCTGCTGC 60.108 55.0 13.43 7.62 46.71 5.25 F
471 472 0.108804 TCACTGAAATCGGTCTCGCC 60.109 55.0 0.00 0.00 36.13 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1482 0.168568 GAGGAGGTTGACGAGTCGAC 59.831 60.0 21.5 14.39 42.03 4.20 R
2001 2059 0.457035 GGCCGTATACCTCACGACAA 59.543 55.0 0.0 0.00 41.91 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.741029 GCCTAGTGCACTCGATCAA 57.259 52.632 25.56 3.16 40.77 2.57
29 30 2.231215 GCCTAGTGCACTCGATCAAT 57.769 50.000 25.56 0.00 40.77 2.57
30 31 1.863454 GCCTAGTGCACTCGATCAATG 59.137 52.381 25.56 4.14 40.77 2.82
31 32 1.863454 CCTAGTGCACTCGATCAATGC 59.137 52.381 25.56 6.00 39.88 3.56
32 33 2.543641 CTAGTGCACTCGATCAATGCA 58.456 47.619 25.56 10.57 46.73 3.96
35 36 2.836479 TGCACTCGATCAATGCATTG 57.164 45.000 29.75 29.75 44.17 2.82
47 48 3.304041 TGCATTGAGAGTTGCACGA 57.696 47.368 0.00 0.00 43.54 4.35
48 49 0.867746 TGCATTGAGAGTTGCACGAC 59.132 50.000 0.00 0.00 43.54 4.34
49 50 0.166814 GCATTGAGAGTTGCACGACC 59.833 55.000 0.00 0.00 38.72 4.79
50 51 0.798776 CATTGAGAGTTGCACGACCC 59.201 55.000 0.00 0.00 0.00 4.46
51 52 0.396435 ATTGAGAGTTGCACGACCCA 59.604 50.000 0.00 0.00 0.00 4.51
52 53 0.179234 TTGAGAGTTGCACGACCCAA 59.821 50.000 0.00 0.00 0.00 4.12
53 54 0.179234 TGAGAGTTGCACGACCCAAA 59.821 50.000 0.00 0.00 0.00 3.28
54 55 0.586802 GAGAGTTGCACGACCCAAAC 59.413 55.000 0.00 0.00 0.00 2.93
55 56 0.818040 AGAGTTGCACGACCCAAACC 60.818 55.000 0.00 0.00 0.00 3.27
56 57 0.818040 GAGTTGCACGACCCAAACCT 60.818 55.000 0.00 0.00 0.00 3.50
57 58 0.818040 AGTTGCACGACCCAAACCTC 60.818 55.000 0.00 0.00 0.00 3.85
58 59 1.098712 GTTGCACGACCCAAACCTCA 61.099 55.000 0.00 0.00 0.00 3.86
59 60 0.179004 TTGCACGACCCAAACCTCAT 60.179 50.000 0.00 0.00 0.00 2.90
60 61 0.605319 TGCACGACCCAAACCTCATC 60.605 55.000 0.00 0.00 0.00 2.92
61 62 0.321653 GCACGACCCAAACCTCATCT 60.322 55.000 0.00 0.00 0.00 2.90
62 63 1.882352 GCACGACCCAAACCTCATCTT 60.882 52.381 0.00 0.00 0.00 2.40
63 64 2.076863 CACGACCCAAACCTCATCTTC 58.923 52.381 0.00 0.00 0.00 2.87
64 65 1.978580 ACGACCCAAACCTCATCTTCT 59.021 47.619 0.00 0.00 0.00 2.85
65 66 3.056107 CACGACCCAAACCTCATCTTCTA 60.056 47.826 0.00 0.00 0.00 2.10
66 67 3.056035 ACGACCCAAACCTCATCTTCTAC 60.056 47.826 0.00 0.00 0.00 2.59
67 68 3.056107 CGACCCAAACCTCATCTTCTACA 60.056 47.826 0.00 0.00 0.00 2.74
68 69 4.383118 CGACCCAAACCTCATCTTCTACAT 60.383 45.833 0.00 0.00 0.00 2.29
69 70 4.848357 ACCCAAACCTCATCTTCTACATG 58.152 43.478 0.00 0.00 0.00 3.21
70 71 4.202441 CCCAAACCTCATCTTCTACATGG 58.798 47.826 0.00 0.00 0.00 3.66
71 72 4.324563 CCCAAACCTCATCTTCTACATGGT 60.325 45.833 0.00 0.00 0.00 3.55
72 73 5.104527 CCCAAACCTCATCTTCTACATGGTA 60.105 44.000 0.00 0.00 0.00 3.25
73 74 6.409695 CCCAAACCTCATCTTCTACATGGTAT 60.410 42.308 0.00 0.00 0.00 2.73
74 75 6.708054 CCAAACCTCATCTTCTACATGGTATC 59.292 42.308 0.00 0.00 0.00 2.24
75 76 7.419518 CCAAACCTCATCTTCTACATGGTATCT 60.420 40.741 0.00 0.00 0.00 1.98
76 77 8.642432 CAAACCTCATCTTCTACATGGTATCTA 58.358 37.037 0.00 0.00 0.00 1.98
77 78 8.964533 AACCTCATCTTCTACATGGTATCTAT 57.035 34.615 0.00 0.00 0.00 1.98
78 79 8.588290 ACCTCATCTTCTACATGGTATCTATC 57.412 38.462 0.00 0.00 0.00 2.08
79 80 7.338196 ACCTCATCTTCTACATGGTATCTATCG 59.662 40.741 0.00 0.00 0.00 2.92
80 81 7.089770 TCATCTTCTACATGGTATCTATCGC 57.910 40.000 0.00 0.00 0.00 4.58
81 82 6.659242 TCATCTTCTACATGGTATCTATCGCA 59.341 38.462 0.00 0.00 0.00 5.10
82 83 6.502136 TCTTCTACATGGTATCTATCGCAG 57.498 41.667 0.00 0.00 0.00 5.18
83 84 5.416013 TCTTCTACATGGTATCTATCGCAGG 59.584 44.000 0.00 0.00 0.00 4.85
84 85 2.751166 ACATGGTATCTATCGCAGGC 57.249 50.000 0.00 0.00 0.00 4.85
85 86 1.276421 ACATGGTATCTATCGCAGGCC 59.724 52.381 0.00 0.00 0.00 5.19
86 87 0.532573 ATGGTATCTATCGCAGGCCG 59.467 55.000 0.00 0.00 38.61 6.13
94 95 2.184322 TCGCAGGCCGATTCTGAC 59.816 61.111 0.00 0.00 41.89 3.51
95 96 2.892425 CGCAGGCCGATTCTGACC 60.892 66.667 0.00 0.00 40.02 4.02
96 97 2.586792 GCAGGCCGATTCTGACCT 59.413 61.111 0.00 0.00 34.36 3.85
97 98 1.823295 GCAGGCCGATTCTGACCTA 59.177 57.895 0.00 0.00 34.36 3.08
98 99 0.249657 GCAGGCCGATTCTGACCTAG 60.250 60.000 0.00 0.00 34.36 3.02
99 100 0.249657 CAGGCCGATTCTGACCTAGC 60.250 60.000 0.00 0.00 34.36 3.42
100 101 1.069935 GGCCGATTCTGACCTAGCC 59.930 63.158 0.00 0.00 0.00 3.93
101 102 1.403687 GGCCGATTCTGACCTAGCCT 61.404 60.000 0.00 0.00 36.00 4.58
102 103 0.466124 GCCGATTCTGACCTAGCCTT 59.534 55.000 0.00 0.00 0.00 4.35
103 104 1.687123 GCCGATTCTGACCTAGCCTTA 59.313 52.381 0.00 0.00 0.00 2.69
104 105 2.288518 GCCGATTCTGACCTAGCCTTAG 60.289 54.545 0.00 0.00 0.00 2.18
105 106 2.288518 CCGATTCTGACCTAGCCTTAGC 60.289 54.545 0.00 0.00 40.32 3.09
106 107 2.288518 CGATTCTGACCTAGCCTTAGCC 60.289 54.545 0.00 0.00 41.25 3.93
107 108 1.112113 TTCTGACCTAGCCTTAGCCG 58.888 55.000 0.00 0.00 41.25 5.52
108 109 1.068250 CTGACCTAGCCTTAGCCGC 59.932 63.158 0.00 0.00 41.25 6.53
109 110 1.381327 TGACCTAGCCTTAGCCGCT 60.381 57.895 0.00 0.00 41.25 5.52
110 111 1.068250 GACCTAGCCTTAGCCGCTG 59.932 63.158 2.16 0.00 41.25 5.18
111 112 2.280457 CCTAGCCTTAGCCGCTGC 60.280 66.667 2.16 0.00 41.25 5.25
112 113 2.280457 CTAGCCTTAGCCGCTGCC 60.280 66.667 2.16 0.00 41.25 4.85
113 114 4.221422 TAGCCTTAGCCGCTGCCG 62.221 66.667 2.16 0.00 41.25 5.69
195 196 3.066190 CACCCACCTCCGTCGCTA 61.066 66.667 0.00 0.00 0.00 4.26
196 197 3.066814 ACCCACCTCCGTCGCTAC 61.067 66.667 0.00 0.00 0.00 3.58
197 198 3.834799 CCCACCTCCGTCGCTACC 61.835 72.222 0.00 0.00 0.00 3.18
198 199 3.834799 CCACCTCCGTCGCTACCC 61.835 72.222 0.00 0.00 0.00 3.69
199 200 4.189188 CACCTCCGTCGCTACCCG 62.189 72.222 0.00 0.00 38.61 5.28
258 259 2.046507 CTGCCGCAGCTTCTTCCT 60.047 61.111 7.61 0.00 40.80 3.36
259 260 1.219124 CTGCCGCAGCTTCTTCCTA 59.781 57.895 7.61 0.00 40.80 2.94
260 261 0.809241 CTGCCGCAGCTTCTTCCTAG 60.809 60.000 7.61 0.00 40.80 3.02
261 262 2.176926 GCCGCAGCTTCTTCCTAGC 61.177 63.158 0.00 0.00 38.93 3.42
267 268 0.107752 AGCTTCTTCCTAGCTGCTGC 60.108 55.000 13.43 7.62 46.71 5.25
268 269 1.094650 GCTTCTTCCTAGCTGCTGCC 61.095 60.000 13.43 0.00 40.80 4.85
269 270 0.809241 CTTCTTCCTAGCTGCTGCCG 60.809 60.000 13.43 3.78 40.80 5.69
270 271 2.859273 TTCTTCCTAGCTGCTGCCGC 62.859 60.000 13.43 8.06 40.80 6.53
271 272 4.473520 TTCCTAGCTGCTGCCGCC 62.474 66.667 13.43 0.00 40.80 6.13
289 290 4.814294 GCCCCGTGACGCTACCTG 62.814 72.222 0.00 0.00 0.00 4.00
290 291 4.814294 CCCCGTGACGCTACCTGC 62.814 72.222 0.00 0.00 38.57 4.85
291 292 3.760035 CCCGTGACGCTACCTGCT 61.760 66.667 0.00 0.00 40.11 4.24
292 293 2.202623 CCGTGACGCTACCTGCTC 60.203 66.667 0.00 0.00 40.11 4.26
293 294 2.202623 CGTGACGCTACCTGCTCC 60.203 66.667 0.00 0.00 40.11 4.70
294 295 2.184579 GTGACGCTACCTGCTCCC 59.815 66.667 0.00 0.00 40.11 4.30
295 296 2.037367 TGACGCTACCTGCTCCCT 59.963 61.111 0.00 0.00 40.11 4.20
296 297 2.052690 TGACGCTACCTGCTCCCTC 61.053 63.158 0.00 0.00 40.11 4.30
297 298 1.755008 GACGCTACCTGCTCCCTCT 60.755 63.158 0.00 0.00 40.11 3.69
298 299 1.730451 GACGCTACCTGCTCCCTCTC 61.730 65.000 0.00 0.00 40.11 3.20
299 300 2.840066 CGCTACCTGCTCCCTCTCG 61.840 68.421 0.00 0.00 40.11 4.04
300 301 3.124686 CTACCTGCTCCCTCTCGC 58.875 66.667 0.00 0.00 0.00 5.03
301 302 1.454847 CTACCTGCTCCCTCTCGCT 60.455 63.158 0.00 0.00 0.00 4.93
302 303 1.000486 TACCTGCTCCCTCTCGCTT 60.000 57.895 0.00 0.00 0.00 4.68
303 304 1.038130 TACCTGCTCCCTCTCGCTTC 61.038 60.000 0.00 0.00 0.00 3.86
304 305 2.498726 CTGCTCCCTCTCGCTTCC 59.501 66.667 0.00 0.00 0.00 3.46
305 306 3.423162 CTGCTCCCTCTCGCTTCCG 62.423 68.421 0.00 0.00 0.00 4.30
306 307 4.882396 GCTCCCTCTCGCTTCCGC 62.882 72.222 0.00 0.00 0.00 5.54
307 308 4.214327 CTCCCTCTCGCTTCCGCC 62.214 72.222 0.00 0.00 0.00 6.13
309 310 4.082523 CCCTCTCGCTTCCGCCAA 62.083 66.667 0.00 0.00 0.00 4.52
310 311 2.815647 CCTCTCGCTTCCGCCAAC 60.816 66.667 0.00 0.00 0.00 3.77
311 312 2.815647 CTCTCGCTTCCGCCAACC 60.816 66.667 0.00 0.00 0.00 3.77
312 313 4.735132 TCTCGCTTCCGCCAACCG 62.735 66.667 0.00 0.00 0.00 4.44
329 330 3.313750 GCCGCTGCGAGTTCTATG 58.686 61.111 25.45 4.87 0.00 2.23
330 331 2.240500 GCCGCTGCGAGTTCTATGG 61.241 63.158 25.45 4.08 0.00 2.74
331 332 1.592669 CCGCTGCGAGTTCTATGGG 60.593 63.158 25.45 0.00 0.00 4.00
332 333 1.141881 CGCTGCGAGTTCTATGGGT 59.858 57.895 18.66 0.00 0.00 4.51
333 334 1.148157 CGCTGCGAGTTCTATGGGTG 61.148 60.000 18.66 0.00 0.00 4.61
334 335 0.175760 GCTGCGAGTTCTATGGGTGA 59.824 55.000 0.00 0.00 0.00 4.02
335 336 1.927895 CTGCGAGTTCTATGGGTGAC 58.072 55.000 0.00 0.00 0.00 3.67
336 337 1.204704 CTGCGAGTTCTATGGGTGACA 59.795 52.381 0.00 0.00 0.00 3.58
337 338 1.204704 TGCGAGTTCTATGGGTGACAG 59.795 52.381 0.00 0.00 0.00 3.51
338 339 1.927895 CGAGTTCTATGGGTGACAGC 58.072 55.000 0.00 0.00 0.00 4.40
339 340 1.204704 CGAGTTCTATGGGTGACAGCA 59.795 52.381 7.01 0.00 0.00 4.41
340 341 2.736719 CGAGTTCTATGGGTGACAGCAG 60.737 54.545 7.01 0.00 0.00 4.24
341 342 1.065854 AGTTCTATGGGTGACAGCAGC 60.066 52.381 7.01 0.00 41.69 5.25
342 343 1.065854 GTTCTATGGGTGACAGCAGCT 60.066 52.381 7.01 0.00 42.08 4.24
343 344 1.279496 TCTATGGGTGACAGCAGCTT 58.721 50.000 7.01 0.00 42.08 3.74
344 345 1.065926 TCTATGGGTGACAGCAGCTTG 60.066 52.381 7.01 0.00 42.08 4.01
345 346 0.983467 TATGGGTGACAGCAGCTTGA 59.017 50.000 7.01 0.00 42.08 3.02
346 347 0.322277 ATGGGTGACAGCAGCTTGAG 60.322 55.000 7.01 0.00 42.08 3.02
347 348 1.072159 GGGTGACAGCAGCTTGAGT 59.928 57.895 7.01 0.00 42.08 3.41
348 349 0.952984 GGGTGACAGCAGCTTGAGTC 60.953 60.000 7.01 0.00 42.08 3.36
349 350 1.287730 GGTGACAGCAGCTTGAGTCG 61.288 60.000 0.00 0.00 39.38 4.18
350 351 0.598680 GTGACAGCAGCTTGAGTCGT 60.599 55.000 0.00 0.00 33.83 4.34
351 352 0.319040 TGACAGCAGCTTGAGTCGTC 60.319 55.000 0.00 0.00 33.83 4.20
352 353 1.005630 ACAGCAGCTTGAGTCGTCC 60.006 57.895 0.00 0.00 0.00 4.79
353 354 1.005748 CAGCAGCTTGAGTCGTCCA 60.006 57.895 0.00 0.00 0.00 4.02
354 355 0.390866 CAGCAGCTTGAGTCGTCCAT 60.391 55.000 0.00 0.00 0.00 3.41
355 356 0.322975 AGCAGCTTGAGTCGTCCATT 59.677 50.000 0.00 0.00 0.00 3.16
356 357 0.445436 GCAGCTTGAGTCGTCCATTG 59.555 55.000 0.00 0.00 0.00 2.82
357 358 1.941209 GCAGCTTGAGTCGTCCATTGA 60.941 52.381 0.00 0.00 0.00 2.57
358 359 1.728971 CAGCTTGAGTCGTCCATTGAC 59.271 52.381 0.00 0.00 38.18 3.18
369 370 3.559238 GTCCATTGACGACTTTTGCAT 57.441 42.857 0.00 0.00 0.00 3.96
370 371 3.236816 GTCCATTGACGACTTTTGCATG 58.763 45.455 0.00 0.00 0.00 4.06
371 372 1.987770 CCATTGACGACTTTTGCATGC 59.012 47.619 11.82 11.82 0.00 4.06
372 373 1.645265 CATTGACGACTTTTGCATGCG 59.355 47.619 14.09 0.35 0.00 4.73
373 374 0.660005 TTGACGACTTTTGCATGCGC 60.660 50.000 14.09 0.00 39.24 6.09
374 375 1.797537 GACGACTTTTGCATGCGCC 60.798 57.895 14.09 0.00 37.32 6.53
375 376 2.504681 CGACTTTTGCATGCGCCC 60.505 61.111 14.09 0.00 37.32 6.13
376 377 2.964978 GACTTTTGCATGCGCCCT 59.035 55.556 14.09 0.00 37.32 5.19
377 378 1.153958 GACTTTTGCATGCGCCCTC 60.154 57.895 14.09 0.00 37.32 4.30
378 379 1.865788 GACTTTTGCATGCGCCCTCA 61.866 55.000 14.09 0.00 37.32 3.86
379 380 1.289694 CTTTTGCATGCGCCCTCAA 59.710 52.632 14.09 2.76 37.32 3.02
380 381 0.734942 CTTTTGCATGCGCCCTCAAG 60.735 55.000 14.09 4.75 37.32 3.02
381 382 1.177895 TTTTGCATGCGCCCTCAAGA 61.178 50.000 14.09 0.00 37.32 3.02
382 383 1.177895 TTTGCATGCGCCCTCAAGAA 61.178 50.000 14.09 0.00 37.32 2.52
383 384 1.588824 TTGCATGCGCCCTCAAGAAG 61.589 55.000 14.09 0.00 37.32 2.85
384 385 2.796651 CATGCGCCCTCAAGAAGC 59.203 61.111 4.18 0.00 0.00 3.86
385 386 1.748122 CATGCGCCCTCAAGAAGCT 60.748 57.895 4.18 0.00 0.00 3.74
386 387 1.001641 ATGCGCCCTCAAGAAGCTT 60.002 52.632 4.18 0.00 0.00 3.74
387 388 1.310933 ATGCGCCCTCAAGAAGCTTG 61.311 55.000 2.10 0.84 0.00 4.01
388 389 2.873288 CGCCCTCAAGAAGCTTGC 59.127 61.111 2.10 0.00 0.00 4.01
389 390 2.694760 CGCCCTCAAGAAGCTTGCC 61.695 63.158 2.10 0.00 0.00 4.52
390 391 1.604593 GCCCTCAAGAAGCTTGCCA 60.605 57.895 2.10 0.00 0.00 4.92
391 392 1.181098 GCCCTCAAGAAGCTTGCCAA 61.181 55.000 2.10 0.00 0.00 4.52
392 393 0.600057 CCCTCAAGAAGCTTGCCAAC 59.400 55.000 2.10 0.00 0.00 3.77
393 394 0.239347 CCTCAAGAAGCTTGCCAACG 59.761 55.000 2.10 0.00 0.00 4.10
394 395 1.229428 CTCAAGAAGCTTGCCAACGA 58.771 50.000 2.10 0.00 0.00 3.85
395 396 1.196354 CTCAAGAAGCTTGCCAACGAG 59.804 52.381 2.10 0.00 0.00 4.18
401 402 3.793144 CTTGCCAACGAGCTCCGC 61.793 66.667 8.47 5.49 43.32 5.54
405 406 2.956964 CCAACGAGCTCCGCGATC 60.957 66.667 8.23 0.00 43.32 3.69
406 407 2.202610 CAACGAGCTCCGCGATCA 60.203 61.111 8.23 0.00 43.32 2.92
407 408 1.589993 CAACGAGCTCCGCGATCAT 60.590 57.895 8.23 0.00 43.32 2.45
408 409 1.141881 AACGAGCTCCGCGATCATT 59.858 52.632 8.23 0.00 43.32 2.57
409 410 0.460284 AACGAGCTCCGCGATCATTT 60.460 50.000 8.23 0.00 43.32 2.32
410 411 0.872021 ACGAGCTCCGCGATCATTTC 60.872 55.000 8.23 0.00 43.32 2.17
411 412 1.552348 CGAGCTCCGCGATCATTTCC 61.552 60.000 8.23 0.00 0.00 3.13
412 413 0.249657 GAGCTCCGCGATCATTTCCT 60.250 55.000 8.23 0.00 0.00 3.36
413 414 1.000163 GAGCTCCGCGATCATTTCCTA 60.000 52.381 8.23 0.00 0.00 2.94
414 415 1.620819 AGCTCCGCGATCATTTCCTAT 59.379 47.619 8.23 0.00 0.00 2.57
415 416 1.728971 GCTCCGCGATCATTTCCTATG 59.271 52.381 8.23 0.00 0.00 2.23
416 417 2.610479 GCTCCGCGATCATTTCCTATGA 60.610 50.000 8.23 0.00 0.00 2.15
417 418 3.249091 CTCCGCGATCATTTCCTATGAG 58.751 50.000 8.23 0.00 0.00 2.90
418 419 1.728971 CCGCGATCATTTCCTATGAGC 59.271 52.381 8.23 0.00 0.00 4.26
419 420 2.407090 CGCGATCATTTCCTATGAGCA 58.593 47.619 0.00 0.00 34.41 4.26
420 421 2.156504 CGCGATCATTTCCTATGAGCAC 59.843 50.000 0.00 0.00 34.41 4.40
421 422 3.133691 GCGATCATTTCCTATGAGCACA 58.866 45.455 4.22 0.00 34.41 4.57
422 423 3.750130 GCGATCATTTCCTATGAGCACAT 59.250 43.478 1.31 1.31 40.16 3.21
423 424 4.378149 GCGATCATTTCCTATGAGCACATG 60.378 45.833 6.91 0.00 37.87 3.21
424 425 4.992951 CGATCATTTCCTATGAGCACATGA 59.007 41.667 6.91 0.00 37.87 3.07
425 426 5.107182 CGATCATTTCCTATGAGCACATGAC 60.107 44.000 6.91 0.00 37.87 3.06
426 427 5.363562 TCATTTCCTATGAGCACATGACT 57.636 39.130 6.91 0.00 37.87 3.41
427 428 5.121105 TCATTTCCTATGAGCACATGACTG 58.879 41.667 6.91 0.00 37.87 3.51
428 429 2.609427 TCCTATGAGCACATGACTGC 57.391 50.000 6.91 0.00 37.87 4.40
429 430 1.832998 TCCTATGAGCACATGACTGCA 59.167 47.619 6.91 0.00 39.86 4.41
430 431 2.159000 TCCTATGAGCACATGACTGCAG 60.159 50.000 13.48 13.48 39.86 4.41
431 432 2.210961 CTATGAGCACATGACTGCAGG 58.789 52.381 19.93 1.96 39.86 4.85
432 433 1.030488 ATGAGCACATGACTGCAGGC 61.030 55.000 19.93 17.40 39.86 4.85
433 434 2.360852 AGCACATGACTGCAGGCC 60.361 61.111 19.23 9.36 39.86 5.19
434 435 3.446570 GCACATGACTGCAGGCCC 61.447 66.667 19.23 6.59 37.11 5.80
435 436 2.353958 CACATGACTGCAGGCCCT 59.646 61.111 19.23 0.42 0.00 5.19
436 437 1.303888 CACATGACTGCAGGCCCTT 60.304 57.895 19.23 0.00 0.00 3.95
437 438 0.896940 CACATGACTGCAGGCCCTTT 60.897 55.000 19.23 0.00 0.00 3.11
438 439 0.178953 ACATGACTGCAGGCCCTTTT 60.179 50.000 19.23 0.00 0.00 2.27
439 440 0.971386 CATGACTGCAGGCCCTTTTT 59.029 50.000 19.23 0.00 0.00 1.94
440 441 1.067354 CATGACTGCAGGCCCTTTTTC 60.067 52.381 19.23 3.19 0.00 2.29
441 442 0.185901 TGACTGCAGGCCCTTTTTCT 59.814 50.000 19.23 0.00 0.00 2.52
442 443 1.423541 TGACTGCAGGCCCTTTTTCTA 59.576 47.619 19.23 0.00 0.00 2.10
443 444 2.041620 TGACTGCAGGCCCTTTTTCTAT 59.958 45.455 19.23 0.00 0.00 1.98
444 445 3.092301 GACTGCAGGCCCTTTTTCTATT 58.908 45.455 19.93 0.00 0.00 1.73
445 446 3.510459 ACTGCAGGCCCTTTTTCTATTT 58.490 40.909 19.93 0.00 0.00 1.40
446 447 3.903714 ACTGCAGGCCCTTTTTCTATTTT 59.096 39.130 19.93 0.00 0.00 1.82
447 448 4.021104 ACTGCAGGCCCTTTTTCTATTTTC 60.021 41.667 19.93 0.00 0.00 2.29
448 449 3.056891 TGCAGGCCCTTTTTCTATTTTCG 60.057 43.478 0.00 0.00 0.00 3.46
449 450 3.056821 GCAGGCCCTTTTTCTATTTTCGT 60.057 43.478 0.00 0.00 0.00 3.85
450 451 4.157105 GCAGGCCCTTTTTCTATTTTCGTA 59.843 41.667 0.00 0.00 0.00 3.43
451 452 5.163550 GCAGGCCCTTTTTCTATTTTCGTAT 60.164 40.000 0.00 0.00 0.00 3.06
452 453 6.627287 GCAGGCCCTTTTTCTATTTTCGTATT 60.627 38.462 0.00 0.00 0.00 1.89
453 454 6.972901 CAGGCCCTTTTTCTATTTTCGTATTC 59.027 38.462 0.00 0.00 0.00 1.75
454 455 6.661805 AGGCCCTTTTTCTATTTTCGTATTCA 59.338 34.615 0.00 0.00 0.00 2.57
455 456 6.750501 GGCCCTTTTTCTATTTTCGTATTCAC 59.249 38.462 0.00 0.00 0.00 3.18
456 457 7.362660 GGCCCTTTTTCTATTTTCGTATTCACT 60.363 37.037 0.00 0.00 0.00 3.41
457 458 7.484959 GCCCTTTTTCTATTTTCGTATTCACTG 59.515 37.037 0.00 0.00 0.00 3.66
458 459 8.726988 CCCTTTTTCTATTTTCGTATTCACTGA 58.273 33.333 0.00 0.00 0.00 3.41
463 464 9.967245 TTTCTATTTTCGTATTCACTGAAATCG 57.033 29.630 10.67 10.67 31.81 3.34
464 465 8.126871 TCTATTTTCGTATTCACTGAAATCGG 57.873 34.615 14.55 0.00 31.81 4.18
465 466 6.737254 ATTTTCGTATTCACTGAAATCGGT 57.263 33.333 14.55 0.00 35.46 4.69
466 467 5.773239 TTTCGTATTCACTGAAATCGGTC 57.227 39.130 14.55 0.00 32.07 4.79
467 468 4.713824 TCGTATTCACTGAAATCGGTCT 57.286 40.909 14.55 0.00 32.07 3.85
468 469 4.669318 TCGTATTCACTGAAATCGGTCTC 58.331 43.478 14.55 0.00 32.07 3.36
469 470 3.482472 CGTATTCACTGAAATCGGTCTCG 59.518 47.826 0.00 0.00 32.07 4.04
470 471 1.710013 TTCACTGAAATCGGTCTCGC 58.290 50.000 0.00 0.00 36.13 5.03
471 472 0.108804 TCACTGAAATCGGTCTCGCC 60.109 55.000 0.00 0.00 36.13 5.54
483 484 2.931228 GGTCTCGCCGAACTATATCAC 58.069 52.381 0.00 0.00 0.00 3.06
484 485 2.553172 GGTCTCGCCGAACTATATCACT 59.447 50.000 0.00 0.00 0.00 3.41
485 486 3.556513 GTCTCGCCGAACTATATCACTG 58.443 50.000 0.00 0.00 0.00 3.66
486 487 3.250280 GTCTCGCCGAACTATATCACTGA 59.750 47.826 0.00 0.00 0.00 3.41
487 488 3.881089 TCTCGCCGAACTATATCACTGAA 59.119 43.478 0.00 0.00 0.00 3.02
488 489 4.337274 TCTCGCCGAACTATATCACTGAAA 59.663 41.667 0.00 0.00 0.00 2.69
489 490 5.009710 TCTCGCCGAACTATATCACTGAAAT 59.990 40.000 0.00 0.00 0.00 2.17
490 491 5.220381 TCGCCGAACTATATCACTGAAATC 58.780 41.667 0.00 0.00 0.00 2.17
491 492 4.088638 CGCCGAACTATATCACTGAAATCG 59.911 45.833 0.00 0.00 0.00 3.34
492 493 4.982916 GCCGAACTATATCACTGAAATCGT 59.017 41.667 0.00 0.00 0.00 3.73
493 494 6.147581 GCCGAACTATATCACTGAAATCGTA 58.852 40.000 0.00 0.00 0.00 3.43
494 495 6.087820 GCCGAACTATATCACTGAAATCGTAC 59.912 42.308 0.00 0.00 0.00 3.67
495 496 6.581542 CCGAACTATATCACTGAAATCGTACC 59.418 42.308 0.00 0.00 0.00 3.34
496 497 7.136772 CGAACTATATCACTGAAATCGTACCA 58.863 38.462 0.00 0.00 0.00 3.25
497 498 7.113124 CGAACTATATCACTGAAATCGTACCAC 59.887 40.741 0.00 0.00 0.00 4.16
498 499 7.584122 ACTATATCACTGAAATCGTACCACT 57.416 36.000 0.00 0.00 0.00 4.00
499 500 7.426410 ACTATATCACTGAAATCGTACCACTG 58.574 38.462 0.00 0.00 0.00 3.66
500 501 4.801330 ATCACTGAAATCGTACCACTGA 57.199 40.909 0.00 0.00 0.00 3.41
501 502 4.594123 TCACTGAAATCGTACCACTGAA 57.406 40.909 0.00 0.00 0.00 3.02
502 503 5.147330 TCACTGAAATCGTACCACTGAAT 57.853 39.130 0.00 0.00 0.00 2.57
503 504 5.547465 TCACTGAAATCGTACCACTGAATT 58.453 37.500 0.00 0.00 0.00 2.17
504 505 5.637810 TCACTGAAATCGTACCACTGAATTC 59.362 40.000 0.00 0.00 0.00 2.17
505 506 5.408299 CACTGAAATCGTACCACTGAATTCA 59.592 40.000 8.12 8.12 34.02 2.57
506 507 6.092670 CACTGAAATCGTACCACTGAATTCAT 59.907 38.462 8.96 0.00 34.51 2.57
507 508 7.277760 CACTGAAATCGTACCACTGAATTCATA 59.722 37.037 8.96 0.00 34.51 2.15
508 509 7.987458 ACTGAAATCGTACCACTGAATTCATAT 59.013 33.333 8.96 0.00 34.51 1.78
509 510 8.731275 TGAAATCGTACCACTGAATTCATATT 57.269 30.769 8.96 0.00 31.07 1.28
510 511 9.173021 TGAAATCGTACCACTGAATTCATATTT 57.827 29.630 8.96 5.52 31.07 1.40
513 514 7.229228 TCGTACCACTGAATTCATATTTTCG 57.771 36.000 8.96 10.44 0.00 3.46
514 515 6.814644 TCGTACCACTGAATTCATATTTTCGT 59.185 34.615 8.96 0.00 0.00 3.85
515 516 7.975058 TCGTACCACTGAATTCATATTTTCGTA 59.025 33.333 8.96 0.91 0.00 3.43
516 517 8.761497 CGTACCACTGAATTCATATTTTCGTAT 58.239 33.333 8.96 0.00 0.00 3.06
517 518 9.864034 GTACCACTGAATTCATATTTTCGTATG 57.136 33.333 8.96 0.00 34.16 2.39
518 519 8.731275 ACCACTGAATTCATATTTTCGTATGA 57.269 30.769 8.96 0.00 38.85 2.15
542 543 8.623903 TGAATTCAGTGATATAATGTTTGCTCC 58.376 33.333 3.38 0.00 0.00 4.70
543 544 6.942532 TTCAGTGATATAATGTTTGCTCCC 57.057 37.500 0.00 0.00 0.00 4.30
544 545 6.252599 TCAGTGATATAATGTTTGCTCCCT 57.747 37.500 0.00 0.00 0.00 4.20
545 546 6.291377 TCAGTGATATAATGTTTGCTCCCTC 58.709 40.000 0.00 0.00 0.00 4.30
546 547 5.471456 CAGTGATATAATGTTTGCTCCCTCC 59.529 44.000 0.00 0.00 0.00 4.30
547 548 4.452455 GTGATATAATGTTTGCTCCCTCCG 59.548 45.833 0.00 0.00 0.00 4.63
548 549 1.680338 ATAATGTTTGCTCCCTCCGC 58.320 50.000 0.00 0.00 0.00 5.54
549 550 0.326595 TAATGTTTGCTCCCTCCGCA 59.673 50.000 0.00 0.00 35.22 5.69
550 551 0.962356 AATGTTTGCTCCCTCCGCAG 60.962 55.000 0.00 0.00 38.80 5.18
551 552 2.032681 GTTTGCTCCCTCCGCAGT 59.967 61.111 0.00 0.00 38.80 4.40
552 553 1.600916 GTTTGCTCCCTCCGCAGTT 60.601 57.895 0.00 0.00 38.80 3.16
553 554 1.600636 TTTGCTCCCTCCGCAGTTG 60.601 57.895 0.00 0.00 38.80 3.16
554 555 3.551496 TTGCTCCCTCCGCAGTTGG 62.551 63.158 0.00 0.00 38.80 3.77
555 556 4.021925 GCTCCCTCCGCAGTTGGT 62.022 66.667 0.00 0.00 0.00 3.67
556 557 2.266055 CTCCCTCCGCAGTTGGTC 59.734 66.667 0.00 0.00 0.00 4.02
557 558 2.203788 TCCCTCCGCAGTTGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
558 559 2.232298 CTCCCTCCGCAGTTGGTCTC 62.232 65.000 0.00 0.00 0.00 3.36
559 560 2.125912 CCTCCGCAGTTGGTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
560 561 2.651361 CTCCGCAGTTGGTCTCGT 59.349 61.111 0.00 0.00 0.00 4.18
561 562 1.006102 CTCCGCAGTTGGTCTCGTT 60.006 57.895 0.00 0.00 0.00 3.85
562 563 1.284982 CTCCGCAGTTGGTCTCGTTG 61.285 60.000 0.00 0.00 0.00 4.10
563 564 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
564 565 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
565 566 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
566 567 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
567 568 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
568 569 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
569 570 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
570 571 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
571 572 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
572 573 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
573 574 6.854381 CAGTTGGTCTCGTTGGTTAAATTTAC 59.146 38.462 0.00 0.00 0.00 2.01
574 575 5.594724 TGGTCTCGTTGGTTAAATTTACG 57.405 39.130 0.00 0.61 0.00 3.18
575 576 4.451774 TGGTCTCGTTGGTTAAATTTACGG 59.548 41.667 9.79 2.88 33.37 4.02
576 577 4.452114 GGTCTCGTTGGTTAAATTTACGGT 59.548 41.667 9.79 0.00 33.37 4.83
577 578 5.049474 GGTCTCGTTGGTTAAATTTACGGTT 60.049 40.000 9.79 0.00 33.37 4.44
578 579 6.147000 GGTCTCGTTGGTTAAATTTACGGTTA 59.853 38.462 9.79 0.00 33.37 2.85
579 580 7.307692 GGTCTCGTTGGTTAAATTTACGGTTAA 60.308 37.037 9.79 0.00 33.37 2.01
580 581 8.067189 GTCTCGTTGGTTAAATTTACGGTTAAA 58.933 33.333 9.79 0.00 33.37 1.52
581 582 8.782144 TCTCGTTGGTTAAATTTACGGTTAAAT 58.218 29.630 9.79 0.00 39.22 1.40
582 583 9.396938 CTCGTTGGTTAAATTTACGGTTAAATT 57.603 29.630 9.79 0.00 45.82 1.82
592 593 6.425577 TTTACGGTTAAATTTGGATCTCGG 57.574 37.500 0.00 0.00 0.00 4.63
593 594 3.275999 ACGGTTAAATTTGGATCTCGGG 58.724 45.455 0.00 0.00 0.00 5.14
594 595 3.054948 ACGGTTAAATTTGGATCTCGGGA 60.055 43.478 0.00 0.00 0.00 5.14
595 596 3.942748 CGGTTAAATTTGGATCTCGGGAA 59.057 43.478 0.00 0.00 0.00 3.97
596 597 4.035208 CGGTTAAATTTGGATCTCGGGAAG 59.965 45.833 0.00 0.00 0.00 3.46
597 598 4.202020 GGTTAAATTTGGATCTCGGGAAGC 60.202 45.833 0.00 0.00 0.00 3.86
598 599 1.668419 AATTTGGATCTCGGGAAGCG 58.332 50.000 0.00 0.00 0.00 4.68
599 600 0.815615 ATTTGGATCTCGGGAAGCGC 60.816 55.000 0.00 0.00 0.00 5.92
600 601 3.716539 TTGGATCTCGGGAAGCGCG 62.717 63.158 0.00 0.00 41.10 6.86
601 602 4.951963 GGATCTCGGGAAGCGCGG 62.952 72.222 8.83 0.00 40.17 6.46
602 603 4.951963 GATCTCGGGAAGCGCGGG 62.952 72.222 8.83 0.00 41.67 6.13
615 616 4.016706 GCGGGGGCACTACACTGT 62.017 66.667 0.00 0.00 0.00 3.55
616 617 2.047274 CGGGGGCACTACACTGTG 60.047 66.667 6.19 6.19 40.62 3.66
617 618 2.579657 CGGGGGCACTACACTGTGA 61.580 63.158 15.86 0.00 40.12 3.58
618 619 1.758592 GGGGGCACTACACTGTGAA 59.241 57.895 15.86 0.00 40.12 3.18
619 620 0.109723 GGGGGCACTACACTGTGAAA 59.890 55.000 15.86 1.09 40.12 2.69
620 621 1.271926 GGGGGCACTACACTGTGAAAT 60.272 52.381 15.86 0.00 40.12 2.17
621 622 1.812571 GGGGCACTACACTGTGAAATG 59.187 52.381 15.86 9.77 40.12 2.32
622 623 1.812571 GGGCACTACACTGTGAAATGG 59.187 52.381 15.86 0.00 40.12 3.16
623 624 2.552155 GGGCACTACACTGTGAAATGGA 60.552 50.000 15.86 0.00 40.12 3.41
624 625 2.744202 GGCACTACACTGTGAAATGGAG 59.256 50.000 15.86 4.30 40.12 3.86
625 626 2.744202 GCACTACACTGTGAAATGGAGG 59.256 50.000 15.86 0.00 40.12 4.30
626 627 3.338249 CACTACACTGTGAAATGGAGGG 58.662 50.000 15.86 0.00 40.12 4.30
627 628 3.007940 CACTACACTGTGAAATGGAGGGA 59.992 47.826 15.86 0.00 40.12 4.20
628 629 2.867109 ACACTGTGAAATGGAGGGAG 57.133 50.000 15.86 0.00 0.00 4.30
637 638 6.755206 TGTGAAATGGAGGGAGTATTATACG 58.245 40.000 0.00 0.00 0.00 3.06
661 662 6.453791 CGTCACTATTCACACTATTTTGACCG 60.454 42.308 0.00 0.00 0.00 4.79
662 663 6.588756 GTCACTATTCACACTATTTTGACCGA 59.411 38.462 0.00 0.00 0.00 4.69
746 748 8.519799 CCAATACAATGGTAGGTCAAGTTTAT 57.480 34.615 0.00 0.00 35.65 1.40
752 754 9.088987 ACAATGGTAGGTCAAGTTTATTTCAAT 57.911 29.630 0.00 0.00 0.00 2.57
818 820 9.998106 ATGTTCTTTACCATATAGGATGTACAC 57.002 33.333 0.00 0.00 41.22 2.90
819 821 9.209048 TGTTCTTTACCATATAGGATGTACACT 57.791 33.333 0.00 0.00 41.22 3.55
1031 1035 2.379972 GAGCCTTGTCCACTCTAGCTA 58.620 52.381 0.00 0.00 0.00 3.32
1032 1036 2.360801 GAGCCTTGTCCACTCTAGCTAG 59.639 54.545 15.01 15.01 0.00 3.42
1033 1037 1.202475 GCCTTGTCCACTCTAGCTAGC 60.202 57.143 16.35 6.62 0.00 3.42
1034 1038 2.383855 CCTTGTCCACTCTAGCTAGCT 58.616 52.381 23.12 23.12 0.00 3.32
1321 1328 1.202976 ACAGCAGTGAAAGAAGGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
1492 1505 1.154263 CGTCGACTCGTCAACCTCC 60.154 63.158 14.70 0.00 0.00 4.30
1495 1508 1.134901 CGACTCGTCAACCTCCTCG 59.865 63.158 0.00 0.00 0.00 4.63
1497 1510 0.168568 GACTCGTCAACCTCCTCGTC 59.831 60.000 0.00 0.00 0.00 4.20
1501 1514 1.241990 CGTCAACCTCCTCGTCCTCA 61.242 60.000 0.00 0.00 0.00 3.86
1507 1520 4.671590 TCCTCGTCCTCACCGCCA 62.672 66.667 0.00 0.00 0.00 5.69
1508 1521 3.461773 CCTCGTCCTCACCGCCAT 61.462 66.667 0.00 0.00 0.00 4.40
1510 1523 2.678580 TCGTCCTCACCGCCATCA 60.679 61.111 0.00 0.00 0.00 3.07
1594 1607 1.949547 GCCACTTCTGCTTCTGCTGAT 60.950 52.381 0.00 0.00 44.51 2.90
1654 1673 5.067936 AGACAACATCGATCCTAGTAGTTGG 59.932 44.000 20.13 8.12 39.18 3.77
1748 1806 9.608617 ACTAGAATTGTACGTATGTATTCATCG 57.391 33.333 20.03 13.54 35.70 3.84
1749 1807 9.608617 CTAGAATTGTACGTATGTATTCATCGT 57.391 33.333 20.03 11.95 39.29 3.73
1751 1809 9.955208 AGAATTGTACGTATGTATTCATCGTAA 57.045 29.630 20.03 6.72 39.31 3.18
1753 1811 7.613247 TTGTACGTATGTATTCATCGTAAGC 57.387 36.000 13.95 7.59 39.31 3.09
1754 1812 6.962686 TGTACGTATGTATTCATCGTAAGCT 58.037 36.000 13.95 0.00 39.31 3.74
1755 1813 6.854381 TGTACGTATGTATTCATCGTAAGCTG 59.146 38.462 13.95 0.00 39.31 4.24
1756 1814 6.068473 ACGTATGTATTCATCGTAAGCTGA 57.932 37.500 7.61 0.00 41.34 4.26
1757 1815 6.678878 ACGTATGTATTCATCGTAAGCTGAT 58.321 36.000 7.61 0.00 42.74 2.90
1758 1816 7.145985 ACGTATGTATTCATCGTAAGCTGATT 58.854 34.615 7.61 0.00 42.74 2.57
1759 1817 7.652105 ACGTATGTATTCATCGTAAGCTGATTT 59.348 33.333 7.61 0.00 42.74 2.17
1760 1818 8.156553 CGTATGTATTCATCGTAAGCTGATTTC 58.843 37.037 0.00 0.00 42.74 2.17
1761 1819 9.197694 GTATGTATTCATCGTAAGCTGATTTCT 57.802 33.333 0.00 0.00 42.74 2.52
1762 1820 8.668510 ATGTATTCATCGTAAGCTGATTTCTT 57.331 30.769 0.00 0.00 42.74 2.52
1811 1869 2.315925 TCGATCTGGCCAAATCTGTC 57.684 50.000 16.96 3.50 0.00 3.51
1835 1893 5.985911 TCCAATGGACTTACCTACTTAAGC 58.014 41.667 0.00 0.00 39.86 3.09
1841 1899 5.116882 GGACTTACCTACTTAAGCATGGTG 58.883 45.833 18.92 9.81 33.02 4.17
1959 2017 8.287503 AGGAGTTGTGTATTTTTCGTTTATGTC 58.712 33.333 0.00 0.00 0.00 3.06
1960 2018 8.071368 GGAGTTGTGTATTTTTCGTTTATGTCA 58.929 33.333 0.00 0.00 0.00 3.58
1965 2023 8.779303 TGTGTATTTTTCGTTTATGTCATGTCT 58.221 29.630 0.00 0.00 0.00 3.41
1993 2051 2.868964 AGGGTTAGTGGCTATCTGGA 57.131 50.000 0.00 0.00 0.00 3.86
2001 2059 4.206244 AGTGGCTATCTGGAGGAGTTAT 57.794 45.455 0.00 0.00 0.00 1.89
2037 2095 2.668279 CGGCCTCAGGATTTGTTTTTCG 60.668 50.000 0.00 0.00 0.00 3.46
2069 2129 1.299392 CGATGATTCGGCTGCTCGA 60.299 57.895 8.74 8.74 41.74 4.04
2108 2168 0.886043 TATGGCTGCATGCATCGTCC 60.886 55.000 22.97 19.03 45.15 4.79
2122 2182 2.202987 GTCCTGATGCAGAGGCCG 60.203 66.667 9.34 0.00 40.13 6.13
2133 2193 1.079438 AGAGGCCGGGGATATCCTC 59.921 63.158 21.18 16.95 44.09 3.71
2177 2239 2.678336 CCTCTGTTCGGAAATAAGTGGC 59.322 50.000 0.00 0.00 0.00 5.01
2205 2267 5.044558 TCAAATTTGAACTAAAACCACGCC 58.955 37.500 18.45 0.00 33.55 5.68
2217 2279 2.279935 ACCACGCCAGTTATTTCCAA 57.720 45.000 0.00 0.00 0.00 3.53
2342 2432 3.723260 TGGAATGTATGATTCGCGCTAA 58.277 40.909 5.56 0.00 0.00 3.09
2437 2527 8.984891 TTACATTTGCTGAATCAATTTGTAGG 57.015 30.769 0.00 0.00 32.05 3.18
2537 2627 0.662619 TCAGTTTTGAGCCGTTGCAG 59.337 50.000 0.00 0.00 41.13 4.41
2551 2641 2.130821 TTGCAGGTGCGACCCCATTA 62.131 55.000 0.00 0.00 45.83 1.90
2552 2642 2.112815 GCAGGTGCGACCCCATTAC 61.113 63.158 2.18 0.00 39.75 1.89
2553 2643 1.298340 CAGGTGCGACCCCATTACA 59.702 57.895 2.18 0.00 39.75 2.41
2554 2644 0.744414 CAGGTGCGACCCCATTACAG 60.744 60.000 2.18 0.00 39.75 2.74
2555 2645 2.112815 GGTGCGACCCCATTACAGC 61.113 63.158 0.00 0.00 30.04 4.40
2556 2646 1.376683 GTGCGACCCCATTACAGCA 60.377 57.895 0.00 0.00 0.00 4.41
2557 2647 1.376683 TGCGACCCCATTACAGCAC 60.377 57.895 0.00 0.00 0.00 4.40
2558 2648 1.376683 GCGACCCCATTACAGCACA 60.377 57.895 0.00 0.00 0.00 4.57
2665 2772 7.569677 GTGTAACTTTTGTTTTACAGCACAA 57.430 32.000 0.00 0.00 43.32 3.33
2706 2813 6.187682 AGTTAATTGGAGAACATAACCCCTG 58.812 40.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.863454 CATTGATCGAGTGCACTAGGC 59.137 52.381 21.73 15.42 45.13 3.93
11 12 1.863454 GCATTGATCGAGTGCACTAGG 59.137 52.381 21.73 15.13 38.68 3.02
12 13 2.543641 TGCATTGATCGAGTGCACTAG 58.456 47.619 21.73 20.64 43.30 2.57
13 14 2.671130 TGCATTGATCGAGTGCACTA 57.329 45.000 21.73 5.36 43.30 2.74
14 15 3.538379 TGCATTGATCGAGTGCACT 57.462 47.368 21.88 21.88 43.30 4.40
17 18 2.610833 TCTCAATGCATTGATCGAGTGC 59.389 45.455 35.61 9.15 44.92 4.40
18 19 3.869832 ACTCTCAATGCATTGATCGAGTG 59.130 43.478 37.94 28.98 44.09 3.51
19 20 4.134379 ACTCTCAATGCATTGATCGAGT 57.866 40.909 35.67 35.67 44.92 4.18
20 21 4.785658 GCAACTCTCAATGCATTGATCGAG 60.786 45.833 34.78 34.78 44.92 4.04
21 22 3.064408 GCAACTCTCAATGCATTGATCGA 59.936 43.478 35.61 28.57 44.92 3.59
22 23 3.181504 TGCAACTCTCAATGCATTGATCG 60.182 43.478 35.61 29.51 46.87 3.69
23 24 4.365899 TGCAACTCTCAATGCATTGATC 57.634 40.909 35.61 21.68 46.87 2.92
30 31 0.166814 GGTCGTGCAACTCTCAATGC 59.833 55.000 0.00 0.00 42.86 3.56
31 32 0.798776 GGGTCGTGCAACTCTCAATG 59.201 55.000 0.00 0.00 31.75 2.82
32 33 0.396435 TGGGTCGTGCAACTCTCAAT 59.604 50.000 0.00 0.00 31.75 2.57
33 34 0.179234 TTGGGTCGTGCAACTCTCAA 59.821 50.000 0.00 0.00 31.75 3.02
34 35 0.179234 TTTGGGTCGTGCAACTCTCA 59.821 50.000 0.00 0.00 31.75 3.27
35 36 0.586802 GTTTGGGTCGTGCAACTCTC 59.413 55.000 0.00 0.00 31.75 3.20
36 37 0.818040 GGTTTGGGTCGTGCAACTCT 60.818 55.000 0.00 0.00 31.75 3.24
37 38 0.818040 AGGTTTGGGTCGTGCAACTC 60.818 55.000 0.00 0.00 31.75 3.01
38 39 0.818040 GAGGTTTGGGTCGTGCAACT 60.818 55.000 0.00 0.00 31.75 3.16
39 40 1.098712 TGAGGTTTGGGTCGTGCAAC 61.099 55.000 0.00 0.00 0.00 4.17
40 41 0.179004 ATGAGGTTTGGGTCGTGCAA 60.179 50.000 0.00 0.00 0.00 4.08
41 42 0.605319 GATGAGGTTTGGGTCGTGCA 60.605 55.000 0.00 0.00 0.00 4.57
42 43 0.321653 AGATGAGGTTTGGGTCGTGC 60.322 55.000 0.00 0.00 0.00 5.34
43 44 2.076863 GAAGATGAGGTTTGGGTCGTG 58.923 52.381 0.00 0.00 0.00 4.35
44 45 1.978580 AGAAGATGAGGTTTGGGTCGT 59.021 47.619 0.00 0.00 0.00 4.34
45 46 2.770164 AGAAGATGAGGTTTGGGTCG 57.230 50.000 0.00 0.00 0.00 4.79
46 47 4.553330 TGTAGAAGATGAGGTTTGGGTC 57.447 45.455 0.00 0.00 0.00 4.46
47 48 4.324563 CCATGTAGAAGATGAGGTTTGGGT 60.325 45.833 0.00 0.00 0.00 4.51
48 49 4.202441 CCATGTAGAAGATGAGGTTTGGG 58.798 47.826 0.00 0.00 0.00 4.12
49 50 4.848357 ACCATGTAGAAGATGAGGTTTGG 58.152 43.478 0.00 0.00 0.00 3.28
50 51 7.504403 AGATACCATGTAGAAGATGAGGTTTG 58.496 38.462 0.00 0.00 0.00 2.93
51 52 7.682787 AGATACCATGTAGAAGATGAGGTTT 57.317 36.000 0.00 0.00 0.00 3.27
52 53 8.964533 ATAGATACCATGTAGAAGATGAGGTT 57.035 34.615 0.00 0.00 0.00 3.50
53 54 7.338196 CGATAGATACCATGTAGAAGATGAGGT 59.662 40.741 0.00 0.00 39.76 3.85
54 55 7.680827 GCGATAGATACCATGTAGAAGATGAGG 60.681 44.444 0.00 0.00 39.76 3.86
55 56 7.148171 TGCGATAGATACCATGTAGAAGATGAG 60.148 40.741 0.00 0.00 39.76 2.90
56 57 6.659242 TGCGATAGATACCATGTAGAAGATGA 59.341 38.462 0.00 0.00 39.76 2.92
57 58 6.856895 TGCGATAGATACCATGTAGAAGATG 58.143 40.000 0.00 0.00 39.76 2.90
58 59 6.096141 CCTGCGATAGATACCATGTAGAAGAT 59.904 42.308 0.00 0.00 39.76 2.40
59 60 5.416013 CCTGCGATAGATACCATGTAGAAGA 59.584 44.000 0.00 0.00 39.76 2.87
60 61 5.645624 CCTGCGATAGATACCATGTAGAAG 58.354 45.833 0.00 0.00 39.76 2.85
61 62 4.082190 GCCTGCGATAGATACCATGTAGAA 60.082 45.833 0.00 0.00 39.76 2.10
62 63 3.444034 GCCTGCGATAGATACCATGTAGA 59.556 47.826 0.00 0.00 39.76 2.59
63 64 3.429547 GGCCTGCGATAGATACCATGTAG 60.430 52.174 0.00 0.00 39.76 2.74
64 65 2.496070 GGCCTGCGATAGATACCATGTA 59.504 50.000 0.00 0.00 39.76 2.29
65 66 1.276421 GGCCTGCGATAGATACCATGT 59.724 52.381 0.00 0.00 39.76 3.21
66 67 1.737029 CGGCCTGCGATAGATACCATG 60.737 57.143 0.00 0.00 39.76 3.66
67 68 0.532573 CGGCCTGCGATAGATACCAT 59.467 55.000 0.00 0.00 39.76 3.55
68 69 0.538746 TCGGCCTGCGATAGATACCA 60.539 55.000 0.00 0.00 39.76 3.25
69 70 0.818296 ATCGGCCTGCGATAGATACC 59.182 55.000 0.00 0.00 39.76 2.73
70 71 2.164624 AGAATCGGCCTGCGATAGATAC 59.835 50.000 0.00 0.00 39.76 2.24
71 72 2.164422 CAGAATCGGCCTGCGATAGATA 59.836 50.000 0.00 0.00 39.76 1.98
72 73 1.067283 CAGAATCGGCCTGCGATAGAT 60.067 52.381 0.00 0.00 39.76 1.98
73 74 0.315251 CAGAATCGGCCTGCGATAGA 59.685 55.000 0.00 0.00 39.76 1.98
74 75 0.315251 TCAGAATCGGCCTGCGATAG 59.685 55.000 0.00 0.00 0.00 2.08
75 76 0.032130 GTCAGAATCGGCCTGCGATA 59.968 55.000 0.00 0.00 0.00 2.92
76 77 1.227380 GTCAGAATCGGCCTGCGAT 60.227 57.895 0.00 0.00 0.00 4.58
77 78 2.184322 GTCAGAATCGGCCTGCGA 59.816 61.111 0.00 0.00 0.00 5.10
78 79 2.016393 TAGGTCAGAATCGGCCTGCG 62.016 60.000 0.00 0.00 32.90 5.18
79 80 0.249657 CTAGGTCAGAATCGGCCTGC 60.250 60.000 0.00 0.00 32.90 4.85
80 81 0.249657 GCTAGGTCAGAATCGGCCTG 60.250 60.000 0.00 0.00 32.90 4.85
81 82 1.403687 GGCTAGGTCAGAATCGGCCT 61.404 60.000 0.00 3.99 35.73 5.19
82 83 1.069935 GGCTAGGTCAGAATCGGCC 59.930 63.158 0.00 0.00 0.00 6.13
83 84 0.466124 AAGGCTAGGTCAGAATCGGC 59.534 55.000 0.00 0.00 0.00 5.54
84 85 2.288518 GCTAAGGCTAGGTCAGAATCGG 60.289 54.545 0.00 0.00 35.22 4.18
85 86 2.288518 GGCTAAGGCTAGGTCAGAATCG 60.289 54.545 0.00 0.00 38.73 3.34
86 87 2.288518 CGGCTAAGGCTAGGTCAGAATC 60.289 54.545 0.00 0.00 38.73 2.52
87 88 1.689273 CGGCTAAGGCTAGGTCAGAAT 59.311 52.381 0.00 0.00 38.73 2.40
88 89 1.112113 CGGCTAAGGCTAGGTCAGAA 58.888 55.000 0.00 0.00 38.73 3.02
89 90 1.392710 GCGGCTAAGGCTAGGTCAGA 61.393 60.000 0.00 0.00 38.73 3.27
90 91 1.068250 GCGGCTAAGGCTAGGTCAG 59.932 63.158 0.00 0.00 38.73 3.51
91 92 1.381327 AGCGGCTAAGGCTAGGTCA 60.381 57.895 0.00 0.00 39.39 4.02
92 93 1.068250 CAGCGGCTAAGGCTAGGTC 59.932 63.158 0.26 0.00 39.08 3.85
93 94 3.095347 GCAGCGGCTAAGGCTAGGT 62.095 63.158 0.26 0.00 39.08 3.08
94 95 2.280457 GCAGCGGCTAAGGCTAGG 60.280 66.667 0.26 0.00 39.08 3.02
95 96 2.280457 GGCAGCGGCTAAGGCTAG 60.280 66.667 9.17 0.00 39.08 3.42
96 97 4.221422 CGGCAGCGGCTAAGGCTA 62.221 66.667 9.17 0.00 39.08 3.93
178 179 3.066190 TAGCGACGGAGGTGGGTG 61.066 66.667 0.00 0.00 34.37 4.61
179 180 3.066814 GTAGCGACGGAGGTGGGT 61.067 66.667 0.00 0.00 36.54 4.51
180 181 3.834799 GGTAGCGACGGAGGTGGG 61.835 72.222 0.00 0.00 0.00 4.61
181 182 3.834799 GGGTAGCGACGGAGGTGG 61.835 72.222 0.00 0.00 0.00 4.61
182 183 4.189188 CGGGTAGCGACGGAGGTG 62.189 72.222 0.00 0.00 0.00 4.00
241 242 0.809241 CTAGGAAGAAGCTGCGGCAG 60.809 60.000 25.21 25.21 41.70 4.85
242 243 1.219124 CTAGGAAGAAGCTGCGGCA 59.781 57.895 21.93 1.29 41.70 5.69
243 244 2.176926 GCTAGGAAGAAGCTGCGGC 61.177 63.158 10.33 10.33 37.01 6.53
244 245 4.116878 GCTAGGAAGAAGCTGCGG 57.883 61.111 0.00 0.00 37.01 5.69
249 250 1.094650 GGCAGCAGCTAGGAAGAAGC 61.095 60.000 0.00 0.00 41.70 3.86
250 251 0.809241 CGGCAGCAGCTAGGAAGAAG 60.809 60.000 0.00 0.00 41.70 2.85
251 252 1.219124 CGGCAGCAGCTAGGAAGAA 59.781 57.895 0.00 0.00 41.70 2.52
252 253 2.895680 CGGCAGCAGCTAGGAAGA 59.104 61.111 0.00 0.00 41.70 2.87
253 254 2.894387 GCGGCAGCAGCTAGGAAG 60.894 66.667 10.66 0.00 44.35 3.46
272 273 4.814294 CAGGTAGCGTCACGGGGC 62.814 72.222 0.00 0.00 0.00 5.80
273 274 4.814294 GCAGGTAGCGTCACGGGG 62.814 72.222 0.00 0.00 0.00 5.73
282 283 3.124686 CGAGAGGGAGCAGGTAGC 58.875 66.667 0.00 0.00 46.19 3.58
283 284 1.040339 AAGCGAGAGGGAGCAGGTAG 61.040 60.000 0.00 0.00 35.48 3.18
284 285 1.000486 AAGCGAGAGGGAGCAGGTA 60.000 57.895 0.00 0.00 35.48 3.08
285 286 2.284258 AAGCGAGAGGGAGCAGGT 60.284 61.111 0.00 0.00 35.48 4.00
286 287 2.498726 GAAGCGAGAGGGAGCAGG 59.501 66.667 0.00 0.00 35.48 4.85
287 288 2.498726 GGAAGCGAGAGGGAGCAG 59.501 66.667 0.00 0.00 35.48 4.24
288 289 3.452786 CGGAAGCGAGAGGGAGCA 61.453 66.667 0.00 0.00 35.48 4.26
312 313 2.240500 CCATAGAACTCGCAGCGGC 61.241 63.158 16.42 0.00 0.00 6.53
313 314 1.592669 CCCATAGAACTCGCAGCGG 60.593 63.158 16.42 8.40 0.00 5.52
314 315 1.141881 ACCCATAGAACTCGCAGCG 59.858 57.895 9.06 9.06 0.00 5.18
315 316 0.175760 TCACCCATAGAACTCGCAGC 59.824 55.000 0.00 0.00 0.00 5.25
316 317 1.204704 TGTCACCCATAGAACTCGCAG 59.795 52.381 0.00 0.00 0.00 5.18
317 318 1.204704 CTGTCACCCATAGAACTCGCA 59.795 52.381 0.00 0.00 0.00 5.10
318 319 1.927895 CTGTCACCCATAGAACTCGC 58.072 55.000 0.00 0.00 0.00 5.03
319 320 1.204704 TGCTGTCACCCATAGAACTCG 59.795 52.381 0.00 0.00 0.00 4.18
320 321 2.898705 CTGCTGTCACCCATAGAACTC 58.101 52.381 0.00 0.00 0.00 3.01
321 322 1.065854 GCTGCTGTCACCCATAGAACT 60.066 52.381 0.00 0.00 0.00 3.01
322 323 1.065854 AGCTGCTGTCACCCATAGAAC 60.066 52.381 0.00 0.00 0.00 3.01
323 324 1.279496 AGCTGCTGTCACCCATAGAA 58.721 50.000 0.00 0.00 0.00 2.10
324 325 1.065926 CAAGCTGCTGTCACCCATAGA 60.066 52.381 1.35 0.00 0.00 1.98
325 326 1.065926 TCAAGCTGCTGTCACCCATAG 60.066 52.381 1.35 0.00 0.00 2.23
326 327 0.983467 TCAAGCTGCTGTCACCCATA 59.017 50.000 1.35 0.00 0.00 2.74
327 328 0.322277 CTCAAGCTGCTGTCACCCAT 60.322 55.000 1.35 0.00 0.00 4.00
328 329 1.071987 CTCAAGCTGCTGTCACCCA 59.928 57.895 1.35 0.00 0.00 4.51
329 330 0.952984 GACTCAAGCTGCTGTCACCC 60.953 60.000 1.35 0.00 0.00 4.61
330 331 1.287730 CGACTCAAGCTGCTGTCACC 61.288 60.000 15.95 1.68 0.00 4.02
331 332 0.598680 ACGACTCAAGCTGCTGTCAC 60.599 55.000 15.95 2.81 0.00 3.67
332 333 0.319040 GACGACTCAAGCTGCTGTCA 60.319 55.000 15.95 0.00 0.00 3.58
333 334 1.011451 GGACGACTCAAGCTGCTGTC 61.011 60.000 1.35 5.70 0.00 3.51
334 335 1.005630 GGACGACTCAAGCTGCTGT 60.006 57.895 1.35 0.00 0.00 4.40
335 336 0.390866 ATGGACGACTCAAGCTGCTG 60.391 55.000 1.35 0.00 0.00 4.41
336 337 0.322975 AATGGACGACTCAAGCTGCT 59.677 50.000 0.00 0.00 0.00 4.24
337 338 0.445436 CAATGGACGACTCAAGCTGC 59.555 55.000 0.00 0.00 0.00 5.25
338 339 1.728971 GTCAATGGACGACTCAAGCTG 59.271 52.381 0.00 0.00 33.68 4.24
339 340 2.086054 GTCAATGGACGACTCAAGCT 57.914 50.000 0.00 0.00 33.68 3.74
349 350 3.236816 CATGCAAAAGTCGTCAATGGAC 58.763 45.455 0.00 0.00 40.77 4.02
350 351 2.351641 GCATGCAAAAGTCGTCAATGGA 60.352 45.455 14.21 0.00 0.00 3.41
351 352 1.987770 GCATGCAAAAGTCGTCAATGG 59.012 47.619 14.21 0.00 0.00 3.16
352 353 1.645265 CGCATGCAAAAGTCGTCAATG 59.355 47.619 19.57 0.00 0.00 2.82
353 354 1.967762 CGCATGCAAAAGTCGTCAAT 58.032 45.000 19.57 0.00 0.00 2.57
354 355 0.660005 GCGCATGCAAAAGTCGTCAA 60.660 50.000 19.57 0.00 42.15 3.18
355 356 1.082169 GCGCATGCAAAAGTCGTCA 60.082 52.632 19.57 0.00 42.15 4.35
356 357 1.797537 GGCGCATGCAAAAGTCGTC 60.798 57.895 19.57 0.00 45.35 4.20
357 358 2.255252 GGCGCATGCAAAAGTCGT 59.745 55.556 19.57 0.00 45.35 4.34
358 359 2.504681 GGGCGCATGCAAAAGTCG 60.505 61.111 19.57 0.00 45.35 4.18
359 360 1.153958 GAGGGCGCATGCAAAAGTC 60.154 57.895 19.57 1.97 45.35 3.01
360 361 1.462731 TTGAGGGCGCATGCAAAAGT 61.463 50.000 19.57 0.00 45.35 2.66
361 362 0.734942 CTTGAGGGCGCATGCAAAAG 60.735 55.000 19.57 7.46 45.35 2.27
362 363 1.177895 TCTTGAGGGCGCATGCAAAA 61.178 50.000 19.57 1.30 45.35 2.44
363 364 1.177895 TTCTTGAGGGCGCATGCAAA 61.178 50.000 19.57 0.94 45.35 3.68
364 365 1.588824 CTTCTTGAGGGCGCATGCAA 61.589 55.000 19.57 8.81 45.35 4.08
365 366 2.033911 TTCTTGAGGGCGCATGCA 59.966 55.556 19.57 0.00 45.35 3.96
366 367 2.796651 CTTCTTGAGGGCGCATGC 59.203 61.111 10.83 7.91 41.71 4.06
367 368 1.310933 AAGCTTCTTGAGGGCGCATG 61.311 55.000 10.83 0.00 0.00 4.06
368 369 1.001641 AAGCTTCTTGAGGGCGCAT 60.002 52.632 10.83 0.00 0.00 4.73
369 370 1.968017 CAAGCTTCTTGAGGGCGCA 60.968 57.895 10.83 0.00 0.00 6.09
370 371 2.873288 CAAGCTTCTTGAGGGCGC 59.127 61.111 0.00 0.00 0.00 6.53
371 372 2.694760 GGCAAGCTTCTTGAGGGCG 61.695 63.158 10.44 0.00 0.00 6.13
372 373 1.181098 TTGGCAAGCTTCTTGAGGGC 61.181 55.000 10.44 0.00 0.00 5.19
373 374 0.600057 GTTGGCAAGCTTCTTGAGGG 59.400 55.000 0.00 0.00 0.00 4.30
374 375 0.239347 CGTTGGCAAGCTTCTTGAGG 59.761 55.000 0.00 0.00 0.00 3.86
375 376 1.196354 CTCGTTGGCAAGCTTCTTGAG 59.804 52.381 0.00 0.00 0.00 3.02
376 377 1.229428 CTCGTTGGCAAGCTTCTTGA 58.771 50.000 0.00 0.00 0.00 3.02
377 378 0.386478 GCTCGTTGGCAAGCTTCTTG 60.386 55.000 0.00 2.40 35.60 3.02
378 379 0.536006 AGCTCGTTGGCAAGCTTCTT 60.536 50.000 6.35 0.00 46.49 2.52
379 380 1.072159 AGCTCGTTGGCAAGCTTCT 59.928 52.632 6.35 0.00 46.49 2.85
380 381 3.660621 AGCTCGTTGGCAAGCTTC 58.339 55.556 6.35 0.00 46.49 3.86
383 384 3.793144 CGGAGCTCGTTGGCAAGC 61.793 66.667 7.83 0.00 38.84 4.01
396 397 3.249091 CTCATAGGAAATGATCGCGGAG 58.751 50.000 6.13 0.00 0.00 4.63
397 398 2.610479 GCTCATAGGAAATGATCGCGGA 60.610 50.000 6.13 0.00 0.00 5.54
398 399 1.728971 GCTCATAGGAAATGATCGCGG 59.271 52.381 6.13 0.00 0.00 6.46
399 400 2.156504 GTGCTCATAGGAAATGATCGCG 59.843 50.000 0.00 0.00 0.00 5.87
400 401 3.133691 TGTGCTCATAGGAAATGATCGC 58.866 45.455 0.00 0.00 0.00 4.58
401 402 4.992951 TCATGTGCTCATAGGAAATGATCG 59.007 41.667 0.04 0.00 32.47 3.69
402 403 5.996513 AGTCATGTGCTCATAGGAAATGATC 59.003 40.000 4.82 0.00 32.47 2.92
403 404 5.763698 CAGTCATGTGCTCATAGGAAATGAT 59.236 40.000 4.82 0.00 32.47 2.45
404 405 5.121105 CAGTCATGTGCTCATAGGAAATGA 58.879 41.667 0.04 0.00 32.47 2.57
405 406 4.261072 GCAGTCATGTGCTCATAGGAAATG 60.261 45.833 0.04 0.88 40.54 2.32
406 407 3.881688 GCAGTCATGTGCTCATAGGAAAT 59.118 43.478 0.04 0.00 40.54 2.17
407 408 3.273434 GCAGTCATGTGCTCATAGGAAA 58.727 45.455 0.04 0.00 40.54 3.13
408 409 2.236893 TGCAGTCATGTGCTCATAGGAA 59.763 45.455 9.44 0.00 44.32 3.36
409 410 1.832998 TGCAGTCATGTGCTCATAGGA 59.167 47.619 9.44 0.00 44.32 2.94
410 411 2.210961 CTGCAGTCATGTGCTCATAGG 58.789 52.381 5.25 0.00 44.32 2.57
411 412 2.210961 CCTGCAGTCATGTGCTCATAG 58.789 52.381 13.81 0.00 44.32 2.23
412 413 1.744798 GCCTGCAGTCATGTGCTCATA 60.745 52.381 13.81 0.00 44.32 2.15
413 414 1.030488 GCCTGCAGTCATGTGCTCAT 61.030 55.000 13.81 0.00 44.32 2.90
414 415 1.673337 GCCTGCAGTCATGTGCTCA 60.673 57.895 13.81 0.00 44.32 4.26
415 416 2.404995 GGCCTGCAGTCATGTGCTC 61.405 63.158 13.81 0.00 44.32 4.26
416 417 2.360852 GGCCTGCAGTCATGTGCT 60.361 61.111 13.81 0.00 44.32 4.40
417 418 3.446570 GGGCCTGCAGTCATGTGC 61.447 66.667 13.81 7.42 44.27 4.57
418 419 0.896940 AAAGGGCCTGCAGTCATGTG 60.897 55.000 6.92 0.00 0.00 3.21
419 420 0.178953 AAAAGGGCCTGCAGTCATGT 60.179 50.000 6.92 0.00 0.00 3.21
420 421 0.971386 AAAAAGGGCCTGCAGTCATG 59.029 50.000 6.92 0.00 0.00 3.07
421 422 1.203100 AGAAAAAGGGCCTGCAGTCAT 60.203 47.619 6.92 0.00 0.00 3.06
422 423 0.185901 AGAAAAAGGGCCTGCAGTCA 59.814 50.000 6.92 0.00 0.00 3.41
423 424 2.200373 TAGAAAAAGGGCCTGCAGTC 57.800 50.000 6.92 0.00 0.00 3.51
424 425 2.907458 ATAGAAAAAGGGCCTGCAGT 57.093 45.000 6.92 0.00 0.00 4.40
425 426 4.498241 GAAAATAGAAAAAGGGCCTGCAG 58.502 43.478 6.92 6.78 0.00 4.41
426 427 3.056891 CGAAAATAGAAAAAGGGCCTGCA 60.057 43.478 6.92 0.00 0.00 4.41
427 428 3.056821 ACGAAAATAGAAAAAGGGCCTGC 60.057 43.478 6.92 0.00 0.00 4.85
428 429 4.783764 ACGAAAATAGAAAAAGGGCCTG 57.216 40.909 6.92 0.00 0.00 4.85
429 430 6.661805 TGAATACGAAAATAGAAAAAGGGCCT 59.338 34.615 0.00 0.00 0.00 5.19
430 431 6.750501 GTGAATACGAAAATAGAAAAAGGGCC 59.249 38.462 0.00 0.00 0.00 5.80
431 432 7.484959 CAGTGAATACGAAAATAGAAAAAGGGC 59.515 37.037 0.00 0.00 0.00 5.19
432 433 8.726988 TCAGTGAATACGAAAATAGAAAAAGGG 58.273 33.333 0.00 0.00 0.00 3.95
437 438 9.967245 CGATTTCAGTGAATACGAAAATAGAAA 57.033 29.630 20.10 0.00 35.04 2.52
438 439 8.600625 CCGATTTCAGTGAATACGAAAATAGAA 58.399 33.333 23.90 1.71 35.04 2.10
439 440 7.762615 ACCGATTTCAGTGAATACGAAAATAGA 59.237 33.333 23.90 1.88 35.04 1.98
440 441 7.906160 ACCGATTTCAGTGAATACGAAAATAG 58.094 34.615 23.90 13.66 35.04 1.73
441 442 7.762615 AGACCGATTTCAGTGAATACGAAAATA 59.237 33.333 23.90 2.95 35.04 1.40
442 443 6.594159 AGACCGATTTCAGTGAATACGAAAAT 59.406 34.615 23.90 8.27 35.04 1.82
443 444 5.929992 AGACCGATTTCAGTGAATACGAAAA 59.070 36.000 23.90 4.20 35.04 2.29
444 445 5.475719 AGACCGATTTCAGTGAATACGAAA 58.524 37.500 23.90 4.82 35.47 3.46
445 446 5.068234 AGACCGATTTCAGTGAATACGAA 57.932 39.130 23.90 5.45 0.00 3.85
446 447 4.669318 GAGACCGATTTCAGTGAATACGA 58.331 43.478 23.90 5.78 0.00 3.43
447 448 3.482472 CGAGACCGATTTCAGTGAATACG 59.518 47.826 18.71 18.71 38.22 3.06
448 449 3.243177 GCGAGACCGATTTCAGTGAATAC 59.757 47.826 6.36 3.30 38.22 1.89
449 450 3.444916 GCGAGACCGATTTCAGTGAATA 58.555 45.455 6.36 0.00 38.22 1.75
450 451 2.271800 GCGAGACCGATTTCAGTGAAT 58.728 47.619 6.36 0.00 38.22 2.57
451 452 1.671850 GGCGAGACCGATTTCAGTGAA 60.672 52.381 0.08 0.08 38.22 3.18
452 453 0.108804 GGCGAGACCGATTTCAGTGA 60.109 55.000 0.00 0.00 38.22 3.41
453 454 2.373938 GGCGAGACCGATTTCAGTG 58.626 57.895 0.00 0.00 38.22 3.66
454 455 4.913126 GGCGAGACCGATTTCAGT 57.087 55.556 0.00 0.00 38.22 3.41
463 464 2.553172 AGTGATATAGTTCGGCGAGACC 59.447 50.000 10.46 2.20 0.00 3.85
464 465 3.250280 TCAGTGATATAGTTCGGCGAGAC 59.750 47.826 10.46 11.58 0.00 3.36
465 466 3.473625 TCAGTGATATAGTTCGGCGAGA 58.526 45.455 10.46 0.00 0.00 4.04
466 467 3.898517 TCAGTGATATAGTTCGGCGAG 57.101 47.619 10.46 0.00 0.00 5.03
467 468 4.642445 TTTCAGTGATATAGTTCGGCGA 57.358 40.909 4.99 4.99 0.00 5.54
468 469 4.088638 CGATTTCAGTGATATAGTTCGGCG 59.911 45.833 0.00 0.00 0.00 6.46
469 470 4.982916 ACGATTTCAGTGATATAGTTCGGC 59.017 41.667 4.00 0.00 0.00 5.54
470 471 6.581542 GGTACGATTTCAGTGATATAGTTCGG 59.418 42.308 12.93 0.00 0.00 4.30
471 472 7.113124 GTGGTACGATTTCAGTGATATAGTTCG 59.887 40.741 12.93 8.23 0.00 3.95
472 473 8.136165 AGTGGTACGATTTCAGTGATATAGTTC 58.864 37.037 12.93 8.95 0.00 3.01
473 474 7.921214 CAGTGGTACGATTTCAGTGATATAGTT 59.079 37.037 12.93 1.29 34.70 2.24
474 475 7.284716 TCAGTGGTACGATTTCAGTGATATAGT 59.715 37.037 12.46 12.46 36.35 2.12
475 476 7.649057 TCAGTGGTACGATTTCAGTGATATAG 58.351 38.462 0.00 0.00 36.35 1.31
476 477 7.576861 TCAGTGGTACGATTTCAGTGATATA 57.423 36.000 0.00 0.00 36.35 0.86
477 478 6.465439 TCAGTGGTACGATTTCAGTGATAT 57.535 37.500 0.00 0.00 36.35 1.63
478 479 5.907866 TCAGTGGTACGATTTCAGTGATA 57.092 39.130 0.00 0.00 36.35 2.15
479 480 4.801330 TCAGTGGTACGATTTCAGTGAT 57.199 40.909 0.00 0.00 36.35 3.06
480 481 4.594123 TTCAGTGGTACGATTTCAGTGA 57.406 40.909 0.00 3.34 38.58 3.41
481 482 5.408299 TGAATTCAGTGGTACGATTTCAGTG 59.592 40.000 3.38 0.00 31.44 3.66
482 483 5.547465 TGAATTCAGTGGTACGATTTCAGT 58.453 37.500 3.38 0.00 31.44 3.41
483 484 6.668541 ATGAATTCAGTGGTACGATTTCAG 57.331 37.500 14.54 0.00 35.90 3.02
484 485 8.731275 AATATGAATTCAGTGGTACGATTTCA 57.269 30.769 14.54 7.69 36.50 2.69
487 488 8.335356 CGAAAATATGAATTCAGTGGTACGATT 58.665 33.333 14.54 0.00 0.00 3.34
488 489 7.494625 ACGAAAATATGAATTCAGTGGTACGAT 59.505 33.333 21.85 5.18 0.00 3.73
489 490 6.814644 ACGAAAATATGAATTCAGTGGTACGA 59.185 34.615 21.85 0.00 0.00 3.43
490 491 7.000575 ACGAAAATATGAATTCAGTGGTACG 57.999 36.000 14.54 16.01 0.00 3.67
491 492 9.864034 CATACGAAAATATGAATTCAGTGGTAC 57.136 33.333 14.54 3.76 34.94 3.34
492 493 9.825109 TCATACGAAAATATGAATTCAGTGGTA 57.175 29.630 14.54 8.92 38.37 3.25
493 494 8.731275 TCATACGAAAATATGAATTCAGTGGT 57.269 30.769 14.54 7.17 38.37 4.16
516 517 8.623903 GGAGCAAACATTATATCACTGAATTCA 58.376 33.333 8.12 8.12 0.00 2.57
517 518 8.078596 GGGAGCAAACATTATATCACTGAATTC 58.921 37.037 0.00 0.00 0.00 2.17
518 519 7.781693 AGGGAGCAAACATTATATCACTGAATT 59.218 33.333 0.00 0.00 0.00 2.17
519 520 7.293073 AGGGAGCAAACATTATATCACTGAAT 58.707 34.615 0.00 0.00 0.00 2.57
520 521 6.662755 AGGGAGCAAACATTATATCACTGAA 58.337 36.000 0.00 0.00 0.00 3.02
521 522 6.252599 AGGGAGCAAACATTATATCACTGA 57.747 37.500 0.00 0.00 0.00 3.41
522 523 5.471456 GGAGGGAGCAAACATTATATCACTG 59.529 44.000 0.00 0.00 0.00 3.66
523 524 5.625150 GGAGGGAGCAAACATTATATCACT 58.375 41.667 0.00 0.00 0.00 3.41
524 525 4.452455 CGGAGGGAGCAAACATTATATCAC 59.548 45.833 0.00 0.00 0.00 3.06
525 526 4.641396 CGGAGGGAGCAAACATTATATCA 58.359 43.478 0.00 0.00 0.00 2.15
526 527 3.437049 GCGGAGGGAGCAAACATTATATC 59.563 47.826 0.00 0.00 34.19 1.63
527 528 3.181445 TGCGGAGGGAGCAAACATTATAT 60.181 43.478 0.00 0.00 42.18 0.86
528 529 2.171659 TGCGGAGGGAGCAAACATTATA 59.828 45.455 0.00 0.00 42.18 0.98
529 530 1.064758 TGCGGAGGGAGCAAACATTAT 60.065 47.619 0.00 0.00 42.18 1.28
530 531 0.326595 TGCGGAGGGAGCAAACATTA 59.673 50.000 0.00 0.00 42.18 1.90
531 532 0.962356 CTGCGGAGGGAGCAAACATT 60.962 55.000 0.00 0.00 44.67 2.71
532 533 1.377725 CTGCGGAGGGAGCAAACAT 60.378 57.895 0.00 0.00 44.67 2.71
533 534 2.032528 CTGCGGAGGGAGCAAACA 59.967 61.111 0.00 0.00 44.67 2.83
534 535 1.600916 AACTGCGGAGGGAGCAAAC 60.601 57.895 9.36 0.00 44.67 2.93
535 536 1.600636 CAACTGCGGAGGGAGCAAA 60.601 57.895 9.36 0.00 44.67 3.68
536 537 2.032528 CAACTGCGGAGGGAGCAA 59.967 61.111 9.36 0.00 44.67 3.91
537 538 4.020617 CCAACTGCGGAGGGAGCA 62.021 66.667 9.36 0.00 42.99 4.26
538 539 3.959991 GACCAACTGCGGAGGGAGC 62.960 68.421 9.36 0.00 34.49 4.70
539 540 2.232298 GAGACCAACTGCGGAGGGAG 62.232 65.000 9.36 0.00 37.67 4.30
540 541 2.203788 AGACCAACTGCGGAGGGA 60.204 61.111 9.36 0.00 0.00 4.20
541 542 2.266055 GAGACCAACTGCGGAGGG 59.734 66.667 9.36 2.96 0.00 4.30
542 543 2.125912 CGAGACCAACTGCGGAGG 60.126 66.667 9.36 3.02 0.00 4.30
543 544 1.006102 AACGAGACCAACTGCGGAG 60.006 57.895 0.85 0.85 0.00 4.63
544 545 1.300620 CAACGAGACCAACTGCGGA 60.301 57.895 0.00 0.00 0.00 5.54
545 546 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
546 547 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
547 548 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
548 549 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
549 550 6.293027 CGTAAATTTAACCAACGAGACCAACT 60.293 38.462 4.77 0.00 35.66 3.16
550 551 5.847515 CGTAAATTTAACCAACGAGACCAAC 59.152 40.000 4.77 0.00 35.66 3.77
551 552 5.049543 CCGTAAATTTAACCAACGAGACCAA 60.050 40.000 11.09 0.00 35.66 3.67
552 553 4.451774 CCGTAAATTTAACCAACGAGACCA 59.548 41.667 11.09 0.00 35.66 4.02
553 554 4.452114 ACCGTAAATTTAACCAACGAGACC 59.548 41.667 11.09 0.00 35.66 3.85
554 555 5.596268 ACCGTAAATTTAACCAACGAGAC 57.404 39.130 11.09 0.00 35.66 3.36
555 556 7.721286 TTAACCGTAAATTTAACCAACGAGA 57.279 32.000 11.09 0.00 35.66 4.04
556 557 8.953507 ATTTAACCGTAAATTTAACCAACGAG 57.046 30.769 11.09 5.19 36.69 4.18
568 569 6.038936 CCCGAGATCCAAATTTAACCGTAAAT 59.961 38.462 0.00 0.00 40.88 1.40
569 570 5.354792 CCCGAGATCCAAATTTAACCGTAAA 59.645 40.000 0.00 0.00 33.76 2.01
570 571 4.877251 CCCGAGATCCAAATTTAACCGTAA 59.123 41.667 0.00 0.00 0.00 3.18
571 572 4.161942 TCCCGAGATCCAAATTTAACCGTA 59.838 41.667 0.00 0.00 0.00 4.02
572 573 3.054948 TCCCGAGATCCAAATTTAACCGT 60.055 43.478 0.00 0.00 0.00 4.83
573 574 3.537580 TCCCGAGATCCAAATTTAACCG 58.462 45.455 0.00 0.00 0.00 4.44
574 575 4.202020 GCTTCCCGAGATCCAAATTTAACC 60.202 45.833 0.00 0.00 0.00 2.85
575 576 4.495844 CGCTTCCCGAGATCCAAATTTAAC 60.496 45.833 0.00 0.00 40.02 2.01
576 577 3.625764 CGCTTCCCGAGATCCAAATTTAA 59.374 43.478 0.00 0.00 40.02 1.52
577 578 3.202906 CGCTTCCCGAGATCCAAATTTA 58.797 45.455 0.00 0.00 40.02 1.40
578 579 2.017049 CGCTTCCCGAGATCCAAATTT 58.983 47.619 0.00 0.00 40.02 1.82
579 580 1.668419 CGCTTCCCGAGATCCAAATT 58.332 50.000 0.00 0.00 40.02 1.82
580 581 0.815615 GCGCTTCCCGAGATCCAAAT 60.816 55.000 0.00 0.00 40.02 2.32
581 582 1.449601 GCGCTTCCCGAGATCCAAA 60.450 57.895 0.00 0.00 40.02 3.28
582 583 2.186903 GCGCTTCCCGAGATCCAA 59.813 61.111 0.00 0.00 40.02 3.53
583 584 4.207281 CGCGCTTCCCGAGATCCA 62.207 66.667 5.56 0.00 39.21 3.41
584 585 4.951963 CCGCGCTTCCCGAGATCC 62.952 72.222 5.56 0.00 39.21 3.36
585 586 4.951963 CCCGCGCTTCCCGAGATC 62.952 72.222 5.56 0.00 39.21 2.75
598 599 4.016706 ACAGTGTAGTGCCCCCGC 62.017 66.667 0.00 0.00 0.00 6.13
599 600 2.047274 CACAGTGTAGTGCCCCCG 60.047 66.667 0.00 0.00 32.04 5.73
600 601 0.109723 TTTCACAGTGTAGTGCCCCC 59.890 55.000 0.00 0.00 39.35 5.40
601 602 1.812571 CATTTCACAGTGTAGTGCCCC 59.187 52.381 0.00 0.00 39.35 5.80
602 603 1.812571 CCATTTCACAGTGTAGTGCCC 59.187 52.381 0.00 0.00 39.35 5.36
603 604 2.744202 CTCCATTTCACAGTGTAGTGCC 59.256 50.000 0.00 0.00 39.35 5.01
604 605 2.744202 CCTCCATTTCACAGTGTAGTGC 59.256 50.000 0.00 0.00 39.35 4.40
605 606 3.007940 TCCCTCCATTTCACAGTGTAGTG 59.992 47.826 0.00 0.00 40.85 2.74
606 607 3.248024 TCCCTCCATTTCACAGTGTAGT 58.752 45.455 0.00 0.00 0.00 2.73
607 608 3.261897 ACTCCCTCCATTTCACAGTGTAG 59.738 47.826 0.00 0.00 0.00 2.74
608 609 3.248024 ACTCCCTCCATTTCACAGTGTA 58.752 45.455 0.00 0.00 0.00 2.90
609 610 2.057922 ACTCCCTCCATTTCACAGTGT 58.942 47.619 0.00 0.00 0.00 3.55
610 611 2.867109 ACTCCCTCCATTTCACAGTG 57.133 50.000 0.00 0.00 0.00 3.66
611 612 6.831664 ATAATACTCCCTCCATTTCACAGT 57.168 37.500 0.00 0.00 0.00 3.55
612 613 6.868864 CGTATAATACTCCCTCCATTTCACAG 59.131 42.308 0.00 0.00 0.00 3.66
613 614 6.325545 ACGTATAATACTCCCTCCATTTCACA 59.674 38.462 0.00 0.00 0.00 3.58
614 615 6.756221 ACGTATAATACTCCCTCCATTTCAC 58.244 40.000 0.00 0.00 0.00 3.18
615 616 6.551975 TGACGTATAATACTCCCTCCATTTCA 59.448 38.462 0.00 0.00 0.00 2.69
616 617 6.867293 GTGACGTATAATACTCCCTCCATTTC 59.133 42.308 0.00 0.00 0.00 2.17
617 618 6.553852 AGTGACGTATAATACTCCCTCCATTT 59.446 38.462 0.00 0.00 0.00 2.32
618 619 6.075984 AGTGACGTATAATACTCCCTCCATT 58.924 40.000 0.00 0.00 0.00 3.16
619 620 5.642165 AGTGACGTATAATACTCCCTCCAT 58.358 41.667 0.00 0.00 0.00 3.41
620 621 5.057843 AGTGACGTATAATACTCCCTCCA 57.942 43.478 0.00 0.00 0.00 3.86
621 622 7.392673 TGAATAGTGACGTATAATACTCCCTCC 59.607 40.741 0.00 0.00 0.00 4.30
622 623 8.235905 GTGAATAGTGACGTATAATACTCCCTC 58.764 40.741 0.00 0.00 0.00 4.30
623 624 7.722728 TGTGAATAGTGACGTATAATACTCCCT 59.277 37.037 0.00 0.00 0.00 4.20
624 625 7.806960 GTGTGAATAGTGACGTATAATACTCCC 59.193 40.741 0.00 0.00 0.00 4.30
625 626 8.566260 AGTGTGAATAGTGACGTATAATACTCC 58.434 37.037 0.00 0.00 0.00 3.85
637 638 6.588756 TCGGTCAAAATAGTGTGAATAGTGAC 59.411 38.462 0.00 0.00 33.70 3.67
673 674 8.980143 AAATCTCGTTGACTTCTTTTCAAAAA 57.020 26.923 0.00 0.00 34.78 1.94
674 675 8.980143 AAAATCTCGTTGACTTCTTTTCAAAA 57.020 26.923 0.00 0.00 34.78 2.44
675 676 8.980143 AAAAATCTCGTTGACTTCTTTTCAAA 57.020 26.923 0.00 0.00 34.78 2.69
724 726 9.747898 TGAAATAAACTTGACCTACCATTGTAT 57.252 29.630 0.00 0.00 0.00 2.29
801 803 6.847567 TGGGTTTAGTGTACATCCTATATGGT 59.152 38.462 0.00 0.00 37.07 3.55
805 807 9.305555 GTCTATGGGTTTAGTGTACATCCTATA 57.694 37.037 0.00 4.77 0.00 1.31
806 808 7.234988 GGTCTATGGGTTTAGTGTACATCCTAT 59.765 40.741 0.00 3.89 0.00 2.57
807 809 6.552350 GGTCTATGGGTTTAGTGTACATCCTA 59.448 42.308 0.00 0.00 0.00 2.94
808 810 5.365895 GGTCTATGGGTTTAGTGTACATCCT 59.634 44.000 0.00 0.00 0.00 3.24
809 811 5.129815 TGGTCTATGGGTTTAGTGTACATCC 59.870 44.000 0.00 0.00 0.00 3.51
810 812 6.229936 TGGTCTATGGGTTTAGTGTACATC 57.770 41.667 0.00 0.00 0.00 3.06
812 814 6.436738 TTTGGTCTATGGGTTTAGTGTACA 57.563 37.500 0.00 0.00 0.00 2.90
813 815 7.748691 TTTTTGGTCTATGGGTTTAGTGTAC 57.251 36.000 0.00 0.00 0.00 2.90
814 816 8.943594 AATTTTTGGTCTATGGGTTTAGTGTA 57.056 30.769 0.00 0.00 0.00 2.90
815 817 7.039293 GGAATTTTTGGTCTATGGGTTTAGTGT 60.039 37.037 0.00 0.00 0.00 3.55
816 818 7.320399 GGAATTTTTGGTCTATGGGTTTAGTG 58.680 38.462 0.00 0.00 0.00 2.74
817 819 6.439375 GGGAATTTTTGGTCTATGGGTTTAGT 59.561 38.462 0.00 0.00 0.00 2.24
818 820 6.127168 GGGGAATTTTTGGTCTATGGGTTTAG 60.127 42.308 0.00 0.00 0.00 1.85
819 821 5.722441 GGGGAATTTTTGGTCTATGGGTTTA 59.278 40.000 0.00 0.00 0.00 2.01
820 822 4.534500 GGGGAATTTTTGGTCTATGGGTTT 59.466 41.667 0.00 0.00 0.00 3.27
821 823 4.101114 GGGGAATTTTTGGTCTATGGGTT 58.899 43.478 0.00 0.00 0.00 4.11
861 863 3.089210 CGACGGTCACACACGACG 61.089 66.667 9.10 0.00 40.99 5.12
862 864 2.007641 GTCGACGGTCACACACGAC 61.008 63.158 9.10 5.56 44.19 4.34
1303 1310 1.074405 TGATGCCCTTCTTTCACTGCT 59.926 47.619 0.00 0.00 0.00 4.24
1475 1482 0.168568 GAGGAGGTTGACGAGTCGAC 59.831 60.000 21.50 14.39 42.03 4.20
1492 1505 2.105128 GATGGCGGTGAGGACGAG 59.895 66.667 0.00 0.00 0.00 4.18
1495 1508 2.125106 GGTGATGGCGGTGAGGAC 60.125 66.667 0.00 0.00 0.00 3.85
1594 1607 2.678934 AAGCTGCTCCCGTCCGTA 60.679 61.111 1.00 0.00 0.00 4.02
1654 1673 5.587289 TCACTAACAACCATTGCAAGTTTC 58.413 37.500 4.94 0.00 29.54 2.78
1788 1846 2.353889 CAGATTTGGCCAGATCGAACTG 59.646 50.000 25.91 16.91 37.61 3.16
1811 1869 6.049790 GCTTAAGTAGGTAAGTCCATTGGAG 58.950 44.000 5.39 0.00 39.02 3.86
1835 1893 8.839343 TGTACTATTCAATCTTAATGCACCATG 58.161 33.333 0.00 0.00 0.00 3.66
1848 1906 9.395707 ACTCGATACGAATTGTACTATTCAATC 57.604 33.333 23.62 21.80 35.44 2.67
1942 2000 9.607285 ACAAGACATGACATAAACGAAAAATAC 57.393 29.630 0.00 0.00 0.00 1.89
1959 2017 6.931281 CCACTAACCCTATGATACAAGACATG 59.069 42.308 0.00 0.00 0.00 3.21
1960 2018 6.464465 GCCACTAACCCTATGATACAAGACAT 60.464 42.308 0.00 0.00 0.00 3.06
1965 2023 7.016914 AGATAGCCACTAACCCTATGATACAA 58.983 38.462 0.00 0.00 0.00 2.41
1969 2027 4.780021 CCAGATAGCCACTAACCCTATGAT 59.220 45.833 0.00 0.00 0.00 2.45
1993 2051 5.008415 CGTATACCTCACGACAATAACTCCT 59.992 44.000 0.00 0.00 41.91 3.69
2001 2059 0.457035 GGCCGTATACCTCACGACAA 59.543 55.000 0.00 0.00 41.91 3.18
2059 2119 1.512734 GTGCAAAATCGAGCAGCCG 60.513 57.895 0.00 0.00 42.14 5.52
2094 2154 0.586802 CATCAGGACGATGCATGCAG 59.413 55.000 26.69 15.79 44.95 4.41
2108 2168 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2205 2267 6.692681 CCAGCATAATCGTTTGGAAATAACTG 59.307 38.462 0.00 0.00 0.00 3.16
2537 2627 2.112815 GCTGTAATGGGGTCGCACC 61.113 63.158 0.00 0.00 37.60 5.01
2556 2646 1.024271 GATGTTGTGGCACTGTGTGT 58.976 50.000 19.83 0.00 35.75 3.72
2557 2647 1.265095 GAGATGTTGTGGCACTGTGTG 59.735 52.381 19.83 0.00 36.51 3.82
2558 2648 1.597742 GAGATGTTGTGGCACTGTGT 58.402 50.000 19.83 2.47 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.