>input_sequence_69040
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-------------------------------------------CGAACTCCAGCGAGCCTTGTCCACTCTAGCTAGCTCT
AGCACCGCCGCCGCTGCCCCCAACCCAGCTGCCTCCTCATCT---TCGTCGGCGCCGGCGGCCATGATCTCCATCGACCC
CAACATGGTCGTCATCCTGGCCGCCCTCCTCTGCGCGCTCGTCTGCCTCGCCGGCCTCGCCCTCGTCGCGCGCTGCACCT
GCCGTCATGCCCGCCGCTCTTCACCGTTCGCCGGCAATAGCATCACCATGACCTTGCCTCTTCCTCCCCGAGGCCTGAAG
AAGAAGGCCATCGACGCGCTCCCCGTCACAGCAGTGAAAGAAGGGCATCAGCTGGAGGAGCAGTGCGCCATCTGCCTGGC
CGACCTGGCCGCCGGGGAGGAGCTCCGGGTGCTGCCGCGGTGCGGCCACTCCTTCCACGTCGCCTGCGTCGACGCCTGGC
TCCGTGCTCACGCCACCTGCCCCTCCTGCCGCGCCACCATCGTCGACTCGTCAA------CCTCCTCGTCCTCACCGCCA
TCACCGCCGCTCCCGGCCCCGGGCCGGTGCCGGAGGTGCGGAGCGGCCTGTGACGGCGACAGCGTGGCCACTTCTGCTTC
TGCTGATACGGACGGGAGCAGCTTCTTGCCGTAGCTGTCACTAGACAACATCGATCCT------AGTAGTTGGAAACTTG
CAATGGTTGT-------------------------------------TAGTGAAAGAAAGAAAATTAGTGTGCTTCAGTG
GTAAGAGTTATCATGATACTAGAATTGTA--CGTATGTATTCATCGTAAGCTGATTTCTTATAAAATAGTTTAAATATA-
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>chr6A_1_TraesCS6A01G420200
ATATATGCGTGCCTAGTGCACTCGATCAATGCATTGAGAGTTGCACGACCCAAACCTCATCTTCTACATGGTATCTATCG
CAGGCCGATTCTGACCTAGCCTTAGCCGCTGCCGCACCTCCCTTGCGCTGCCGCTGCTGCCGCTACCCGGCGTCGCCACC
CACCGCCACCGCCGCCGCCACCCACCTCCGTCGCTACCCGGCGTCGCCACCCACCGCCGCCGCCGCCGCCACCCACCGCC
GCTGCCGCAGCTTCTTCCTAGCTGCTGCCGCCGCCCCGTGACGCTACCTGCTCCCTCTCGCTTCCGCCAACCGCCGCTGC
GAGTTCTATGGGTGACAGCAGCTTGAGTCGTCCATTGACGACTTTTGCATGCGCCCTCAAGAAGCTTGCCAACGAGCTCC
GCGATCATTTCCTATGAGCACATGACTGCAGGCCCTTTTTCTATTTTCGTATTCACTGAAATCGGTCTCGCCGAACTATA
TCACTGAAATCGTACCACTGAATTCATATTTTCGTATGAATTCAGTGATATAATGTTTGCTCCCTCCGCAGTTGGTCTCG
TTGGTTAAATTTACGGTTAAATTTGGATCTCGGGAAGCGCGGGGGCACTACACTGTGAAATGGAGGGAGTATTATACGTC
ACTATTCACACTATTTTGACCGATTTTTTTTCTTTTTTGAAAAGAAGTCAACGAGATTTTTTCTTTCCGTGATTTT-TTT
TACCAATACAATGGTAGGTCAAGTTTATTTCAATAATATATTCAGAATTTATTGACTTCTTATTTAATTACTAATGTTCT
TTACCATATAGGATGTACACTAAACCCATAGACCAAAAATTCCCCTCCCACCACGTGGGGTGCGT--CGTGTGTGACCGT
CGACTATATAAGCTCCACTAGACACTAGACAGATCAGGACCAGCTCGTGGTACTCATTTGTTGCCAAGCAAACAGCCGCA
CTTCACTCACTGCTTCGCCACTGACCGACCGTCCACCACCATGCGAACTCCAGCGAGCCTTGTCCACTCTAGCTAGCTCT
AGCACCGCCGCCGCTGCCCCCAACCCAGCTGCCTCCTCATCT---TCGTCGGCGCCGGCGGCCATGATCTCCATCGACCC
CAACATGGTCGTCATCCTGGCCGCCCTCCTCTGCGCGCTCGTCTGCCTCGCCGGCCTCGCCCTCGTCGCGCGCTGCACCT
GCCGTCATGCCCGCCGCTCTTCACCGTTCGCCGGCAATAGCATCACCATGACCTTGCCTCTTCCTCCCCGAGGCCTGAAG
AAGAAGGCCATCGACGCGCTCCCCGTCACAGCAGTGAAAGAAGGGCATCAGCTGGAGGAGCAGTGCGCCATCTGCCTGGC
CGACCTGGCCGCCGGGGAGGAGCTCCGGGTGCTGCCGCGGTGCGGCCACTCCTTCCACGTCGCCTGCGTCGACGCCTGGC
TCCGTGCTCACGCCACCTGCCCCTCCTGCCGCGCCACCATCGTCGACTCGTCAA------CCTCCTCGTCCTCACCGCCA
TCACCGCCGCTCCCGGCCCCGGGCCGGTGCCGGAGGTGCGGAGCGGCCTGTGACGGCGACAGCGTGGCCACTTCTGCTTC
TGCTGATACGGACGGGAGCAGCTTCTTGCCGTAGCTGTCACTAGACAACATCGATCCT------AGTAGTTGGAAACTTG
CAATGGTTGT-------------------------------------TAGTGAAAGAAAGAAAATTAGTGTGCTTCAGTG
GTAAGAGTTATCATGATACTAGAATTGTA--CGTATGTATTCATCGTAAGCTGATTTCTTATAAAATAGTTTAAATATAT
TCTCCCAGTTCGATCTGGCCAAATCTGTCTCCAATGGACTTACCTACTTAAGCATGGTGCATTAAGATTGAATAGTACAA
TTCGTATCGAGTTACCACTCAGACCAGTGTTACATCGATCGATGATGTTCCTTTTTTGAAGGCGTAGCCTAGGAGTTGTG
TATTTTTCGTTTATGTCATGTCTTGTATCATAGGGTTAGTGGCTATCTGGAGGAGTTATTGTCGTGAGGTATACGGCCTC
AGGATTTGTTTTTCGCTTTTTTCCTGGT--CGATGATTCGGCTGCTCGATTTTGCACTATTAATAAGATATGGCTGCATG
CATCGTCCTGATGCAGAGGCCGGGGATATCCTCCTTT--AAAAAAAATCTACTACTCCCTCTGTTCGGAAATAAGTGGCG
TGTTCAAATTTGAACTAAAACCACGCCAGTTATTTCCAAACGATTATGCTGGTA------------ATATAAGTAATCAT
GCACTTTCTCCGGTCAAAAAA---TGAACATCTTCAGCTTTAG-TTTTCAATGGAGAGATGAGACACATA----------
TA--ATTTGATGGAATGTATGATTCGCGCTAACTAAGCTAGTGGCTAGTTCACCGGGACCAGGAGAAGTAAGGAGATTCT
CTTTTGCTGCTGGCCGGTGCTTTACATTTGCTGAATCAATTTGTAGGCCAAGCCTAGCCTGGCTATTGGCTGGGTTTCAG
TTGACCTCCGAAAGCAACAAAGAAAAAGAAACGGAGGAGACAGCAGTTCAGTTTTGAGCCGTTGCAGGTGCGACCCCATT
ACAGCACA----------CACAGTGCCACAACATCTCCCAGCCCCTGGTTTAAT-CCACCACTTGAGAATATTAATCATA
CA------CCGCATCAAATTGACAAAGGTGTAACTTTTGTTTTACAGCACAACCCAATACATATGTATAGTTAATTGGAG
AACATAACCCCTGAAAAAACAATTGGAGAGTGTACATATAGCTCAAAGTTTATTAGTTTACAAGAAGTATTTCGCGTGCT
TTCTCCGC-
>chr6D_630
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---------------------------------------------------------------------TATTATACATC
ACTATTCACACTATCTTGACCCTTTTTTTAG----------AAGAAGTCAACGAGATTTTTTCTTTCTGTGAATTTCTTT
TACCAGTACAATGGTAGATCAAGTTTACTTGAAAAATATATTCAGAATTTATTGACTTTTTATTTAATTACTAATGTTTT
TTTCATACATATAC---------ACCCATAGACCAAAATTTCCCCTCCCACGTGGTAGGGTG--TGCCGTGTGTGACCGT
CGACTATATAAGCTCCACTAGACACTAGACAGATCAAGACCAGCTCGTGGTACTCATTTGTTGCCAACCAAACA------
--------ACCGCCTCGTCACTTACCGTACGTCGACCACCATGCGCACTCCAGCGAGCCTTGTCCACTCTAGCT----CT
AGCACCACCGCCGCTGCCCCCAACCCAGCTGCCTCCTCATCTTCCTCGTCGGCGCCGGCGGCCATGATCTCCATCGACCC
CAACATGGTGGTCATCCTGGCCTCCCTCCTCTGCGCGCTCGTCTGCCTCGCCGGCCTCGCCCTCGTCGCGCGCTGCACCT
GCCGCCACGCCCGCCGCTCTTCACCGTTCGCCGGCAATAGCATCACCATGACCTTGCCTCTTCCTCCCCGAGGCCTGAAG
AAGAAGGCCATCGACGCGCTCCCCGTCACGGCAGTGAAAGAAGGGCACCAGCTGGAGGAGCAGTGCGCCATCTGCCTGGC
CGACCTGGCCACCGGGGAGGAGCTCCGGGTGCTGCCGCGGTGCGGCCACTCCTTCCACGTCGCCTGCGTCGACGCCTGGC
TCCGAACGTGCGCCACCTGCCCCACCTGCCGTGCCGCCATTATCGACTCGTCAATGTCCTCCTCGTCCTGCTCGCTGCCG
GCGCCGCCGCTCCCGGCACCGGGCCGGTGCCGGAGGTGCGGAGCGGCCTGTGACGGCGAGGGCGTGGCCGCTTCTGCTTC
TGCTGACACGGACGGGAGCAGCTTCTTGCCGTAGCTGCCACTAGACAACATCGATCCTAG---------TTGCAAACTTG
CAATGGTTGTTAGTGCAATTCAGTTAGCTATGAATTGG------CTATAGTGAAAGAAAGAAAATTAGTGTGCTTCAGTG
GTA-GAGTTATCATGACACTAGAATTGTATACGTATGTATTCA-----------------ATAAATTTTTTGAGTCAA--
-------------------------------------------------------------------------AGTACAC
TTTGTATCCAGATACCACTCAGACCAGTGTTA-ATCGATCGATGATGTACTGTTGTACAACTACGGGCAACTGAGCTAGA
CCTAGTAATAGGTTACATACTACTGCTACCTCCGTCCAGGTTTACCGGTCCCGGCCCTCTTGCATTTTGAGTCAAAGTTT
AACTATAGATTCAACTAGCAAAATATAATTTATGTGTAACACAAATAATATAATTGAAAG--------------------
------------------------------CTTCTTTCAAATATAAATCTATCAATGTAATTTTTACGGCATATAACTTA
TAATCTATCAAATGTAAGGTCAAAATTTAGCATAAGTACTAAGGGGACTAATAAACCCGGACAGATATACTAGTAATTAT
GCATGTTCTCCGGTCAAAAAA---TGAACATCTTCAGCTTTAATTTTTGAATGGAGAGATGAGACGCATA----------
TATAATTTGATGGAATGTATGATTCGCGCTAGCTAAGCTAGTGG--------------CCAGGAGAAGTAAGGAGATTCT
CTTTTGCTGCTGGCCGGTGCTTTACATTTGCTGAATCAATTTGTAGCCCAAGCCTCGCCTGGCTATTGGCTGGGTTTCAG
TTGACCTCCGAAAGCAACAAAGAAAAAGAAACGGAGGAGACAGCAGTTCAGTTTTGAGCCGTTGCAAGTGCGACACCATC
GATCACATCACAGCACAGCACAGTGCCCCAACACCTCCCAGCCCCTGGTTTAAT-CCACCACTTGAGAATATTAGTCATA
CAGATACACCGCATCAAATTGACAAAGATGTAACTTTTGTTTTACAGCACAGCCCAATAGATATGTATAGTTAATTGAAG
AACATAAC-CCTCAAAAAACAATTGGTGAATAT--ATATACCTCAAAGTTTATTAGTTTACTAGAACTATTTCATGCACT
TTGCTCCGC
>chr6B_833
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---------------------------------CAAAAATTCCCCTCCCACCACGTGGGGTG--T--CGTGTGTGACCGT
CGACTATATAACCTCCACTAGACACTAGACAGATCAGGACCAGCTCGTGGTACTCATTTGTTGCCAAGCAAACAGCCGCA
CTTCACTCACTGCTTCGCCACTGACCGACCGTCCACCACCATGCCAACTCCAGCGAGCCTTGTCCACTCTAGCT----CT
AGCACCGCCGCC---------------GCTGCCTCCTCATCTTCGTCGTCGGCGCCGGCGGCCATGATCTCCATCGACCC
CAACATGGTGGTCATCCTGGCCGCCCTCCTCTGCGCGCTCGTCTGCCTCGCCGGCCTCGCCCTCGTCGCGCGCTGCACCT
GCCGCCACGCCCGCCGCTCTTTACCGTTCGCCGGCAATAGCATCACCATGACCTTGCCTCTTCCTCCCCGAGGCCTGAAG
AAGAAGGCAATCGACGCGCTCCCCGTCACGGCAGTGAAGGAAGGGCACCAGCTGGAGGAGCAGTGCGCCATCTGCCTGGC
GGACCTGGTCGCCGGGGAGGAGCTCCGGGTGCTGCCGCGGTGCGGCCACTCCTTCCACGTCGCCTGCGTCGACGCCTGGC
TCCGAACGTGCGCCACCTGCCCCTCCTGCCGCGCCACCATCCTCGATTCGTCAGTGTCCTCCTCGTCCTGCTCGCCGCCG
GCGCCACCGCTCGCAGCCCCGGGCCGGTGCCGGAGCTGTGGAGCGGCCTGTGACGGCGACAGCGTGGCCACTTCTGCTTC
TGCTGACACGGACGGGAGCAGCTTCTTGCCGTAGCTGTCACTGGACAACATCGATCCTAGCTACAGTAGTTGCAAACTTG
CAATGGTTGTTAGTGCAATTCAGTTAGCTACGAATTGCATTTGCCTATAGTGAAAGAAAGAAAATTAGTGTGCTTCAGTG
GTAAGAGTTATCATGATACTTGAATTGTA--CATATGTATTCA-----------------ATATAATATTTGAGATATAT
TCTCC-AGTTCGATCTGGCCAAATCTGTATCCAATGGACTTACCTACTTAAG-ATGGTACATTAACATTGAATAGTACAA
TTTGTATCGAGTTACCACTCAGACCAATGTTACATCGATCGATGATGTTCCTTC-TTGAAGGCGTAGCCTAGGAGTTGTC
TATTTGTCGTTTATGTTGTGTCATGTGTCATAGGGTTAGTGGCTATCTGGGGGAGTTACTGTCGCGAGGTATACGGCCTC
AGGGTTTCTGTTTCTCTTTTTTTTTCGGGCCGATGATTTGGCTGCTCGCTTTTGCACTATTAATAAGATATGGTTGCATG
CATCGTCGTGATGCAGAGACCAGGGATATCCTTCTTTTCAAAAAAAATCTACTACTCCCTCTGTTCGGAAATAAGTGGTG
TGTTCAAATTTGAACTAAAACCACGC-AGTTATTTCCAGACGATTATGCTGGTA------------ATATAAGTAATCAT
GCACTTTCTCCGGTGAAAAAAAAATGAACAAATTCAGTTTTAGTTTTTCAATGGAGAGATGAGACACATCACACATACAG
TATAATTTGATGGAATGTATGATTCGCGCTAGCTAAGCTAGTGGCTAGTTCACCGGGACTAGGAGAGCTAAGGAGATTCT
CTTTTGCTGCTGGCCGGTGCTTTACACTTGCTGAATCAATTTGTAGCCCAAGCCTAGCCTGGCTATTGGCTGGGTTTCAG
TTGACCTCCGAAAGCAACAAAGAAAAAGAAACGGAGGGGACAGCAGTTGAGTTTTGAGCCGTTGCAAGTGCGACCCCATT
-------------------ACAGTGCCACAACATCTCCCAGCCCCTGGTTTAATCCCACCACTTGAGAATATTAATCATA
CA------CCGCATCAAATTGACAAAGGTGTAACTTTTGTTTTACAGCACAGCCCAATACATATGTATAGTTAATTGGGG
ATCATAACCGCTCAAAAAACAATTGGAGAGTGTACATATAGCTCAAAGTTTCTTAGTTTACAAGAAGTATTTCACATGCT
TTCTCCGC-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--
--------------S------SS------SSSSSSSSSSSS--------------------------S----S-------
-----S-----------S---------S--S--S------------------------S-------------------S-
--S-SSSSSSSS-SSSSSSSSSS---------------------------------------SS----------------
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--------------------------------------------------------------------------SSSS--
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---------S----------------------------------------------------------------------
----S--S------------------------------------------------------------------------
-----------------------------S-----------------S--------------------------------
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----SS-SSS-------------------------------S----------------------S--S-S---S-----S
S-S-----------------------------------------------------------------------------
------S-----------------------------------------------------------------S-------
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-------------------------------------------SSSSSSSSSSSSSSSSS--------S--S-S------
-----S----------------------S-----------------------S-----S------S--------------
--S---------------------------------------------------S------------------------S
----------------SS----S---S-----------------------S-------S---------------------
---S----------S-------SS-S-S----------S---------S------------------------S------
-------S----------S--S----------S---------------------------------------------S-
--------------------------S-----------S-----------------------------------------
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-------------------------------S------------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------------------------------------S-------------
SSSSSSSS------------------------------------------------------------------------
---------------------------------------------------S----------------------------
------------S------------------------------------------------------------S------
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>forward_268
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--------AGCTTCTTCCTAGCTGCTGC----------------------------------------------------
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>reverse_1482
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-----------------------------------------GTCGACTCGTCAACCTCCTC-------------------
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>forward_472
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----------------------------------------------------TCACTGAAATCGGTCTCGCC--------
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>reverse_2059
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----------------------------------------------------------TTGTCGTGAGGTATACGGCC--
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