Multiple sequence alignment - TraesCS6A01G417000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G417000 chr6A 100.000 2325 0 0 1 2325 615670477 615672801 0.000000e+00 4294
1 TraesCS6A01G417000 chr6A 85.048 1866 223 28 225 2069 615632842 615634672 0.000000e+00 1849
2 TraesCS6A01G417000 chr6D 94.584 1717 88 4 360 2072 470855041 470856756 0.000000e+00 2651
3 TraesCS6A01G417000 chr6D 86.034 1611 191 22 225 1823 470816346 470817934 0.000000e+00 1698
4 TraesCS6A01G417000 chr6D 96.748 369 12 0 1 369 470854501 470854869 1.180000e-172 616
5 TraesCS6A01G417000 chr6D 94.094 254 15 0 2072 2325 377567909 377567656 1.010000e-103 387
6 TraesCS6A01G417000 chr2D 96.063 254 10 0 2072 2325 36275114 36275367 4.620000e-112 414
7 TraesCS6A01G417000 chr2D 94.208 259 14 1 2067 2325 42524535 42524792 6.020000e-106 394
8 TraesCS6A01G417000 chr2D 94.071 253 15 0 2073 2325 35028806 35029058 3.620000e-103 385
9 TraesCS6A01G417000 chr7A 95.349 258 11 1 2068 2325 82192073 82191817 2.150000e-110 409
10 TraesCS6A01G417000 chr4D 94.922 256 12 1 2070 2325 74226254 74226000 1.290000e-107 399
11 TraesCS6A01G417000 chr3D 94.163 257 15 0 2069 2325 25973399 25973655 2.170000e-105 392
12 TraesCS6A01G417000 chr5D 94.094 254 15 0 2072 2325 104117824 104117571 1.010000e-103 387
13 TraesCS6A01G417000 chr5A 93.774 257 15 1 2070 2325 50201658 50201402 3.620000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G417000 chr6A 615670477 615672801 2324 False 4294.0 4294 100.000 1 2325 1 chr6A.!!$F2 2324
1 TraesCS6A01G417000 chr6A 615632842 615634672 1830 False 1849.0 1849 85.048 225 2069 1 chr6A.!!$F1 1844
2 TraesCS6A01G417000 chr6D 470816346 470817934 1588 False 1698.0 1698 86.034 225 1823 1 chr6D.!!$F1 1598
3 TraesCS6A01G417000 chr6D 470854501 470856756 2255 False 1633.5 2651 95.666 1 2072 2 chr6D.!!$F2 2071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 3.068307 CGAATAGAGGGTTAGGACACCAG 59.932 52.174 0.0 0.0 38.79 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1682 0.169009 GGTCATGCAAGAAAGACGGC 59.831 55.0 0.0 0.0 31.93 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.678583 TGGATTTGGCAAAGAATGAAACAA 58.321 33.333 18.61 0.00 0.00 2.83
79 80 4.183865 GCTTTTCTTATGGGCACAAATCC 58.816 43.478 0.00 0.00 0.00 3.01
127 128 3.068307 CGAATAGAGGGTTAGGACACCAG 59.932 52.174 0.00 0.00 38.79 4.00
130 131 3.778622 AGAGGGTTAGGACACCAGTAT 57.221 47.619 0.00 0.00 38.79 2.12
280 282 9.177608 TCCTCAAGAAAATATACAGATTTGTGG 57.822 33.333 0.00 0.00 38.23 4.17
302 304 6.005198 TGGGGTATTGATTTTGACGTAAAGT 58.995 36.000 0.00 0.00 0.00 2.66
311 313 8.996024 TGATTTTGACGTAAAGTGATATCAGA 57.004 30.769 5.42 0.00 0.00 3.27
835 1018 8.975410 GCATATGCAACATATATCAACATTGT 57.025 30.769 22.84 0.00 41.59 2.71
909 1092 9.720874 AGATATGGATGTGCCTCTATATAAAGA 57.279 33.333 0.00 0.00 37.63 2.52
967 1150 5.707298 CACACCATAAGAACACAAGGAAGAT 59.293 40.000 0.00 0.00 0.00 2.40
1008 1191 0.179089 CTCTTCTCCTCATGGCACCG 60.179 60.000 0.00 0.00 0.00 4.94
1054 1237 2.883888 GCCAGGTCCATTGCTTTCCTTA 60.884 50.000 0.00 0.00 0.00 2.69
1066 1249 2.545946 GCTTTCCTTATCCTCGTGATGC 59.454 50.000 1.30 0.00 34.76 3.91
1068 1251 3.735237 TTCCTTATCCTCGTGATGCTC 57.265 47.619 1.30 0.00 34.76 4.26
1090 1273 3.857157 TTGCTTGTACCCTATCATCCC 57.143 47.619 0.00 0.00 0.00 3.85
1095 1278 0.320697 GTACCCTATCATCCCGCCAC 59.679 60.000 0.00 0.00 0.00 5.01
1221 1405 6.096987 CCATATTGCATAGGTCCGATACTAGT 59.903 42.308 0.00 0.00 0.00 2.57
1431 1615 7.890127 TGAATAAACTCCTTGAATGGAATGAGT 59.110 33.333 0.00 0.00 33.68 3.41
1469 1655 9.504708 TGTAGACGGAATAAAATGTTCCTTTAA 57.495 29.630 4.67 0.00 42.36 1.52
1489 1675 8.034215 CCTTTAAAATGTGATTTGTGGCATCTA 58.966 33.333 0.00 0.00 31.77 1.98
1491 1677 5.981088 AAATGTGATTTGTGGCATCTACA 57.019 34.783 0.00 0.00 0.00 2.74
1496 1682 1.825090 TTTGTGGCATCTACAGCAGG 58.175 50.000 0.00 0.00 0.00 4.85
1499 1685 2.590007 GGCATCTACAGCAGGCCG 60.590 66.667 0.00 0.00 34.56 6.13
1545 1736 9.804977 TTTTCAATCCAACCCAATGATTTTAAT 57.195 25.926 0.00 0.00 0.00 1.40
1623 1824 9.218440 GGAATCAATTCTAAATTTCTGCCAAAA 57.782 29.630 0.00 0.00 37.00 2.44
1743 1945 0.625316 AGTTGGCACCATAGCATCCA 59.375 50.000 0.00 0.00 35.83 3.41
1765 1968 5.358090 CAGTGCACTTGATATGATCTCTGT 58.642 41.667 18.94 0.00 0.00 3.41
1792 1995 9.520204 AGAAATTAAGTGTGATGAAAACAGTTG 57.480 29.630 6.84 0.00 40.52 3.16
1795 1998 5.659440 AAGTGTGATGAAAACAGTTGGTT 57.341 34.783 0.00 0.00 39.22 3.67
1846 2049 2.142292 AACCCCATCGAGCTTGGCTT 62.142 55.000 0.00 0.00 39.88 4.35
1902 2105 6.069323 ACACTCAATGGTGGTTGGGTATAATA 60.069 38.462 6.77 0.00 40.71 0.98
1968 2175 3.139077 GTCTACCCAAACCAACACTCAG 58.861 50.000 0.00 0.00 0.00 3.35
2021 2228 2.984562 TCGATGCATTGCAGGTAAAGA 58.015 42.857 17.52 6.89 43.65 2.52
2031 2238 5.465532 TTGCAGGTAAAGATTTCATTGCA 57.534 34.783 6.49 6.49 38.41 4.08
2033 2240 3.853671 GCAGGTAAAGATTTCATTGCACG 59.146 43.478 0.00 0.00 0.00 5.34
2036 2243 6.324819 CAGGTAAAGATTTCATTGCACGAAT 58.675 36.000 0.00 0.00 0.00 3.34
2038 2245 7.641411 CAGGTAAAGATTTCATTGCACGAATAG 59.359 37.037 0.00 0.00 0.00 1.73
2075 2282 8.502105 TTAGAAATGCTAACTAAACTTAGGGC 57.498 34.615 1.76 3.77 34.21 5.19
2076 2283 5.886474 AGAAATGCTAACTAAACTTAGGGCC 59.114 40.000 0.00 0.00 35.08 5.80
2077 2284 5.452341 AATGCTAACTAAACTTAGGGCCT 57.548 39.130 12.58 12.58 35.08 5.19
2078 2285 4.216411 TGCTAACTAAACTTAGGGCCTG 57.784 45.455 18.53 2.03 35.08 4.85
2079 2286 3.585732 TGCTAACTAAACTTAGGGCCTGT 59.414 43.478 18.53 2.84 35.08 4.00
2080 2287 4.042435 TGCTAACTAAACTTAGGGCCTGTT 59.958 41.667 18.53 10.15 35.08 3.16
2081 2288 5.008331 GCTAACTAAACTTAGGGCCTGTTT 58.992 41.667 21.42 21.42 37.60 2.83
2082 2289 5.106277 GCTAACTAAACTTAGGGCCTGTTTG 60.106 44.000 24.63 18.15 35.77 2.93
2083 2290 3.763057 ACTAAACTTAGGGCCTGTTTGG 58.237 45.455 24.63 23.75 37.88 3.28
2084 2291 2.767644 AAACTTAGGGCCTGTTTGGT 57.232 45.000 18.53 4.61 38.35 3.67
2085 2292 2.767644 AACTTAGGGCCTGTTTGGTT 57.232 45.000 18.53 10.53 38.35 3.67
2086 2293 2.287977 ACTTAGGGCCTGTTTGGTTC 57.712 50.000 18.53 0.00 38.35 3.62
2087 2294 1.203013 ACTTAGGGCCTGTTTGGTTCC 60.203 52.381 18.53 0.00 38.35 3.62
2088 2295 0.854218 TTAGGGCCTGTTTGGTTCCA 59.146 50.000 18.53 0.00 38.35 3.53
2089 2296 0.854218 TAGGGCCTGTTTGGTTCCAA 59.146 50.000 18.53 0.00 38.35 3.53
2090 2297 0.190815 AGGGCCTGTTTGGTTCCAAT 59.809 50.000 4.50 0.00 38.35 3.16
2091 2298 1.431243 AGGGCCTGTTTGGTTCCAATA 59.569 47.619 4.50 0.00 38.35 1.90
2092 2299 2.158234 AGGGCCTGTTTGGTTCCAATAA 60.158 45.455 4.50 0.00 38.35 1.40
2093 2300 2.233676 GGGCCTGTTTGGTTCCAATAAG 59.766 50.000 0.84 6.17 38.35 1.73
2094 2301 2.897326 GGCCTGTTTGGTTCCAATAAGT 59.103 45.455 5.06 0.00 38.35 2.24
2095 2302 3.056821 GGCCTGTTTGGTTCCAATAAGTC 60.057 47.826 5.06 0.00 38.35 3.01
2096 2303 3.572255 GCCTGTTTGGTTCCAATAAGTCA 59.428 43.478 5.06 1.06 38.35 3.41
2097 2304 4.558697 GCCTGTTTGGTTCCAATAAGTCAC 60.559 45.833 5.06 0.71 38.35 3.67
2098 2305 4.827284 CCTGTTTGGTTCCAATAAGTCACT 59.173 41.667 5.06 0.00 0.00 3.41
2099 2306 5.301805 CCTGTTTGGTTCCAATAAGTCACTT 59.698 40.000 5.06 0.00 0.00 3.16
2100 2307 6.142818 TGTTTGGTTCCAATAAGTCACTTG 57.857 37.500 0.00 0.00 0.00 3.16
2101 2308 5.888724 TGTTTGGTTCCAATAAGTCACTTGA 59.111 36.000 0.00 0.00 0.00 3.02
2102 2309 6.183360 TGTTTGGTTCCAATAAGTCACTTGAC 60.183 38.462 0.00 0.77 45.08 3.18
2130 2337 4.813296 GTCAGGTGACTTAAAACCAGTG 57.187 45.455 2.72 0.00 41.65 3.66
2131 2338 4.448210 GTCAGGTGACTTAAAACCAGTGA 58.552 43.478 2.72 0.00 41.65 3.41
2132 2339 4.272748 GTCAGGTGACTTAAAACCAGTGAC 59.727 45.833 2.72 6.43 41.65 3.67
2133 2340 4.163458 TCAGGTGACTTAAAACCAGTGACT 59.837 41.667 0.00 0.00 40.21 3.41
2134 2341 4.881850 CAGGTGACTTAAAACCAGTGACTT 59.118 41.667 0.00 0.00 40.21 3.01
2135 2342 6.053005 CAGGTGACTTAAAACCAGTGACTTA 58.947 40.000 0.00 0.00 40.21 2.24
2136 2343 6.710744 CAGGTGACTTAAAACCAGTGACTTAT 59.289 38.462 0.00 0.00 40.21 1.73
2137 2344 7.876068 CAGGTGACTTAAAACCAGTGACTTATA 59.124 37.037 0.00 0.00 40.21 0.98
2138 2345 8.434392 AGGTGACTTAAAACCAGTGACTTATAA 58.566 33.333 0.00 0.00 37.44 0.98
2139 2346 8.718734 GGTGACTTAAAACCAGTGACTTATAAG 58.281 37.037 11.05 11.05 36.41 1.73
2140 2347 9.269453 GTGACTTAAAACCAGTGACTTATAAGT 57.731 33.333 18.05 18.05 43.16 2.24
2156 2363 8.225603 ACTTATAAGTCATGCCTATTTGGTTG 57.774 34.615 12.50 0.00 32.86 3.77
2157 2364 7.834181 ACTTATAAGTCATGCCTATTTGGTTGT 59.166 33.333 12.50 0.00 32.86 3.32
2158 2365 6.699575 ATAAGTCATGCCTATTTGGTTGTC 57.300 37.500 0.00 0.00 38.35 3.18
2159 2366 4.032960 AGTCATGCCTATTTGGTTGTCA 57.967 40.909 0.00 0.00 38.35 3.58
2160 2367 3.758554 AGTCATGCCTATTTGGTTGTCAC 59.241 43.478 0.00 0.00 38.35 3.67
2161 2368 3.088532 TCATGCCTATTTGGTTGTCACC 58.911 45.455 0.00 0.00 44.56 4.02
2162 2369 2.969821 TGCCTATTTGGTTGTCACCT 57.030 45.000 0.00 0.00 44.61 4.00
2163 2370 2.513753 TGCCTATTTGGTTGTCACCTG 58.486 47.619 0.00 0.00 44.61 4.00
2164 2371 2.107378 TGCCTATTTGGTTGTCACCTGA 59.893 45.455 0.00 0.00 44.61 3.86
2165 2372 2.488153 GCCTATTTGGTTGTCACCTGAC 59.512 50.000 0.00 0.00 44.61 3.51
2166 2373 3.810743 GCCTATTTGGTTGTCACCTGACT 60.811 47.826 6.97 0.00 44.61 3.41
2167 2374 4.398319 CCTATTTGGTTGTCACCTGACTT 58.602 43.478 6.97 0.00 44.61 3.01
2168 2375 5.556915 CCTATTTGGTTGTCACCTGACTTA 58.443 41.667 6.97 0.00 44.61 2.24
2169 2376 6.180472 CCTATTTGGTTGTCACCTGACTTAT 58.820 40.000 6.97 0.00 44.61 1.73
2170 2377 7.335627 CCTATTTGGTTGTCACCTGACTTATA 58.664 38.462 6.97 0.00 44.61 0.98
2171 2378 7.827236 CCTATTTGGTTGTCACCTGACTTATAA 59.173 37.037 6.97 0.00 44.61 0.98
2172 2379 7.687941 ATTTGGTTGTCACCTGACTTATAAG 57.312 36.000 11.05 11.05 44.61 1.73
2173 2380 5.818678 TGGTTGTCACCTGACTTATAAGT 57.181 39.130 18.05 18.05 44.61 2.24
2174 2381 5.790593 TGGTTGTCACCTGACTTATAAGTC 58.209 41.667 30.61 30.61 46.58 3.01
2187 2394 6.046290 ACTTATAAGTCACCTAACCACACC 57.954 41.667 12.50 0.00 32.86 4.16
2188 2395 5.783875 ACTTATAAGTCACCTAACCACACCT 59.216 40.000 12.50 0.00 32.86 4.00
2189 2396 6.271624 ACTTATAAGTCACCTAACCACACCTT 59.728 38.462 12.50 0.00 32.86 3.50
2190 2397 3.945640 AAGTCACCTAACCACACCTTT 57.054 42.857 0.00 0.00 0.00 3.11
2191 2398 3.487120 AGTCACCTAACCACACCTTTC 57.513 47.619 0.00 0.00 0.00 2.62
2192 2399 2.105993 AGTCACCTAACCACACCTTTCC 59.894 50.000 0.00 0.00 0.00 3.13
2193 2400 2.128535 TCACCTAACCACACCTTTCCA 58.871 47.619 0.00 0.00 0.00 3.53
2194 2401 2.158726 TCACCTAACCACACCTTTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
2195 2402 1.144298 ACCTAACCACACCTTTCCACC 59.856 52.381 0.00 0.00 0.00 4.61
2196 2403 1.423921 CCTAACCACACCTTTCCACCT 59.576 52.381 0.00 0.00 0.00 4.00
2197 2404 2.158519 CCTAACCACACCTTTCCACCTT 60.159 50.000 0.00 0.00 0.00 3.50
2198 2405 1.775385 AACCACACCTTTCCACCTTG 58.225 50.000 0.00 0.00 0.00 3.61
2199 2406 0.755327 ACCACACCTTTCCACCTTGC 60.755 55.000 0.00 0.00 0.00 4.01
2200 2407 0.468029 CCACACCTTTCCACCTTGCT 60.468 55.000 0.00 0.00 0.00 3.91
2201 2408 1.402787 CACACCTTTCCACCTTGCTT 58.597 50.000 0.00 0.00 0.00 3.91
2202 2409 1.756538 CACACCTTTCCACCTTGCTTT 59.243 47.619 0.00 0.00 0.00 3.51
2203 2410 2.168313 CACACCTTTCCACCTTGCTTTT 59.832 45.455 0.00 0.00 0.00 2.27
2204 2411 2.837591 ACACCTTTCCACCTTGCTTTTT 59.162 40.909 0.00 0.00 0.00 1.94
2226 2433 6.850263 TTTATATAAAGGTGATGGGACCCA 57.150 37.500 17.73 17.73 36.56 4.51
2227 2434 4.724279 ATATAAAGGTGATGGGACCCAC 57.276 45.455 17.78 10.73 35.80 4.61
2228 2435 1.748732 TAAAGGTGATGGGACCCACA 58.251 50.000 17.78 13.40 35.80 4.17
2229 2436 0.112412 AAAGGTGATGGGACCCACAC 59.888 55.000 26.03 26.03 35.80 3.82
2230 2437 1.065410 AAGGTGATGGGACCCACACA 61.065 55.000 30.72 24.36 37.32 3.72
2231 2438 1.065410 AGGTGATGGGACCCACACAA 61.065 55.000 30.72 13.06 37.32 3.33
2232 2439 0.178975 GGTGATGGGACCCACACAAA 60.179 55.000 30.72 11.63 37.32 2.83
2233 2440 1.698506 GTGATGGGACCCACACAAAA 58.301 50.000 27.70 4.48 35.80 2.44
2234 2441 1.613437 GTGATGGGACCCACACAAAAG 59.387 52.381 27.70 0.00 35.80 2.27
2235 2442 1.256812 GATGGGACCCACACAAAAGG 58.743 55.000 17.78 0.00 35.80 3.11
2240 2447 3.869481 CCCACACAAAAGGGGGTG 58.131 61.111 0.00 0.00 41.58 4.61
2241 2448 1.231641 CCCACACAAAAGGGGGTGA 59.768 57.895 0.00 0.00 41.58 4.02
2242 2449 1.112916 CCCACACAAAAGGGGGTGAC 61.113 60.000 0.00 0.00 41.58 3.67
2243 2450 0.106217 CCACACAAAAGGGGGTGACT 60.106 55.000 0.00 0.00 38.38 3.41
2244 2451 1.687996 CCACACAAAAGGGGGTGACTT 60.688 52.381 0.00 0.00 38.38 3.01
2245 2452 2.423660 CCACACAAAAGGGGGTGACTTA 60.424 50.000 0.00 0.00 38.38 2.24
2246 2453 3.496331 CACACAAAAGGGGGTGACTTAT 58.504 45.455 0.00 0.00 38.38 1.73
2247 2454 4.507691 CCACACAAAAGGGGGTGACTTATA 60.508 45.833 0.00 0.00 38.38 0.98
2248 2455 5.074115 CACACAAAAGGGGGTGACTTATAA 58.926 41.667 0.00 0.00 38.38 0.98
2249 2456 5.183140 CACACAAAAGGGGGTGACTTATAAG 59.817 44.000 11.05 11.05 38.38 1.73
2250 2457 5.163023 ACACAAAAGGGGGTGACTTATAAGT 60.163 40.000 18.05 18.05 43.16 2.24
2251 2458 5.773176 CACAAAAGGGGGTGACTTATAAGTT 59.227 40.000 18.96 3.63 39.88 2.66
2252 2459 6.266786 CACAAAAGGGGGTGACTTATAAGTTT 59.733 38.462 18.96 5.24 39.88 2.66
2253 2460 6.842280 ACAAAAGGGGGTGACTTATAAGTTTT 59.158 34.615 18.96 10.67 39.88 2.43
2254 2461 8.005976 ACAAAAGGGGGTGACTTATAAGTTTTA 58.994 33.333 18.96 6.80 39.88 1.52
2255 2462 8.862085 CAAAAGGGGGTGACTTATAAGTTTTAA 58.138 33.333 18.96 3.77 39.88 1.52
2256 2463 8.645814 AAAGGGGGTGACTTATAAGTTTTAAG 57.354 34.615 18.96 10.49 39.88 1.85
2257 2464 7.339177 AGGGGGTGACTTATAAGTTTTAAGT 57.661 36.000 18.96 15.86 41.41 2.24
2258 2465 7.762610 AGGGGGTGACTTATAAGTTTTAAGTT 58.237 34.615 18.96 2.13 39.40 2.66
2259 2466 8.893560 AGGGGGTGACTTATAAGTTTTAAGTTA 58.106 33.333 18.96 11.68 39.40 2.24
2260 2467 9.170734 GGGGGTGACTTATAAGTTTTAAGTTAG 57.829 37.037 18.96 0.00 39.40 2.34
2261 2468 9.170734 GGGGTGACTTATAAGTTTTAAGTTAGG 57.829 37.037 18.96 0.00 39.40 2.69
2262 2469 9.170734 GGGTGACTTATAAGTTTTAAGTTAGGG 57.829 37.037 18.96 0.00 39.40 3.53
2263 2470 9.730705 GGTGACTTATAAGTTTTAAGTTAGGGT 57.269 33.333 18.96 0.00 39.40 4.34
2269 2476 9.796180 TTATAAGTTTTAAGTTAGGGTGAAGCA 57.204 29.630 0.00 0.00 0.00 3.91
2270 2477 8.700439 ATAAGTTTTAAGTTAGGGTGAAGCAA 57.300 30.769 0.00 0.00 0.00 3.91
2271 2478 6.387041 AGTTTTAAGTTAGGGTGAAGCAAC 57.613 37.500 0.00 0.00 0.00 4.17
2272 2479 6.127101 AGTTTTAAGTTAGGGTGAAGCAACT 58.873 36.000 0.00 0.00 32.73 3.16
2273 2480 6.605995 AGTTTTAAGTTAGGGTGAAGCAACTT 59.394 34.615 4.24 4.24 42.32 2.66
2274 2481 7.776500 AGTTTTAAGTTAGGGTGAAGCAACTTA 59.224 33.333 0.00 0.00 40.63 2.24
2275 2482 8.573885 GTTTTAAGTTAGGGTGAAGCAACTTAT 58.426 33.333 6.60 0.00 40.95 1.73
2276 2483 7.681939 TTAAGTTAGGGTGAAGCAACTTATG 57.318 36.000 6.60 0.00 40.95 1.90
2277 2484 5.499004 AGTTAGGGTGAAGCAACTTATGA 57.501 39.130 0.00 0.00 0.00 2.15
2278 2485 5.246307 AGTTAGGGTGAAGCAACTTATGAC 58.754 41.667 0.00 0.00 0.00 3.06
2279 2486 5.013183 AGTTAGGGTGAAGCAACTTATGACT 59.987 40.000 0.00 0.00 0.00 3.41
2280 2487 4.373156 AGGGTGAAGCAACTTATGACTT 57.627 40.909 0.00 0.00 0.00 3.01
2281 2488 5.499004 AGGGTGAAGCAACTTATGACTTA 57.501 39.130 0.00 0.00 0.00 2.24
2282 2489 6.067217 AGGGTGAAGCAACTTATGACTTAT 57.933 37.500 0.00 0.00 0.00 1.73
2283 2490 7.195374 AGGGTGAAGCAACTTATGACTTATA 57.805 36.000 0.00 0.00 0.00 0.98
2284 2491 7.630082 AGGGTGAAGCAACTTATGACTTATAA 58.370 34.615 0.00 0.00 0.00 0.98
2295 2502 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
2296 2503 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
2297 2504 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
2298 2505 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
2299 2506 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
2300 2507 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
2305 2512 9.675464 TTATAAGTTGGGGTGACTTATAAGTTG 57.325 33.333 18.96 0.00 46.80 3.16
2306 2513 4.918588 AGTTGGGGTGACTTATAAGTTGG 58.081 43.478 18.96 0.00 39.88 3.77
2307 2514 4.014406 GTTGGGGTGACTTATAAGTTGGG 58.986 47.826 18.96 0.00 39.88 4.12
2308 2515 3.261962 TGGGGTGACTTATAAGTTGGGT 58.738 45.455 18.96 0.00 39.88 4.51
2309 2516 3.264964 TGGGGTGACTTATAAGTTGGGTC 59.735 47.826 18.96 7.15 39.88 4.46
2310 2517 3.522343 GGGGTGACTTATAAGTTGGGTCT 59.478 47.826 18.96 0.00 39.88 3.85
2311 2518 4.514401 GGGTGACTTATAAGTTGGGTCTG 58.486 47.826 18.96 0.00 39.88 3.51
2312 2519 4.019591 GGGTGACTTATAAGTTGGGTCTGT 60.020 45.833 18.96 0.00 39.88 3.41
2313 2520 5.514310 GGGTGACTTATAAGTTGGGTCTGTT 60.514 44.000 18.96 0.00 39.88 3.16
2314 2521 6.002082 GGTGACTTATAAGTTGGGTCTGTTT 58.998 40.000 18.96 0.00 39.88 2.83
2315 2522 6.072673 GGTGACTTATAAGTTGGGTCTGTTTG 60.073 42.308 18.96 0.00 39.88 2.93
2316 2523 6.001460 TGACTTATAAGTTGGGTCTGTTTGG 58.999 40.000 18.96 0.00 39.88 3.28
2317 2524 5.948842 ACTTATAAGTTGGGTCTGTTTGGT 58.051 37.500 12.50 0.00 35.21 3.67
2318 2525 7.081857 ACTTATAAGTTGGGTCTGTTTGGTA 57.918 36.000 12.50 0.00 35.21 3.25
2319 2526 7.519927 ACTTATAAGTTGGGTCTGTTTGGTAA 58.480 34.615 12.50 0.00 35.21 2.85
2320 2527 8.000127 ACTTATAAGTTGGGTCTGTTTGGTAAA 59.000 33.333 12.50 0.00 35.21 2.01
2321 2528 8.763984 TTATAAGTTGGGTCTGTTTGGTAAAA 57.236 30.769 0.00 0.00 0.00 1.52
2322 2529 7.849322 ATAAGTTGGGTCTGTTTGGTAAAAT 57.151 32.000 0.00 0.00 0.00 1.82
2323 2530 8.943594 ATAAGTTGGGTCTGTTTGGTAAAATA 57.056 30.769 0.00 0.00 0.00 1.40
2324 2531 7.663043 AAGTTGGGTCTGTTTGGTAAAATAA 57.337 32.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.660887 TCAAACTTTGTTTCATTCTTTGCC 57.339 33.333 1.44 0.00 0.00 4.52
11 12 9.820725 TCATGATCAAACTTTGTTTCATTCTTT 57.179 25.926 0.00 0.57 34.66 2.52
24 25 8.853077 TTCACTACTCATTCATGATCAAACTT 57.147 30.769 0.00 0.00 36.02 2.66
79 80 8.857216 GCTTTAACAATGACTCTCAAATTGATG 58.143 33.333 0.00 0.00 35.67 3.07
127 128 2.753452 TCTCTTCCGGTGACTCACATAC 59.247 50.000 11.34 0.00 35.86 2.39
130 131 1.546029 CATCTCTTCCGGTGACTCACA 59.454 52.381 11.34 0.00 35.86 3.58
211 212 7.383300 GTGGAATATTTATTGGCTCTTGCATTC 59.617 37.037 0.00 0.00 41.91 2.67
280 282 7.136289 TCACTTTACGTCAAAATCAATACCC 57.864 36.000 0.00 0.00 0.00 3.69
455 638 5.246981 AGGGACAATTTCTCAGTCAATCA 57.753 39.130 0.00 0.00 34.04 2.57
458 641 9.581289 TTTATTAAGGGACAATTTCTCAGTCAA 57.419 29.630 0.00 0.00 34.04 3.18
557 740 2.479837 TGCTCTTTACACCGACACAAG 58.520 47.619 0.00 0.00 0.00 3.16
690 873 9.660180 GAGGAACTATTAATTTCTGAGTCAGTT 57.340 33.333 19.53 9.56 41.55 3.16
810 993 8.975410 ACAATGTTGATATATGTTGCATATGC 57.025 30.769 21.09 21.09 42.50 3.14
909 1092 7.003402 TGCCAAAGCTCCTTTTATTTATTGT 57.997 32.000 0.00 0.00 40.80 2.71
967 1150 3.138304 GCATGTGACTTGTGTAGGTTCA 58.862 45.455 0.00 0.00 0.00 3.18
1008 1191 5.048013 CCTCCTTGTGTTTCCTTGGTTTATC 60.048 44.000 0.00 0.00 0.00 1.75
1054 1237 1.661341 GCAAAGAGCATCACGAGGAT 58.339 50.000 0.00 0.00 44.79 3.24
1066 1249 5.059833 GGATGATAGGGTACAAGCAAAGAG 58.940 45.833 0.00 0.00 0.00 2.85
1068 1251 4.137543 GGGATGATAGGGTACAAGCAAAG 58.862 47.826 0.00 0.00 0.00 2.77
1090 1273 3.179265 CTTACCTCGTGCGTGGCG 61.179 66.667 11.90 0.00 32.46 5.69
1095 1278 0.944311 AACAGTGCTTACCTCGTGCG 60.944 55.000 0.00 0.00 0.00 5.34
1221 1405 2.110578 TGCAACTAGGCTCAGAGCATA 58.889 47.619 24.09 19.85 44.75 3.14
1355 1539 4.327982 AGATTCATTCGACGTCATGGAT 57.672 40.909 17.16 12.54 0.00 3.41
1431 1615 8.984891 TTATTCCGTCTACATAAAAAGAACGA 57.015 30.769 0.00 0.00 0.00 3.85
1469 1655 5.622914 GCTGTAGATGCCACAAATCACATTT 60.623 40.000 0.00 0.00 0.00 2.32
1479 1665 1.078214 GCCTGCTGTAGATGCCACA 60.078 57.895 0.00 0.00 0.00 4.17
1489 1675 0.886490 CAAGAAAGACGGCCTGCTGT 60.886 55.000 2.65 2.65 38.41 4.40
1491 1677 1.968540 GCAAGAAAGACGGCCTGCT 60.969 57.895 0.00 0.00 0.00 4.24
1496 1682 0.169009 GGTCATGCAAGAAAGACGGC 59.831 55.000 0.00 0.00 31.93 5.68
1499 1685 4.574599 AACTTGGTCATGCAAGAAAGAC 57.425 40.909 16.95 4.70 33.06 3.01
1623 1824 2.819608 CACAATGTTGAGGGTTCGGATT 59.180 45.455 0.00 0.00 0.00 3.01
1686 1887 9.325198 GGAGTTATTGACATTTTGGTTTTTCTT 57.675 29.630 0.00 0.00 0.00 2.52
1743 1945 5.611128 ACAGAGATCATATCAAGTGCACT 57.389 39.130 15.25 15.25 0.00 4.40
1792 1995 0.318762 TTGGCGCCCATTTTGTAACC 59.681 50.000 26.77 0.00 31.53 2.85
1795 1998 1.181741 TGCTTGGCGCCCATTTTGTA 61.182 50.000 26.77 0.00 38.05 2.41
1846 2049 5.880332 GCCAGTTCAATCAATGGAGTAACTA 59.120 40.000 0.00 0.00 34.60 2.24
1918 2121 1.522258 CACACAACATTTTCGCTTGGC 59.478 47.619 0.00 0.00 0.00 4.52
1968 2175 3.703556 TGATGTCTGGAGAAGAGTGATCC 59.296 47.826 0.00 0.00 34.84 3.36
2072 2279 1.931635 TATTGGAACCAAACAGGCCC 58.068 50.000 10.36 0.00 43.14 5.80
2073 2280 2.897326 ACTTATTGGAACCAAACAGGCC 59.103 45.455 10.36 0.00 43.14 5.19
2074 2281 3.572255 TGACTTATTGGAACCAAACAGGC 59.428 43.478 10.36 11.26 43.14 4.85
2075 2282 4.827284 AGTGACTTATTGGAACCAAACAGG 59.173 41.667 10.36 5.07 45.67 4.00
2076 2283 6.039270 TCAAGTGACTTATTGGAACCAAACAG 59.961 38.462 10.36 11.01 39.55 3.16
2077 2284 5.888724 TCAAGTGACTTATTGGAACCAAACA 59.111 36.000 10.36 0.00 39.55 2.83
2078 2285 6.206498 GTCAAGTGACTTATTGGAACCAAAC 58.794 40.000 10.36 3.44 41.65 2.93
2079 2286 6.385649 GTCAAGTGACTTATTGGAACCAAA 57.614 37.500 10.36 0.00 41.65 3.28
2109 2316 4.272748 GTCACTGGTTTTAAGTCACCTGAC 59.727 45.833 11.87 0.00 45.08 3.51
2110 2317 4.163458 AGTCACTGGTTTTAAGTCACCTGA 59.837 41.667 11.87 3.02 35.95 3.86
2111 2318 4.451900 AGTCACTGGTTTTAAGTCACCTG 58.548 43.478 6.12 6.12 37.86 4.00
2112 2319 4.772886 AGTCACTGGTTTTAAGTCACCT 57.227 40.909 3.10 0.00 33.76 4.00
2113 2320 8.611654 TTATAAGTCACTGGTTTTAAGTCACC 57.388 34.615 0.00 0.00 0.00 4.02
2114 2321 9.269453 ACTTATAAGTCACTGGTTTTAAGTCAC 57.731 33.333 12.50 0.00 32.86 3.67
2131 2338 7.834181 ACAACCAAATAGGCATGACTTATAAGT 59.166 33.333 18.05 18.05 43.14 2.24
2132 2339 8.225603 ACAACCAAATAGGCATGACTTATAAG 57.774 34.615 6.27 11.05 43.14 1.73
2133 2340 7.831690 TGACAACCAAATAGGCATGACTTATAA 59.168 33.333 6.27 0.00 43.14 0.98
2134 2341 7.282224 GTGACAACCAAATAGGCATGACTTATA 59.718 37.037 6.27 0.00 43.14 0.98
2135 2342 6.095440 GTGACAACCAAATAGGCATGACTTAT 59.905 38.462 6.27 0.00 43.14 1.73
2136 2343 5.414454 GTGACAACCAAATAGGCATGACTTA 59.586 40.000 6.27 0.00 43.14 2.24
2137 2344 4.218417 GTGACAACCAAATAGGCATGACTT 59.782 41.667 6.27 0.00 43.14 3.01
2138 2345 3.758554 GTGACAACCAAATAGGCATGACT 59.241 43.478 6.20 6.20 43.14 3.41
2139 2346 3.119495 GGTGACAACCAAATAGGCATGAC 60.119 47.826 0.00 0.00 46.75 3.06
2140 2347 3.088532 GGTGACAACCAAATAGGCATGA 58.911 45.455 0.00 0.00 46.75 3.07
2141 2348 3.508744 GGTGACAACCAAATAGGCATG 57.491 47.619 0.00 0.00 46.75 4.06
2164 2371 5.783875 AGGTGTGGTTAGGTGACTTATAAGT 59.216 40.000 18.05 18.05 43.67 2.24
2165 2372 6.295719 AGGTGTGGTTAGGTGACTTATAAG 57.704 41.667 11.05 11.05 43.67 1.73
2166 2373 6.691255 AAGGTGTGGTTAGGTGACTTATAA 57.309 37.500 0.00 0.00 43.67 0.98
2167 2374 6.296030 GGAAAGGTGTGGTTAGGTGACTTATA 60.296 42.308 0.00 0.00 43.67 0.98
2168 2375 5.514310 GGAAAGGTGTGGTTAGGTGACTTAT 60.514 44.000 0.00 0.00 43.67 1.73
2169 2376 4.202388 GGAAAGGTGTGGTTAGGTGACTTA 60.202 45.833 0.00 0.00 43.67 2.24
2170 2377 3.434596 GGAAAGGTGTGGTTAGGTGACTT 60.435 47.826 0.00 0.00 43.67 3.01
2172 2379 2.158726 TGGAAAGGTGTGGTTAGGTGAC 60.159 50.000 0.00 0.00 0.00 3.67
2173 2380 2.128535 TGGAAAGGTGTGGTTAGGTGA 58.871 47.619 0.00 0.00 0.00 4.02
2174 2381 2.227194 GTGGAAAGGTGTGGTTAGGTG 58.773 52.381 0.00 0.00 0.00 4.00
2175 2382 1.144298 GGTGGAAAGGTGTGGTTAGGT 59.856 52.381 0.00 0.00 0.00 3.08
2176 2383 1.423921 AGGTGGAAAGGTGTGGTTAGG 59.576 52.381 0.00 0.00 0.00 2.69
2177 2384 2.884639 CAAGGTGGAAAGGTGTGGTTAG 59.115 50.000 0.00 0.00 0.00 2.34
2178 2385 2.938838 CAAGGTGGAAAGGTGTGGTTA 58.061 47.619 0.00 0.00 0.00 2.85
2179 2386 1.775385 CAAGGTGGAAAGGTGTGGTT 58.225 50.000 0.00 0.00 0.00 3.67
2180 2387 0.755327 GCAAGGTGGAAAGGTGTGGT 60.755 55.000 0.00 0.00 0.00 4.16
2181 2388 0.468029 AGCAAGGTGGAAAGGTGTGG 60.468 55.000 0.00 0.00 0.00 4.17
2182 2389 1.402787 AAGCAAGGTGGAAAGGTGTG 58.597 50.000 0.00 0.00 0.00 3.82
2183 2390 2.159179 AAAGCAAGGTGGAAAGGTGT 57.841 45.000 0.00 0.00 0.00 4.16
2184 2391 3.541996 AAAAAGCAAGGTGGAAAGGTG 57.458 42.857 0.00 0.00 0.00 4.00
2201 2408 7.562088 GTGGGTCCCATCACCTTTATATAAAAA 59.438 37.037 15.49 0.00 35.28 1.94
2202 2409 7.064229 GTGGGTCCCATCACCTTTATATAAAA 58.936 38.462 15.49 0.00 35.28 1.52
2203 2410 6.160636 TGTGGGTCCCATCACCTTTATATAAA 59.839 38.462 15.49 7.66 35.28 1.40
2204 2411 5.672653 TGTGGGTCCCATCACCTTTATATAA 59.327 40.000 15.49 0.00 35.28 0.98
2205 2412 5.072600 GTGTGGGTCCCATCACCTTTATATA 59.927 44.000 23.13 0.00 35.28 0.86
2206 2413 4.051478 TGTGGGTCCCATCACCTTTATAT 58.949 43.478 15.49 0.00 35.28 0.86
2207 2414 3.201266 GTGTGGGTCCCATCACCTTTATA 59.799 47.826 23.13 0.00 35.28 0.98
2208 2415 2.025321 GTGTGGGTCCCATCACCTTTAT 60.025 50.000 23.13 0.00 35.28 1.40
2209 2416 1.353022 GTGTGGGTCCCATCACCTTTA 59.647 52.381 23.13 0.00 35.28 1.85
2210 2417 0.112412 GTGTGGGTCCCATCACCTTT 59.888 55.000 23.13 0.00 35.28 3.11
2211 2418 1.065410 TGTGTGGGTCCCATCACCTT 61.065 55.000 27.23 0.00 35.92 3.50
2212 2419 1.065410 TTGTGTGGGTCCCATCACCT 61.065 55.000 27.23 0.00 35.92 4.00
2213 2420 0.178975 TTTGTGTGGGTCCCATCACC 60.179 55.000 27.23 13.18 35.92 4.02
2214 2421 1.613437 CTTTTGTGTGGGTCCCATCAC 59.387 52.381 25.25 25.25 35.28 3.06
2215 2422 1.480312 CCTTTTGTGTGGGTCCCATCA 60.480 52.381 15.49 13.84 35.28 3.07
2216 2423 1.256812 CCTTTTGTGTGGGTCCCATC 58.743 55.000 15.49 11.28 35.28 3.51
2217 2424 0.178935 CCCTTTTGTGTGGGTCCCAT 60.179 55.000 15.49 0.00 38.65 4.00
2218 2425 1.231641 CCCTTTTGTGTGGGTCCCA 59.768 57.895 6.47 6.47 38.65 4.37
2219 2426 1.533033 CCCCTTTTGTGTGGGTCCC 60.533 63.158 0.00 0.00 41.82 4.46
2220 2427 1.533033 CCCCCTTTTGTGTGGGTCC 60.533 63.158 0.00 0.00 41.82 4.46
2221 2428 4.191243 CCCCCTTTTGTGTGGGTC 57.809 61.111 0.00 0.00 41.82 4.46
2222 2429 3.446050 ACCCCCTTTTGTGTGGGT 58.554 55.556 0.00 0.00 46.50 4.51
2223 2430 1.112916 GTCACCCCCTTTTGTGTGGG 61.113 60.000 0.00 0.00 44.03 4.61
2224 2431 0.106217 AGTCACCCCCTTTTGTGTGG 60.106 55.000 0.00 0.00 34.14 4.17
2225 2432 1.775385 AAGTCACCCCCTTTTGTGTG 58.225 50.000 0.00 0.00 34.14 3.82
2226 2433 3.895704 ATAAGTCACCCCCTTTTGTGT 57.104 42.857 0.00 0.00 34.14 3.72
2227 2434 5.321927 ACTTATAAGTCACCCCCTTTTGTG 58.678 41.667 12.50 0.00 32.86 3.33
2228 2435 5.594199 ACTTATAAGTCACCCCCTTTTGT 57.406 39.130 12.50 0.00 32.86 2.83
2229 2436 6.911250 AAACTTATAAGTCACCCCCTTTTG 57.089 37.500 18.28 0.00 38.57 2.44
2230 2437 9.085645 CTTAAAACTTATAAGTCACCCCCTTTT 57.914 33.333 18.28 13.78 38.57 2.27
2231 2438 8.229605 ACTTAAAACTTATAAGTCACCCCCTTT 58.770 33.333 18.28 14.40 38.85 3.11
2232 2439 7.762610 ACTTAAAACTTATAAGTCACCCCCTT 58.237 34.615 18.28 4.77 38.85 3.95
2233 2440 7.339177 ACTTAAAACTTATAAGTCACCCCCT 57.661 36.000 18.28 0.00 38.85 4.79
2234 2441 9.170734 CTAACTTAAAACTTATAAGTCACCCCC 57.829 37.037 18.28 0.00 41.49 5.40
2235 2442 9.170734 CCTAACTTAAAACTTATAAGTCACCCC 57.829 37.037 18.28 0.00 41.49 4.95
2236 2443 9.170734 CCCTAACTTAAAACTTATAAGTCACCC 57.829 37.037 18.28 0.00 41.49 4.61
2237 2444 9.730705 ACCCTAACTTAAAACTTATAAGTCACC 57.269 33.333 18.28 0.00 41.49 4.02
2243 2450 9.796180 TGCTTCACCCTAACTTAAAACTTATAA 57.204 29.630 0.00 0.00 0.00 0.98
2244 2451 9.796180 TTGCTTCACCCTAACTTAAAACTTATA 57.204 29.630 0.00 0.00 0.00 0.98
2245 2452 8.573885 GTTGCTTCACCCTAACTTAAAACTTAT 58.426 33.333 0.00 0.00 0.00 1.73
2246 2453 7.776500 AGTTGCTTCACCCTAACTTAAAACTTA 59.224 33.333 0.00 0.00 29.65 2.24
2247 2454 6.605995 AGTTGCTTCACCCTAACTTAAAACTT 59.394 34.615 0.00 0.00 29.65 2.66
2248 2455 6.127101 AGTTGCTTCACCCTAACTTAAAACT 58.873 36.000 0.00 0.00 29.65 2.66
2249 2456 6.387041 AGTTGCTTCACCCTAACTTAAAAC 57.613 37.500 0.00 0.00 29.65 2.43
2250 2457 8.573035 CATAAGTTGCTTCACCCTAACTTAAAA 58.427 33.333 11.09 0.00 44.18 1.52
2251 2458 7.940137 TCATAAGTTGCTTCACCCTAACTTAAA 59.060 33.333 11.09 2.80 44.18 1.52
2252 2459 7.389607 GTCATAAGTTGCTTCACCCTAACTTAA 59.610 37.037 11.09 0.00 44.18 1.85
2253 2460 6.877322 GTCATAAGTTGCTTCACCCTAACTTA 59.123 38.462 9.88 9.88 44.72 2.24
2254 2461 5.705905 GTCATAAGTTGCTTCACCCTAACTT 59.294 40.000 0.00 0.00 43.48 2.66
2255 2462 5.013183 AGTCATAAGTTGCTTCACCCTAACT 59.987 40.000 0.00 0.00 35.06 2.24
2256 2463 5.246307 AGTCATAAGTTGCTTCACCCTAAC 58.754 41.667 0.00 0.00 0.00 2.34
2257 2464 5.499004 AGTCATAAGTTGCTTCACCCTAA 57.501 39.130 0.00 0.00 0.00 2.69
2258 2465 5.499004 AAGTCATAAGTTGCTTCACCCTA 57.501 39.130 0.00 0.00 0.00 3.53
2259 2466 4.373156 AAGTCATAAGTTGCTTCACCCT 57.627 40.909 0.00 0.00 0.00 4.34
2260 2467 7.859325 TTATAAGTCATAAGTTGCTTCACCC 57.141 36.000 0.00 0.00 0.00 4.61
2272 2479 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
2273 2480 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
2274 2481 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
2275 2482 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
2280 2487 8.269317 CCAACTTATAAGTCACCCCAACTTATA 58.731 37.037 18.28 10.26 44.28 0.98
2281 2488 7.116736 CCAACTTATAAGTCACCCCAACTTAT 58.883 38.462 18.28 11.86 46.48 1.73
2282 2489 6.478129 CCAACTTATAAGTCACCCCAACTTA 58.522 40.000 18.28 0.00 41.91 2.24
2283 2490 5.321927 CCAACTTATAAGTCACCCCAACTT 58.678 41.667 18.28 0.00 38.57 2.66
2284 2491 4.263771 CCCAACTTATAAGTCACCCCAACT 60.264 45.833 18.28 0.00 38.57 3.16
2285 2492 4.014406 CCCAACTTATAAGTCACCCCAAC 58.986 47.826 18.28 0.00 38.57 3.77
2286 2493 3.658705 ACCCAACTTATAAGTCACCCCAA 59.341 43.478 18.28 0.00 38.57 4.12
2287 2494 3.261962 ACCCAACTTATAAGTCACCCCA 58.738 45.455 18.28 0.00 38.57 4.96
2288 2495 3.522343 AGACCCAACTTATAAGTCACCCC 59.478 47.826 18.28 8.46 38.57 4.95
2289 2496 4.019591 ACAGACCCAACTTATAAGTCACCC 60.020 45.833 18.28 7.52 38.57 4.61
2290 2497 5.161943 ACAGACCCAACTTATAAGTCACC 57.838 43.478 18.28 6.90 38.57 4.02
2291 2498 6.072673 CCAAACAGACCCAACTTATAAGTCAC 60.073 42.308 18.28 8.47 38.57 3.67
2292 2499 6.001460 CCAAACAGACCCAACTTATAAGTCA 58.999 40.000 18.28 0.00 38.57 3.41
2293 2500 6.002082 ACCAAACAGACCCAACTTATAAGTC 58.998 40.000 18.28 6.18 38.57 3.01
2294 2501 5.948842 ACCAAACAGACCCAACTTATAAGT 58.051 37.500 12.50 12.50 42.04 2.24
2295 2502 7.989416 TTACCAAACAGACCCAACTTATAAG 57.011 36.000 11.05 11.05 0.00 1.73
2296 2503 8.763984 TTTTACCAAACAGACCCAACTTATAA 57.236 30.769 0.00 0.00 0.00 0.98
2297 2504 8.943594 ATTTTACCAAACAGACCCAACTTATA 57.056 30.769 0.00 0.00 0.00 0.98
2298 2505 7.849322 ATTTTACCAAACAGACCCAACTTAT 57.151 32.000 0.00 0.00 0.00 1.73
2299 2506 8.763984 TTATTTTACCAAACAGACCCAACTTA 57.236 30.769 0.00 0.00 0.00 2.24
2300 2507 7.663043 TTATTTTACCAAACAGACCCAACTT 57.337 32.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.