>input_sequence_83764
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--------------------------------------------------------------ATGGCACCGATAAACCAA
GGAAACACAAGGAGGGCCAGGTCCATTGCTTTCCTTATCCTCGTGATGCTCTTTGCTTGTACCCTATCATCCCGCCACGC
ACGAGGTAAGCAC-TGTTTGAAAGGGCTAATCTAGAATAATCTTGTCTTGTTGAATTGCTAATGATGAATACAACTTTAT
TGCATCTGCAGGTGGAGAGCCATATTGCATAGGTCCGATACTAGTATGCTCTGAGCCTAGTTGCATGGAAGAATGCAACT
TAATAGACAAGGGTCTTCATTCCTTCTATTGCAACCACCTTGGACAATGTTGTTGTTGGCCTCTATAG------------
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---------------------------------------------------
>chr6A_1_TraesCS6A01G417000
TTGGATTTGGCAAAGAATGAAACAAAGTTTGATCATGAATGAGTAGTGAATGGTTTTGCTTTTCTTATGGGCACAAATCC
ATCAATTTGAGAGTCATTGTTAAAGCGAATAGAGGGTTAGGACACCAGTATGTGAGTCACCGGAAGAGATGGACGGAAAT
AATAAGAGTATTAATCGAGATACTATGCCAACATTAATTTAGAAGATACATGAATGCAAGAGCCAATAAATATTCCACAT
TGAGTGAGAAATAATCCTCAAGAA-AATATACAGATTTGTGGGGTATTGATTTTGACGTAAAGTGATATCAGAGTAATAA
TACAAGAATATATAGTGTAAATGGAACACAAATGCAAGATATATCAACATTAA---------------------------
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--------------------------------------------------------------------------TTAAGT
GGATAATTAATGCAGGAAGCCATATGAGAAACATCTATGCAAATATTATTGTGCCTCGATTGAGAAATAACTATTTCTGA
TTGACTGAGAAATTGTCCCTTAATAAAATATAGAATATAATGCTTGGCATTTATTTTAACATAACAAGATATCATGATAT
CAATACCAGTATTATATATCTTGTGTCGGTGTAAAGAGCATACAAATGCAAAATATATCAACATTAGTTAGTAGATAATA
AATGCAAGAAATGATACTAGCAACATCTATCAAAGATATGATTGTCCTTTGATTAAAGAAATAACCATTATAAACTGACT
CAGAAATTAATAGTTCCTCAATAAATGCAAAATATGAAGATTTGTGTGGCATTTCTTTTGATGTAACAAGATATCATGAT
ATAAAATACAATGCATATAGTGTAAATACAATGCATATGCAACATATATCAACATTGTTTTAGTAAATAACAAATATAAT
AAACTATATGGGAAATATTTGTGCAAGATATGGATGTGCCTCTATATAAAGACAATAAATAAAAGGAGCTTTGGCAGCAA
AGCAACACACCATAAGAACACAAGGAAGATGAACCTACACAAGTCACATGCCTCTTCTCCTCATGGCACCGATAAACCAA
GGAAACACAAGGAGGGCCAGGTCCATTGCTTTCCTTATCCTCGTGATGCTCTTTGCTTGTACCCTATCATCCCGCCACGC
ACGAGGTAAGCAC-TGTTTGAAAGGGCTAATCTAGAATAATCTTGTCTTGTTGAATTGCTAATGATGAATACAACTTTAT
TGCATCTGCAGGTGGAGAGCCATATTGCATAGGTCCGATACTAGTATGCTCTGAGCCTAGTTGCATGGAAGAATGCAACT
TAATAGACAAGGGTCTTCATTCCTTCTATTGCAACCACCTTGGACAATGTTGTTGTTGGCCTCTATAGTTTGATTGGACA
CAACCATTTTGGTTATGGATCCATGACGTCGAATGAATCTTGATCGTGCTTGTGTGATGTAATCTCGGTGAATAAACTCC
TTGAATGGAATGAGTCGTTC--TTTTTATGTAGACGGAATAAAATGTTCCTTTAAAATGTGATTTGTGGCATCTACAGCA
GGCCGTCTTTCTT-----GCATGACCAAGTTTTCAATCCAACCCAATGATTTTAATGTATGAATAATGTTCTTC-----C
TATA-TTTCATTGTATGGATCTATTTTCCTATAGGAATCAATTC---TAAATTTCTGCC-AAAAATCCGAACCCTCAACA
TTGTGGCCATGGTTGCCCTAGAAGTGTTGTGCTGCCTCTCGGACGCAAGAAAAACCAAAA-TGTCAATAACTCCATGAAA
CATAGAGTTGGCACCATAGCATCCAGTGCAC-TTGATATGATCTCTGTAGAAATTAAGTGTGATGAAAACAGTTGGTTAC
AAAATGGGCGCCAAGCAGAAGCTTTGTAGAACCCCATCGAGCTTGGCTTAGTTACTCCATTGATTGAACTGGCTTACATA
CACTCAATGGTGGTTGGGTATAATAATTGTGGTTACCACCG----CCAAGCGAAAATGTTGTGTGGAACAATGGTCTACC
CAAACCAACACTCAGGATCACTCTTCTCCAGACATCATTTATGGGGATCGATGCATTGCAGGTAAAGATTTCATTGCACG
AATAGTTTATTAATGGTTAGAAATGCTAACTAAACTTAGGGCCTGTTTGGTTCCAATAAGTCACTTGACTTATAAGTCAG
GTGACTTAAAACCAGTGACTTATAAGTCATGCCTATTTGGTTGTCACCTGACTTATAAGTCACCTAACCACACCTTTCCA
CCTTGCTTTTTTATATAAAGGTGATGGGACCCACACAAAAGGGGGTGACTTATAAGTTTTAAGTTAGGGTGAAGCAACTT
ATGACTTATAAGTTGGGGTGACTTATAAGTTGGGTCTGTTTGGTAAAATAA
>chr6D_1
TTGGATTTAGCGAAGAATGAAACAGAGTTTGATCATGAATGAGTAGTGAATGGTTTTGCTTTTCTTATGGGCACAAATCT
ATCAATTTGAGAGTCATTGTTAAAGCGAATAGAGGGTTAGGACACCAATACGTGAGTCACCGGAAGAGATGGACGGAAAT
AATAAGAGTATTAATCAAGATACTATGCCAACATTAATTTAGAAGATACATAAATGCAAGAGCCAATAAATATTCCACAT
TGAGTGAGAAATAATCCTCAAGAA-AATATACAGATTTGTGCGGTATTGATTTTGACGTAAAGCGATATCAGGGTAATAA
TACAAGAATATATGGTGTAAATGGAACACAAATGCAAGATATATCAACATCAGTTTTTTTTACCATAAAACAGTAGGGTA
AAACCCTACTGTGTGTCATTTTCATTATAATGAATAAAAGTGCATAGTACAATGGTTGTTGGGAGAGCAACCAGAGTGGA
AGAGTTTACAGTAAAGAAAAGAAAAGATAAAATACAGAATTATTCAAATGTTGTCTATCCAATATCAACATCAGTTAAGT
GGATAATTAATGCAGGAAGCCATATGAGAAACATCTATGCAAATATTATTGTGCCTCCATTGAGAAATAACTATTTCAGA
CTTACTGAGAAATTTTCCCTTAATAAAATATAGAATATAATGCTTGGCATTCATTTTAACATAACAAGATATCATGATAT
CAATACTAGTATTATATATGTTGTGTCGGTGTAAAGAGCATACAAATGCAAAATATATCAACATTAGTTAGTAGATAATA
AATGCAAGAAATGATACGAGCAACATCTATCAAAGATATGATTGTCCTTTGATTAAAGAAATAATCATTATAGACTGACT
CGGAAATTAATAGTTGCTCAATAAATATAGACTAGGAAGATTTGTGTGGCATTTCTTTTGACGTAACAAGATATCATGAT
ATAAAATACAATGCATATAGTGTAAATACAATACATATGCAACATATATCAACATAAATTTACTAAATAACAAATATAAT
AAACCATATGGGAAATATTTGTGCAAGATATGGATGTGTCTCTATATAAAGCCAACAAATAAAAGGAGCTTTGGCAGCAA
AGCAGCACACCATAAGAACACAAGGAAGACGAACCTACACAAGTCACATGCCTCTTCTCCTCATGGCACCCATAAAGCAA
GGAAACACAAGGAGGGCCAAGTCCATTGCTTTCCTTGTCCTCGTGATGGTGTTTGCTTGTACCCTATCATCCTGCCATGC
ACGAGGTAAGCACTTGTTTGAAAGGGCTAATCTAGAATAATCTTGTCTTGTTGAATTGCTAACGATGAATACAACTTTAT
TGCATCTGCAGGTGGAGAGCCATATTGCATAGGTCCGATACTAGGATGCTCTGAGCCTAGTTGCATGGAAGCATGTAACT
TAATAGACAAGGGTCTTCATTCCTTCTATTGCAACCACCTTGGACAATGTTGTTGTTGGCCTCTATAGTTTGATTGGACA
CAACCATTTTGGTTATGGCTCCATAACGCCGAATGAATCTTGATCGTGCTTGTGTGATGTAATTTCGGTGAATAAACTCC
TTGAATGGAATGAGCCATTCTTTTTTTATGTAGACGGAATAAAATGTTCCTTTAGAATGTGATTAGTGGCATCTGTTGCA
GACCATCTTTCTT-----GCATGACCAAGTTTTCAATCCAACCCAATGATTTTAAAATATGAATAATGTTGTTC-----C
TAGA-TTTCATTGTATGGGTCTATTTTCCTATAGGAATCAATTC---TAAATTTCCGCC-AAA-ATCCGAGCCCTCAACA
TTGTGGCCATGGTTACCCTAGAAGTGTTGTGCTGCCTCTCGGATGCGAGAAAAACCAAAA-CGTCAATAACTCCATGAAA
CATAGAGTTGGCACCATAGCATCCGGTGCAATTTGATATGATCTCTGAAGAAATTAAGTGTGACAAAAACAGTTAGTAAC
AAAATGGGCGCCAAGCAGAAGCTTTGTAGAACCCCATCGAGCTTGGCTCAGTTACTCCATTGATTGAACTGGCTTACATA
CACTCGATGGTGGTTGGGTATAATCATTATGGTTACCACCA----CCAAGCGAAAATGTTGTGTGGAACAATGGTCTACC
CAAACCAACACTCAAGATCACTCTTCTCCATACATCATTTATGGGGATCGATGCATTGTAGGTAAAGCTTTCATTGCGCA
AACATTTTATTAATGGTTAGAAATGCTAACTAAACTTA------------------------------------------
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---------------------------------------------------
>chr6A_225
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----------------------------------------------------------------AATAAATATTCCACAT
TGAGTGAGAATTAGTCCTCATGAAAAAGATAAAGATATGTCCGGGATTGGTTTTGACGTAAAAATATATAATCATAATAA
TACAAGAATACATAGTGTAAAGGGAAAACAAATGCAAGATATACCAACATCGAT--------------------------
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--------------------------------------------------------------------------TAAA-T
GGATGATTCATGAAAGAAGCCATATGAGAAACATCTATGCAAATATTATTGTTCCACGATTGAGAAATAATTATTTAAGA
CCGACTGAGAAATAGTCCCTTAATAAAATATACAATTTAATGCGTGGCACTAATTTTAAAGTAACGAGATATCATGATAT
CAATACCAGTATTATATATGTA------GTGTAAAGAGAATAAAAGTGCAAAACTTATCAACATTAGTTAGTAGATAATA
AATGCAAGAAATGA------CAACATCTATCAAAGATATGATTGTCCTTTGATG-AAGAAATAACCATTACATACTGACT
AAG--ATTAATAGTTCCTCAATAAATACAAAATATGATGATTTGTGTCCCATTGCTTTTGGCGTAACAAGATATCATGAT
ATAAAATACAATACAAATAGTGTAAAGATAGTACGCATGCAACATATATCAACATTAATTTACTAAATAACAAATTTAAT
AAACCATATGGGAAATGTTTGTTTAAGATATGGCTGTGCCTCTATATAAAGCCAACAAACACAGGGAGCTTTGGCAGGAA
AGAAACACACTATAAGAACACAAGGAGCACGAACCTACACAAGTCACCCGCCTCTTCTCCTCATGGCACCCGTAAATCGA
GGCAACACAAGGAGGGCTAGGTCCATTGCTTTCCTTGTCCTTGTGATGGTGTTTGCTTGTACCATGTCATCCTGCCATGC
ACGAGGTAAGAAA-TGTTTGAAAGTGCTAATCTAGAATGATCTTGTCTTGTTGAATTGCTAATGATGAGTACAATGTTAT
TGCATCTACAGGTGGGGAGCCGTATTGCATAAATTCTCCACTAGGATGCTCTGAGCCTAGTTGCATGGAGGAATGCAATT
TAATAGACAAGGGTCTTCATTCCTTCTATTGTAACCACATTGGGCAATGTTGTTGTTGGCCCCTATAGTTTGATCGGACA
CAACCATTTTGGTTATGGCTCCATGACGTCTAATGAATCTTGATTGTGATTGTGTGATGCAATCTCGGGGAATAAACTCC
TTGCATGGAATGCGCATCTCTA-TTTGATGTAGATGGAATAATATGTTCCTTTAGAATGTGATTAGTGGCATCTGCTGCA
AACCATCTTTCTTTTCTTGTATGACCAACTTTTCAATTCAACTCAATGATTTAAAAGTATGAAT-AAACAATCTTTCTAC
TTGATTTTCATTGTATGGGTCTATTT-CCTATAGGAATCAATTCCTCTAAATTTCTTCCAAAA-ACCCGAACCCTCAACA
TTGTGTCCATGGTAGCCCTTGGAACATTGTGCTGCTTATCGGACACGAGAAAACCCAAAAATATCAATAAATCCATGAAA
CATGGAATTGGTACCATACA------TGCAATCTGATATGAC--CTGAAAAAATTCGGTGTGACGAAAACTATTAGTAAC
AAAAGGGGTGCCAAGCAGAAGCTTTCTAGAACTCACTA-AGCTCGGCTCAGTTACTCCATTGCTTGAATTGGCATACATA
CACTCAATGGTTGTTGGGTATAATCAATGTGGTTACCACCAACCACCAAGCCAAAACGCTGTGTGAAACAATGGTCCACC
CAAACA----------ATCACTCTTATCGAGACATCATTTATGCGGATCAATGCATTGCGGGTAAAGCTTTCATTGAGCA
AACAATTTATTGAAGGTTAGAAATGCTAACTAAAC---------------------------------------------
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---------------------------------------------------
>chr6D_225
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----------------------------------------------------------------AATAAATATTCCACAT
TGAGTGAGAAATAGTCCTCAAGAAAAAGATAAAGATATGTGCGGGATTGGTTTTGACATAAAAATATATCATGGTAATAA
TACAAAAATACATAGTGTTAAGGGAAAACAAATGCAAGATATACCAACATCAA---------------------------
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--------------------------------------------------------------------------TAAA-T
GGATGGTTCATGCAAGAAGCCATATGAGAAACATCTATGGAAATATTATTGTGCCACGATCGAGCAATAACTATTTCAGA
CTGAGTGAGAAATAGTCCGTTAATAAAATATACCATATAATGCGTGGCACTATTTTTAAAGTAACAAGATATCATGATAT
CAGTACTAGTATTATATATTAGTGTAC--------GAGAATAAAAATGCAAAACTTATCAACATTAGTTAGTAGGTAATA
AATGCAAGAAATGATACGAGCAACATCTATCAAAGATATGATTGTCCTTTGATGGTG--AATAACCATTACATACTGACT
AAGAAATTGATAGTTCCTCAATAAATGCAAAATATGAAGATTTGTGTGCCATTGCTTTTCGTGTAACAAGATATCATGAT
ATAAAATACAATACAAATAGTGCAAAGTTAATACATATGCAACATATATCGATATTAATTTACTAAATAACAAATTTAAT
AAACCATATGGGAAACATTTGTTTAAGATAT--ATGTGCCTCCATATAAAGCCAATAATCAGAGGGAGCTTTGGCAGCAA
AGCAACACACCATAAGAACACAAGGAACACGAACCTACACAAGTCACATGCCTCTTCAGCTCATGGCACCCATAAACCAA
TGCAACACAAGGAGGGTCAGGTTCATTGCTTTGCTTGTCCTTGTGATGGTGTTTTCCTGTACCATGTCATCCTGCCATGC
ATGAGGTAAGAAA-TGTTTGGAAGTGCTAATCTAGAATAATCTTGTCTGGTTAAATTGCTAATGATGAGTATAATGGTAT
TGCATCTGCAGGTGGAGAGCCGTATTGCATAAATTCGCCACTAGGATGCTCTGAGCCTAGTTGCATGGGAGAATGCAATT
TAATAGACAAGGGTCTTCATTCCTTCTATTGTAACCACATTAGACAATGTTGTTGTTGGCCCCTATAGTTTCATCGGACA
CAACCATTTTGGTTATGGCTCCGTGACGTCTAATAAATCTTGATTGTGCTTGTCTGATGCAATCTCGGTGAATAAACTCC
TTGCATGGAATGTGCCGTTCTA-TTTGATGTAGACGGAATAAAATGTTCCTTTAGAATGTGATTACTGGCATCTGTTGTA
GACCATCTTTCTT-----GTATGACCAACTTTTCAATTCAACTCAATGATTTTAAAGTATGACTAAAAAAATCTTTTTGC
TAGA-TTTCATTGTATGGGTCTATTTTCCTATAGGAATCAATTCCTCTAAATTTACTCCAAAA-ATCTGAACCCTCAACA
TTCTGTCCATGGTAGCCCTCGGAACGATGTGCTGCCTATCGGACACGAGAAAACCCCAAAATGCCAATAACTCCATGATA
CAGGGATTTGGTACCATACA------TGCACTCTGATATGAT--TTGAATAAATTAA-TGTGATGAAAACTGTTAGTATC
AAAATGGGCGCCAAGCAGAAGCTTT-------------------------------------------------------
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---------------------------------------------------
>SNPs
--------S--S------------S------------------------------------------------------S
-----------------------------------------------S--S-----------------------------
----------------S----------------------------------S----------------------------
-----------------------------------------S---------------------S--------S-------
--------------------------------------------------S-----------------------------
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-----------------------------------------------------------------------------S--
S--------------------------------------------------S----------------------------
-------------------S------------------------------------------------------------
-----------------S------------------------------------------------------S-------
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--------------------------------S-----------------------SS----S-----------------
----S----------------------------------------------S----------------------------
-----------------------------S----------------------------------------S---------
------------------------------------S-----------S-S---------------------S----S--
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--------------------------------------------S-----------------------------------
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------------------S-------------------------------------------------------------
--------------S---------------------------------------S---------S---------S-S---
-S--S--------------------------------------------------S--------------S---------
--S---------------S--------------------------------------------S----------------
----------------------------------------------S---------------------------------
------------------------S----------------------S--------------------------S--S--
------------------------------------------------S-------------------------------
------------------------S---------------S---------------------------------------
--------------S----------------------------------------------------S---------S-S
--S-S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_128
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-------------------------CGAATAGAGGGTTAGGACACCAG--------------------------------
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>reverse_1682
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-GCCGTCTTTCTTGCATGACC-----------------------------------------------------------
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---------------------------------------------------
