Multiple sequence alignment - TraesCS6A01G403600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G403600 chr6A 100.000 3661 0 0 1 3661 610896917 610900577 0.000000e+00 6761.0
1 TraesCS6A01G403600 chr6A 82.801 407 44 16 1176 1568 1327279 1327673 1.260000e-89 340.0
2 TraesCS6A01G403600 chr6A 88.679 159 16 2 1749 1905 17430336 17430178 3.730000e-45 193.0
3 TraesCS6A01G403600 chr6A 85.714 98 9 3 2116 2208 465615704 465615607 8.370000e-17 99.0
4 TraesCS6A01G403600 chr6D 91.334 1731 89 35 1919 3627 464260197 464261888 0.000000e+00 2309.0
5 TraesCS6A01G403600 chr6D 84.187 1992 217 61 1 1922 464258072 464260035 0.000000e+00 1844.0
6 TraesCS6A01G403600 chr6D 81.502 919 123 27 1 881 464184176 464185085 0.000000e+00 712.0
7 TraesCS6A01G403600 chr6B 83.984 1461 126 71 2240 3651 708020467 708021868 0.000000e+00 1303.0
8 TraesCS6A01G403600 chr6B 92.417 422 30 2 1691 2110 708020054 708020475 5.230000e-168 601.0
9 TraesCS6A01G403600 chr6B 82.017 595 55 32 929 1498 708019195 708019762 3.330000e-125 459.0
10 TraesCS6A01G403600 chr6B 80.672 357 41 8 1176 1528 647769762 647770094 6.070000e-63 252.0
11 TraesCS6A01G403600 chr5B 83.166 398 44 13 1186 1568 676286593 676286204 3.500000e-90 342.0
12 TraesCS6A01G403600 chr5B 85.283 265 34 4 1268 1528 699304733 699304470 6.030000e-68 268.0
13 TraesCS6A01G403600 chr5B 89.241 158 15 2 1749 1904 676286055 676285898 2.880000e-46 196.0
14 TraesCS6A01G403600 chr3D 82.555 407 44 16 1176 1568 3896743 3896350 2.110000e-87 333.0
15 TraesCS6A01G403600 chr1B 81.818 407 48 18 1176 1568 683657473 683657867 5.900000e-83 318.0
16 TraesCS6A01G403600 chr1B 87.898 157 17 2 1749 1903 683658016 683658172 2.250000e-42 183.0
17 TraesCS6A01G403600 chr5A 82.514 366 41 14 1176 1528 511921008 511920653 2.140000e-77 300.0
18 TraesCS6A01G403600 chr5A 81.744 367 44 13 1176 1528 573419757 573420114 5.980000e-73 285.0
19 TraesCS6A01G403600 chr4A 78.992 357 56 11 1176 1528 724422129 724422470 3.680000e-55 226.0
20 TraesCS6A01G403600 chr4A 83.505 97 9 7 2116 2209 734074225 734074317 2.340000e-12 84.2
21 TraesCS6A01G403600 chr7A 78.398 412 42 19 1541 1927 151703387 151702998 1.320000e-54 224.0
22 TraesCS6A01G403600 chr1A 88.608 158 16 2 1749 1904 66229606 66229763 1.340000e-44 191.0
23 TraesCS6A01G403600 chr2A 87.342 158 17 3 1749 1904 5156596 5156752 1.040000e-40 178.0
24 TraesCS6A01G403600 chr7D 87.879 99 7 1 2116 2209 263946345 263946247 1.070000e-20 111.0
25 TraesCS6A01G403600 chr1D 87.879 99 7 1 2116 2209 394864536 394864438 1.070000e-20 111.0
26 TraesCS6A01G403600 chr1D 84.043 94 7 3 2116 2209 110779085 110779000 2.340000e-12 84.2
27 TraesCS6A01G403600 chr3B 85.870 92 6 1 2116 2207 617266014 617265930 1.400000e-14 91.6
28 TraesCS6A01G403600 chr3B 82.653 98 10 3 2116 2208 547576550 547576455 3.030000e-11 80.5
29 TraesCS6A01G403600 chr3B 86.111 72 5 1 2121 2187 773898161 773898090 5.070000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G403600 chr6A 610896917 610900577 3660 False 6761.000000 6761 100.000000 1 3661 1 chr6A.!!$F2 3660
1 TraesCS6A01G403600 chr6D 464258072 464261888 3816 False 2076.500000 2309 87.760500 1 3627 2 chr6D.!!$F2 3626
2 TraesCS6A01G403600 chr6D 464184176 464185085 909 False 712.000000 712 81.502000 1 881 1 chr6D.!!$F1 880
3 TraesCS6A01G403600 chr6B 708019195 708021868 2673 False 787.666667 1303 86.139333 929 3651 3 chr6B.!!$F2 2722
4 TraesCS6A01G403600 chr5B 676285898 676286593 695 True 269.000000 342 86.203500 1186 1904 2 chr5B.!!$R2 718
5 TraesCS6A01G403600 chr1B 683657473 683658172 699 False 250.500000 318 84.858000 1176 1903 2 chr1B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 962 0.496851 GTAGCAAACGCAAAACACGC 59.503 50.0 0.00 0.00 0.00 5.34 F
1174 1229 0.253868 TCTCCCTCTCTCCCTCTCCA 60.254 60.0 0.00 0.00 0.00 3.86 F
1270 1333 0.792729 TTTGAATTGATCGCGCGTGC 60.793 50.0 30.98 22.25 37.91 5.34 F
1458 1535 1.018226 GCTGGTGCTGCACTCTACTG 61.018 60.0 29.54 17.93 34.40 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2600 3001 0.389817 CACGATCAGGAACCGCAAGA 60.390 55.0 0.0 0.0 43.02 3.02 R
2602 3003 0.604073 TACACGATCAGGAACCGCAA 59.396 50.0 0.0 0.0 0.00 4.85 R
2603 3004 0.821517 ATACACGATCAGGAACCGCA 59.178 50.0 0.0 0.0 0.00 5.69 R
3310 3798 0.034863 TATTGGTTGGGTTCGGGAGC 60.035 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.578716 AGGATATCATACACGACTTGGGG 59.421 47.826 4.83 0.00 0.00 4.96
32 33 0.673437 ACGACTTGGGGCAAAATGTG 59.327 50.000 0.00 0.00 0.00 3.21
34 35 1.602668 CGACTTGGGGCAAAATGTGTG 60.603 52.381 0.00 0.00 0.00 3.82
54 55 3.865446 TGTGAGATCGCACATCTGAAAT 58.135 40.909 25.88 0.00 43.35 2.17
135 136 2.042686 TGCCACTCCACTAATGCATC 57.957 50.000 0.00 0.00 0.00 3.91
138 139 1.945394 CCACTCCACTAATGCATCAGC 59.055 52.381 0.00 0.00 42.57 4.26
154 155 4.324402 GCATCAGCAAAAACAGATTTACCG 59.676 41.667 0.00 0.00 41.58 4.02
156 157 3.568007 TCAGCAAAAACAGATTTACCGCT 59.432 39.130 0.00 0.00 33.72 5.52
157 158 4.757657 TCAGCAAAAACAGATTTACCGCTA 59.242 37.500 0.00 0.00 32.79 4.26
162 163 6.305638 GCAAAAACAGATTTACCGCTAGAAAG 59.694 38.462 0.00 0.00 0.00 2.62
163 164 7.581476 CAAAAACAGATTTACCGCTAGAAAGA 58.419 34.615 0.00 0.00 0.00 2.52
165 166 5.662674 ACAGATTTACCGCTAGAAAGACT 57.337 39.130 0.00 0.00 0.00 3.24
175 176 3.143807 CTAGAAAGACTGGCAGACTCG 57.856 52.381 23.66 3.96 0.00 4.18
176 177 1.333177 AGAAAGACTGGCAGACTCGT 58.667 50.000 23.66 11.96 0.00 4.18
189 190 3.000971 GCAGACTCGTACTAAAATGACGC 60.001 47.826 0.00 0.00 36.54 5.19
210 211 5.067413 ACGCCGATCATATATCTCCGTTAAT 59.933 40.000 0.00 0.00 0.00 1.40
212 213 5.625721 GCCGATCATATATCTCCGTTAATCG 59.374 44.000 0.00 0.00 39.52 3.34
215 216 7.254829 CCGATCATATATCTCCGTTAATCGTCT 60.255 40.741 0.00 0.00 37.94 4.18
416 426 9.643652 TTCAATTTTTATTTGCAATCACGAAAC 57.356 25.926 0.00 0.00 0.00 2.78
423 434 5.743026 TTTGCAATCACGAAACTTACTCA 57.257 34.783 0.00 0.00 0.00 3.41
439 450 9.988350 AAACTTACTCACATATTTCGCAATTAG 57.012 29.630 0.00 0.00 0.00 1.73
631 651 8.000435 CAGCTTTTGACGAAGAATGAAATTTTC 59.000 33.333 2.05 2.05 36.07 2.29
686 707 8.598916 TCAACAACTATTCTTACCATAGTTCCA 58.401 33.333 2.92 0.00 42.91 3.53
868 907 8.492673 AAGAAGAAGGAAAACCAATGAAAAAC 57.507 30.769 0.00 0.00 0.00 2.43
884 923 9.623350 CAATGAAAAACAAAAAGGAACAAATGT 57.377 25.926 0.00 0.00 0.00 2.71
920 961 1.772966 CTGTAGCAAACGCAAAACACG 59.227 47.619 0.00 0.00 0.00 4.49
921 962 0.496851 GTAGCAAACGCAAAACACGC 59.503 50.000 0.00 0.00 0.00 5.34
990 1032 4.097361 GCGGGAAGGTGGGGAGAC 62.097 72.222 0.00 0.00 0.00 3.36
1002 1052 0.324460 GGGGAGACGAGGAGGAAGAA 60.324 60.000 0.00 0.00 0.00 2.52
1006 1056 3.055021 GGGAGACGAGGAGGAAGAAAAAT 60.055 47.826 0.00 0.00 0.00 1.82
1008 1058 4.185394 GAGACGAGGAGGAAGAAAAATCC 58.815 47.826 0.00 0.00 37.22 3.01
1098 1153 2.154854 TGTCGAAGAAGAACAGCCTG 57.845 50.000 0.00 0.00 39.69 4.85
1147 1202 3.064987 CTCCAGAGTACCGCCACCG 62.065 68.421 0.00 0.00 0.00 4.94
1148 1203 4.814294 CCAGAGTACCGCCACCGC 62.814 72.222 0.00 0.00 0.00 5.68
1149 1204 3.760035 CAGAGTACCGCCACCGCT 61.760 66.667 0.00 0.00 0.00 5.52
1150 1205 3.450115 AGAGTACCGCCACCGCTC 61.450 66.667 0.00 0.00 0.00 5.03
1151 1206 3.755628 GAGTACCGCCACCGCTCA 61.756 66.667 0.00 0.00 0.00 4.26
1152 1207 3.984200 GAGTACCGCCACCGCTCAC 62.984 68.421 0.00 0.00 0.00 3.51
1173 1228 0.478507 CTCTCCCTCTCTCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
1174 1229 0.253868 TCTCCCTCTCTCCCTCTCCA 60.254 60.000 0.00 0.00 0.00 3.86
1181 1236 1.780309 TCTCTCCCTCTCCATCCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
1228 1283 1.728672 GTAGCGGTCGAGAGGAAGG 59.271 63.158 0.00 0.00 0.00 3.46
1247 1303 4.541973 AGGGCCTGATTTGATTTGTTTC 57.458 40.909 4.50 0.00 0.00 2.78
1253 1309 5.236263 GCCTGATTTGATTTGTTTCGGTTTT 59.764 36.000 0.00 0.00 0.00 2.43
1264 1320 3.978217 TGTTTCGGTTTTGAATTGATCGC 59.022 39.130 0.00 0.00 0.00 4.58
1266 1329 0.907171 CGGTTTTGAATTGATCGCGC 59.093 50.000 0.00 0.00 0.00 6.86
1270 1333 0.792729 TTTGAATTGATCGCGCGTGC 60.793 50.000 30.98 22.25 37.91 5.34
1379 1456 3.268032 CCCCTGCCTCCCCTTTGT 61.268 66.667 0.00 0.00 0.00 2.83
1388 1465 2.593026 CCTCCCCTTTGTTGCTGTTAA 58.407 47.619 0.00 0.00 0.00 2.01
1391 1468 3.826157 CTCCCCTTTGTTGCTGTTAATCA 59.174 43.478 0.00 0.00 0.00 2.57
1392 1469 3.826157 TCCCCTTTGTTGCTGTTAATCAG 59.174 43.478 0.00 1.94 46.12 2.90
1393 1470 3.826157 CCCCTTTGTTGCTGTTAATCAGA 59.174 43.478 8.63 0.00 46.27 3.27
1396 1473 6.458210 CCCTTTGTTGCTGTTAATCAGATTT 58.542 36.000 0.00 0.00 46.27 2.17
1404 1481 4.285292 CTGTTAATCAGATTTGGATGCGC 58.715 43.478 0.00 0.00 46.27 6.09
1413 1490 4.552365 TGGATGCGCTGCTAGGCC 62.552 66.667 9.73 0.00 0.00 5.19
1414 1491 4.552365 GGATGCGCTGCTAGGCCA 62.552 66.667 9.73 0.00 0.00 5.36
1417 1494 3.746949 ATGCGCTGCTAGGCCACTC 62.747 63.158 9.73 0.00 0.00 3.51
1436 1513 4.246458 ACTCGTTAGTGAAATCAGCTTCC 58.754 43.478 0.00 0.00 33.57 3.46
1439 1516 3.372206 CGTTAGTGAAATCAGCTTCCTGG 59.628 47.826 0.00 0.00 39.61 4.45
1440 1517 1.831580 AGTGAAATCAGCTTCCTGGC 58.168 50.000 0.00 0.00 39.61 4.85
1453 1530 3.054503 CTGGCTGGTGCTGCACTC 61.055 66.667 29.54 20.36 39.59 3.51
1454 1531 3.548306 CTGGCTGGTGCTGCACTCT 62.548 63.158 29.54 0.00 39.59 3.24
1455 1532 2.176314 CTGGCTGGTGCTGCACTCTA 62.176 60.000 29.54 16.40 39.59 2.43
1456 1533 1.743252 GGCTGGTGCTGCACTCTAC 60.743 63.158 29.54 15.13 39.59 2.59
1457 1534 1.294780 GCTGGTGCTGCACTCTACT 59.705 57.895 29.54 0.00 34.40 2.57
1458 1535 1.018226 GCTGGTGCTGCACTCTACTG 61.018 60.000 29.54 17.93 34.40 2.74
1460 1537 1.078848 GGTGCTGCACTCTACTGGG 60.079 63.158 29.54 0.00 34.40 4.45
1467 1544 1.901085 CACTCTACTGGGTGCCTCC 59.099 63.158 0.00 0.00 0.00 4.30
1468 1545 1.682684 ACTCTACTGGGTGCCTCCG 60.683 63.158 0.00 0.00 37.00 4.63
1483 1566 1.550065 CTCCGTGTGTTAGATGAGCG 58.450 55.000 0.00 0.00 0.00 5.03
1528 1704 5.016051 TGGAGCTCTGATTAGTGATGTTC 57.984 43.478 14.64 0.00 0.00 3.18
1529 1705 4.467438 TGGAGCTCTGATTAGTGATGTTCA 59.533 41.667 14.64 0.00 0.00 3.18
1604 1801 2.789213 TCACCAATTTGGCTCGATTCA 58.211 42.857 15.49 0.00 42.67 2.57
1614 1811 7.814264 ATTTGGCTCGATTCATAGAAAAGAT 57.186 32.000 0.00 0.00 0.00 2.40
1716 1939 5.329399 ACACCATTTGTTTGGCCTAGATTA 58.671 37.500 3.32 0.00 40.68 1.75
1802 2026 5.639506 CGTTACTGATCAATTCACTTGGAGT 59.360 40.000 0.00 0.00 35.43 3.85
1803 2027 6.811665 CGTTACTGATCAATTCACTTGGAGTA 59.188 38.462 0.00 0.00 35.43 2.59
1810 2034 5.698832 TCAATTCACTTGGAGTAATTTGCG 58.301 37.500 0.00 0.00 35.43 4.85
1989 2380 5.067805 CCTGATTAATACAACCTGGCCTTTC 59.932 44.000 3.32 0.00 0.00 2.62
2125 2516 4.026804 GTCGTAGCCAAACATTATGAGTCG 60.027 45.833 0.00 0.00 0.00 4.18
2188 2579 1.134788 CCAGGGCCGACTACACTTTAG 60.135 57.143 0.00 0.00 0.00 1.85
2196 2587 2.513893 GACTACACTTTAGCGTCGACC 58.486 52.381 10.58 2.76 0.00 4.79
2203 2594 2.161211 ACTTTAGCGTCGACCAGTCTAC 59.839 50.000 10.58 0.00 0.00 2.59
2219 2610 1.277273 TCTACGAGTCCCTCAGAACGA 59.723 52.381 0.00 0.00 32.95 3.85
2249 2642 3.181463 ACTCGTAAACCTTGGTTGTAGCA 60.181 43.478 5.74 0.00 0.00 3.49
2286 2681 4.826274 ATCTGAACAACCTAGCTTGCTA 57.174 40.909 0.00 2.19 0.00 3.49
2287 2682 3.926616 TCTGAACAACCTAGCTTGCTAC 58.073 45.455 0.00 0.00 0.00 3.58
2288 2683 3.578716 TCTGAACAACCTAGCTTGCTACT 59.421 43.478 0.00 0.00 0.00 2.57
2302 2697 5.053145 GCTTGCTACTACATCTGTGCTAAT 58.947 41.667 0.00 0.00 0.00 1.73
2304 2699 4.371786 TGCTACTACATCTGTGCTAATGC 58.628 43.478 0.00 0.00 40.20 3.56
2318 2718 5.047021 TGTGCTAATGCTAGTCTGTTTCTCT 60.047 40.000 0.00 0.00 40.48 3.10
2320 2720 4.269844 GCTAATGCTAGTCTGTTTCTCTGC 59.730 45.833 0.00 0.00 36.03 4.26
2322 2722 1.970640 TGCTAGTCTGTTTCTCTGCCA 59.029 47.619 0.00 0.00 0.00 4.92
2323 2723 2.368548 TGCTAGTCTGTTTCTCTGCCAA 59.631 45.455 0.00 0.00 0.00 4.52
2427 2827 3.302344 GGAAAAGCCAAGGCCGCA 61.302 61.111 7.62 0.00 43.17 5.69
2468 2868 1.770658 CTGACTGATTCCCATGGCCTA 59.229 52.381 6.09 0.00 0.00 3.93
2570 2971 3.063725 GTCGAGCGGCGTTAGATAGATAT 59.936 47.826 9.90 0.00 41.80 1.63
2571 2972 4.269603 GTCGAGCGGCGTTAGATAGATATA 59.730 45.833 9.90 0.00 41.80 0.86
2572 2973 5.050227 GTCGAGCGGCGTTAGATAGATATAT 60.050 44.000 9.90 0.00 41.80 0.86
2573 2974 6.145209 GTCGAGCGGCGTTAGATAGATATATA 59.855 42.308 9.90 0.00 41.80 0.86
2599 3000 4.654262 AGTTTTGGTACTTCTCCAGTCAGA 59.346 41.667 0.00 0.00 36.88 3.27
2600 3001 5.308237 AGTTTTGGTACTTCTCCAGTCAGAT 59.692 40.000 0.00 0.00 36.88 2.90
2601 3002 5.407407 TTTGGTACTTCTCCAGTCAGATC 57.593 43.478 0.00 0.00 36.88 2.75
2602 3003 4.323569 TGGTACTTCTCCAGTCAGATCT 57.676 45.455 0.00 0.00 36.88 2.75
2603 3004 4.678256 TGGTACTTCTCCAGTCAGATCTT 58.322 43.478 0.00 0.00 36.88 2.40
2624 3025 1.470979 GCGGTTCCTGATCGTGTATGT 60.471 52.381 0.00 0.00 0.00 2.29
2634 3035 1.354101 TCGTGTATGTTCCACCCCTT 58.646 50.000 0.00 0.00 0.00 3.95
2644 3045 3.777522 TGTTCCACCCCTTGAAACATTTT 59.222 39.130 0.00 0.00 0.00 1.82
2645 3046 4.962995 TGTTCCACCCCTTGAAACATTTTA 59.037 37.500 0.00 0.00 0.00 1.52
2646 3047 5.604650 TGTTCCACCCCTTGAAACATTTTAT 59.395 36.000 0.00 0.00 0.00 1.40
2647 3048 6.782988 TGTTCCACCCCTTGAAACATTTTATA 59.217 34.615 0.00 0.00 0.00 0.98
2691 3092 2.230660 GTGTTCTTGCCTAGTTGCCTT 58.769 47.619 0.00 0.00 0.00 4.35
2692 3093 2.030805 GTGTTCTTGCCTAGTTGCCTTG 60.031 50.000 0.00 0.00 0.00 3.61
2758 3160 7.335422 ACAAGTTCCAATATGTCTCTGAATGTC 59.665 37.037 0.00 0.00 0.00 3.06
2774 3176 5.436175 TGAATGTCTTCAGAGTGGACAAAA 58.564 37.500 0.00 0.00 42.14 2.44
2800 3209 3.181967 GCTCACTGCCTGCGTACG 61.182 66.667 11.84 11.84 35.15 3.67
2859 3269 5.154222 GTCTGCATTTACTACAGTTTTGGC 58.846 41.667 0.00 0.00 33.12 4.52
2860 3270 4.217550 TCTGCATTTACTACAGTTTTGGCC 59.782 41.667 0.00 0.00 33.12 5.36
2891 3306 2.898729 ACCTGTGACTTGTGACTCAG 57.101 50.000 0.00 0.00 32.35 3.35
3033 3449 1.266989 GGGAACTCAAGCTTTTGGACG 59.733 52.381 0.00 0.00 0.00 4.79
3034 3450 1.335051 GGAACTCAAGCTTTTGGACGC 60.335 52.381 0.00 0.00 0.00 5.19
3035 3451 1.604278 GAACTCAAGCTTTTGGACGCT 59.396 47.619 0.00 0.00 38.30 5.07
3036 3452 1.680338 ACTCAAGCTTTTGGACGCTT 58.320 45.000 0.00 0.00 46.59 4.68
3037 3453 2.024414 ACTCAAGCTTTTGGACGCTTT 58.976 42.857 0.00 0.00 43.43 3.51
3119 3539 7.817962 CCATGCAAAAGAGATGAAGATTTCTTT 59.182 33.333 0.00 0.00 42.18 2.52
3143 3628 2.175715 ACTTCTGAGCTTTTGGACCCTT 59.824 45.455 0.00 0.00 0.00 3.95
3159 3644 4.158579 GGACCCTTTCCAGCAAAAAGATAG 59.841 45.833 6.96 0.39 45.10 2.08
3160 3645 4.740902 ACCCTTTCCAGCAAAAAGATAGT 58.259 39.130 6.96 0.86 36.09 2.12
3163 3648 6.378280 ACCCTTTCCAGCAAAAAGATAGTATG 59.622 38.462 6.96 0.00 36.09 2.39
3184 3672 2.693267 AATTCGCTCCTTGGGACTAC 57.307 50.000 0.00 0.00 37.36 2.73
3187 3675 0.970937 TCGCTCCTTGGGACTACTGG 60.971 60.000 0.00 0.00 32.41 4.00
3210 3698 6.780031 TGGATCTTTTGGATGTCCTTTTTGTA 59.220 34.615 0.09 0.00 34.33 2.41
3310 3798 4.440525 GCATTTTGTGATGTGACTATGGGG 60.441 45.833 0.00 0.00 0.00 4.96
3315 3803 0.398318 GATGTGACTATGGGGCTCCC 59.602 60.000 0.00 0.72 45.71 4.30
3366 3854 2.253758 GCGTCAGCAGAGCCAACAA 61.254 57.895 0.00 0.00 44.35 2.83
3436 3925 4.847198 TCTACGAGTGTTACACTATGGGA 58.153 43.478 18.63 11.39 45.44 4.37
3449 3939 3.567164 CACTATGGGATGCCACTTGAATC 59.433 47.826 8.67 0.00 0.00 2.52
3552 4057 6.903883 AATTTGTGTACAGACATCGATACC 57.096 37.500 0.00 0.00 38.04 2.73
3553 4058 4.380841 TTGTGTACAGACATCGATACCC 57.619 45.455 0.00 0.00 38.04 3.69
3560 4065 2.430694 CAGACATCGATACCCCTTGTCA 59.569 50.000 13.76 0.00 39.27 3.58
3566 4071 1.971357 CGATACCCCTTGTCATAGCCT 59.029 52.381 0.00 0.00 0.00 4.58
3584 4089 1.369091 CTCGAGCCCCCGACAAATTG 61.369 60.000 0.00 0.00 34.56 2.32
3598 4103 4.602995 GACAAATTGTGTTTGTCGCCTTA 58.397 39.130 15.29 0.00 45.63 2.69
3608 4114 4.762765 TGTTTGTCGCCTTATTGGTTACAT 59.237 37.500 0.00 0.00 38.35 2.29
3622 4128 3.117851 TGGTTACATGTGGAAAGGTGTCA 60.118 43.478 9.11 0.00 0.00 3.58
3623 4129 3.502211 GGTTACATGTGGAAAGGTGTCAG 59.498 47.826 9.11 0.00 0.00 3.51
3634 4140 3.470645 AAGGTGTCAGGTGTTACTCAC 57.529 47.619 0.00 0.00 45.47 3.51
3648 4154 5.688621 GTGTTACTCACACGACAAGTATTCA 59.311 40.000 0.00 0.00 46.51 2.57
3649 4155 5.688621 TGTTACTCACACGACAAGTATTCAC 59.311 40.000 0.00 0.00 0.00 3.18
3650 4156 3.650139 ACTCACACGACAAGTATTCACC 58.350 45.455 0.00 0.00 0.00 4.02
3651 4157 3.321111 ACTCACACGACAAGTATTCACCT 59.679 43.478 0.00 0.00 0.00 4.00
3652 4158 4.202223 ACTCACACGACAAGTATTCACCTT 60.202 41.667 0.00 0.00 0.00 3.50
3653 4159 5.010314 ACTCACACGACAAGTATTCACCTTA 59.990 40.000 0.00 0.00 0.00 2.69
3654 4160 6.032956 TCACACGACAAGTATTCACCTTAT 57.967 37.500 0.00 0.00 0.00 1.73
3655 4161 7.094075 ACTCACACGACAAGTATTCACCTTATA 60.094 37.037 0.00 0.00 0.00 0.98
3656 4162 7.778083 TCACACGACAAGTATTCACCTTATAT 58.222 34.615 0.00 0.00 0.00 0.86
3657 4163 7.704899 TCACACGACAAGTATTCACCTTATATG 59.295 37.037 0.00 0.00 0.00 1.78
3658 4164 7.704899 CACACGACAAGTATTCACCTTATATGA 59.295 37.037 0.00 0.00 0.00 2.15
3659 4165 8.421784 ACACGACAAGTATTCACCTTATATGAT 58.578 33.333 0.00 0.00 0.00 2.45
3660 4166 8.916654 CACGACAAGTATTCACCTTATATGATC 58.083 37.037 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.687920 TTGCCCCAAGTCGTGTATGA 59.312 50.000 0.00 0.00 0.00 2.15
23 24 2.245096 GCGATCTCACACACATTTTGC 58.755 47.619 0.00 0.00 0.00 3.68
34 35 4.118410 AGATTTCAGATGTGCGATCTCAC 58.882 43.478 8.93 8.93 37.48 3.51
118 119 1.945394 GCTGATGCATTAGTGGAGTGG 59.055 52.381 18.68 0.00 39.41 4.00
135 136 3.900941 AGCGGTAAATCTGTTTTTGCTG 58.099 40.909 0.00 0.00 31.21 4.41
138 139 7.534239 GTCTTTCTAGCGGTAAATCTGTTTTTG 59.466 37.037 0.00 0.00 0.00 2.44
145 146 4.680975 GCCAGTCTTTCTAGCGGTAAATCT 60.681 45.833 0.00 0.00 0.00 2.40
146 147 3.556365 GCCAGTCTTTCTAGCGGTAAATC 59.444 47.826 0.00 0.00 0.00 2.17
154 155 2.733858 CGAGTCTGCCAGTCTTTCTAGC 60.734 54.545 0.00 0.00 0.00 3.42
156 157 2.515854 ACGAGTCTGCCAGTCTTTCTA 58.484 47.619 0.00 0.00 0.00 2.10
157 158 1.333177 ACGAGTCTGCCAGTCTTTCT 58.667 50.000 0.00 0.00 0.00 2.52
162 163 3.844577 TTTAGTACGAGTCTGCCAGTC 57.155 47.619 0.00 0.00 0.00 3.51
163 164 4.219944 TCATTTTAGTACGAGTCTGCCAGT 59.780 41.667 0.00 0.00 0.00 4.00
165 166 4.491676 GTCATTTTAGTACGAGTCTGCCA 58.508 43.478 0.00 0.00 0.00 4.92
168 169 3.546670 GGCGTCATTTTAGTACGAGTCTG 59.453 47.826 0.00 0.00 38.89 3.51
169 170 3.730061 CGGCGTCATTTTAGTACGAGTCT 60.730 47.826 0.00 0.00 38.89 3.24
174 175 3.110358 TGATCGGCGTCATTTTAGTACG 58.890 45.455 6.85 0.00 39.55 3.67
175 176 6.946229 ATATGATCGGCGTCATTTTAGTAC 57.054 37.500 22.96 0.00 39.45 2.73
176 177 8.683615 AGATATATGATCGGCGTCATTTTAGTA 58.316 33.333 22.96 10.06 39.45 1.82
390 394 9.643652 GTTTCGTGATTGCAAATAAAAATTGAA 57.356 25.926 1.71 0.00 0.00 2.69
391 395 9.039870 AGTTTCGTGATTGCAAATAAAAATTGA 57.960 25.926 1.71 0.00 0.00 2.57
392 396 9.649024 AAGTTTCGTGATTGCAAATAAAAATTG 57.351 25.926 1.71 0.00 0.00 2.32
412 422 8.895932 AATTGCGAAATATGTGAGTAAGTTTC 57.104 30.769 0.00 0.00 0.00 2.78
432 443 2.949644 AGGTGCCGGAATAACTAATTGC 59.050 45.455 5.05 0.00 32.84 3.56
439 450 2.973694 TACTGAGGTGCCGGAATAAC 57.026 50.000 5.05 0.00 0.00 1.89
444 455 0.981183 ATGTTTACTGAGGTGCCGGA 59.019 50.000 5.05 0.00 0.00 5.14
686 707 7.054491 ACAAAGTTGTTCTATCCAGCAAAAT 57.946 32.000 0.00 0.00 38.47 1.82
850 889 7.667635 TCCTTTTTGTTTTTCATTGGTTTTCCT 59.332 29.630 0.00 0.00 41.38 3.36
851 890 7.821652 TCCTTTTTGTTTTTCATTGGTTTTCC 58.178 30.769 0.00 0.00 41.14 3.13
852 891 9.123709 GTTCCTTTTTGTTTTTCATTGGTTTTC 57.876 29.630 0.00 0.00 0.00 2.29
857 896 9.074443 CATTTGTTCCTTTTTGTTTTTCATTGG 57.926 29.630 0.00 0.00 0.00 3.16
887 926 6.034577 GCGTTTGCTACAGAAGTTTTCTTTTT 59.965 34.615 0.00 0.00 38.03 1.94
892 931 3.947626 TGCGTTTGCTACAGAAGTTTTC 58.052 40.909 0.00 0.00 43.34 2.29
895 936 4.102649 GTTTTGCGTTTGCTACAGAAGTT 58.897 39.130 0.00 0.00 43.34 2.66
900 941 1.772966 CGTGTTTTGCGTTTGCTACAG 59.227 47.619 0.00 0.00 43.34 2.74
905 946 1.136872 TCTGCGTGTTTTGCGTTTGC 61.137 50.000 0.00 0.00 43.20 3.68
990 1032 5.249420 AGAAAGGATTTTTCTTCCTCCTCG 58.751 41.667 0.00 0.00 42.90 4.63
1002 1052 1.546029 GCCGAGCCAAGAAAGGATTTT 59.454 47.619 0.00 0.00 39.27 1.82
1006 1056 0.537188 CTAGCCGAGCCAAGAAAGGA 59.463 55.000 0.00 0.00 0.00 3.36
1008 1058 0.462759 CCCTAGCCGAGCCAAGAAAG 60.463 60.000 0.00 0.00 0.00 2.62
1009 1059 1.198759 ACCCTAGCCGAGCCAAGAAA 61.199 55.000 0.00 0.00 0.00 2.52
1013 1063 1.002624 CAAACCCTAGCCGAGCCAA 60.003 57.895 0.00 0.00 0.00 4.52
1098 1153 1.916697 GCTGCTTCTTCCGCTTGGAC 61.917 60.000 0.00 0.00 43.03 4.02
1147 1202 0.755327 GAGAGAGGGAGAGGGTGAGC 60.755 65.000 0.00 0.00 0.00 4.26
1148 1203 0.106217 GGAGAGAGGGAGAGGGTGAG 60.106 65.000 0.00 0.00 0.00 3.51
1149 1204 1.585651 GGGAGAGAGGGAGAGGGTGA 61.586 65.000 0.00 0.00 0.00 4.02
1150 1205 1.075600 GGGAGAGAGGGAGAGGGTG 60.076 68.421 0.00 0.00 0.00 4.61
1151 1206 1.230819 AGGGAGAGAGGGAGAGGGT 60.231 63.158 0.00 0.00 0.00 4.34
1152 1207 0.998945 AGAGGGAGAGAGGGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
1153 1208 0.478507 GAGAGGGAGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
1154 1209 0.478507 GGAGAGGGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
1155 1210 0.253868 TGGAGAGGGAGAGAGGGAGA 60.254 60.000 0.00 0.00 0.00 3.71
1173 1228 1.333636 AAGCGACAGGGGAGAGGATG 61.334 60.000 0.00 0.00 0.00 3.51
1174 1229 0.618968 AAAGCGACAGGGGAGAGGAT 60.619 55.000 0.00 0.00 0.00 3.24
1181 1236 0.391793 GAGGAAGAAAGCGACAGGGG 60.392 60.000 0.00 0.00 0.00 4.79
1218 1273 0.543749 AAATCAGGCCCTTCCTCTCG 59.456 55.000 0.00 0.00 45.52 4.04
1228 1283 3.253230 CCGAAACAAATCAAATCAGGCC 58.747 45.455 0.00 0.00 0.00 5.19
1247 1303 0.907171 GCGCGATCAATTCAAAACCG 59.093 50.000 12.10 0.00 0.00 4.44
1253 1309 2.100031 AGCACGCGCGATCAATTCA 61.100 52.632 39.36 0.00 45.49 2.57
1264 1320 3.563088 ACACACACACAGCACGCG 61.563 61.111 3.53 3.53 0.00 6.01
1266 1329 1.083806 AGACACACACACACAGCACG 61.084 55.000 0.00 0.00 0.00 5.34
1270 1333 2.473816 CCTGTAGACACACACACACAG 58.526 52.381 0.00 0.00 34.54 3.66
1379 1456 5.653507 GCATCCAAATCTGATTAACAGCAA 58.346 37.500 2.85 0.00 45.38 3.91
1388 1465 0.666913 GCAGCGCATCCAAATCTGAT 59.333 50.000 11.47 0.00 0.00 2.90
1391 1468 1.590932 CTAGCAGCGCATCCAAATCT 58.409 50.000 11.47 0.00 0.00 2.40
1392 1469 0.590195 CCTAGCAGCGCATCCAAATC 59.410 55.000 11.47 0.00 0.00 2.17
1393 1470 1.450531 GCCTAGCAGCGCATCCAAAT 61.451 55.000 11.47 0.00 0.00 2.32
1396 1473 4.552365 GGCCTAGCAGCGCATCCA 62.552 66.667 11.47 0.00 0.00 3.41
1404 1481 0.818296 ACTAACGAGTGGCCTAGCAG 59.182 55.000 3.32 0.00 33.41 4.24
1414 1491 4.021016 AGGAAGCTGATTTCACTAACGAGT 60.021 41.667 0.00 0.00 35.80 4.18
1417 1494 3.372206 CCAGGAAGCTGATTTCACTAACG 59.628 47.826 0.00 0.00 0.00 3.18
1436 1513 2.176314 TAGAGTGCAGCACCAGCCAG 62.176 60.000 22.41 0.00 43.56 4.85
1439 1516 1.018226 CAGTAGAGTGCAGCACCAGC 61.018 60.000 22.41 11.86 42.56 4.85
1440 1517 0.390866 CCAGTAGAGTGCAGCACCAG 60.391 60.000 22.41 3.53 34.49 4.00
1453 1530 2.283529 ACACGGAGGCACCCAGTAG 61.284 63.158 0.00 0.00 34.64 2.57
1454 1531 2.203728 ACACGGAGGCACCCAGTA 60.204 61.111 0.00 0.00 34.64 2.74
1455 1532 3.941188 CACACGGAGGCACCCAGT 61.941 66.667 0.00 0.00 34.64 4.00
1456 1533 2.107041 TAACACACGGAGGCACCCAG 62.107 60.000 0.00 0.00 34.64 4.45
1457 1534 2.107041 CTAACACACGGAGGCACCCA 62.107 60.000 0.00 0.00 34.64 4.51
1458 1535 1.375523 CTAACACACGGAGGCACCC 60.376 63.158 0.00 0.00 34.64 4.61
1460 1537 1.067142 TCATCTAACACACGGAGGCAC 60.067 52.381 0.00 0.00 0.00 5.01
1464 1541 1.135373 ACGCTCATCTAACACACGGAG 60.135 52.381 0.00 0.00 0.00 4.63
1465 1542 0.885879 ACGCTCATCTAACACACGGA 59.114 50.000 0.00 0.00 0.00 4.69
1466 1543 2.554806 TACGCTCATCTAACACACGG 57.445 50.000 0.00 0.00 0.00 4.94
1467 1544 3.691498 TGATACGCTCATCTAACACACG 58.309 45.455 0.00 0.00 0.00 4.49
1468 1545 5.043903 ACATGATACGCTCATCTAACACAC 58.956 41.667 0.00 0.00 42.91 3.82
1483 1566 6.183360 CCATGTACCAAAAGACCACATGATAC 60.183 42.308 13.13 0.00 45.95 2.24
1528 1704 3.198409 TGCAACCTCACATAGCCTATG 57.802 47.619 10.19 10.19 41.88 2.23
1529 1705 3.545703 GTTGCAACCTCACATAGCCTAT 58.454 45.455 19.15 0.00 0.00 2.57
1559 1738 1.338200 CCCAGCAGACAAGTACAGACC 60.338 57.143 0.00 0.00 0.00 3.85
1614 1811 7.236847 TCCTCTCACTAAGAATAAAAAGGTCCA 59.763 37.037 0.00 0.00 32.23 4.02
1630 1842 3.764434 GTCCAACAGTCATCCTCTCACTA 59.236 47.826 0.00 0.00 0.00 2.74
1633 1845 2.828520 GAGTCCAACAGTCATCCTCTCA 59.171 50.000 0.00 0.00 0.00 3.27
1667 1879 5.979517 CCTTCTTAAACAAAGCCAAAGAGTG 59.020 40.000 0.00 0.00 34.97 3.51
1802 2026 6.032956 TGGAAAGAGAGAGTACGCAAATTA 57.967 37.500 0.00 0.00 0.00 1.40
1803 2027 4.894784 TGGAAAGAGAGAGTACGCAAATT 58.105 39.130 0.00 0.00 0.00 1.82
1810 2034 7.040271 ACACTTCTAGTTGGAAAGAGAGAGTAC 60.040 40.741 0.00 0.00 0.00 2.73
2113 2504 5.886474 TGACTAGTCCTTCGACTCATAATGT 59.114 40.000 20.11 0.00 46.90 2.71
2219 2610 4.141779 ACCAAGGTTTACGAGTCAAAGAGT 60.142 41.667 0.00 0.00 0.00 3.24
2264 2657 4.826274 AGCAAGCTAGGTTGTTCAGATA 57.174 40.909 29.71 0.00 0.00 1.98
2286 2681 5.596361 AGACTAGCATTAGCACAGATGTAGT 59.404 40.000 0.00 0.00 45.49 2.73
2287 2682 5.919707 CAGACTAGCATTAGCACAGATGTAG 59.080 44.000 0.00 0.00 45.49 2.74
2288 2683 5.360999 ACAGACTAGCATTAGCACAGATGTA 59.639 40.000 0.00 0.00 45.49 2.29
2302 2697 1.970640 TGGCAGAGAAACAGACTAGCA 59.029 47.619 0.00 0.00 0.00 3.49
2304 2699 5.240891 TGAATTGGCAGAGAAACAGACTAG 58.759 41.667 0.00 0.00 0.00 2.57
2318 2718 3.131577 GCTTCCATCAATCTGAATTGGCA 59.868 43.478 0.00 0.00 42.19 4.92
2320 2720 3.628942 TCGCTTCCATCAATCTGAATTGG 59.371 43.478 0.00 0.00 42.19 3.16
2322 2722 6.994496 TCTTATCGCTTCCATCAATCTGAATT 59.006 34.615 0.00 0.00 0.00 2.17
2323 2723 6.528321 TCTTATCGCTTCCATCAATCTGAAT 58.472 36.000 0.00 0.00 0.00 2.57
2427 2827 1.078848 GTCGAGCTCCATGGCTTGT 60.079 57.895 6.96 0.00 43.20 3.16
2534 2935 0.747255 CTCGACTACATGGACCTGGG 59.253 60.000 0.00 0.00 0.00 4.45
2570 2971 8.431910 ACTGGAGAAGTACCAAAACTCTTATA 57.568 34.615 0.00 0.00 37.36 0.98
2571 2972 7.016268 TGACTGGAGAAGTACCAAAACTCTTAT 59.984 37.037 0.00 0.00 40.07 1.73
2572 2973 6.325545 TGACTGGAGAAGTACCAAAACTCTTA 59.674 38.462 0.00 0.00 40.07 2.10
2573 2974 5.130477 TGACTGGAGAAGTACCAAAACTCTT 59.870 40.000 0.00 0.00 40.07 2.85
2586 2987 2.538437 CGCAAGATCTGACTGGAGAAG 58.462 52.381 0.00 0.00 43.02 2.85
2599 3000 0.537188 ACGATCAGGAACCGCAAGAT 59.463 50.000 0.00 0.00 43.02 2.40
2600 3001 0.389817 CACGATCAGGAACCGCAAGA 60.390 55.000 0.00 0.00 43.02 3.02
2601 3002 0.670546 ACACGATCAGGAACCGCAAG 60.671 55.000 0.00 0.00 0.00 4.01
2602 3003 0.604073 TACACGATCAGGAACCGCAA 59.396 50.000 0.00 0.00 0.00 4.85
2603 3004 0.821517 ATACACGATCAGGAACCGCA 59.178 50.000 0.00 0.00 0.00 5.69
2624 3025 7.580495 GCATATAAAATGTTTCAAGGGGTGGAA 60.580 37.037 0.00 0.00 0.00 3.53
2634 3035 7.922278 GGCATCTGAAGCATATAAAATGTTTCA 59.078 33.333 14.01 14.01 43.52 2.69
2645 3046 9.121658 CATATTATCTTGGCATCTGAAGCATAT 57.878 33.333 7.22 0.00 0.00 1.78
2646 3047 8.105197 ACATATTATCTTGGCATCTGAAGCATA 58.895 33.333 7.22 0.00 0.00 3.14
2647 3048 6.946583 ACATATTATCTTGGCATCTGAAGCAT 59.053 34.615 7.22 0.00 0.00 3.79
2691 3092 1.304381 GAATGGGGAGTTGCTGGCA 60.304 57.895 0.00 0.00 0.00 4.92
2692 3093 2.054453 GGAATGGGGAGTTGCTGGC 61.054 63.158 0.00 0.00 0.00 4.85
2758 3160 2.221981 GCGAGTTTTGTCCACTCTGAAG 59.778 50.000 0.00 0.00 38.89 3.02
2765 3167 1.001378 AGCATTGCGAGTTTTGTCCAC 60.001 47.619 2.38 0.00 0.00 4.02
2766 3168 1.266718 GAGCATTGCGAGTTTTGTCCA 59.733 47.619 2.38 0.00 0.00 4.02
2774 3176 3.571119 GCAGTGAGCATTGCGAGT 58.429 55.556 2.38 0.00 44.79 4.18
2811 3220 5.221106 GGCAGACCGTGTATTGTACTGTATA 60.221 44.000 0.00 0.00 0.00 1.47
2859 3269 2.496470 GTCACAGGTACTACCAAGGAGG 59.504 54.545 8.01 0.00 41.95 4.30
2860 3270 3.432378 AGTCACAGGTACTACCAAGGAG 58.568 50.000 8.01 0.00 41.95 3.69
2891 3306 3.127030 GCTGCCAGTACAGTTTTGGATAC 59.873 47.826 7.11 0.00 39.96 2.24
3033 3449 3.665745 TTGCATGGGAAGAAAGAAAGC 57.334 42.857 0.00 0.00 0.00 3.51
3119 3539 3.496160 GGGTCCAAAAGCTCAGAAGTACA 60.496 47.826 0.00 0.00 0.00 2.90
3126 3546 1.889170 GGAAAGGGTCCAAAAGCTCAG 59.111 52.381 0.00 0.00 46.97 3.35
3159 3644 3.312697 GTCCCAAGGAGCGAATTTCATAC 59.687 47.826 0.00 0.00 29.39 2.39
3160 3645 3.199946 AGTCCCAAGGAGCGAATTTCATA 59.800 43.478 0.00 0.00 29.39 2.15
3163 3648 2.115343 AGTCCCAAGGAGCGAATTTC 57.885 50.000 0.00 0.00 29.39 2.17
3184 3672 5.990120 AAAAGGACATCCAAAAGATCCAG 57.010 39.130 0.00 0.00 38.89 3.86
3187 3675 8.110860 TCTACAAAAAGGACATCCAAAAGATC 57.889 34.615 0.00 0.00 38.89 2.75
3221 3709 7.774625 ACAAAAATCAACCATGTTTTCCATCTT 59.225 29.630 0.00 0.00 30.15 2.40
3263 3751 5.587043 CCATTACCACCGCAAAAGATACTTA 59.413 40.000 0.00 0.00 0.00 2.24
3265 3753 3.945285 CCATTACCACCGCAAAAGATACT 59.055 43.478 0.00 0.00 0.00 2.12
3266 3754 3.488553 GCCATTACCACCGCAAAAGATAC 60.489 47.826 0.00 0.00 0.00 2.24
3310 3798 0.034863 TATTGGTTGGGTTCGGGAGC 60.035 55.000 0.00 0.00 0.00 4.70
3315 3803 2.232452 TGGCAATTATTGGTTGGGTTCG 59.768 45.455 7.08 0.00 0.00 3.95
3316 3804 3.971245 TGGCAATTATTGGTTGGGTTC 57.029 42.857 7.08 0.00 0.00 3.62
3366 3854 1.273666 ACCAGGTACGGAGAAAGGGAT 60.274 52.381 0.00 0.00 0.00 3.85
3436 3925 3.569701 ACTTTGTTCGATTCAAGTGGCAT 59.430 39.130 0.00 0.00 0.00 4.40
3449 3939 5.513376 GGTAGGGTTTGTTAACTTTGTTCG 58.487 41.667 7.22 0.00 34.59 3.95
3528 4033 6.315393 GGGTATCGATGTCTGTACACAAATTT 59.685 38.462 8.54 0.00 38.78 1.82
3530 4035 5.357257 GGGTATCGATGTCTGTACACAAAT 58.643 41.667 8.54 0.00 38.78 2.32
3539 4044 2.430694 TGACAAGGGGTATCGATGTCTG 59.569 50.000 8.54 0.00 40.70 3.51
3552 4057 0.249657 GCTCGAGGCTATGACAAGGG 60.250 60.000 15.58 0.00 38.06 3.95
3553 4058 0.249657 GGCTCGAGGCTATGACAAGG 60.250 60.000 30.02 0.00 41.46 3.61
3560 4065 4.220163 TCGGGGGCTCGAGGCTAT 62.220 66.667 34.35 0.00 41.46 2.97
3566 4071 1.376683 CAATTTGTCGGGGGCTCGA 60.377 57.895 0.00 0.00 36.76 4.04
3584 4089 3.636282 AACCAATAAGGCGACAAACAC 57.364 42.857 0.00 0.00 43.14 3.32
3598 4103 4.479158 ACACCTTTCCACATGTAACCAAT 58.521 39.130 0.00 0.00 0.00 3.16
3608 4114 0.916086 ACACCTGACACCTTTCCACA 59.084 50.000 0.00 0.00 0.00 4.17
3634 4140 8.818141 ATCATATAAGGTGAATACTTGTCGTG 57.182 34.615 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.