Multiple sequence alignment - TraesCS6A01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G399200 chr6A 100.000 2873 0 0 1 2873 609175083 609177955 0.000000e+00 5306
1 TraesCS6A01G399200 chr6A 87.449 486 56 4 1195 1679 27772843 27773324 3.230000e-154 555
2 TraesCS6A01G399200 chr6D 94.573 2156 64 23 1 2150 462421803 462423911 0.000000e+00 3284
3 TraesCS6A01G399200 chr6D 90.947 729 32 9 2152 2871 462423970 462424673 0.000000e+00 950
4 TraesCS6A01G399200 chr6D 87.654 486 55 4 1195 1679 26351099 26351580 6.950000e-156 560
5 TraesCS6A01G399200 chr6D 79.537 259 27 17 2152 2409 462424719 462424952 8.240000e-36 161
6 TraesCS6A01G399200 chr6B 93.931 2142 70 24 47 2150 704889508 704891627 0.000000e+00 3181
7 TraesCS6A01G399200 chr6B 90.698 731 40 6 2152 2871 704891699 704892412 0.000000e+00 948
8 TraesCS6A01G399200 chr6B 87.243 486 57 3 1195 1679 48552012 48552493 1.500000e-152 549
9 TraesCS6A01G399200 chr6B 78.125 480 91 10 1219 1688 549193609 549194084 2.800000e-75 292
10 TraesCS6A01G399200 chr6B 76.364 385 51 29 2152 2535 704892454 704892799 1.370000e-38 171
11 TraesCS6A01G399200 chr4B 87.273 495 58 5 1195 1688 653611 653121 6.950000e-156 560
12 TraesCS6A01G399200 chr4D 87.269 487 55 4 1195 1679 1230928 1231409 1.500000e-152 549
13 TraesCS6A01G399200 chr4A 85.484 496 65 4 1195 1688 603540372 603539882 7.100000e-141 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G399200 chr6A 609175083 609177955 2872 False 5306.000000 5306 100.000000 1 2873 1 chr6A.!!$F2 2872
1 TraesCS6A01G399200 chr6D 462421803 462424952 3149 False 1465.000000 3284 88.352333 1 2871 3 chr6D.!!$F2 2870
2 TraesCS6A01G399200 chr6B 704889508 704892799 3291 False 1433.333333 3181 86.997667 47 2871 3 chr6B.!!$F3 2824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.107848 AATAGGGACCGGTTCGCTTG 60.108 55.0 22.07 0.0 45.06 4.01 F
1165 1181 0.386858 CGCGGACGAGAACAAAGAGA 60.387 55.0 0.00 0.0 43.93 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1261 0.951558 GCTTCGGCTTGTTCTTGGAA 59.048 50.000 0.0 0.0 38.08 3.53 R
2442 2556 1.470098 GCTTGCACTGGATCGAAACAT 59.530 47.619 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.418976 GGTAGGAAGCCGAAAATGTCAC 59.581 50.000 0.00 0.00 0.00 3.67
25 26 2.270352 AGGAAGCCGAAAATGTCACA 57.730 45.000 0.00 0.00 0.00 3.58
33 34 3.004171 CCGAAAATGTCACACCCGATTA 58.996 45.455 0.00 0.00 0.00 1.75
45 46 4.688413 CACACCCGATTAAAATTTGTTGGG 59.312 41.667 16.73 16.73 41.29 4.12
59 60 0.950555 GTTGGGGACGACGGGTAAAC 60.951 60.000 0.00 0.00 34.37 2.01
98 99 2.355599 CTAGCTGCTGCGGATCGG 60.356 66.667 13.72 0.00 45.42 4.18
153 154 9.461312 ACACATATTAACAATTAGTGGACATGT 57.539 29.630 0.00 0.00 32.26 3.21
197 198 2.563406 AGGAGGGAGAAACTTTAGGGG 58.437 52.381 0.00 0.00 0.00 4.79
205 206 7.310634 AGGGAGAAACTTTAGGGGTTATTTTT 58.689 34.615 0.00 0.00 0.00 1.94
227 228 4.430765 CCTACCGAACGGCGCACT 62.431 66.667 10.83 0.00 39.32 4.40
312 313 0.107848 AATAGGGACCGGTTCGCTTG 60.108 55.000 22.07 0.00 45.06 4.01
320 321 3.450578 GACCGGTTCGCTTGTATGAATA 58.549 45.455 9.42 0.00 0.00 1.75
347 348 2.621070 AGCCCTACTCCAGAGTGAAAA 58.379 47.619 10.59 0.00 42.52 2.29
446 447 5.153513 CAGATCAAAGCGAAATCCGAAAAA 58.846 37.500 0.00 0.00 41.76 1.94
515 516 1.204704 GGGTGCACCTTGGATAAAAGC 59.795 52.381 33.91 10.13 35.85 3.51
699 704 7.414266 TCTCTAGCTAGCCCATTATCTCATTA 58.586 38.462 16.35 0.00 0.00 1.90
704 709 6.671340 AGCTAGCCCATTATCTCATTATCTCA 59.329 38.462 12.13 0.00 0.00 3.27
705 710 7.347748 AGCTAGCCCATTATCTCATTATCTCAT 59.652 37.037 12.13 0.00 0.00 2.90
725 730 7.615403 TCTCATTATCTCTCTCTCTCTCTAGC 58.385 42.308 0.00 0.00 0.00 3.42
726 731 7.455953 TCTCATTATCTCTCTCTCTCTCTAGCT 59.544 40.741 0.00 0.00 0.00 3.32
727 732 8.664669 TCATTATCTCTCTCTCTCTCTAGCTA 57.335 38.462 0.00 0.00 0.00 3.32
728 733 8.753133 TCATTATCTCTCTCTCTCTCTAGCTAG 58.247 40.741 15.01 15.01 0.00 3.42
759 764 1.443802 GTGCAACTTGGTCTCCTAGC 58.556 55.000 0.00 0.00 29.74 3.42
760 765 1.002544 GTGCAACTTGGTCTCCTAGCT 59.997 52.381 0.00 0.00 29.74 3.32
761 766 2.233922 GTGCAACTTGGTCTCCTAGCTA 59.766 50.000 0.00 0.00 29.74 3.32
762 767 2.497675 TGCAACTTGGTCTCCTAGCTAG 59.502 50.000 14.20 14.20 35.02 3.42
836 841 7.406620 AGATCTCCCCAAATATTTGTATCCA 57.593 36.000 23.24 7.83 36.45 3.41
906 915 7.127032 AGGAGAGGATAGACAAATTCATCTTGT 59.873 37.037 0.00 0.00 39.69 3.16
939 948 9.665719 TCTTATGATCTACTTGTATTTGTTGCA 57.334 29.630 0.00 0.00 0.00 4.08
940 949 9.708222 CTTATGATCTACTTGTATTTGTTGCAC 57.292 33.333 0.00 0.00 0.00 4.57
941 950 7.928307 ATGATCTACTTGTATTTGTTGCACT 57.072 32.000 0.00 0.00 0.00 4.40
943 952 9.618890 ATGATCTACTTGTATTTGTTGCACTAT 57.381 29.630 0.00 0.00 0.00 2.12
1128 1144 2.681778 CCTGAGACCAGCCCGACT 60.682 66.667 0.00 0.00 39.07 4.18
1161 1177 2.591311 GCACGCGGACGAGAACAAA 61.591 57.895 12.47 0.00 43.93 2.83
1165 1181 0.386858 CGCGGACGAGAACAAAGAGA 60.387 55.000 0.00 0.00 43.93 3.10
1179 1195 3.681835 GAGACTGTCGGTGGCGGT 61.682 66.667 1.52 0.00 0.00 5.68
1806 1825 3.118482 TGTTCAACATGCCACCAAACAAT 60.118 39.130 0.00 0.00 0.00 2.71
1876 1901 2.423446 GCGCTCCCTACTGATGGG 59.577 66.667 0.00 0.00 45.90 4.00
2142 2177 4.421058 CTCTGGTCAATTCATGCAATGTG 58.579 43.478 0.00 0.00 46.80 3.21
2144 2179 4.281435 TCTGGTCAATTCATGCAATGTGTT 59.719 37.500 0.00 0.00 46.80 3.32
2145 2180 4.958509 TGGTCAATTCATGCAATGTGTTT 58.041 34.783 0.00 0.00 46.80 2.83
2146 2181 4.750598 TGGTCAATTCATGCAATGTGTTTG 59.249 37.500 0.00 0.00 46.80 2.93
2147 2182 4.152759 GGTCAATTCATGCAATGTGTTTGG 59.847 41.667 0.00 0.00 46.80 3.28
2148 2183 4.751098 GTCAATTCATGCAATGTGTTTGGT 59.249 37.500 0.00 0.00 46.80 3.67
2149 2184 5.236911 GTCAATTCATGCAATGTGTTTGGTT 59.763 36.000 0.00 0.00 46.80 3.67
2150 2185 5.466058 TCAATTCATGCAATGTGTTTGGTTC 59.534 36.000 0.00 0.00 46.80 3.62
2164 2267 5.920840 GTGTTTGGTTCTGCTTAATTTCTCC 59.079 40.000 0.00 0.00 0.00 3.71
2171 2274 5.329035 TCTGCTTAATTTCTCCAAATGGC 57.671 39.130 0.00 0.00 32.18 4.40
2172 2275 4.160252 TCTGCTTAATTTCTCCAAATGGCC 59.840 41.667 0.00 0.00 32.18 5.36
2176 2279 5.163374 GCTTAATTTCTCCAAATGGCCAGAT 60.163 40.000 13.05 0.00 32.18 2.90
2259 2365 4.931914 TGCTACTTGTTCTAGTCCCTACT 58.068 43.478 0.00 0.00 39.91 2.57
2260 2366 4.948621 TGCTACTTGTTCTAGTCCCTACTC 59.051 45.833 0.00 0.00 37.15 2.59
2261 2367 4.338964 GCTACTTGTTCTAGTCCCTACTCC 59.661 50.000 0.00 0.00 37.15 3.85
2262 2368 3.710724 ACTTGTTCTAGTCCCTACTCCC 58.289 50.000 0.00 0.00 37.15 4.30
2263 2369 3.337301 ACTTGTTCTAGTCCCTACTCCCT 59.663 47.826 0.00 0.00 37.15 4.20
2264 2370 4.543337 ACTTGTTCTAGTCCCTACTCCCTA 59.457 45.833 0.00 0.00 37.15 3.53
2265 2371 4.792513 TGTTCTAGTCCCTACTCCCTAG 57.207 50.000 0.00 0.00 37.15 3.02
2406 2520 9.517609 CAAGTATAGTTAGTAAGTAGCTTGGTG 57.482 37.037 22.16 9.85 33.88 4.17
2407 2521 8.820153 AGTATAGTTAGTAAGTAGCTTGGTGT 57.180 34.615 0.00 0.00 0.00 4.16
2408 2522 8.901793 AGTATAGTTAGTAAGTAGCTTGGTGTC 58.098 37.037 0.00 0.00 0.00 3.67
2409 2523 7.713734 ATAGTTAGTAAGTAGCTTGGTGTCA 57.286 36.000 0.00 0.00 0.00 3.58
2410 2524 6.026947 AGTTAGTAAGTAGCTTGGTGTCAG 57.973 41.667 0.00 0.00 0.00 3.51
2411 2525 5.773680 AGTTAGTAAGTAGCTTGGTGTCAGA 59.226 40.000 0.00 0.00 0.00 3.27
2412 2526 4.522722 AGTAAGTAGCTTGGTGTCAGAC 57.477 45.455 0.00 0.00 0.00 3.51
2413 2527 4.153411 AGTAAGTAGCTTGGTGTCAGACT 58.847 43.478 1.31 0.00 0.00 3.24
2414 2528 5.322754 AGTAAGTAGCTTGGTGTCAGACTA 58.677 41.667 1.31 0.00 0.00 2.59
2415 2529 4.522722 AAGTAGCTTGGTGTCAGACTAC 57.477 45.455 1.31 0.00 35.30 2.73
2416 2530 3.768878 AGTAGCTTGGTGTCAGACTACT 58.231 45.455 1.31 0.00 38.00 2.57
2442 2556 2.768527 GTTGGTCCCAGATCTCTCATGA 59.231 50.000 0.00 0.00 0.00 3.07
2517 2631 9.840427 AGTTTGAACTTAATTTGATTGGATACG 57.160 29.630 0.00 0.00 35.21 3.06
2550 2664 3.054875 TGAAGGTGCATCTGTAGCTCATT 60.055 43.478 0.00 0.00 37.50 2.57
2555 2674 1.224075 CATCTGTAGCTCATTGGCGG 58.776 55.000 0.00 0.00 37.29 6.13
2589 2708 2.093890 CCATAGCACAAGTGGCAATGA 58.906 47.619 8.38 0.00 0.00 2.57
2716 2838 7.120726 CAGATGATGATTAATTAGGCTCATGCA 59.879 37.037 10.32 0.00 41.91 3.96
2722 2844 7.452562 TGATTAATTAGGCTCATGCATAGTCA 58.547 34.615 0.00 0.00 41.91 3.41
2739 2861 1.034838 TCATGCCCCGTTGTTATGGC 61.035 55.000 0.00 0.00 44.27 4.40
2765 2887 9.672086 CGAAACAGAAAATTAGTGGAATGTTTA 57.328 29.630 0.00 0.00 39.11 2.01
2805 2927 8.557864 CGTTTATACTTAGTTAGCTGAGCTAGA 58.442 37.037 14.49 3.47 42.34 2.43
2871 2993 5.176590 GCTATCTCAGTCGGATCAATTTCAC 59.823 44.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.021016 TCCCCAACAAATTTTAATCGGGTG 60.021 41.667 0.00 0.00 0.00 4.61
25 26 4.020928 GTCCCCAACAAATTTTAATCGGGT 60.021 41.667 0.00 0.00 0.00 5.28
33 34 1.338655 CCGTCGTCCCCAACAAATTTT 59.661 47.619 0.00 0.00 0.00 1.82
45 46 0.389037 GACCAGTTTACCCGTCGTCC 60.389 60.000 0.00 0.00 0.00 4.79
59 60 2.350804 CGCTCTCATGTGAAATGACCAG 59.649 50.000 0.00 0.00 0.00 4.00
98 99 4.799428 GTGACGAGTAAGAATCTAACAGGC 59.201 45.833 0.00 0.00 0.00 4.85
153 154 0.539669 TCGTGGCTGAGAGAACTGGA 60.540 55.000 0.00 0.00 0.00 3.86
197 198 4.397382 GTTCGGTAGGCGTGAAAAATAAC 58.603 43.478 0.00 0.00 0.00 1.89
205 206 4.424566 GCCGTTCGGTAGGCGTGA 62.425 66.667 12.81 0.00 44.22 4.35
227 228 1.612442 GTCCCCTACTGAGGTGGCA 60.612 63.158 0.00 0.00 41.95 4.92
347 348 1.274712 TCCCCCGGTACACGTTAAAT 58.725 50.000 0.00 0.00 42.24 1.40
446 447 0.257039 CATGCTGCTCCTAAGGGGTT 59.743 55.000 0.00 0.00 36.25 4.11
515 516 8.912988 TCAACAATAATTAATTAAGCAGGGAGG 58.087 33.333 11.80 0.00 0.00 4.30
699 704 8.263640 GCTAGAGAGAGAGAGAGATAATGAGAT 58.736 40.741 0.00 0.00 0.00 2.75
704 709 7.401493 AGCTAGCTAGAGAGAGAGAGAGATAAT 59.599 40.741 25.15 0.00 0.00 1.28
705 710 6.726299 AGCTAGCTAGAGAGAGAGAGAGATAA 59.274 42.308 25.15 0.00 0.00 1.75
721 726 3.057596 GCACCTGTGATCTAGCTAGCTAG 60.058 52.174 36.20 36.20 45.38 3.42
722 727 2.887783 GCACCTGTGATCTAGCTAGCTA 59.112 50.000 22.85 22.85 0.00 3.32
723 728 1.686052 GCACCTGTGATCTAGCTAGCT 59.314 52.381 23.12 23.12 0.00 3.32
724 729 1.410517 TGCACCTGTGATCTAGCTAGC 59.589 52.381 16.35 6.62 0.00 3.42
725 730 3.131933 AGTTGCACCTGTGATCTAGCTAG 59.868 47.826 15.01 15.01 0.00 3.42
726 731 3.099905 AGTTGCACCTGTGATCTAGCTA 58.900 45.455 0.51 0.00 0.00 3.32
727 732 1.905215 AGTTGCACCTGTGATCTAGCT 59.095 47.619 0.51 0.00 0.00 3.32
728 733 2.393271 AGTTGCACCTGTGATCTAGC 57.607 50.000 0.51 0.00 0.00 3.42
759 764 8.442632 TTTGCATACCTTGAAGATGAATCTAG 57.557 34.615 0.00 0.00 35.76 2.43
760 765 8.985315 ATTTGCATACCTTGAAGATGAATCTA 57.015 30.769 0.00 0.00 35.76 1.98
761 766 7.893124 ATTTGCATACCTTGAAGATGAATCT 57.107 32.000 0.00 0.00 39.22 2.40
762 767 8.192774 TCAATTTGCATACCTTGAAGATGAATC 58.807 33.333 0.00 0.00 0.00 2.52
836 841 7.121907 GCAGAAAGGGAGAAGAGATTTTTGTAT 59.878 37.037 0.00 0.00 0.00 2.29
853 858 4.528206 ACAATAAGAAAAGGGCAGAAAGGG 59.472 41.667 0.00 0.00 0.00 3.95
920 929 9.448438 TTCATAGTGCAACAAATACAAGTAGAT 57.552 29.630 0.00 0.00 41.43 1.98
921 930 8.840833 TTCATAGTGCAACAAATACAAGTAGA 57.159 30.769 0.00 0.00 41.43 2.59
922 931 8.177663 CCTTCATAGTGCAACAAATACAAGTAG 58.822 37.037 0.00 0.00 41.43 2.57
924 933 6.714810 TCCTTCATAGTGCAACAAATACAAGT 59.285 34.615 0.00 0.00 41.43 3.16
925 934 7.144722 TCCTTCATAGTGCAACAAATACAAG 57.855 36.000 0.00 0.00 41.43 3.16
926 935 7.517614 TTCCTTCATAGTGCAACAAATACAA 57.482 32.000 0.00 0.00 41.43 2.41
927 936 6.349280 GCTTCCTTCATAGTGCAACAAATACA 60.349 38.462 0.00 0.00 41.43 2.29
928 937 6.030228 GCTTCCTTCATAGTGCAACAAATAC 58.970 40.000 0.00 0.00 41.43 1.89
930 939 4.768968 AGCTTCCTTCATAGTGCAACAAAT 59.231 37.500 0.00 0.00 41.43 2.32
932 941 3.754965 AGCTTCCTTCATAGTGCAACAA 58.245 40.909 0.00 0.00 41.43 2.83
935 944 4.905429 TGTAAGCTTCCTTCATAGTGCAA 58.095 39.130 0.00 0.00 32.47 4.08
936 945 4.551702 TGTAAGCTTCCTTCATAGTGCA 57.448 40.909 0.00 0.00 32.47 4.57
937 946 5.118990 TCATGTAAGCTTCCTTCATAGTGC 58.881 41.667 0.00 0.00 32.47 4.40
938 947 7.171167 CAGATCATGTAAGCTTCCTTCATAGTG 59.829 40.741 0.00 0.00 32.47 2.74
939 948 7.147585 ACAGATCATGTAAGCTTCCTTCATAGT 60.148 37.037 0.00 0.00 41.60 2.12
940 949 7.171167 CACAGATCATGTAAGCTTCCTTCATAG 59.829 40.741 0.00 0.89 41.41 2.23
941 950 6.988580 CACAGATCATGTAAGCTTCCTTCATA 59.011 38.462 0.00 0.00 41.41 2.15
942 951 5.821470 CACAGATCATGTAAGCTTCCTTCAT 59.179 40.000 0.00 1.38 41.41 2.57
943 952 5.181009 CACAGATCATGTAAGCTTCCTTCA 58.819 41.667 0.00 0.00 41.41 3.02
1161 1177 3.374402 CCGCCACCGACAGTCTCT 61.374 66.667 0.00 0.00 36.29 3.10
1165 1181 3.991051 CTCACCGCCACCGACAGT 61.991 66.667 0.00 0.00 36.29 3.55
1245 1261 0.951558 GCTTCGGCTTGTTCTTGGAA 59.048 50.000 0.00 0.00 38.08 3.53
1470 1486 2.759973 AGGATCTCGAAGCGGCCA 60.760 61.111 2.24 0.00 0.00 5.36
1851 1876 4.753662 TAGGGAGCGCGGGAGTGT 62.754 66.667 8.83 0.00 43.67 3.55
1876 1901 4.557605 CCATTGCCGCGCCATCAC 62.558 66.667 0.00 0.00 0.00 3.06
2142 2177 6.084326 TGGAGAAATTAAGCAGAACCAAAC 57.916 37.500 0.00 0.00 0.00 2.93
2144 2179 6.723298 TTTGGAGAAATTAAGCAGAACCAA 57.277 33.333 0.00 0.00 33.92 3.67
2145 2180 6.295236 CCATTTGGAGAAATTAAGCAGAACCA 60.295 38.462 0.00 0.00 37.39 3.67
2146 2181 6.101997 CCATTTGGAGAAATTAAGCAGAACC 58.898 40.000 0.00 0.00 37.39 3.62
2147 2182 5.578336 GCCATTTGGAGAAATTAAGCAGAAC 59.422 40.000 0.00 0.00 37.39 3.01
2148 2183 5.337491 GGCCATTTGGAGAAATTAAGCAGAA 60.337 40.000 0.00 0.00 37.39 3.02
2149 2184 4.160252 GGCCATTTGGAGAAATTAAGCAGA 59.840 41.667 0.00 0.00 37.39 4.26
2150 2185 4.081531 TGGCCATTTGGAGAAATTAAGCAG 60.082 41.667 0.00 0.00 37.39 4.24
2164 2267 3.446161 AGTTCATCACATCTGGCCATTTG 59.554 43.478 5.51 9.94 0.00 2.32
2171 2274 7.372714 TGAATTTTGAAGTTCATCACATCTGG 58.627 34.615 6.36 0.00 29.93 3.86
2172 2275 8.294577 TCTGAATTTTGAAGTTCATCACATCTG 58.705 33.333 6.36 6.58 34.18 2.90
2176 2279 6.039605 TGCTCTGAATTTTGAAGTTCATCACA 59.960 34.615 6.36 0.00 34.18 3.58
2263 2369 4.769688 CAACAATCACATGCTAGGGACTA 58.230 43.478 0.00 0.00 41.75 2.59
2264 2370 3.614092 CAACAATCACATGCTAGGGACT 58.386 45.455 0.00 0.00 46.37 3.85
2265 2371 2.098117 GCAACAATCACATGCTAGGGAC 59.902 50.000 0.00 0.00 37.12 4.46
2406 2520 3.305471 GGACCAACTGACAGTAGTCTGAC 60.305 52.174 25.98 13.88 45.20 3.51
2407 2521 2.891580 GGACCAACTGACAGTAGTCTGA 59.108 50.000 25.98 0.00 45.20 3.27
2408 2522 2.028930 GGGACCAACTGACAGTAGTCTG 60.029 54.545 25.98 15.06 45.20 3.51
2409 2523 2.249139 GGGACCAACTGACAGTAGTCT 58.751 52.381 25.98 5.42 45.20 3.24
2410 2524 1.968493 TGGGACCAACTGACAGTAGTC 59.032 52.381 22.02 22.02 45.19 2.59
2411 2525 1.971357 CTGGGACCAACTGACAGTAGT 59.029 52.381 8.91 9.67 0.00 2.73
2412 2526 2.248248 TCTGGGACCAACTGACAGTAG 58.752 52.381 8.91 6.27 0.00 2.57
2413 2527 2.391926 TCTGGGACCAACTGACAGTA 57.608 50.000 8.91 0.00 0.00 2.74
2414 2528 1.625818 GATCTGGGACCAACTGACAGT 59.374 52.381 1.07 1.07 0.00 3.55
2415 2529 1.905215 AGATCTGGGACCAACTGACAG 59.095 52.381 0.00 0.00 0.00 3.51
2416 2530 1.902508 GAGATCTGGGACCAACTGACA 59.097 52.381 0.00 0.00 0.00 3.58
2442 2556 1.470098 GCTTGCACTGGATCGAAACAT 59.530 47.619 0.00 0.00 0.00 2.71
2517 2631 1.787847 CACCTTCACATTCGTCGCC 59.212 57.895 0.00 0.00 0.00 5.54
2550 2664 2.891941 GATCTCCATTGCCACCGCCA 62.892 60.000 0.00 0.00 0.00 5.69
2589 2708 2.164827 CAGTAACCATGCATGCACATGT 59.835 45.455 25.37 17.20 44.88 3.21
2716 2838 3.476552 CATAACAACGGGGCATGACTAT 58.523 45.455 0.00 0.00 0.00 2.12
2722 2844 2.118404 CGCCATAACAACGGGGCAT 61.118 57.895 0.00 0.00 46.75 4.40
2739 2861 8.574196 AAACATTCCACTAATTTTCTGTTTCG 57.426 30.769 0.00 0.00 0.00 3.46
2785 2907 6.885376 AGTTGTCTAGCTCAGCTAACTAAGTA 59.115 38.462 10.33 0.00 40.82 2.24
2786 2908 5.712917 AGTTGTCTAGCTCAGCTAACTAAGT 59.287 40.000 10.33 4.80 40.82 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.