>input_sequence_66606
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-------------------------------------------------------ATGGCGAACCGGTGGTGGGACGGCC
ATTTGGGGCTGCCGGGCGTGGCGCCGGAGCAGCCGTCCGGCTCGTCGGGCCCCAAGGTCGAGTCGCTCGCCCTCGTCGTC
AAAGACCCTGAGACCAGCCCGACTTCCGGTGGCGGCGAGCACGCGGACGAGAACAAAGAGACTGTCGGTGGCGGTGAGCC
GCGCGATCTGGGCGCGGTGGTGCCCGCCCCGAACCGGCGGCCCCGGGGCCGGCCGCCGGGTTCCAAGAACAAGCCGAAGC
CGCCCATCTTCGTGACGCGCGACAGCCCCAACGCGCTGCGCAGCCACGTGATGGAGGTGGCCGGCGGCGCCGACGTGTGC
GACGCCATCGCGCAGTTCTCGCGCCGCCGGCAGCGCGGCGTGTGCGTGCTCAGCGGCGCCGGGACCGTGGCCAACGTCGC
GCTGCGCCAGCCGTCGGCCCCCGGCGGAGCCGTGGTGGCCCTCCATGGCCGCTTCGAGATCCTCTCGCTCACGGGGACCT
TCCTCCCGGGGCCCGCGCCGCCGGGGTCCACGGGGCTCACCGTGTACCTGGCCGGCGGGCAGGGGCAGGTGGTCGGCGGC
AGCGTGGTGGGCTCGCTCGTCGCCGCGGGCCCCGTCATGGTGATCGCGTCCACGTTCGCCAACGCCACCTACGAGCGCCT
GCCGCTGGAGGACGAGGACGAGGGCTCGGGCCCGCCGATGGCGCACGACCCGCTCATGGCCGGCGGCGTCCACGTCCACG
GGCACGGGCACGGGATGCCCGACCCGTCGGCG---ATGCCGATGTTCAACATGCCACCAAACAATGGGCATCT------C
GGCGGCGGCGGCGGCGACGGGTTCCCATGGGCGCCACACTCCCGCGCTCCCTACTGA-----------------------
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>chr6A_1_TraesCS6A01G399200
GGTGGTAGGAAGCCGAAAATGTCACACCCGATTAAAATTTGTTGGGGACGACGGGTAAACTGGTCATTTCACATGAGAGC
GCTAGCTGCTGCGGATCGGCCTGTTAGATTCTTACTCGTCACAACTTACACATATTAACAATTAGTGGACATGTCCAGTT
CTCTCAGCCACGAATAAAGGAGGGAGAAACTTTAGGGGTTATTTTTCACGCCTACCGAACGGCGCACTGCCACCTCAGTA
GGGGACCAGTCCAAGTGTGCGATATAGAAGAGTTTATGTGGAGTAAAGAAACGAATAGGGACCGGTTCGCTTGTATGAAT
AAAAAAAAGCCCTACTCCAGAGTGAAAATTTAACGTGTACCGGGGGATTTGAATATAGCTCGCGATTTGAATTCACATGG
GCAATAGGGGACCAATGGCCAGCCAGATCAAAGCGAAATCCGAAAAAACCCCTTAGGAGCAGCATGCATGGGGGGTGGTG
GGGGTGAGCTTAGAAGGGTGCACCTTGGATAAAAGCCTCCCTGCTTAATTAATTATTGTTGATTAGTTTATAGTGGCACC
CAAAGTCTCTCCCCAGCCTCCATCAACCCTCTTT---CTCCTCCTCCTTTCTTATACCCACTTGCATGCCTCCTCCT-CC
TCTACACACTTCAGAGAAAGCCACAGCTCCCCAATGCTTCTCTAGCTAGCCCATTATCTCATTATCTCATTATCTCTCTC
TCTCTCTAGCTAGCTAGATCACAGGTGCAACTTGGTCTCCTAGCTAGATTCATCTTCAAGGTATGCAAATTGAATATGTG
CTCATGCTTGTGCATTAGATCTCCCCAAATATTTGTATCCATACAAAAATCTCTTCTCCCTTTCTGCCCTTTTCTTATTG
TGAGAGGAGAGGATAGACAA----ATTCATCTTGTTGTTTTTCTTATGATCTACTTGTATTTGTTGCACTATGAAGGAAG
CTTACATGATCTGTGTGT-------TTGTGCTTGCATGTGGTGACCGAAGACTTCATGGCGAACCGGTGGTGGGACGGCC
ATTTGGGGCTGCCGGGCGTGGCGCCGGAGCAGCCGTCCGGCTCGTCGGGCCCCAAGGTCGAGTCGCTCGCCCTCGTCGTC
AAAGACCCTGAGACCAGCCCGACTTCCGGTGGCGGCGAGCACGCGGACGAGAACAAAGAGACTGTCGGTGGCGGTGAGCC
GCGCGATCTGGGCGCGGTGGTGCCCGCCCCGAACCGGCGGCCCCGGGGCCGGCCGCCGGGTTCCAAGAACAAGCCGAAGC
CGCCCATCTTCGTGACGCGCGACAGCCCCAACGCGCTGCGCAGCCACGTGATGGAGGTGGCCGGCGGCGCCGACGTGTGC
GACGCCATCGCGCAGTTCTCGCGCCGCCGGCAGCGCGGCGTGTGCGTGCTCAGCGGCGCCGGGACCGTGGCCAACGTCGC
GCTGCGCCAGCCGTCGGCCCCCGGCGGAGCCGTGGTGGCCCTCCATGGCCGCTTCGAGATCCTCTCGCTCACGGGGACCT
TCCTCCCGGGGCCCGCGCCGCCGGGGTCCACGGGGCTCACCGTGTACCTGGCCGGCGGGCAGGGGCAGGTGGTCGGCGGC
AGCGTGGTGGGCTCGCTCGTCGCCGCGGGCCCCGTCATGGTGATCGCGTCCACGTTCGCCAACGCCACCTACGAGCGCCT
GCCGCTGGAGGACGAGGACGAGGGCTCGGGCCCGCCGATGGCGCACGACCCGCTCATGGCCGGCGGCGTCCACGTCCACG
GGCACGGGCACGGGATGCCCGACCCGTCGGCG---ATGCCGATGTTCAACATGCCACCAAACAATGGGCATCT------C
GGCGGCGGCGGCGGCGACGGGTTCCCATGGGCGCCACACTCCCGCGCTCCCTACTGATGGGTGATGGCGCGGCAATGGCG
AAATGGC--GTGG---TGCATGCTGCATGGTTACTGTTCCATTGGAGTCACTTGGCGCCATTAGCTAGGTTAGTACATAT
GACGATCCAAGCTATCTAGTGGTGATTAATTAGAGCGAATTCGTACTGCTACTTAGTTTCT--TATGTTGTTATGGTCAA
ATAATTTTCTAATTTGCTGGTGTGTTTATTGTTGT---CTACTGAATTATCAACTGAGCTAGAGATATAGCTAGCTCTGG
TCAATTCATGCAATGTGTTTGGTTC-------------------------------------------------------
-------------TGCTTAATTTCTCCAAATGGCCAGATGTGATGAACTTCAAAATTCAGAGCAAACTTTTGTTTGTTCT
CTTGTTTGGATTTGTTTACTGCTACTTGTTCT---AGTCCCTACTCCCTAGTCCCTAGCATGTGATTGTTGCTAAGTTAT
TCCGAAGGAACACACGCATTCATACATGCATGATAG--------TAACCAGTATATAGCACAACACTTTTAGTACTGTAG
CTAGTTTGTTGATCAAGTATAGTTAGTAAGTAGCTTGGTGTCAGACTACTGTCAGTTGGTCCCAGATCTCTCATGATGTT
TCGATCCAGTGCAAGCTCTTTACAATGGTCCCCCATATTTTTTTAGTTTGAACTTAATTTGATTGGATACGGCGACGAAT
GTGAAGGTGCATCTGTAGCTCATT-----GGCGGTGGCAATGGAGATCCATAGCACAAGTGGCAATGACATGTGCATGCA
TGGTTACTGTTCCATTGGATCAGAGAAG---ATAGCCCGATGTGTGGATTTTCGCACGCGATTAGCTAGGTTAGTACCTA
TGATTGATGATCAGATGATGATTAATTAGGCTCATGCATAGTCATGCCCCGTTGTTATGGCGAAACAGAAAATTAGTGGA
ATGTTTATGTGTTCATTAATCGTTTATACTTAGTTAGCTGAGCTAGACAACTATAGATCGATCATATTGGATAATAACTG
TAGATATAGCTATCTCAGTCGGATCAATTTCACG----------------------------------------------
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-------------------------
>chr6D_1
GGTGGTAGGAAGCCGAAAATGTCATGCCCGATTTAAATTTGTTGGAGACGAC-GGTAAATTGGTCATTTCACATGAGAGC
GCTAGTTGTTGCGGATCGACCTGTTAGATTCTTACTCGTCGCAACTTACACATATTAACAATTAGTGGACATGCCCAGTT
CTCTCAGCCACGAATAAAGGAGGGAGAAACTTTAGGGATTATTTTGCACGTCTACCGAACGGCGCAGCGCCACCTCAGTA
GGGGACCAGTCCAAGTGTACGATATAGAAAAGTTTATGTGGAGTAAAGAAGCGAATAGG-ACCGGTTCGCTTATATGAAT
-AAAAAAAGCCCTACTCCAGAGTAAAATTTTAACATGTACCGGGC-ATTTGAATATAGCTCGCGATTTGAATTCACATGG
GCAATAGGGGACCAATGGCCAGCCAGATCAAAGCAAAATCCGAAAA-ACCCCTTAGGAGGAGCATGCATGGGGCGTGGTG
TGGGCAAGTTTGGAAGGGTGCACCTTGGATAAAAGGCTCCCTGCTTAATTAATTATTGTTGATTAGTTTATAGTGGCACC
CAAAGTCTCTCCCCAGCCTCCATCAACCCTCTTT---CTCCTCCTCCTTTCTTATACCCACTTGCATGCCTCCTC-T-CC
TCTACACACTTCAGAGAAAGCCACAGCTCCCCAATGCTTCTCTAGCTAGCTCATTATCTCATTCTCTCTATCTCTCTCT-
-CTAGA-------CTAGATCACAGGTGCAACTTGGTCTCCTAG----ATTCATCATCAAGGTATGCAAATTGAATATGTG
CTCATGCTTGTGCATTAGATCTCCCCAAATATTTGTATCCTTACAAAAATCTCTTCTTCCTTTCTGCCCTTTTCTTATTG
TGAGAGGAGAGGATAGACAA----ATTCATCTTGCTGTTTTTCTTATGTGTTCT---------------GTGGAAGGAAG
CTTACATGATCTGTGTGT-------TTGTGCTTGCATGTGGTGACCGAAGACTTCATGGCGAACCGGTGGTGGGACGGCC
ATTTGGGGCTGCCGGGCGTGGCGCCGGAGCAGCCGTCCGGCTCGTCGGGCCCCAAGGTCGAGTCGCTCGCCCTCGTCGTC
AAGGACCCTGAGACCAGCCCGACGTCCGGTGGCGGCGAGCACGCGGACGAGAACAAGGAGGCTGTCGGTGGCGGCGAGCC
GCGCGATCTGGGCGCGGTGGTGCCGGCCCCGAACCGGCGGCCCCGGGGCCGGCCGCCGGGGTCCAAGAACAAGCCGAAGC
CGCCCATCTTCGTGACGCGCGACAGCCCCAACGCGCTGCGCAGCCACGTGATGGAGGTGGCCGGCGGGGCCGACGTGTGC
GACGCCATCGCGCAGTTCTCGCGCCGCCGCCAGCGCGGCGTGTGCGTGCTCAGCGGCGCCGGGACCGTGGCCAACGTGGC
GCTGCGCCAGCCGTCGGCCCCTGGCGGCGCCGTGGTGGCCCTCCACGGCCGCTTCGAGATCCTCTCGCTCACCGGGACCT
TCCTGCCGGGGCCCGCGCCGCCGGGGTCCACGGGGCTCACCGTGTACCTGGCCGGCGGGCAGGGGCAGGTGGTGGGCGGC
AGCGTGGTGGGCTCTCTCGTCGCCGCGGGCCCCGTCATGGTGATCGCGTCCACGTTCGCCAACGCCACCTACGAGCGCCT
GCCGCTGGAGGACGAGGACGAGGGCTCGGGCCCGCCGATGGCGCACGACCCGCTCATGGCCGGCGGCATCCACGGGCACG
GGCACGGGCACGGGATGCCCGACCCGTCGGCGGCGATGCCGATGTTCAACATACCACCAAACAACGGGCATCT-------
--CGGCGGCGGCGGCGACGGGTTCCCATGGGCGCCGCACTCCCGCGCTCCCTAC-------TGATGGCGCGGCAATGGCG
AAATGGCGCGTGG---TGCATGCTGCATGGTTACTGTTCCATTGGAGTCACTTGGCGCCATTAGCTAGGTTAGTACATAT
GACGATCCAAGCTATCTAGTGGTGATTAATTAGAGCGAATTCGTACTGCTACTTAGTTTCT--TATGTTGTTATGGTCAA
ATAATTTTCTAATTTGCTGGTGTGTTTATTGTTGT---CTACTACTGAATCAACTGAGCTAGAGATATAGCTAGCTCTGG
TCAATTCATGCAATGTTTGGTTAATTCATGGAG---TTAATGTTTGGTTCCTCATCCATCCGTGATCCGTCCATCG----
------ATATATATGCTTAATTTCTCTAAATGGTTAGAGGTGATGAACTTCAAAATTCAGAGCAAACTTTTGTTTGTTCT
CTTGTTTGGATTTGTTTACTGCTACTTGTTCT---AGTCCCTAC-------TCCCTAGCATGTGATTGTTGCCAAGTTAT
TCCGAAGGAACACACGCATTCATACATGCATGATAGTAAT----TAACCAGCATATAGCACAACACTTTTAGT---GTAG
CTAGTTTGTTGATCAAGTATAGTTAGTAAGTAGCTTGGT-----------GTCAGTTGGTCCCAGATCTCTCACGTTGTT
TCGATCCAGTGCAAGCTCTTTTCAATGGTCCCCATG--TTTTTTAGTTTGAACTTAATTTGCTTGGATACCGCGACGAAT
GTGAATGTGCATCTGCAGCTCATCTCGTCGGCGATGGCAATGGAGATCCATAGCACAAGTGGCAATGGCATGTGCATGCA
TGGTTACTGTTCCATTGGATCAGAGAAG---ATAGCCCGATGTATGGATTTCCGCACGCGGTTAGCTAGGTTAGTACCTA
TGATTGATGATCAGATGATGATTAATTAGGCTCATGCGTAGTCGTGCCCTGTTGCTATGGTGAAAAAGAAAATTAGTGGA
ATGTTTGTGTGTTTATTAATCGCTTA--CTTAGTTAGCTGAGCTAGCCAACTATAGATCGATCATATTGGATAGTAATTG
TAGATATAGCTATCTCAGTCGAATCAATTTCATGCACTTTACGTTTGGTTCCTCGTTCGTCGATCCATATATATATATGC
TTAATTTCTCTAAATGGTTAGGGGTGATGAACTGCAAAATTCAGAGCAAACTTTTGTTTGTTCTCTTATTTGGATGTGTT
TCTTGTTACTTGTGCTGGTCTCTAGCATATGGTTGTTGCTGAATTATCCAAAACACCGGCATTTATACGGGCATGATGTT
ACTATATAACACAACACTTTTAGTGCAATTAGTTTGTTGATCAAGTCTAGTTAGATAAGTAGCTTGGTGTC---------
--------------------------------------------------------------------------------
-------------------------
>chr6B_47
----------------------------------------------GACGATGGGTAAATTGATCATTTCACATGAGAGC
GCTAGCTACTGTGGATCGACCTATTAGATTCTTACTCGTCACAACTTACACATATTAACAATCAGCGGACATGCCCAGTT
CTCTCAGCCACGAATAAAGGGGAGAGAAACTTTAGGGATTATTTTGCACGCCTACCGAACGGCGCACCGCCACCTCAGTA
GGGGACCAGTCCAAGTGTGCGATATAGAAGAGTTTATGTGGAGTAAAGAAACGAATAGGGACCGGTTCGCTTACACGAAT
-AAAAAAAGCCCTACTCCAGAGTGAAATTTTAACGTGTACCGGGGGATTTGAATATAGCCCGCGATTTGAATTCACATGG
GCAATAGGGGACCAATGGCCAGCCAGATCAAAGCGAAATCCGAAAA-ACCCCTTAGTAGGAGCATGCTTGGGGGGTGGTG
GGGGTGAGCTTAGAAGGGTGCACCTTGGATAAAAGGCTCCCTGCTTAATTAATTATTGTTGATTAGTTTATAGTGGCACC
CAAAGTCTCTCCCCAGCCTCCATCAACCCTCTTTATCCTCCTCCTCCTTTCTTATACCCACTTGCATGCCTCCTCCTCCC
TCTACACACTTCAGAGAAAGCCACAGCTCCCCAATGCTCCTCTAGCTACCTCATTATCTCTCTCTCTCTCTAGCTAGCTA
GCTAGA-------CTAGATCACAGGTGCAACTTGGTCTCCTAG----ATTCATCTTCAAGGTATGCAAATTGAATATGTG
CTTGTGTTTGTGCATTAGATCTCCCCAAATATTTGTATCCTTACAAAAATCTCTTCCTCCTTTCTGCCCTTTTCTTATTG
TGAGAGGAGAGGGTAGATAAATTCATTCATCTTGCTGTTTTTCTTGTGTGTTCTGCTTGTGTGGATATGGTGGAAGGAAG
CTTACATGATCTGTGTGTGTTTGTGTTGTGCTTGCATGTGGTGACCGAAGACTTCATGGCGAACCGGTGGTGGGACGGCC
ATTTGGGGCTGCCGGGCGTCGCGCCGGAGCAGCCGTCCGGCTCGTCGGGCCCCAAGGTCGAGTCGCTCGCGCTCGTTGTC
AAAGATTCTGAGACCAGCCCGACGTCCGGTGGCGGCGAGCACGCGGACGAGAACAAGGACGCTGTCGGTGGCGGCGAGCC
GCGCGATCTGGGCGCGGTGGTGCCCGCCCCGAACCGGCGGCCCCGGGGCCGGCCGCCGGGGTCCAAGAACAAGCCGAAGC
CGCCCATCTTCGTGACGCGCGACAGCCCCAACGCGCTGCGCAGCCACGTGATGGAGGTGGCCGGCGGCGCCGACGTGTGC
GACGCCATCGCGCAGTTCTCGCGCCGCCGGCAGCGGGGCGTGTGCGTGCTCAGCGGCGCCGGGACCGTGGCCAACGTGGC
GCTGCGCCAGCCGTCGGCCCCCGGCGGCGCCGTGGTGGCCCTCCACGGCCGCTTCGAGATCCTCTCGCTCACGGGGACCT
TCCTCCCGGGGCCCGCGCCGCCGGGGTCCACGGGGCTCACCGTGTACCTGGCCGGCGGGCAGGGGCAGGTGGTCGGCGGC
AGCGTGGTGGGCTCGCTCGTCGCCGCGGGCCCCGTCATGGTGATCGCGTCCACGTTCGCCAACGCCACCTACGAGCGCCT
GCCGCTGGAGGACGAGGACGAGGGCTCGGGCCCGCCGATGGCGCACGACCCGCTCATGGCCGGCGGCGTCCACGTCCACG
GGCACGGGCACGGGATGCCCGACCCGTCGGCGGCGATGCCGATGTTCAACATGCCACCGAACAACGGGCATCTCGGCGGC
GGCGGCGGCGGCGGCGACGGGTTCCCATGGGCGCCGCACTCCCGCGCTCCCTACTGATGGCGC---GCACGGCAATGGCG
AAATGGCGTGGTGCACTGCATGCTGCATGGTTACTGTTCCATTGGAGTCACTTGGCGCCATTAGCTAGGTTAGTACATAT
GACGATCCAAGCTATCTAGTGGTGATTAATTAGAGCGAATTCGTACTGCTACTTAGTTTCTTATATGTTGTTATGGTCAA
ATAATTTTCTAATTTGCTGGTGTGTTTATTGTTGTCTACTACTGAATTATCAACTGAGCTAGAGATATAGCTAGCTCTGG
TCAATTCATGCAATGTTTGGTTAATTCATCATGGAATTAATGTTCAGTTCCTCATCCATCCGTGATCCGTCGATCGATAT
ATATATATATATATGCTTAATTTCTCTAAATGGTTAGGGGTGATGAACTTCAAAATTCAGAGCAAACTTTTGTTTGTTCT
CTTGTTTGGATTTGTTTACTGCCACTTGTTCTTCTAGTCCCTAC-------TCCCTAGCATGTGATTGTTGCTAAGTTAT
TCCCAAGGAACACACGCATTCATACATGCATGATAGTAAGTTAGTAACCAGTATATAGCACAACACTTTTAGTACTGTGG
CTAGTTTGTTGATCAAGTATAGTTAGTAAGTAGCTTGGT-----------GTCAGTTGGTCCCAGATCTCTCATGCTGTT
TCGATCCAGTGCAAGCTCTTTACAATGGTCCCCCATATTTTTTTAGTTTGAACTTAATTTGATTGGGTACCGCGACGAAT
GCGAAGGTGCATCTGTAGCTC-----GTCCGCGACGGCAATGGAGATCTATAGCACAAGTGGCAATGTCATGTGCATGCA
TCGTTACTGTTCCATTGGATCAGAGAAGCAGATAGCTCGATGTGCGGATTTTCACACGCAATTAGCTAGGTTGGCGCCTA
TGGTTGATGATCAGATGATGATTAATTAGGCTCATGCGTAGTCGTGCCCCGTTGTTATGGTGAAACAGAAAATTAGTGGA
ATGTTTGTGTGTTCGTTAATCGTCTA--CTTAGTTAGCTGAGCTAGCCAACTATAGATCGATCATATTGGATAATAACTG
GAGATATAACTATCTCAGTTGGATCAATTTCATGCACTTTATGTTTGGTTCCTCGTTTGTCGATCCAC----ATATATGC
TTAATTTCTCTAAATGGTTAGGGGTGATGAACTGCAAAATTCAGAGCAAACTTTTGTTTGTTCTCTTATTTGGATGTGTT
TCTCGTTACTTGTGCTGTTCTCTAGCATATGGTTGTTGCTGAATTATCCAAAACACCATCATTTATACGTGCATGATGTT
ACTACATAACACAACACTTTTAGTGCAGTGAGTTTGTTGAT-AAGTCTAGTTAG-TAAGTAGCTTGGTGTCAATTGGTCC
CAGATCTCCCACACTATCATCTCTGAATGCTAGCTCTTTTTATTGGTCCCCCATGTTTCCGAATTTGAACTTAATTTTCT
TGGATACCGCAATGAAGGTCAAGGT
>SNPs
------------------------SS-------S-----------S-------------S--------------------
------------------S------------------------------------------------------S------
-------------------------------------S-------S---------------------S------------
------------------------------------------------------------------------S-------
S--------------------------S----------------------------------------------------
----------------------------------------------S------------S--------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------------S----SS---------S
S--SSSSSSSSSS------------------------------SSSS---------------------------------
----------------------------------------S----------------S----------------------
----------------------------------S-------------SSS-SSSSS-S-S--SSSSSSSSS--------
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-----------------------S--------------------------------S---S-------------S-----
------------------------------------------------------------S-------------------
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-----------------------------------------------------------------------------S--
---------------------------S-----------------S----------------------------------
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----------------------------------------------------------------S---------------
-----------------------------------S------------------------S-------------------
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----------------S-SSSSSSS-------------------------------------------------------
--------------------------S------SS---S-----------------------------------------
--------------------------------------------SSSSSSS-----------------------------
--------------------------------------------------------------------------------
---------------------------------------SSSSSSSSSSS-------------------------S----
----------------------------------------------------------------------S---------
-----------------------S---------S---------------------------------S------------
--------------------------------------------------------------------------------
-------------------------------------S-----S----------------S-------------------
------S-------------------SS------------------S---------------------------------
--------------------------------S-----------------------------------------------
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>forward_313
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-----------------------------------------------------AATAGGGACCGGTTCGCTTG-------
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>reverse_1261
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------------------------------------------------------------TTCCAAGAACAAGCCGAAGC
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>forward_1181
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-----------------------------------------CGCGGACGAGAACAAAGAGA-------------------
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>reverse_2556
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------ATGTT
TCGATCCAGTGCAAGC----------------------------------------------------------------
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-------------------------
