Multiple sequence alignment - TraesCS6A01G391300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G391300 chr6A 100.000 2396 0 0 1 2396 606093973 606096368 0.000000e+00 4425.0
1 TraesCS6A01G391300 chr6D 93.357 1415 53 15 1 1409 460220048 460221427 0.000000e+00 2054.0
2 TraesCS6A01G391300 chr6D 96.839 348 11 0 2049 2396 409333927 409333580 1.230000e-162 582.0
3 TraesCS6A01G391300 chr6D 89.538 411 38 4 1597 2003 392524772 392525181 1.270000e-142 516.0
4 TraesCS6A01G391300 chr6D 77.078 746 117 27 666 1396 460284242 460284948 4.830000e-102 381.0
5 TraesCS6A01G391300 chr6D 77.058 741 121 25 666 1396 460317165 460316464 4.830000e-102 381.0
6 TraesCS6A01G391300 chr6D 93.182 44 3 0 733 776 460286736 460286779 5.530000e-07 65.8
7 TraesCS6A01G391300 chr6B 87.370 958 87 16 654 1592 700906178 700907120 0.000000e+00 1068.0
8 TraesCS6A01G391300 chr6B 91.813 513 39 2 1032 1541 700647674 700648186 0.000000e+00 712.0
9 TraesCS6A01G391300 chr6B 100.000 29 0 0 1321 1349 700960892 700960920 1.000000e-03 54.7
10 TraesCS6A01G391300 chr3D 98.563 348 5 0 2049 2396 143158471 143158124 1.220000e-172 616.0
11 TraesCS6A01G391300 chr3D 89.713 418 31 2 1597 2003 545256791 545256375 7.590000e-145 523.0
12 TraesCS6A01G391300 chr3D 89.524 420 30 5 1597 2004 6302297 6302714 9.820000e-144 520.0
13 TraesCS6A01G391300 chr3D 89.383 405 39 3 1597 1999 293807994 293807592 7.640000e-140 507.0
14 TraesCS6A01G391300 chr5D 98.286 350 6 0 2047 2396 35660287 35660636 4.380000e-172 614.0
15 TraesCS6A01G391300 chr2D 97.994 349 7 0 2048 2396 575332788 575333136 7.320000e-170 606.0
16 TraesCS6A01G391300 chr5A 97.414 348 9 0 2049 2396 287619229 287618882 5.700000e-166 593.0
17 TraesCS6A01G391300 chr7D 97.414 348 8 1 2049 2396 579996412 579996066 2.050000e-165 592.0
18 TraesCS6A01G391300 chr4B 96.264 348 13 0 2049 2396 117077215 117076868 2.670000e-159 571.0
19 TraesCS6A01G391300 chr4B 96.264 348 13 0 2049 2396 117098565 117098218 2.670000e-159 571.0
20 TraesCS6A01G391300 chrUn 95.977 348 14 0 2049 2396 361776442 361776095 1.240000e-157 566.0
21 TraesCS6A01G391300 chr3A 89.216 408 38 6 1597 2000 492044045 492043640 2.750000e-139 505.0
22 TraesCS6A01G391300 chr5B 89.163 406 37 6 1597 2002 16772551 16772949 1.280000e-137 499.0
23 TraesCS6A01G391300 chr5B 89.163 406 37 6 1597 2002 16782303 16782701 1.280000e-137 499.0
24 TraesCS6A01G391300 chr5B 87.775 409 38 9 1594 1998 494034704 494034304 3.610000e-128 468.0
25 TraesCS6A01G391300 chr2A 86.861 411 45 8 1595 2000 528266230 528265824 3.630000e-123 451.0
26 TraesCS6A01G391300 chr2A 77.594 424 77 12 1602 2013 659894011 659894428 8.560000e-60 241.0
27 TraesCS6A01G391300 chr2B 78.353 425 77 10 1602 2013 607539953 607540375 6.570000e-66 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G391300 chr6A 606093973 606096368 2395 False 4425.0 4425 100.000 1 2396 1 chr6A.!!$F1 2395
1 TraesCS6A01G391300 chr6D 460220048 460221427 1379 False 2054.0 2054 93.357 1 1409 1 chr6D.!!$F2 1408
2 TraesCS6A01G391300 chr6D 460316464 460317165 701 True 381.0 381 77.058 666 1396 1 chr6D.!!$R2 730
3 TraesCS6A01G391300 chr6D 460284242 460286779 2537 False 223.4 381 85.130 666 1396 2 chr6D.!!$F3 730
4 TraesCS6A01G391300 chr6B 700906178 700907120 942 False 1068.0 1068 87.370 654 1592 1 chr6B.!!$F2 938
5 TraesCS6A01G391300 chr6B 700647674 700648186 512 False 712.0 712 91.813 1032 1541 1 chr6B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 361 0.038166 GGAGCTGGTGTTTCCATCCA 59.962 55.0 0.0 0.0 46.12 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1655 0.031721 GTTCGTATAGGGGTGCGGAG 59.968 60.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 8.697292 GCCATGGGGTTTTTATACTTACAATTA 58.303 33.333 15.13 0.00 36.17 1.40
115 118 3.270027 TCGATTTTCCATGGTACTGCAG 58.730 45.455 13.48 13.48 0.00 4.41
117 120 3.440173 CGATTTTCCATGGTACTGCAGTT 59.560 43.478 27.06 9.41 0.00 3.16
167 170 1.349234 GGAAATGATTGCGCAACCAC 58.651 50.000 27.64 19.43 0.00 4.16
183 186 4.395625 CAACCACCATGCATGATCTATCT 58.604 43.478 28.31 3.24 0.00 1.98
184 187 5.554070 CAACCACCATGCATGATCTATCTA 58.446 41.667 28.31 0.00 0.00 1.98
185 188 5.157940 ACCACCATGCATGATCTATCTAC 57.842 43.478 28.31 0.00 0.00 2.59
186 189 4.019860 ACCACCATGCATGATCTATCTACC 60.020 45.833 28.31 0.00 0.00 3.18
187 190 4.224594 CCACCATGCATGATCTATCTACCT 59.775 45.833 28.31 0.00 0.00 3.08
188 191 5.176592 CACCATGCATGATCTATCTACCTG 58.823 45.833 28.31 8.60 0.00 4.00
189 192 5.046807 CACCATGCATGATCTATCTACCTGA 60.047 44.000 28.31 0.00 0.00 3.86
190 193 5.725338 ACCATGCATGATCTATCTACCTGAT 59.275 40.000 28.31 0.00 39.11 2.90
191 194 6.127111 ACCATGCATGATCTATCTACCTGATC 60.127 42.308 28.31 0.00 36.65 2.92
192 195 6.127140 CCATGCATGATCTATCTACCTGATCA 60.127 42.308 28.31 7.24 46.76 2.92
193 196 6.923199 TGCATGATCTATCTACCTGATCAA 57.077 37.500 8.62 0.00 46.13 2.57
194 197 7.492077 TGCATGATCTATCTACCTGATCAAT 57.508 36.000 8.62 0.00 46.13 2.57
195 198 7.328737 TGCATGATCTATCTACCTGATCAATG 58.671 38.462 8.62 8.65 46.13 2.82
196 199 7.038516 TGCATGATCTATCTACCTGATCAATGT 60.039 37.037 8.62 0.00 46.13 2.71
197 200 7.492020 GCATGATCTATCTACCTGATCAATGTC 59.508 40.741 8.62 3.14 46.13 3.06
198 201 8.751242 CATGATCTATCTACCTGATCAATGTCT 58.249 37.037 8.62 0.00 46.13 3.41
199 202 9.987726 ATGATCTATCTACCTGATCAATGTCTA 57.012 33.333 8.62 0.00 46.13 2.59
200 203 9.987726 TGATCTATCTACCTGATCAATGTCTAT 57.012 33.333 0.00 0.00 42.15 1.98
234 237 3.224269 TGGACGGACGTGGATATATCAA 58.776 45.455 14.60 0.00 0.00 2.57
249 252 6.798959 GGATATATCAAGCGACAAAAGCAATC 59.201 38.462 14.60 0.00 37.01 2.67
281 284 4.783621 AGCATGCACACCGCCGAT 62.784 61.111 21.98 0.00 41.33 4.18
306 309 2.544726 GCGACAAGCTGGCTAAAGT 58.455 52.632 0.00 0.00 44.04 2.66
307 310 0.444260 GCGACAAGCTGGCTAAAGTC 59.556 55.000 0.00 4.44 44.04 3.01
308 311 1.795768 CGACAAGCTGGCTAAAGTCA 58.204 50.000 16.71 0.00 0.00 3.41
309 312 2.350522 CGACAAGCTGGCTAAAGTCAT 58.649 47.619 16.71 0.00 0.00 3.06
310 313 2.094894 CGACAAGCTGGCTAAAGTCATG 59.905 50.000 16.71 0.00 0.00 3.07
354 357 0.467290 GGTTGGAGCTGGTGTTTCCA 60.467 55.000 0.00 0.00 45.01 3.53
358 361 0.038166 GGAGCTGGTGTTTCCATCCA 59.962 55.000 0.00 0.00 46.12 3.41
360 363 1.747355 GAGCTGGTGTTTCCATCCATG 59.253 52.381 0.00 0.00 46.12 3.66
361 364 0.174162 GCTGGTGTTTCCATCCATGC 59.826 55.000 0.00 0.00 46.12 4.06
362 365 1.548081 CTGGTGTTTCCATCCATGCA 58.452 50.000 0.00 0.00 46.12 3.96
363 366 1.203052 CTGGTGTTTCCATCCATGCAC 59.797 52.381 0.00 0.00 46.12 4.57
393 396 3.026630 TCTTTTGCTGGAGTCTACGTG 57.973 47.619 0.00 0.00 0.00 4.49
420 423 3.133691 CCATTGATCGATGACGTTCCAT 58.866 45.455 22.50 0.00 40.69 3.41
500 503 5.753921 AGAAGGTAGACACACGAAAGAAAAG 59.246 40.000 0.00 0.00 0.00 2.27
510 513 5.064198 CACACGAAAGAAAAGAAGTGGTACA 59.936 40.000 0.00 0.00 34.28 2.90
525 528 2.292016 TGGTACACAGCCGACAATTTTG 59.708 45.455 0.00 0.00 0.00 2.44
537 540 0.806884 CAATTTTGCGGCCGATGCAT 60.807 50.000 33.48 12.19 42.84 3.96
558 561 2.756207 TGTACGGCACTAGCTAATCACA 59.244 45.455 0.00 0.00 41.70 3.58
559 562 2.586258 ACGGCACTAGCTAATCACAG 57.414 50.000 0.00 0.00 41.70 3.66
580 583 8.998814 TCACAGTTAGATTAAATCCCTCCATAA 58.001 33.333 0.00 0.00 0.00 1.90
779 789 4.739716 ACAATGCAAGAGTTTGTTAAAGCG 59.260 37.500 0.00 0.00 36.65 4.68
877 889 0.914551 GCACATGTGTAGCTACGTCG 59.085 55.000 26.01 9.65 0.00 5.12
947 968 1.056660 GAGACCACACTGGGAAAGGA 58.943 55.000 0.00 0.00 43.37 3.36
948 969 1.002544 GAGACCACACTGGGAAAGGAG 59.997 57.143 0.00 0.00 43.37 3.69
1115 1140 3.466879 GTCGGTAAACGGCTTCGG 58.533 61.111 0.00 0.00 45.50 4.30
1163 1188 2.340809 CGACGGCCAGTACCACAA 59.659 61.111 2.24 0.00 0.00 3.33
1164 1189 1.079405 CGACGGCCAGTACCACAAT 60.079 57.895 2.24 0.00 0.00 2.71
1207 1232 0.035739 GGCTTCAAAGTGGTACGGGA 59.964 55.000 0.00 0.00 0.00 5.14
1349 1380 2.035783 GTGGAAGGCCTTGGGGAC 59.964 66.667 26.25 7.78 42.21 4.46
1473 1504 2.864097 GCTTTCGACTTCTCAGCAGTGA 60.864 50.000 0.00 0.00 0.00 3.41
1478 1509 3.759086 TCGACTTCTCAGCAGTGATAGTT 59.241 43.478 0.00 0.00 31.16 2.24
1538 1571 9.826574 ACGGCAGAGTATAGTTGATAAAATAAA 57.173 29.630 0.00 0.00 0.00 1.40
1582 1615 1.067142 GCATGACGGGAGCGGATAATA 60.067 52.381 0.00 0.00 0.00 0.98
1592 1625 5.864474 CGGGAGCGGATAATATGCTTATATC 59.136 44.000 0.00 0.00 39.49 1.63
1595 1628 8.030106 GGGAGCGGATAATATGCTTATATCTAC 58.970 40.741 0.00 0.00 39.49 2.59
1597 1630 7.594714 AGCGGATAATATGCTTATATCTACGG 58.405 38.462 0.00 0.00 34.80 4.02
1598 1631 7.447545 AGCGGATAATATGCTTATATCTACGGA 59.552 37.037 0.00 0.00 34.80 4.69
1599 1632 7.537991 GCGGATAATATGCTTATATCTACGGAC 59.462 40.741 0.00 0.00 0.00 4.79
1600 1633 7.745155 CGGATAATATGCTTATATCTACGGACG 59.255 40.741 0.00 0.00 0.00 4.79
1602 1635 9.814507 GATAATATGCTTATATCTACGGACGAG 57.185 37.037 0.00 0.00 0.00 4.18
1603 1636 4.966965 ATGCTTATATCTACGGACGAGG 57.033 45.455 0.00 0.00 0.00 4.63
1604 1637 4.011966 TGCTTATATCTACGGACGAGGA 57.988 45.455 0.00 0.00 0.00 3.71
1605 1638 4.586884 TGCTTATATCTACGGACGAGGAT 58.413 43.478 0.00 4.34 0.00 3.24
1606 1639 5.008331 TGCTTATATCTACGGACGAGGATT 58.992 41.667 0.00 0.00 0.00 3.01
1609 1642 4.785511 ATATCTACGGACGAGGATTTGG 57.214 45.455 0.00 0.00 0.00 3.28
1611 1644 2.022195 TCTACGGACGAGGATTTGGAG 58.978 52.381 0.00 0.00 0.00 3.86
1612 1645 0.458669 TACGGACGAGGATTTGGAGC 59.541 55.000 0.00 0.00 0.00 4.70
1613 1646 1.218047 CGGACGAGGATTTGGAGCA 59.782 57.895 0.00 0.00 0.00 4.26
1614 1647 1.084370 CGGACGAGGATTTGGAGCAC 61.084 60.000 0.00 0.00 0.00 4.40
1616 1649 1.646189 GACGAGGATTTGGAGCACTC 58.354 55.000 0.00 0.00 0.00 3.51
1617 1650 2.670635 CGAGGATTTGGAGCACTCG 58.329 57.895 0.00 0.00 43.85 4.18
1618 1651 0.807667 CGAGGATTTGGAGCACTCGG 60.808 60.000 0.00 0.00 45.11 4.63
1619 1652 0.462759 GAGGATTTGGAGCACTCGGG 60.463 60.000 0.00 0.00 0.00 5.14
1620 1653 1.201429 AGGATTTGGAGCACTCGGGT 61.201 55.000 0.00 0.00 0.00 5.28
1621 1654 1.026718 GGATTTGGAGCACTCGGGTG 61.027 60.000 12.23 12.23 45.53 4.61
1637 1670 3.546009 TGCTCCGCACCCCTATAC 58.454 61.111 0.00 0.00 31.71 1.47
1641 1835 0.031721 CTCCGCACCCCTATACGAAC 59.968 60.000 0.00 0.00 0.00 3.95
1644 1838 1.202604 CCGCACCCCTATACGAACAAT 60.203 52.381 0.00 0.00 0.00 2.71
1645 1839 2.557317 CGCACCCCTATACGAACAATT 58.443 47.619 0.00 0.00 0.00 2.32
1646 1840 2.542595 CGCACCCCTATACGAACAATTC 59.457 50.000 0.00 0.00 0.00 2.17
1650 1844 5.277828 GCACCCCTATACGAACAATTCATTC 60.278 44.000 0.00 0.00 0.00 2.67
1655 1849 8.247562 CCCCTATACGAACAATTCATTCAAAAA 58.752 33.333 0.00 0.00 0.00 1.94
1662 1856 9.284594 ACGAACAATTCATTCAAAAATATACCG 57.715 29.630 0.00 0.00 0.00 4.02
1671 1865 9.593134 TCATTCAAAAATATACCGGGAAATTTG 57.407 29.630 6.32 8.36 0.00 2.32
1672 1866 8.825745 CATTCAAAAATATACCGGGAAATTTGG 58.174 33.333 6.32 0.00 0.00 3.28
1673 1867 7.719871 TCAAAAATATACCGGGAAATTTGGA 57.280 32.000 6.32 0.46 0.00 3.53
1675 1869 8.594550 TCAAAAATATACCGGGAAATTTGGAAA 58.405 29.630 6.32 0.00 0.00 3.13
1676 1870 9.220767 CAAAAATATACCGGGAAATTTGGAAAA 57.779 29.630 6.32 0.00 0.00 2.29
1677 1871 9.794719 AAAAATATACCGGGAAATTTGGAAAAA 57.205 25.926 6.32 0.00 0.00 1.94
1699 1893 7.507797 AAAAACATGGGATTTTGGGATATCA 57.492 32.000 4.83 0.00 29.14 2.15
1700 1894 7.507797 AAAACATGGGATTTTGGGATATCAA 57.492 32.000 4.83 0.00 0.00 2.57
1701 1895 7.507797 AAACATGGGATTTTGGGATATCAAA 57.492 32.000 4.83 0.00 35.15 2.69
1702 1896 6.484364 ACATGGGATTTTGGGATATCAAAC 57.516 37.500 4.83 0.00 36.49 2.93
1703 1897 5.068987 ACATGGGATTTTGGGATATCAAACG 59.931 40.000 4.83 0.00 36.49 3.60
1704 1898 4.605183 TGGGATTTTGGGATATCAAACGT 58.395 39.130 4.83 0.00 36.49 3.99
1706 1900 4.202111 GGGATTTTGGGATATCAAACGTGG 60.202 45.833 4.83 0.00 36.49 4.94
1708 1902 3.443145 TTTGGGATATCAAACGTGGGT 57.557 42.857 4.83 0.00 32.39 4.51
1709 1903 3.443145 TTGGGATATCAAACGTGGGTT 57.557 42.857 4.83 0.00 38.22 4.11
1710 1904 2.993937 TGGGATATCAAACGTGGGTTC 58.006 47.619 4.83 0.00 34.62 3.62
1711 1905 2.294979 GGGATATCAAACGTGGGTTCC 58.705 52.381 4.83 0.00 34.62 3.62
1712 1906 2.294979 GGATATCAAACGTGGGTTCCC 58.705 52.381 4.83 0.12 34.62 3.97
1713 1907 1.937899 GATATCAAACGTGGGTTCCCG 59.062 52.381 3.27 0.00 34.62 5.14
1716 1910 0.320946 TCAAACGTGGGTTCCCGATC 60.321 55.000 3.27 0.00 34.62 3.69
1717 1911 0.321298 CAAACGTGGGTTCCCGATCT 60.321 55.000 3.27 0.00 34.62 2.75
1718 1912 1.066716 CAAACGTGGGTTCCCGATCTA 60.067 52.381 3.27 0.00 34.62 1.98
1719 1913 0.533951 AACGTGGGTTCCCGATCTAC 59.466 55.000 3.27 0.00 0.00 2.59
1720 1914 0.324091 ACGTGGGTTCCCGATCTACT 60.324 55.000 3.27 0.00 0.00 2.57
1721 1915 0.384669 CGTGGGTTCCCGATCTACTC 59.615 60.000 3.27 0.00 0.00 2.59
1722 1916 0.751452 GTGGGTTCCCGATCTACTCC 59.249 60.000 3.27 0.00 0.00 3.85
1723 1917 0.398098 TGGGTTCCCGATCTACTCCC 60.398 60.000 3.27 0.00 0.00 4.30
1724 1918 1.461911 GGGTTCCCGATCTACTCCCG 61.462 65.000 0.00 0.00 0.00 5.14
1725 1919 0.754587 GGTTCCCGATCTACTCCCGT 60.755 60.000 0.00 0.00 0.00 5.28
1726 1920 0.384669 GTTCCCGATCTACTCCCGTG 59.615 60.000 0.00 0.00 0.00 4.94
1727 1921 0.033796 TTCCCGATCTACTCCCGTGT 60.034 55.000 0.00 0.00 0.00 4.49
1728 1922 0.750546 TCCCGATCTACTCCCGTGTG 60.751 60.000 0.00 0.00 0.00 3.82
1729 1923 0.750546 CCCGATCTACTCCCGTGTGA 60.751 60.000 0.00 0.00 0.00 3.58
1731 1925 1.475280 CCGATCTACTCCCGTGTGAAA 59.525 52.381 0.00 0.00 0.00 2.69
1732 1926 2.100916 CCGATCTACTCCCGTGTGAAAT 59.899 50.000 0.00 0.00 0.00 2.17
1733 1927 3.430374 CCGATCTACTCCCGTGTGAAATT 60.430 47.826 0.00 0.00 0.00 1.82
1734 1928 4.181578 CGATCTACTCCCGTGTGAAATTT 58.818 43.478 0.00 0.00 0.00 1.82
1735 1929 4.267928 CGATCTACTCCCGTGTGAAATTTC 59.732 45.833 11.41 11.41 0.00 2.17
1737 1931 5.160607 TCTACTCCCGTGTGAAATTTCAT 57.839 39.130 23.05 7.89 39.73 2.57
1738 1932 4.935205 TCTACTCCCGTGTGAAATTTCATG 59.065 41.667 23.05 15.42 39.73 3.07
1740 1934 4.141287 ACTCCCGTGTGAAATTTCATGAA 58.859 39.130 23.05 3.38 39.73 2.57
1764 2150 6.753107 AAAATACCAGGAAACGTATTCAGG 57.247 37.500 0.00 12.65 34.78 3.86
1765 2151 2.781681 ACCAGGAAACGTATTCAGGG 57.218 50.000 17.07 15.15 0.00 4.45
1766 2152 1.339727 ACCAGGAAACGTATTCAGGGC 60.340 52.381 17.07 0.00 0.00 5.19
1768 2154 2.432444 CAGGAAACGTATTCAGGGCAA 58.568 47.619 10.99 0.00 0.00 4.52
1769 2155 2.817258 CAGGAAACGTATTCAGGGCAAA 59.183 45.455 10.99 0.00 0.00 3.68
1770 2156 3.254657 CAGGAAACGTATTCAGGGCAAAA 59.745 43.478 10.99 0.00 0.00 2.44
1771 2157 3.892588 AGGAAACGTATTCAGGGCAAAAA 59.107 39.130 10.99 0.00 0.00 1.94
1824 2210 5.827666 ACTGTTTGGGTAGATTTTTGTTCG 58.172 37.500 0.00 0.00 0.00 3.95
1825 2211 5.189659 TGTTTGGGTAGATTTTTGTTCGG 57.810 39.130 0.00 0.00 0.00 4.30
1828 2214 4.088056 TGGGTAGATTTTTGTTCGGACA 57.912 40.909 0.00 0.00 0.00 4.02
1829 2215 4.069304 TGGGTAGATTTTTGTTCGGACAG 58.931 43.478 0.00 0.00 37.04 3.51
1831 2217 5.221682 TGGGTAGATTTTTGTTCGGACAGTA 60.222 40.000 0.00 0.00 37.04 2.74
1832 2218 5.878669 GGGTAGATTTTTGTTCGGACAGTAT 59.121 40.000 0.00 0.00 37.04 2.12
1834 2220 7.094506 GGGTAGATTTTTGTTCGGACAGTATTT 60.095 37.037 0.00 0.00 37.04 1.40
1835 2221 7.961283 GGTAGATTTTTGTTCGGACAGTATTTC 59.039 37.037 0.00 0.00 37.04 2.17
1836 2222 6.909909 AGATTTTTGTTCGGACAGTATTTCC 58.090 36.000 0.00 0.00 37.04 3.13
1837 2223 6.715264 AGATTTTTGTTCGGACAGTATTTCCT 59.285 34.615 0.00 0.00 37.04 3.36
1838 2224 6.702716 TTTTTGTTCGGACAGTATTTCCTT 57.297 33.333 0.00 0.00 37.04 3.36
1840 2226 3.934068 TGTTCGGACAGTATTTCCTTCC 58.066 45.455 0.00 0.00 0.00 3.46
1843 2229 1.557832 CGGACAGTATTTCCTTCCCCA 59.442 52.381 0.00 0.00 0.00 4.96
1844 2230 2.172717 CGGACAGTATTTCCTTCCCCAT 59.827 50.000 0.00 0.00 0.00 4.00
1847 2233 4.325030 GGACAGTATTTCCTTCCCCATGAA 60.325 45.833 0.00 0.00 0.00 2.57
1848 2234 5.449553 GACAGTATTTCCTTCCCCATGAAT 58.550 41.667 0.00 0.00 31.06 2.57
1849 2235 6.410388 GGACAGTATTTCCTTCCCCATGAATA 60.410 42.308 0.00 0.00 31.06 1.75
1852 2238 7.062957 CAGTATTTCCTTCCCCATGAATAAGT 58.937 38.462 0.00 0.00 31.06 2.24
1853 2239 7.561356 CAGTATTTCCTTCCCCATGAATAAGTT 59.439 37.037 0.00 0.00 31.06 2.66
1854 2240 8.122481 AGTATTTCCTTCCCCATGAATAAGTTT 58.878 33.333 0.00 0.00 31.06 2.66
1855 2241 7.813087 ATTTCCTTCCCCATGAATAAGTTTT 57.187 32.000 0.00 0.00 31.06 2.43
1856 2242 7.625498 TTTCCTTCCCCATGAATAAGTTTTT 57.375 32.000 0.00 0.00 31.06 1.94
1886 2867 6.690194 TTTTTCACAAAATTTCACATGGGG 57.310 33.333 0.00 0.00 0.00 4.96
1891 2872 4.526262 CACAAAATTTCACATGGGGGTAGA 59.474 41.667 0.00 0.00 0.00 2.59
1892 2873 5.187576 CACAAAATTTCACATGGGGGTAGAT 59.812 40.000 0.00 0.00 0.00 1.98
1893 2874 5.784906 ACAAAATTTCACATGGGGGTAGATT 59.215 36.000 0.00 0.00 0.00 2.40
1894 2875 5.937975 AAATTTCACATGGGGGTAGATTG 57.062 39.130 0.00 0.00 0.00 2.67
1895 2876 3.380471 TTTCACATGGGGGTAGATTGG 57.620 47.619 0.00 0.00 0.00 3.16
1896 2877 1.221635 TCACATGGGGGTAGATTGGG 58.778 55.000 0.00 0.00 0.00 4.12
1897 2878 1.221635 CACATGGGGGTAGATTGGGA 58.778 55.000 0.00 0.00 0.00 4.37
1898 2879 1.568597 CACATGGGGGTAGATTGGGAA 59.431 52.381 0.00 0.00 0.00 3.97
1899 2880 2.024464 CACATGGGGGTAGATTGGGAAA 60.024 50.000 0.00 0.00 0.00 3.13
1900 2881 2.024369 ACATGGGGGTAGATTGGGAAAC 60.024 50.000 0.00 0.00 0.00 2.78
1917 3105 4.349365 GGAAACCAGGTTTGATATTCCCA 58.651 43.478 22.98 0.00 35.77 4.37
1924 3112 6.500049 ACCAGGTTTGATATTCCCAAATTTCA 59.500 34.615 0.00 0.00 36.14 2.69
1927 3115 8.096414 CAGGTTTGATATTCCCAAATTTCAGTT 58.904 33.333 0.00 0.00 35.27 3.16
1928 3116 8.659527 AGGTTTGATATTCCCAAATTTCAGTTT 58.340 29.630 0.00 0.00 35.27 2.66
1929 3117 9.283768 GGTTTGATATTCCCAAATTTCAGTTTT 57.716 29.630 0.00 0.00 35.27 2.43
1970 3173 8.615878 TGATTATTTTTCGTATAGGGATGTGG 57.384 34.615 0.00 0.00 0.00 4.17
1971 3174 8.433599 TGATTATTTTTCGTATAGGGATGTGGA 58.566 33.333 0.00 0.00 0.00 4.02
1972 3175 8.848474 ATTATTTTTCGTATAGGGATGTGGAG 57.152 34.615 0.00 0.00 0.00 3.86
1973 3176 3.746045 TTTCGTATAGGGATGTGGAGC 57.254 47.619 0.00 0.00 0.00 4.70
1974 3177 2.375014 TCGTATAGGGATGTGGAGCA 57.625 50.000 0.00 0.00 0.00 4.26
1975 3178 2.889512 TCGTATAGGGATGTGGAGCAT 58.110 47.619 0.00 0.00 41.24 3.79
1998 3201 3.636153 AGGAGCTCCTGTGTATTTTCC 57.364 47.619 34.74 2.68 46.55 3.13
1999 3202 3.185455 AGGAGCTCCTGTGTATTTTCCT 58.815 45.455 34.74 5.38 46.55 3.36
2000 3203 4.362677 AGGAGCTCCTGTGTATTTTCCTA 58.637 43.478 34.74 0.00 46.55 2.94
2001 3204 4.971924 AGGAGCTCCTGTGTATTTTCCTAT 59.028 41.667 34.74 4.14 46.55 2.57
2002 3205 6.143915 AGGAGCTCCTGTGTATTTTCCTATA 58.856 40.000 34.74 0.00 46.55 1.31
2003 3206 6.789959 AGGAGCTCCTGTGTATTTTCCTATAT 59.210 38.462 34.74 3.31 46.55 0.86
2004 3207 7.038658 AGGAGCTCCTGTGTATTTTCCTATATC 60.039 40.741 34.74 0.00 46.55 1.63
2005 3208 7.038658 GGAGCTCCTGTGTATTTTCCTATATCT 60.039 40.741 26.25 0.00 0.00 1.98
2006 3209 8.958060 AGCTCCTGTGTATTTTCCTATATCTA 57.042 34.615 0.00 0.00 0.00 1.98
2007 3210 8.808092 AGCTCCTGTGTATTTTCCTATATCTAC 58.192 37.037 0.00 0.00 0.00 2.59
2008 3211 8.808092 GCTCCTGTGTATTTTCCTATATCTACT 58.192 37.037 0.00 0.00 0.00 2.57
2010 3213 9.310449 TCCTGTGTATTTTCCTATATCTACTCC 57.690 37.037 0.00 0.00 0.00 3.85
2011 3214 8.532819 CCTGTGTATTTTCCTATATCTACTCCC 58.467 40.741 0.00 0.00 0.00 4.30
2012 3215 9.315363 CTGTGTATTTTCCTATATCTACTCCCT 57.685 37.037 0.00 0.00 0.00 4.20
2013 3216 9.670442 TGTGTATTTTCCTATATCTACTCCCTT 57.330 33.333 0.00 0.00 0.00 3.95
2016 3219 9.438228 GTATTTTCCTATATCTACTCCCTTTGC 57.562 37.037 0.00 0.00 0.00 3.68
2017 3220 7.691993 TTTTCCTATATCTACTCCCTTTGCT 57.308 36.000 0.00 0.00 0.00 3.91
2018 3221 8.792830 TTTTCCTATATCTACTCCCTTTGCTA 57.207 34.615 0.00 0.00 0.00 3.49
2019 3222 7.778185 TTCCTATATCTACTCCCTTTGCTAC 57.222 40.000 0.00 0.00 0.00 3.58
2020 3223 7.104974 TCCTATATCTACTCCCTTTGCTACT 57.895 40.000 0.00 0.00 0.00 2.57
2021 3224 8.228353 TCCTATATCTACTCCCTTTGCTACTA 57.772 38.462 0.00 0.00 0.00 1.82
2022 3225 8.676020 TCCTATATCTACTCCCTTTGCTACTAA 58.324 37.037 0.00 0.00 0.00 2.24
2023 3226 9.310449 CCTATATCTACTCCCTTTGCTACTAAA 57.690 37.037 0.00 0.00 0.00 1.85
2032 3235 9.160412 ACTCCCTTTGCTACTAAATATATGTCT 57.840 33.333 0.00 0.00 0.00 3.41
2087 3290 5.703978 CCATCATGGCGGTTTATATTTCA 57.296 39.130 0.00 0.00 0.00 2.69
2089 3292 6.094719 CCATCATGGCGGTTTATATTTCATG 58.905 40.000 0.00 0.00 33.83 3.07
2090 3293 6.294675 CCATCATGGCGGTTTATATTTCATGT 60.295 38.462 0.00 0.00 34.11 3.21
2091 3294 6.070897 TCATGGCGGTTTATATTTCATGTG 57.929 37.500 0.00 0.00 34.11 3.21
2092 3295 5.825151 TCATGGCGGTTTATATTTCATGTGA 59.175 36.000 0.00 0.00 34.11 3.58
2093 3296 5.749596 TGGCGGTTTATATTTCATGTGAG 57.250 39.130 0.00 0.00 0.00 3.51
2095 3298 5.883115 TGGCGGTTTATATTTCATGTGAGAA 59.117 36.000 0.00 0.00 0.00 2.87
2096 3299 6.545666 TGGCGGTTTATATTTCATGTGAGAAT 59.454 34.615 0.00 0.00 0.00 2.40
2097 3300 7.717436 TGGCGGTTTATATTTCATGTGAGAATA 59.283 33.333 0.00 0.00 0.00 1.75
2099 3302 9.944663 GCGGTTTATATTTCATGTGAGAATAAA 57.055 29.630 0.00 0.00 0.00 1.40
2109 3312 9.599866 TTTCATGTGAGAATAAAGATACATCGT 57.400 29.630 0.00 0.00 0.00 3.73
2110 3313 9.599866 TTCATGTGAGAATAAAGATACATCGTT 57.400 29.630 0.00 0.00 33.27 3.85
2111 3314 9.599866 TCATGTGAGAATAAAGATACATCGTTT 57.400 29.630 0.00 0.00 31.22 3.60
2112 3315 9.642312 CATGTGAGAATAAAGATACATCGTTTG 57.358 33.333 0.00 0.00 31.22 2.93
2113 3316 8.771920 TGTGAGAATAAAGATACATCGTTTGT 57.228 30.769 0.00 0.00 42.62 2.83
2114 3317 9.214957 TGTGAGAATAAAGATACATCGTTTGTT 57.785 29.630 0.00 0.00 39.87 2.83
2123 3326 9.620660 AAAGATACATCGTTTGTTAAAACATCC 57.379 29.630 0.00 0.00 45.01 3.51
2124 3327 8.330466 AGATACATCGTTTGTTAAAACATCCA 57.670 30.769 0.00 0.00 45.01 3.41
2125 3328 8.234546 AGATACATCGTTTGTTAAAACATCCAC 58.765 33.333 0.00 0.00 45.01 4.02
2126 3329 6.385649 ACATCGTTTGTTAAAACATCCACT 57.614 33.333 0.00 0.00 45.01 4.00
2127 3330 7.499321 ACATCGTTTGTTAAAACATCCACTA 57.501 32.000 0.00 0.00 45.01 2.74
2128 3331 7.932335 ACATCGTTTGTTAAAACATCCACTAA 58.068 30.769 0.00 0.00 45.01 2.24
2129 3332 8.073768 ACATCGTTTGTTAAAACATCCACTAAG 58.926 33.333 0.00 0.00 45.01 2.18
2130 3333 7.789273 TCGTTTGTTAAAACATCCACTAAGA 57.211 32.000 0.00 0.00 45.01 2.10
2131 3334 8.211116 TCGTTTGTTAAAACATCCACTAAGAA 57.789 30.769 0.00 0.00 45.01 2.52
2132 3335 8.675504 TCGTTTGTTAAAACATCCACTAAGAAA 58.324 29.630 0.00 0.00 45.01 2.52
2133 3336 8.739461 CGTTTGTTAAAACATCCACTAAGAAAC 58.261 33.333 0.00 0.00 45.01 2.78
2134 3337 9.027129 GTTTGTTAAAACATCCACTAAGAAACC 57.973 33.333 0.00 0.00 44.30 3.27
2135 3338 7.279750 TGTTAAAACATCCACTAAGAAACCC 57.720 36.000 0.00 0.00 33.17 4.11
2136 3339 6.016943 TGTTAAAACATCCACTAAGAAACCCG 60.017 38.462 0.00 0.00 33.17 5.28
2137 3340 2.781681 ACATCCACTAAGAAACCCGG 57.218 50.000 0.00 0.00 0.00 5.73
2138 3341 1.280998 ACATCCACTAAGAAACCCGGG 59.719 52.381 22.25 22.25 0.00 5.73
2139 3342 0.916809 ATCCACTAAGAAACCCGGGG 59.083 55.000 27.92 12.73 0.00 5.73
2140 3343 1.202769 TCCACTAAGAAACCCGGGGG 61.203 60.000 27.92 13.16 42.03 5.40
2141 3344 1.378119 CACTAAGAAACCCGGGGGC 60.378 63.158 27.92 13.68 39.32 5.80
2142 3345 1.540617 ACTAAGAAACCCGGGGGCT 60.541 57.895 27.92 15.98 39.32 5.19
2143 3346 1.223763 CTAAGAAACCCGGGGGCTC 59.776 63.158 27.92 17.70 39.32 4.70
2144 3347 2.266816 CTAAGAAACCCGGGGGCTCC 62.267 65.000 27.92 9.00 39.32 4.70
2153 3356 2.680965 GGGGGCTCCGATTTCCAA 59.319 61.111 0.00 0.00 0.00 3.53
2154 3357 1.000145 GGGGGCTCCGATTTCCAAA 60.000 57.895 0.00 0.00 0.00 3.28
2155 3358 1.320344 GGGGGCTCCGATTTCCAAAC 61.320 60.000 0.00 0.00 0.00 2.93
2156 3359 0.610785 GGGGCTCCGATTTCCAAACA 60.611 55.000 0.00 0.00 0.00 2.83
2157 3360 1.253100 GGGCTCCGATTTCCAAACAA 58.747 50.000 0.00 0.00 0.00 2.83
2158 3361 1.824852 GGGCTCCGATTTCCAAACAAT 59.175 47.619 0.00 0.00 0.00 2.71
2159 3362 2.233676 GGGCTCCGATTTCCAAACAATT 59.766 45.455 0.00 0.00 0.00 2.32
2160 3363 3.253230 GGCTCCGATTTCCAAACAATTG 58.747 45.455 3.24 3.24 36.25 2.32
2161 3364 3.306019 GGCTCCGATTTCCAAACAATTGT 60.306 43.478 4.92 4.92 34.60 2.71
2162 3365 4.306600 GCTCCGATTTCCAAACAATTGTT 58.693 39.130 18.13 18.13 40.50 2.83
2163 3366 4.385748 GCTCCGATTTCCAAACAATTGTTC 59.614 41.667 23.47 8.98 37.25 3.18
2164 3367 4.541779 TCCGATTTCCAAACAATTGTTCG 58.458 39.130 23.47 19.24 37.25 3.95
2165 3368 4.276183 TCCGATTTCCAAACAATTGTTCGA 59.724 37.500 23.47 18.12 37.25 3.71
2166 3369 4.616802 CCGATTTCCAAACAATTGTTCGAG 59.383 41.667 23.47 15.69 37.25 4.04
2167 3370 5.448438 CGATTTCCAAACAATTGTTCGAGA 58.552 37.500 23.47 16.70 37.25 4.04
2168 3371 5.339611 CGATTTCCAAACAATTGTTCGAGAC 59.660 40.000 23.47 14.16 37.25 3.36
2169 3372 5.568685 TTTCCAAACAATTGTTCGAGACA 57.431 34.783 23.47 11.08 37.25 3.41
2170 3373 4.545823 TCCAAACAATTGTTCGAGACAC 57.454 40.909 23.47 0.00 38.18 3.67
2171 3374 3.314080 TCCAAACAATTGTTCGAGACACC 59.686 43.478 23.47 0.00 38.18 4.16
2172 3375 3.315191 CCAAACAATTGTTCGAGACACCT 59.685 43.478 23.47 2.49 38.18 4.00
2173 3376 4.527564 CAAACAATTGTTCGAGACACCTC 58.472 43.478 23.47 0.00 38.18 3.85
2174 3377 2.767505 ACAATTGTTCGAGACACCTCC 58.232 47.619 4.92 0.00 38.18 4.30
2175 3378 1.726791 CAATTGTTCGAGACACCTCCG 59.273 52.381 0.00 0.00 38.18 4.63
2176 3379 1.254026 ATTGTTCGAGACACCTCCGA 58.746 50.000 0.76 0.00 38.18 4.55
2177 3380 0.596577 TTGTTCGAGACACCTCCGAG 59.403 55.000 0.76 0.00 38.18 4.63
2178 3381 0.536687 TGTTCGAGACACCTCCGAGT 60.537 55.000 0.00 0.00 36.04 4.18
2179 3382 0.597072 GTTCGAGACACCTCCGAGTT 59.403 55.000 0.00 0.00 36.04 3.01
2180 3383 0.879765 TTCGAGACACCTCCGAGTTC 59.120 55.000 0.00 0.00 36.04 3.01
2181 3384 0.036448 TCGAGACACCTCCGAGTTCT 59.964 55.000 0.00 0.00 36.04 3.01
2182 3385 0.882474 CGAGACACCTCCGAGTTCTT 59.118 55.000 0.00 0.00 36.04 2.52
2183 3386 2.082231 CGAGACACCTCCGAGTTCTTA 58.918 52.381 0.00 0.00 36.04 2.10
2184 3387 2.096174 CGAGACACCTCCGAGTTCTTAG 59.904 54.545 0.00 0.00 36.04 2.18
2185 3388 1.819903 AGACACCTCCGAGTTCTTAGC 59.180 52.381 0.00 0.00 0.00 3.09
2186 3389 1.819903 GACACCTCCGAGTTCTTAGCT 59.180 52.381 0.00 0.00 0.00 3.32
2187 3390 3.015327 GACACCTCCGAGTTCTTAGCTA 58.985 50.000 0.00 0.00 0.00 3.32
2188 3391 3.018149 ACACCTCCGAGTTCTTAGCTAG 58.982 50.000 0.00 0.00 0.00 3.42
2189 3392 2.025898 ACCTCCGAGTTCTTAGCTAGC 58.974 52.381 6.62 6.62 0.00 3.42
2190 3393 2.025155 CCTCCGAGTTCTTAGCTAGCA 58.975 52.381 18.83 0.00 0.00 3.49
2191 3394 2.223618 CCTCCGAGTTCTTAGCTAGCAC 60.224 54.545 18.83 5.71 0.00 4.40
2192 3395 2.423892 CTCCGAGTTCTTAGCTAGCACA 59.576 50.000 18.83 0.42 0.00 4.57
2193 3396 3.024547 TCCGAGTTCTTAGCTAGCACAT 58.975 45.455 18.83 0.00 0.00 3.21
2194 3397 3.066900 TCCGAGTTCTTAGCTAGCACATC 59.933 47.826 18.83 3.97 0.00 3.06
2195 3398 3.376540 CGAGTTCTTAGCTAGCACATCC 58.623 50.000 18.83 0.00 0.00 3.51
2196 3399 3.376540 GAGTTCTTAGCTAGCACATCCG 58.623 50.000 18.83 0.00 0.00 4.18
2197 3400 1.861575 GTTCTTAGCTAGCACATCCGC 59.138 52.381 18.83 0.00 0.00 5.54
2198 3401 0.389391 TCTTAGCTAGCACATCCGCC 59.611 55.000 18.83 0.00 0.00 6.13
2199 3402 0.941463 CTTAGCTAGCACATCCGCCG 60.941 60.000 18.83 0.00 0.00 6.46
2200 3403 2.971428 TTAGCTAGCACATCCGCCGC 62.971 60.000 18.83 0.00 0.00 6.53
2202 3405 4.529219 CTAGCACATCCGCCGCCA 62.529 66.667 0.00 0.00 0.00 5.69
2203 3406 3.814615 CTAGCACATCCGCCGCCAT 62.815 63.158 0.00 0.00 0.00 4.40
2204 3407 2.434658 CTAGCACATCCGCCGCCATA 62.435 60.000 0.00 0.00 0.00 2.74
2205 3408 1.826340 TAGCACATCCGCCGCCATAT 61.826 55.000 0.00 0.00 0.00 1.78
2206 3409 2.260869 GCACATCCGCCGCCATATT 61.261 57.895 0.00 0.00 0.00 1.28
2207 3410 1.575922 CACATCCGCCGCCATATTG 59.424 57.895 0.00 0.00 0.00 1.90
2208 3411 1.600636 ACATCCGCCGCCATATTGG 60.601 57.895 0.00 0.00 41.55 3.16
2218 3421 3.329300 CCATATTGGCTTCCCGAGG 57.671 57.895 0.00 0.00 0.00 4.63
2219 3422 0.250901 CCATATTGGCTTCCCGAGGG 60.251 60.000 0.65 0.65 0.00 4.30
2220 3423 0.890996 CATATTGGCTTCCCGAGGGC 60.891 60.000 2.58 0.00 34.68 5.19
2221 3424 1.352622 ATATTGGCTTCCCGAGGGCA 61.353 55.000 2.58 0.00 41.02 5.36
2223 3426 2.917897 TTGGCTTCCCGAGGGCAAT 61.918 57.895 11.09 0.00 45.37 3.56
2224 3427 2.830370 GGCTTCCCGAGGGCAATG 60.830 66.667 2.58 0.00 33.13 2.82
2225 3428 2.830370 GCTTCCCGAGGGCAATGG 60.830 66.667 2.58 0.00 34.68 3.16
2226 3429 2.830370 CTTCCCGAGGGCAATGGC 60.830 66.667 2.58 0.00 40.13 4.40
2227 3430 3.338250 TTCCCGAGGGCAATGGCT 61.338 61.111 6.78 0.00 40.87 4.75
2228 3431 1.983119 CTTCCCGAGGGCAATGGCTA 61.983 60.000 6.78 0.00 40.87 3.93
2229 3432 1.567208 TTCCCGAGGGCAATGGCTAA 61.567 55.000 6.78 0.00 40.87 3.09
2230 3433 1.077068 CCCGAGGGCAATGGCTAAA 60.077 57.895 6.78 0.00 40.87 1.85
2231 3434 0.682855 CCCGAGGGCAATGGCTAAAA 60.683 55.000 6.78 0.00 40.87 1.52
2232 3435 1.181786 CCGAGGGCAATGGCTAAAAA 58.818 50.000 6.78 0.00 40.87 1.94
2233 3436 1.135112 CCGAGGGCAATGGCTAAAAAC 60.135 52.381 6.78 0.00 40.87 2.43
2234 3437 1.818674 CGAGGGCAATGGCTAAAAACT 59.181 47.619 6.78 0.00 40.87 2.66
2235 3438 3.013921 CGAGGGCAATGGCTAAAAACTA 58.986 45.455 6.78 0.00 40.87 2.24
2236 3439 3.632145 CGAGGGCAATGGCTAAAAACTAT 59.368 43.478 6.78 0.00 40.87 2.12
2237 3440 4.819630 CGAGGGCAATGGCTAAAAACTATA 59.180 41.667 6.78 0.00 40.87 1.31
2238 3441 5.049405 CGAGGGCAATGGCTAAAAACTATAG 60.049 44.000 6.78 0.00 40.87 1.31
2239 3442 6.013554 AGGGCAATGGCTAAAAACTATAGA 57.986 37.500 6.78 0.00 40.87 1.98
2240 3443 6.064717 AGGGCAATGGCTAAAAACTATAGAG 58.935 40.000 6.78 0.00 40.87 2.43
2241 3444 6.062095 GGGCAATGGCTAAAAACTATAGAGA 58.938 40.000 6.78 0.00 40.87 3.10
2242 3445 6.717084 GGGCAATGGCTAAAAACTATAGAGAT 59.283 38.462 6.78 0.00 40.87 2.75
2243 3446 7.883311 GGGCAATGGCTAAAAACTATAGAGATA 59.117 37.037 6.78 0.00 40.87 1.98
2244 3447 9.284968 GGCAATGGCTAAAAACTATAGAGATAA 57.715 33.333 6.78 0.00 40.87 1.75
2269 3472 9.578439 AAAATTGCTAGATAAGAAAGTGCATTC 57.422 29.630 0.00 0.00 0.00 2.67
2270 3473 8.517062 AATTGCTAGATAAGAAAGTGCATTCT 57.483 30.769 0.00 0.00 41.34 2.40
2272 3475 7.545362 TGCTAGATAAGAAAGTGCATTCTTC 57.455 36.000 16.59 7.71 44.28 2.87
2273 3476 7.105588 TGCTAGATAAGAAAGTGCATTCTTCA 58.894 34.615 16.59 6.94 44.28 3.02
2274 3477 7.772292 TGCTAGATAAGAAAGTGCATTCTTCAT 59.228 33.333 16.59 10.06 44.28 2.57
2275 3478 8.068977 GCTAGATAAGAAAGTGCATTCTTCATG 58.931 37.037 16.59 7.37 44.28 3.07
2276 3479 7.934855 AGATAAGAAAGTGCATTCTTCATGT 57.065 32.000 16.59 7.11 44.28 3.21
2278 3481 9.624373 AGATAAGAAAGTGCATTCTTCATGTAT 57.376 29.630 16.59 6.63 44.28 2.29
2281 3484 6.327934 AGAAAGTGCATTCTTCATGTATTGC 58.672 36.000 0.00 0.00 36.23 3.56
2282 3485 4.644103 AGTGCATTCTTCATGTATTGCC 57.356 40.909 0.00 0.00 34.98 4.52
2283 3486 3.065786 AGTGCATTCTTCATGTATTGCCG 59.934 43.478 0.00 0.00 34.98 5.69
2284 3487 2.223548 TGCATTCTTCATGTATTGCCGC 60.224 45.455 0.00 0.00 34.98 6.53
2285 3488 2.033801 GCATTCTTCATGTATTGCCGCT 59.966 45.455 0.00 0.00 34.98 5.52
2286 3489 3.624900 CATTCTTCATGTATTGCCGCTG 58.375 45.455 0.00 0.00 0.00 5.18
2287 3490 1.016627 TCTTCATGTATTGCCGCTGC 58.983 50.000 0.00 0.00 38.26 5.25
2288 3491 1.019673 CTTCATGTATTGCCGCTGCT 58.980 50.000 0.70 0.00 38.71 4.24
2289 3492 0.734309 TTCATGTATTGCCGCTGCTG 59.266 50.000 0.70 0.00 38.71 4.41
2290 3493 1.096967 TCATGTATTGCCGCTGCTGG 61.097 55.000 0.70 1.93 38.71 4.85
2291 3494 1.077501 ATGTATTGCCGCTGCTGGT 60.078 52.632 0.70 0.00 38.71 4.00
2292 3495 1.097547 ATGTATTGCCGCTGCTGGTC 61.098 55.000 0.70 5.59 38.71 4.02
2293 3496 2.124736 TATTGCCGCTGCTGGTCC 60.125 61.111 0.70 0.00 38.71 4.46
2294 3497 2.669133 TATTGCCGCTGCTGGTCCT 61.669 57.895 0.70 1.25 38.71 3.85
2295 3498 1.334384 TATTGCCGCTGCTGGTCCTA 61.334 55.000 0.70 0.51 38.71 2.94
2296 3499 2.196997 ATTGCCGCTGCTGGTCCTAA 62.197 55.000 0.70 4.28 38.71 2.69
2297 3500 2.190578 GCCGCTGCTGGTCCTAAT 59.809 61.111 11.14 0.00 33.53 1.73
2298 3501 2.182842 GCCGCTGCTGGTCCTAATG 61.183 63.158 11.14 0.00 33.53 1.90
2299 3502 1.522092 CCGCTGCTGGTCCTAATGA 59.478 57.895 0.00 0.00 0.00 2.57
2300 3503 0.107703 CCGCTGCTGGTCCTAATGAA 60.108 55.000 0.00 0.00 0.00 2.57
2301 3504 1.475751 CCGCTGCTGGTCCTAATGAAT 60.476 52.381 0.00 0.00 0.00 2.57
2302 3505 2.292267 CGCTGCTGGTCCTAATGAATT 58.708 47.619 0.00 0.00 0.00 2.17
2303 3506 2.289002 CGCTGCTGGTCCTAATGAATTC 59.711 50.000 0.00 0.00 0.00 2.17
2304 3507 2.620585 GCTGCTGGTCCTAATGAATTCC 59.379 50.000 2.27 0.00 0.00 3.01
2305 3508 3.217626 CTGCTGGTCCTAATGAATTCCC 58.782 50.000 2.27 0.00 0.00 3.97
2306 3509 2.222027 GCTGGTCCTAATGAATTCCCG 58.778 52.381 2.27 0.00 0.00 5.14
2307 3510 2.222027 CTGGTCCTAATGAATTCCCGC 58.778 52.381 2.27 0.00 0.00 6.13
2308 3511 1.133915 TGGTCCTAATGAATTCCCGCC 60.134 52.381 2.27 0.00 0.00 6.13
2309 3512 1.133915 GGTCCTAATGAATTCCCGCCA 60.134 52.381 2.27 0.00 0.00 5.69
2310 3513 1.947456 GTCCTAATGAATTCCCGCCAC 59.053 52.381 2.27 0.00 0.00 5.01
2311 3514 1.843851 TCCTAATGAATTCCCGCCACT 59.156 47.619 2.27 0.00 0.00 4.00
2312 3515 2.158813 TCCTAATGAATTCCCGCCACTC 60.159 50.000 2.27 0.00 0.00 3.51
2313 3516 2.421388 CCTAATGAATTCCCGCCACTCA 60.421 50.000 2.27 0.00 0.00 3.41
2314 3517 2.442236 AATGAATTCCCGCCACTCAT 57.558 45.000 2.27 0.00 0.00 2.90
2315 3518 1.972872 ATGAATTCCCGCCACTCATC 58.027 50.000 2.27 0.00 0.00 2.92
2316 3519 0.617935 TGAATTCCCGCCACTCATCA 59.382 50.000 2.27 0.00 0.00 3.07
2317 3520 1.212688 TGAATTCCCGCCACTCATCAT 59.787 47.619 2.27 0.00 0.00 2.45
2318 3521 1.605710 GAATTCCCGCCACTCATCATG 59.394 52.381 0.00 0.00 0.00 3.07
2319 3522 0.839277 ATTCCCGCCACTCATCATGA 59.161 50.000 0.00 0.00 0.00 3.07
2320 3523 0.839277 TTCCCGCCACTCATCATGAT 59.161 50.000 1.18 1.18 0.00 2.45
2321 3524 0.394192 TCCCGCCACTCATCATGATC 59.606 55.000 4.86 0.00 0.00 2.92
2322 3525 0.395686 CCCGCCACTCATCATGATCT 59.604 55.000 4.86 0.00 0.00 2.75
2323 3526 1.607509 CCCGCCACTCATCATGATCTC 60.608 57.143 4.86 0.00 0.00 2.75
2324 3527 1.416373 CGCCACTCATCATGATCTCG 58.584 55.000 4.86 0.00 0.00 4.04
2325 3528 1.000938 CGCCACTCATCATGATCTCGA 60.001 52.381 4.86 0.00 0.00 4.04
2326 3529 2.352519 CGCCACTCATCATGATCTCGAT 60.353 50.000 4.86 0.00 0.00 3.59
2327 3530 3.661944 GCCACTCATCATGATCTCGATT 58.338 45.455 4.86 0.00 0.00 3.34
2328 3531 4.616835 CGCCACTCATCATGATCTCGATTA 60.617 45.833 4.86 0.00 0.00 1.75
2329 3532 4.624882 GCCACTCATCATGATCTCGATTAC 59.375 45.833 4.86 0.00 0.00 1.89
2330 3533 5.167121 CCACTCATCATGATCTCGATTACC 58.833 45.833 4.86 0.00 0.00 2.85
2331 3534 5.047448 CCACTCATCATGATCTCGATTACCT 60.047 44.000 4.86 0.00 0.00 3.08
2332 3535 6.092092 CACTCATCATGATCTCGATTACCTC 58.908 44.000 4.86 0.00 0.00 3.85
2333 3536 5.184864 ACTCATCATGATCTCGATTACCTCC 59.815 44.000 4.86 0.00 0.00 4.30
2334 3537 5.079643 TCATCATGATCTCGATTACCTCCA 58.920 41.667 4.86 0.00 0.00 3.86
2335 3538 5.184671 TCATCATGATCTCGATTACCTCCAG 59.815 44.000 4.86 0.00 0.00 3.86
2336 3539 4.729868 TCATGATCTCGATTACCTCCAGA 58.270 43.478 0.00 0.00 0.00 3.86
2337 3540 4.520874 TCATGATCTCGATTACCTCCAGAC 59.479 45.833 0.00 0.00 0.00 3.51
2338 3541 3.898482 TGATCTCGATTACCTCCAGACA 58.102 45.455 0.00 0.00 0.00 3.41
2339 3542 3.885901 TGATCTCGATTACCTCCAGACAG 59.114 47.826 0.00 0.00 0.00 3.51
2340 3543 3.367646 TCTCGATTACCTCCAGACAGT 57.632 47.619 0.00 0.00 0.00 3.55
2341 3544 3.280295 TCTCGATTACCTCCAGACAGTC 58.720 50.000 0.00 0.00 0.00 3.51
2342 3545 2.359531 CTCGATTACCTCCAGACAGTCC 59.640 54.545 0.00 0.00 0.00 3.85
2343 3546 1.065701 CGATTACCTCCAGACAGTCCG 59.934 57.143 0.00 0.00 0.00 4.79
2344 3547 0.824759 ATTACCTCCAGACAGTCCGC 59.175 55.000 0.00 0.00 0.00 5.54
2345 3548 0.251653 TTACCTCCAGACAGTCCGCT 60.252 55.000 0.00 0.00 0.00 5.52
2348 3551 1.153939 CTCCAGACAGTCCGCTTCG 60.154 63.158 0.00 0.00 0.00 3.79
2350 3553 1.444553 CCAGACAGTCCGCTTCGAC 60.445 63.158 0.00 0.00 0.00 4.20
2354 3557 1.402259 AGACAGTCCGCTTCGACATAG 59.598 52.381 0.00 0.00 35.07 2.23
2355 3558 1.400846 GACAGTCCGCTTCGACATAGA 59.599 52.381 0.00 0.00 35.07 1.98
2358 3561 3.119101 ACAGTCCGCTTCGACATAGATTT 60.119 43.478 0.00 0.00 35.07 2.17
2359 3562 3.865745 CAGTCCGCTTCGACATAGATTTT 59.134 43.478 0.00 0.00 35.07 1.82
2360 3563 3.865745 AGTCCGCTTCGACATAGATTTTG 59.134 43.478 0.00 0.00 35.07 2.44
2364 3567 3.780801 CGCTTCGACATAGATTTTGTTGC 59.219 43.478 0.00 0.00 0.00 4.17
2365 3568 4.668941 CGCTTCGACATAGATTTTGTTGCA 60.669 41.667 0.00 0.00 0.00 4.08
2380 3583 1.786579 GTTGCAACCAACTTCATTCGC 59.213 47.619 19.15 0.00 46.13 4.70
2381 3584 1.317613 TGCAACCAACTTCATTCGCT 58.682 45.000 0.00 0.00 0.00 4.93
2382 3585 2.499197 TGCAACCAACTTCATTCGCTA 58.501 42.857 0.00 0.00 0.00 4.26
2383 3586 2.483877 TGCAACCAACTTCATTCGCTAG 59.516 45.455 0.00 0.00 0.00 3.42
2384 3587 2.484264 GCAACCAACTTCATTCGCTAGT 59.516 45.455 0.00 0.00 0.00 2.57
2387 3590 4.124851 ACCAACTTCATTCGCTAGTAGG 57.875 45.455 0.00 0.00 0.00 3.18
2389 3592 4.142138 ACCAACTTCATTCGCTAGTAGGAG 60.142 45.833 0.00 0.00 0.00 3.69
2390 3593 4.363999 CAACTTCATTCGCTAGTAGGAGG 58.636 47.826 0.00 0.00 0.00 4.30
2391 3594 2.362717 ACTTCATTCGCTAGTAGGAGGC 59.637 50.000 0.00 0.00 0.00 4.70
2392 3595 1.329256 TCATTCGCTAGTAGGAGGCC 58.671 55.000 0.00 0.00 0.00 5.19
2393 3596 1.040646 CATTCGCTAGTAGGAGGCCA 58.959 55.000 5.01 0.00 0.00 5.36
2394 3597 1.620819 CATTCGCTAGTAGGAGGCCAT 59.379 52.381 5.01 0.00 0.00 4.40
2395 3598 1.329256 TTCGCTAGTAGGAGGCCATC 58.671 55.000 5.01 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 5.123820 CAGTACCATGGAAAATCGAACACAT 59.876 40.000 21.47 0.00 0.00 3.21
89 92 4.454161 CAGTACCATGGAAAATCGAACACA 59.546 41.667 21.47 0.00 0.00 3.72
102 105 1.210478 AGGCTAACTGCAGTACCATGG 59.790 52.381 26.46 11.19 45.15 3.66
115 118 1.693083 CCTGTACGCGCAAGGCTAAC 61.693 60.000 5.73 0.00 40.44 2.34
117 120 1.879737 TTCCTGTACGCGCAAGGCTA 61.880 55.000 5.73 0.00 40.44 3.93
167 170 5.672421 TCAGGTAGATAGATCATGCATGG 57.328 43.478 25.97 8.24 0.00 3.66
183 186 7.069455 TCCGAAAAGATAGACATTGATCAGGTA 59.931 37.037 0.00 0.00 0.00 3.08
184 187 6.051717 CCGAAAAGATAGACATTGATCAGGT 58.948 40.000 0.00 0.00 0.00 4.00
185 188 6.201806 GTCCGAAAAGATAGACATTGATCAGG 59.798 42.308 0.00 0.00 0.00 3.86
186 189 6.983307 AGTCCGAAAAGATAGACATTGATCAG 59.017 38.462 0.00 0.00 0.00 2.90
187 190 6.878317 AGTCCGAAAAGATAGACATTGATCA 58.122 36.000 0.00 0.00 0.00 2.92
188 191 7.168972 CAGAGTCCGAAAAGATAGACATTGATC 59.831 40.741 0.00 0.00 0.00 2.92
189 192 6.983307 CAGAGTCCGAAAAGATAGACATTGAT 59.017 38.462 0.00 0.00 0.00 2.57
190 193 6.333416 CAGAGTCCGAAAAGATAGACATTGA 58.667 40.000 0.00 0.00 0.00 2.57
191 194 5.521735 CCAGAGTCCGAAAAGATAGACATTG 59.478 44.000 0.00 0.00 0.00 2.82
192 195 5.422331 TCCAGAGTCCGAAAAGATAGACATT 59.578 40.000 0.00 0.00 0.00 2.71
193 196 4.956700 TCCAGAGTCCGAAAAGATAGACAT 59.043 41.667 0.00 0.00 0.00 3.06
194 197 4.158025 GTCCAGAGTCCGAAAAGATAGACA 59.842 45.833 0.00 0.00 0.00 3.41
195 198 4.674475 GTCCAGAGTCCGAAAAGATAGAC 58.326 47.826 0.00 0.00 0.00 2.59
196 199 3.377485 CGTCCAGAGTCCGAAAAGATAGA 59.623 47.826 0.00 0.00 0.00 1.98
197 200 3.489398 CCGTCCAGAGTCCGAAAAGATAG 60.489 52.174 0.00 0.00 0.00 2.08
198 201 2.426024 CCGTCCAGAGTCCGAAAAGATA 59.574 50.000 0.00 0.00 0.00 1.98
199 202 1.204941 CCGTCCAGAGTCCGAAAAGAT 59.795 52.381 0.00 0.00 0.00 2.40
200 203 0.601558 CCGTCCAGAGTCCGAAAAGA 59.398 55.000 0.00 0.00 0.00 2.52
201 204 0.601558 TCCGTCCAGAGTCCGAAAAG 59.398 55.000 0.00 0.00 0.00 2.27
202 205 0.316204 GTCCGTCCAGAGTCCGAAAA 59.684 55.000 0.00 0.00 0.00 2.29
203 206 1.859427 CGTCCGTCCAGAGTCCGAAA 61.859 60.000 0.00 0.00 0.00 3.46
204 207 2.330372 CGTCCGTCCAGAGTCCGAA 61.330 63.158 0.00 0.00 0.00 4.30
234 237 0.944386 ACGTGATTGCTTTTGTCGCT 59.056 45.000 0.00 0.00 0.00 4.93
281 284 1.672030 CCAGCTTGTCGCATGTCCA 60.672 57.895 0.00 0.00 42.61 4.02
306 309 4.780815 AGAAACGGATGGATAAAGCATGA 58.219 39.130 0.00 0.00 0.00 3.07
307 310 4.818546 AGAGAAACGGATGGATAAAGCATG 59.181 41.667 0.00 0.00 0.00 4.06
308 311 5.041191 AGAGAAACGGATGGATAAAGCAT 57.959 39.130 0.00 0.00 0.00 3.79
309 312 4.487714 AGAGAAACGGATGGATAAAGCA 57.512 40.909 0.00 0.00 0.00 3.91
310 313 5.050023 GCTTAGAGAAACGGATGGATAAAGC 60.050 44.000 0.00 0.00 0.00 3.51
363 366 0.025001 CAGCAAAAGATACGTCGCCG 59.975 55.000 0.00 0.00 40.83 6.46
393 396 0.397941 TCATCGATCAATGGAGGGGC 59.602 55.000 0.00 0.00 0.00 5.80
461 464 1.294659 CTTCTCTTGCCACGCTCCAC 61.295 60.000 0.00 0.00 0.00 4.02
500 503 0.032952 TGTCGGCTGTGTACCACTTC 59.967 55.000 0.00 0.00 35.11 3.01
510 513 1.285641 CCGCAAAATTGTCGGCTGT 59.714 52.632 13.28 0.00 39.55 4.40
519 522 0.806884 CATGCATCGGCCGCAAAATT 60.807 50.000 23.51 0.00 43.84 1.82
525 528 4.000557 CGTACATGCATCGGCCGC 62.001 66.667 23.51 7.33 40.13 6.53
529 532 0.249280 TAGTGCCGTACATGCATCGG 60.249 55.000 18.35 18.35 45.94 4.18
537 540 2.756207 TGTGATTAGCTAGTGCCGTACA 59.244 45.455 0.00 0.00 40.80 2.90
580 583 8.663167 TGATGGTAGGATCTCATGTTCATTATT 58.337 33.333 0.00 0.00 0.00 1.40
644 647 5.063438 CAGTGTGTTTTGTCGATCGGAATAT 59.937 40.000 16.41 0.00 0.00 1.28
645 648 4.387559 CAGTGTGTTTTGTCGATCGGAATA 59.612 41.667 16.41 1.28 0.00 1.75
646 649 3.186409 CAGTGTGTTTTGTCGATCGGAAT 59.814 43.478 16.41 0.00 0.00 3.01
647 650 2.542178 CAGTGTGTTTTGTCGATCGGAA 59.458 45.455 16.41 5.82 0.00 4.30
655 658 8.682128 TTTTTCTCAATACAGTGTGTTTTGTC 57.318 30.769 5.88 0.00 39.33 3.18
779 789 5.046950 ACAAAGTAGATTCTCTCCTGTCCAC 60.047 44.000 0.00 0.00 0.00 4.02
856 868 1.654105 GACGTAGCTACACATGTGCAC 59.346 52.381 25.68 10.75 0.00 4.57
877 889 0.181350 ATCCTGGAGACAAATCGGGC 59.819 55.000 1.52 0.00 42.06 6.13
947 968 2.821991 AAGCTAGTCGTTTGCACTCT 57.178 45.000 0.00 0.00 0.00 3.24
948 969 7.925703 TTATATAAGCTAGTCGTTTGCACTC 57.074 36.000 0.00 0.00 0.00 3.51
1115 1140 3.839432 CGCCCTCCTCTCCGTTCC 61.839 72.222 0.00 0.00 0.00 3.62
1163 1188 0.811915 CACGAGGAAGAGGTCGTCAT 59.188 55.000 0.00 0.00 46.17 3.06
1164 1189 0.536687 ACACGAGGAAGAGGTCGTCA 60.537 55.000 0.00 0.00 46.17 4.35
1349 1380 4.789075 CGCCGGTACTGGTGTCGG 62.789 72.222 23.84 13.13 44.70 4.79
1377 1408 1.002888 AGTTAGACGTCCGACCAGAGA 59.997 52.381 13.01 0.00 0.00 3.10
1443 1474 4.174762 GAGAAGTCGAAAGCGGATTACTT 58.825 43.478 0.00 0.00 34.73 2.24
1473 1504 6.864342 AGTAACGACTATGCTGACAAACTAT 58.136 36.000 0.00 0.00 32.65 2.12
1478 1509 5.892160 AGTAGTAACGACTATGCTGACAA 57.108 39.130 0.00 0.00 40.32 3.18
1568 1601 2.386661 AAGCATATTATCCGCTCCCG 57.613 50.000 0.00 0.00 34.11 5.14
1582 1615 4.586884 TCCTCGTCCGTAGATATAAGCAT 58.413 43.478 0.00 0.00 0.00 3.79
1592 1625 1.536284 GCTCCAAATCCTCGTCCGTAG 60.536 57.143 0.00 0.00 0.00 3.51
1595 1628 1.084370 GTGCTCCAAATCCTCGTCCG 61.084 60.000 0.00 0.00 0.00 4.79
1597 1630 1.646189 GAGTGCTCCAAATCCTCGTC 58.354 55.000 0.00 0.00 0.00 4.20
1598 1631 0.108615 CGAGTGCTCCAAATCCTCGT 60.109 55.000 0.00 0.00 39.96 4.18
1599 1632 0.807667 CCGAGTGCTCCAAATCCTCG 60.808 60.000 0.00 0.00 43.36 4.63
1600 1633 0.462759 CCCGAGTGCTCCAAATCCTC 60.463 60.000 0.00 0.00 0.00 3.71
1602 1635 1.026718 CACCCGAGTGCTCCAAATCC 61.027 60.000 0.00 0.00 37.14 3.01
1603 1636 2.471255 CACCCGAGTGCTCCAAATC 58.529 57.895 0.00 0.00 37.14 2.17
1604 1637 4.722193 CACCCGAGTGCTCCAAAT 57.278 55.556 0.00 0.00 37.14 2.32
1622 1655 0.031721 GTTCGTATAGGGGTGCGGAG 59.968 60.000 0.00 0.00 0.00 4.63
1623 1656 0.683828 TGTTCGTATAGGGGTGCGGA 60.684 55.000 0.00 0.00 0.00 5.54
1625 1658 2.234300 ATTGTTCGTATAGGGGTGCG 57.766 50.000 0.00 0.00 0.00 5.34
1627 1660 5.820423 TGAATGAATTGTTCGTATAGGGGTG 59.180 40.000 0.00 0.00 0.00 4.61
1629 1662 6.935741 TTGAATGAATTGTTCGTATAGGGG 57.064 37.500 0.00 0.00 0.00 4.79
1630 1663 9.801873 ATTTTTGAATGAATTGTTCGTATAGGG 57.198 29.630 0.00 0.00 0.00 3.53
1636 1669 9.284594 CGGTATATTTTTGAATGAATTGTTCGT 57.715 29.630 0.00 0.00 0.00 3.85
1637 1670 8.742188 CCGGTATATTTTTGAATGAATTGTTCG 58.258 33.333 0.00 0.00 0.00 3.95
1641 1835 9.593134 TTTCCCGGTATATTTTTGAATGAATTG 57.407 29.630 0.00 0.00 0.00 2.32
1645 1839 9.593134 CAAATTTCCCGGTATATTTTTGAATGA 57.407 29.630 0.00 0.00 0.00 2.57
1646 1840 8.825745 CCAAATTTCCCGGTATATTTTTGAATG 58.174 33.333 0.00 0.00 0.00 2.67
1650 1844 8.779354 TTTCCAAATTTCCCGGTATATTTTTG 57.221 30.769 0.00 3.00 0.00 2.44
1675 1869 7.507797 TGATATCCCAAAATCCCATGTTTTT 57.492 32.000 0.00 0.00 0.00 1.94
1676 1870 7.507797 TTGATATCCCAAAATCCCATGTTTT 57.492 32.000 0.00 0.00 0.00 2.43
1677 1871 7.337938 GTTTGATATCCCAAAATCCCATGTTT 58.662 34.615 0.00 0.00 37.72 2.83
1679 1873 5.068987 CGTTTGATATCCCAAAATCCCATGT 59.931 40.000 0.00 0.00 37.72 3.21
1680 1874 5.068987 ACGTTTGATATCCCAAAATCCCATG 59.931 40.000 0.00 0.00 37.72 3.66
1681 1875 5.068987 CACGTTTGATATCCCAAAATCCCAT 59.931 40.000 0.00 0.00 37.72 4.00
1682 1876 4.400884 CACGTTTGATATCCCAAAATCCCA 59.599 41.667 0.00 0.00 37.72 4.37
1683 1877 4.202111 CCACGTTTGATATCCCAAAATCCC 60.202 45.833 0.00 0.00 37.72 3.85
1684 1878 4.202111 CCCACGTTTGATATCCCAAAATCC 60.202 45.833 0.00 0.00 37.72 3.01
1685 1879 4.401202 ACCCACGTTTGATATCCCAAAATC 59.599 41.667 0.00 0.00 37.72 2.17
1686 1880 4.349365 ACCCACGTTTGATATCCCAAAAT 58.651 39.130 0.00 0.00 37.72 1.82
1687 1881 3.768878 ACCCACGTTTGATATCCCAAAA 58.231 40.909 0.00 0.00 37.72 2.44
1688 1882 3.443145 ACCCACGTTTGATATCCCAAA 57.557 42.857 0.00 0.00 34.03 3.28
1690 1884 2.356330 GGAACCCACGTTTGATATCCCA 60.356 50.000 0.00 0.00 30.30 4.37
1691 1885 2.294979 GGAACCCACGTTTGATATCCC 58.705 52.381 0.00 0.00 30.30 3.85
1706 1900 0.754587 ACGGGAGTAGATCGGGAACC 60.755 60.000 0.00 0.00 45.74 3.62
1708 1902 0.033796 ACACGGGAGTAGATCGGGAA 60.034 55.000 0.00 0.00 44.67 3.97
1709 1903 0.750546 CACACGGGAGTAGATCGGGA 60.751 60.000 0.00 0.00 44.67 5.14
1710 1904 0.750546 TCACACGGGAGTAGATCGGG 60.751 60.000 0.00 0.00 44.67 5.14
1711 1905 1.100510 TTCACACGGGAGTAGATCGG 58.899 55.000 0.00 0.00 44.67 4.18
1712 1906 2.933495 TTTCACACGGGAGTAGATCG 57.067 50.000 0.00 0.00 44.67 3.69
1713 1907 5.175859 TGAAATTTCACACGGGAGTAGATC 58.824 41.667 16.91 0.00 34.62 2.75
1716 1910 4.935205 TCATGAAATTTCACACGGGAGTAG 59.065 41.667 22.71 4.00 40.23 2.57
1717 1911 4.900684 TCATGAAATTTCACACGGGAGTA 58.099 39.130 22.71 0.00 40.23 2.59
1718 1912 3.750371 TCATGAAATTTCACACGGGAGT 58.250 40.909 22.71 1.94 41.15 3.85
1719 1913 4.764679 TTCATGAAATTTCACACGGGAG 57.235 40.909 22.71 7.52 40.49 4.30
1720 1914 5.521906 TTTTCATGAAATTTCACACGGGA 57.478 34.783 22.71 12.29 40.49 5.14
1740 1934 6.152154 CCCTGAATACGTTTCCTGGTATTTTT 59.848 38.462 0.00 0.00 38.93 1.94
1747 2133 1.339631 TGCCCTGAATACGTTTCCTGG 60.340 52.381 0.00 2.64 0.00 4.45
1748 2134 2.107950 TGCCCTGAATACGTTTCCTG 57.892 50.000 0.00 0.00 0.00 3.86
1799 2185 6.754675 CGAACAAAAATCTACCCAAACAGTTT 59.245 34.615 0.00 0.00 0.00 2.66
1800 2186 6.270064 CGAACAAAAATCTACCCAAACAGTT 58.730 36.000 0.00 0.00 0.00 3.16
1803 2189 4.888239 TCCGAACAAAAATCTACCCAAACA 59.112 37.500 0.00 0.00 0.00 2.83
1804 2190 5.217393 GTCCGAACAAAAATCTACCCAAAC 58.783 41.667 0.00 0.00 0.00 2.93
1805 2191 4.888239 TGTCCGAACAAAAATCTACCCAAA 59.112 37.500 0.00 0.00 30.70 3.28
1807 2193 4.069304 CTGTCCGAACAAAAATCTACCCA 58.931 43.478 0.00 0.00 34.24 4.51
1809 2195 6.980051 ATACTGTCCGAACAAAAATCTACC 57.020 37.500 0.00 0.00 34.24 3.18
1810 2196 7.961283 GGAAATACTGTCCGAACAAAAATCTAC 59.039 37.037 0.00 0.00 34.24 2.59
1811 2197 7.881232 AGGAAATACTGTCCGAACAAAAATCTA 59.119 33.333 0.00 0.00 40.36 1.98
1813 2199 6.909909 AGGAAATACTGTCCGAACAAAAATC 58.090 36.000 0.00 0.00 40.36 2.17
1814 2200 6.894339 AGGAAATACTGTCCGAACAAAAAT 57.106 33.333 0.00 0.00 40.36 1.82
1817 2203 4.758165 GGAAGGAAATACTGTCCGAACAAA 59.242 41.667 0.00 0.00 40.36 2.83
1818 2204 4.320870 GGAAGGAAATACTGTCCGAACAA 58.679 43.478 0.00 0.00 40.36 2.83
1819 2205 3.307199 GGGAAGGAAATACTGTCCGAACA 60.307 47.826 0.00 0.00 40.36 3.18
1820 2206 3.268330 GGGAAGGAAATACTGTCCGAAC 58.732 50.000 0.00 0.00 40.36 3.95
1821 2207 2.237893 GGGGAAGGAAATACTGTCCGAA 59.762 50.000 0.00 0.00 40.36 4.30
1824 2210 3.202151 TCATGGGGAAGGAAATACTGTCC 59.798 47.826 0.00 0.00 35.17 4.02
1825 2211 4.503714 TCATGGGGAAGGAAATACTGTC 57.496 45.455 0.00 0.00 0.00 3.51
1828 2214 7.226059 ACTTATTCATGGGGAAGGAAATACT 57.774 36.000 0.00 0.00 39.30 2.12
1829 2215 7.898014 AACTTATTCATGGGGAAGGAAATAC 57.102 36.000 0.00 0.00 39.30 1.89
1831 2217 7.813087 AAAACTTATTCATGGGGAAGGAAAT 57.187 32.000 0.00 0.00 39.30 2.17
1832 2218 7.625498 AAAAACTTATTCATGGGGAAGGAAA 57.375 32.000 0.00 0.00 39.30 3.13
1863 2249 5.591877 CCCCCATGTGAAATTTTGTGAAAAA 59.408 36.000 0.00 0.00 33.47 1.94
1868 2849 3.767902 ACCCCCATGTGAAATTTTGTG 57.232 42.857 0.00 0.00 0.00 3.33
1878 2859 1.221635 TCCCAATCTACCCCCATGTG 58.778 55.000 0.00 0.00 0.00 3.21
1880 2861 2.666317 GTTTCCCAATCTACCCCCATG 58.334 52.381 0.00 0.00 0.00 3.66
1882 2863 1.004436 GGTTTCCCAATCTACCCCCA 58.996 55.000 0.00 0.00 0.00 4.96
1883 2864 1.004436 TGGTTTCCCAATCTACCCCC 58.996 55.000 0.00 0.00 37.98 5.40
1884 2865 1.063942 CCTGGTTTCCCAATCTACCCC 60.064 57.143 0.00 0.00 41.27 4.95
1885 2866 1.639108 ACCTGGTTTCCCAATCTACCC 59.361 52.381 0.00 0.00 41.27 3.69
1886 2867 3.451402 AACCTGGTTTCCCAATCTACC 57.549 47.619 6.18 0.00 41.27 3.18
1891 2872 5.425217 GGAATATCAAACCTGGTTTCCCAAT 59.575 40.000 21.49 14.27 41.27 3.16
1892 2873 4.775253 GGAATATCAAACCTGGTTTCCCAA 59.225 41.667 21.49 8.45 41.27 4.12
1893 2874 4.349365 GGAATATCAAACCTGGTTTCCCA 58.651 43.478 21.49 9.38 38.87 4.37
1894 2875 3.704566 GGGAATATCAAACCTGGTTTCCC 59.295 47.826 22.56 22.56 42.79 3.97
1895 2876 4.349365 TGGGAATATCAAACCTGGTTTCC 58.651 43.478 21.49 17.61 33.10 3.13
1896 2877 5.993748 TTGGGAATATCAAACCTGGTTTC 57.006 39.130 21.49 9.72 33.10 2.78
1897 2878 6.950860 ATTTGGGAATATCAAACCTGGTTT 57.049 33.333 18.84 18.84 37.00 3.27
1898 2879 6.950860 AATTTGGGAATATCAAACCTGGTT 57.049 33.333 6.18 6.18 37.00 3.67
1899 2880 6.500049 TGAAATTTGGGAATATCAAACCTGGT 59.500 34.615 0.00 0.00 37.00 4.00
1900 2881 6.945218 TGAAATTTGGGAATATCAAACCTGG 58.055 36.000 0.00 0.00 37.00 4.45
1902 2883 7.797121 ACTGAAATTTGGGAATATCAAACCT 57.203 32.000 0.00 0.00 37.00 3.50
1903 2884 8.846943 AAACTGAAATTTGGGAATATCAAACC 57.153 30.769 0.00 0.00 37.00 3.27
1945 3148 8.433599 TCCACATCCCTATACGAAAAATAATCA 58.566 33.333 0.00 0.00 0.00 2.57
1951 3154 4.080807 TGCTCCACATCCCTATACGAAAAA 60.081 41.667 0.00 0.00 0.00 1.94
1965 3168 0.987081 AGCTCCTGGATGCTCCACAT 60.987 55.000 12.87 0.00 42.67 3.21
1966 3169 1.614525 AGCTCCTGGATGCTCCACA 60.615 57.895 12.87 0.00 42.67 4.17
1967 3170 3.318191 AGCTCCTGGATGCTCCAC 58.682 61.111 12.87 0.00 42.67 4.02
1979 3182 3.636153 AGGAAAATACACAGGAGCTCC 57.364 47.619 26.22 26.22 0.00 4.70
1980 3183 7.902087 AGATATAGGAAAATACACAGGAGCTC 58.098 38.462 4.71 4.71 0.00 4.09
1981 3184 7.863901 AGATATAGGAAAATACACAGGAGCT 57.136 36.000 0.00 0.00 0.00 4.09
1982 3185 8.808092 AGTAGATATAGGAAAATACACAGGAGC 58.192 37.037 0.00 0.00 0.00 4.70
1984 3187 9.310449 GGAGTAGATATAGGAAAATACACAGGA 57.690 37.037 0.00 0.00 0.00 3.86
1985 3188 8.532819 GGGAGTAGATATAGGAAAATACACAGG 58.467 40.741 0.00 0.00 0.00 4.00
1986 3189 9.315363 AGGGAGTAGATATAGGAAAATACACAG 57.685 37.037 0.00 0.00 0.00 3.66
1987 3190 9.670442 AAGGGAGTAGATATAGGAAAATACACA 57.330 33.333 0.00 0.00 0.00 3.72
1990 3193 9.438228 GCAAAGGGAGTAGATATAGGAAAATAC 57.562 37.037 0.00 0.00 0.00 1.89
1991 3194 9.393786 AGCAAAGGGAGTAGATATAGGAAAATA 57.606 33.333 0.00 0.00 0.00 1.40
1992 3195 8.281529 AGCAAAGGGAGTAGATATAGGAAAAT 57.718 34.615 0.00 0.00 0.00 1.82
1993 3196 7.691993 AGCAAAGGGAGTAGATATAGGAAAA 57.308 36.000 0.00 0.00 0.00 2.29
1994 3197 8.011290 AGTAGCAAAGGGAGTAGATATAGGAAA 58.989 37.037 0.00 0.00 0.00 3.13
1995 3198 7.536625 AGTAGCAAAGGGAGTAGATATAGGAA 58.463 38.462 0.00 0.00 0.00 3.36
1996 3199 7.104974 AGTAGCAAAGGGAGTAGATATAGGA 57.895 40.000 0.00 0.00 0.00 2.94
1997 3200 8.880991 TTAGTAGCAAAGGGAGTAGATATAGG 57.119 38.462 0.00 0.00 0.00 2.57
2006 3209 9.160412 AGACATATATTTAGTAGCAAAGGGAGT 57.840 33.333 0.00 0.00 0.00 3.85
2052 3255 2.767394 CCATGATGGCATTTCCCTCAAA 59.233 45.455 0.00 0.00 41.76 2.69
2065 3268 5.703978 TGAAATATAAACCGCCATGATGG 57.296 39.130 7.21 7.21 41.55 3.51
2067 3270 6.489700 TCACATGAAATATAAACCGCCATGAT 59.510 34.615 0.00 0.00 35.32 2.45
2068 3271 5.825151 TCACATGAAATATAAACCGCCATGA 59.175 36.000 0.00 0.00 35.32 3.07
2070 3273 6.061441 TCTCACATGAAATATAAACCGCCAT 58.939 36.000 0.00 0.00 0.00 4.40
2072 3275 6.371809 TTCTCACATGAAATATAAACCGCC 57.628 37.500 0.00 0.00 0.00 6.13
2073 3276 9.944663 TTTATTCTCACATGAAATATAAACCGC 57.055 29.630 0.00 0.00 0.00 5.68
2084 3287 9.599866 AACGATGTATCTTTATTCTCACATGAA 57.400 29.630 0.00 0.00 0.00 2.57
2085 3288 9.599866 AAACGATGTATCTTTATTCTCACATGA 57.400 29.630 0.00 0.00 0.00 3.07
2086 3289 9.642312 CAAACGATGTATCTTTATTCTCACATG 57.358 33.333 0.00 0.00 0.00 3.21
2087 3290 9.383519 ACAAACGATGTATCTTTATTCTCACAT 57.616 29.630 0.00 0.00 41.63 3.21
2097 3300 9.620660 GGATGTTTTAACAAACGATGTATCTTT 57.379 29.630 0.00 0.00 44.76 2.52
2099 3302 8.234546 GTGGATGTTTTAACAAACGATGTATCT 58.765 33.333 0.00 0.00 44.76 1.98
2100 3303 8.234546 AGTGGATGTTTTAACAAACGATGTATC 58.765 33.333 0.00 0.00 44.76 2.24
2102 3305 7.499321 AGTGGATGTTTTAACAAACGATGTA 57.501 32.000 0.00 0.00 44.76 2.29
2103 3306 6.385649 AGTGGATGTTTTAACAAACGATGT 57.614 33.333 0.00 0.00 44.76 3.06
2104 3307 8.286800 TCTTAGTGGATGTTTTAACAAACGATG 58.713 33.333 0.00 0.00 44.76 3.84
2106 3309 7.789273 TCTTAGTGGATGTTTTAACAAACGA 57.211 32.000 0.00 0.00 44.76 3.85
2107 3310 8.739461 GTTTCTTAGTGGATGTTTTAACAAACG 58.261 33.333 0.00 0.00 44.76 3.60
2108 3311 9.027129 GGTTTCTTAGTGGATGTTTTAACAAAC 57.973 33.333 0.00 0.00 43.03 2.93
2109 3312 8.198778 GGGTTTCTTAGTGGATGTTTTAACAAA 58.801 33.333 0.00 0.00 43.03 2.83
2110 3313 7.468906 CGGGTTTCTTAGTGGATGTTTTAACAA 60.469 37.037 0.00 0.00 43.03 2.83
2111 3314 6.016943 CGGGTTTCTTAGTGGATGTTTTAACA 60.017 38.462 0.00 0.00 44.06 2.41
2112 3315 6.376177 CGGGTTTCTTAGTGGATGTTTTAAC 58.624 40.000 0.00 0.00 0.00 2.01
2113 3316 5.474189 CCGGGTTTCTTAGTGGATGTTTTAA 59.526 40.000 0.00 0.00 0.00 1.52
2114 3317 5.005094 CCGGGTTTCTTAGTGGATGTTTTA 58.995 41.667 0.00 0.00 0.00 1.52
2115 3318 3.824443 CCGGGTTTCTTAGTGGATGTTTT 59.176 43.478 0.00 0.00 0.00 2.43
2116 3319 3.418047 CCGGGTTTCTTAGTGGATGTTT 58.582 45.455 0.00 0.00 0.00 2.83
2117 3320 2.290705 CCCGGGTTTCTTAGTGGATGTT 60.291 50.000 14.18 0.00 0.00 2.71
2118 3321 1.280998 CCCGGGTTTCTTAGTGGATGT 59.719 52.381 14.18 0.00 0.00 3.06
2119 3322 1.408266 CCCCGGGTTTCTTAGTGGATG 60.408 57.143 21.85 0.00 0.00 3.51
2120 3323 0.916809 CCCCGGGTTTCTTAGTGGAT 59.083 55.000 21.85 0.00 0.00 3.41
2121 3324 1.202769 CCCCCGGGTTTCTTAGTGGA 61.203 60.000 21.85 0.00 0.00 4.02
2122 3325 1.301954 CCCCCGGGTTTCTTAGTGG 59.698 63.158 21.85 5.92 0.00 4.00
2123 3326 1.378119 GCCCCCGGGTTTCTTAGTG 60.378 63.158 21.85 0.00 37.65 2.74
2124 3327 1.540617 AGCCCCCGGGTTTCTTAGT 60.541 57.895 21.85 0.00 37.65 2.24
2125 3328 1.223763 GAGCCCCCGGGTTTCTTAG 59.776 63.158 21.85 0.91 37.65 2.18
2126 3329 2.303282 GGAGCCCCCGGGTTTCTTA 61.303 63.158 21.85 0.00 37.65 2.10
2127 3330 3.658422 GGAGCCCCCGGGTTTCTT 61.658 66.667 21.85 0.00 37.65 2.52
2136 3339 1.000145 TTTGGAAATCGGAGCCCCC 60.000 57.895 0.00 0.00 0.00 5.40
2137 3340 0.610785 TGTTTGGAAATCGGAGCCCC 60.611 55.000 0.00 0.00 0.00 5.80
2138 3341 1.253100 TTGTTTGGAAATCGGAGCCC 58.747 50.000 0.00 0.00 0.00 5.19
2139 3342 3.253230 CAATTGTTTGGAAATCGGAGCC 58.747 45.455 0.00 0.00 0.00 4.70
2140 3343 3.913089 ACAATTGTTTGGAAATCGGAGC 58.087 40.909 4.92 0.00 37.15 4.70
2141 3344 4.616802 CGAACAATTGTTTGGAAATCGGAG 59.383 41.667 25.23 4.77 38.56 4.63
2142 3345 4.276183 TCGAACAATTGTTTGGAAATCGGA 59.724 37.500 29.80 11.93 39.36 4.55
2143 3346 4.541779 TCGAACAATTGTTTGGAAATCGG 58.458 39.130 29.80 11.92 39.36 4.18
2144 3347 5.339611 GTCTCGAACAATTGTTTGGAAATCG 59.660 40.000 29.80 23.24 39.36 3.34
2145 3348 6.142320 GTGTCTCGAACAATTGTTTGGAAATC 59.858 38.462 29.80 18.83 40.31 2.17
2146 3349 5.977129 GTGTCTCGAACAATTGTTTGGAAAT 59.023 36.000 29.80 7.48 40.31 2.17
2147 3350 5.336744 GTGTCTCGAACAATTGTTTGGAAA 58.663 37.500 29.80 20.55 40.31 3.13
2148 3351 4.201970 GGTGTCTCGAACAATTGTTTGGAA 60.202 41.667 29.80 19.09 40.31 3.53
2149 3352 3.314080 GGTGTCTCGAACAATTGTTTGGA 59.686 43.478 29.80 24.06 40.31 3.53
2150 3353 3.315191 AGGTGTCTCGAACAATTGTTTGG 59.685 43.478 29.80 22.23 40.31 3.28
2151 3354 4.527564 GAGGTGTCTCGAACAATTGTTTG 58.472 43.478 26.47 26.47 40.31 2.93
2152 3355 3.564225 GGAGGTGTCTCGAACAATTGTTT 59.436 43.478 24.02 8.91 40.31 2.83
2153 3356 3.139077 GGAGGTGTCTCGAACAATTGTT 58.861 45.455 23.49 23.49 40.31 2.83
2154 3357 2.767505 GGAGGTGTCTCGAACAATTGT 58.232 47.619 4.92 4.92 40.31 2.71
2155 3358 1.726791 CGGAGGTGTCTCGAACAATTG 59.273 52.381 3.24 3.24 40.31 2.32
2156 3359 1.616865 TCGGAGGTGTCTCGAACAATT 59.383 47.619 2.65 0.00 40.31 2.32
2157 3360 1.202582 CTCGGAGGTGTCTCGAACAAT 59.797 52.381 0.00 0.00 40.31 2.71
2158 3361 0.596577 CTCGGAGGTGTCTCGAACAA 59.403 55.000 0.00 0.00 40.31 2.83
2159 3362 0.536687 ACTCGGAGGTGTCTCGAACA 60.537 55.000 10.23 0.00 40.85 3.18
2160 3363 0.597072 AACTCGGAGGTGTCTCGAAC 59.403 55.000 10.23 0.00 40.85 3.95
2161 3364 0.879765 GAACTCGGAGGTGTCTCGAA 59.120 55.000 10.23 0.00 40.85 3.71
2162 3365 0.036448 AGAACTCGGAGGTGTCTCGA 59.964 55.000 10.23 0.00 40.85 4.04
2163 3366 0.882474 AAGAACTCGGAGGTGTCTCG 59.118 55.000 10.23 0.00 40.85 4.04
2164 3367 2.159352 GCTAAGAACTCGGAGGTGTCTC 60.159 54.545 10.23 0.00 39.25 3.36
2165 3368 1.819903 GCTAAGAACTCGGAGGTGTCT 59.180 52.381 10.23 6.18 0.00 3.41
2166 3369 1.819903 AGCTAAGAACTCGGAGGTGTC 59.180 52.381 10.23 3.93 0.00 3.67
2167 3370 1.926108 AGCTAAGAACTCGGAGGTGT 58.074 50.000 10.23 0.00 0.00 4.16
2168 3371 2.223618 GCTAGCTAAGAACTCGGAGGTG 60.224 54.545 7.70 0.00 0.00 4.00
2169 3372 2.025898 GCTAGCTAAGAACTCGGAGGT 58.974 52.381 7.70 1.51 0.00 3.85
2170 3373 2.025155 TGCTAGCTAAGAACTCGGAGG 58.975 52.381 17.23 0.00 0.00 4.30
2171 3374 2.423892 TGTGCTAGCTAAGAACTCGGAG 59.576 50.000 17.23 2.83 34.39 4.63
2172 3375 2.443416 TGTGCTAGCTAAGAACTCGGA 58.557 47.619 17.23 0.00 34.39 4.55
2173 3376 2.941453 TGTGCTAGCTAAGAACTCGG 57.059 50.000 17.23 0.00 34.39 4.63
2174 3377 3.376540 GGATGTGCTAGCTAAGAACTCG 58.623 50.000 17.23 0.00 34.39 4.18
2175 3378 3.376540 CGGATGTGCTAGCTAAGAACTC 58.623 50.000 17.23 4.98 34.39 3.01
2176 3379 2.482142 GCGGATGTGCTAGCTAAGAACT 60.482 50.000 17.23 0.00 34.39 3.01
2177 3380 1.861575 GCGGATGTGCTAGCTAAGAAC 59.138 52.381 17.23 5.70 33.78 3.01
2178 3381 1.202533 GGCGGATGTGCTAGCTAAGAA 60.203 52.381 17.23 0.00 34.52 2.52
2179 3382 0.389391 GGCGGATGTGCTAGCTAAGA 59.611 55.000 17.23 0.00 34.52 2.10
2180 3383 0.941463 CGGCGGATGTGCTAGCTAAG 60.941 60.000 17.23 2.81 34.52 2.18
2181 3384 1.067416 CGGCGGATGTGCTAGCTAA 59.933 57.895 17.23 4.18 34.52 3.09
2182 3385 2.728180 CGGCGGATGTGCTAGCTA 59.272 61.111 17.23 5.45 34.52 3.32
2183 3386 4.899239 GCGGCGGATGTGCTAGCT 62.899 66.667 17.23 0.00 36.24 3.32
2185 3388 2.434658 TATGGCGGCGGATGTGCTAG 62.435 60.000 9.78 0.00 34.52 3.42
2186 3389 1.826340 ATATGGCGGCGGATGTGCTA 61.826 55.000 9.78 0.00 34.52 3.49
2187 3390 2.680974 AATATGGCGGCGGATGTGCT 62.681 55.000 9.78 0.00 34.52 4.40
2188 3391 2.260869 AATATGGCGGCGGATGTGC 61.261 57.895 9.78 0.00 0.00 4.57
2189 3392 1.575922 CAATATGGCGGCGGATGTG 59.424 57.895 9.78 0.00 0.00 3.21
2190 3393 1.600636 CCAATATGGCGGCGGATGT 60.601 57.895 9.78 0.00 0.00 3.06
2191 3394 3.266964 CCAATATGGCGGCGGATG 58.733 61.111 9.78 0.47 0.00 3.51
2200 3403 0.250901 CCCTCGGGAAGCCAATATGG 60.251 60.000 0.00 0.00 37.87 2.74
2201 3404 0.890996 GCCCTCGGGAAGCCAATATG 60.891 60.000 6.08 0.00 37.50 1.78
2202 3405 1.352622 TGCCCTCGGGAAGCCAATAT 61.353 55.000 6.08 0.00 37.50 1.28
2203 3406 1.567208 TTGCCCTCGGGAAGCCAATA 61.567 55.000 6.08 0.00 37.50 1.90
2204 3407 2.228841 ATTGCCCTCGGGAAGCCAAT 62.229 55.000 6.08 3.12 36.27 3.16
2205 3408 2.917897 ATTGCCCTCGGGAAGCCAA 61.918 57.895 6.08 0.63 36.27 4.52
2206 3409 3.338250 ATTGCCCTCGGGAAGCCA 61.338 61.111 6.08 0.00 36.27 4.75
2207 3410 2.830370 CATTGCCCTCGGGAAGCC 60.830 66.667 6.08 0.00 36.27 4.35
2208 3411 2.830370 CCATTGCCCTCGGGAAGC 60.830 66.667 6.08 0.00 36.27 3.86
2209 3412 1.983119 TAGCCATTGCCCTCGGGAAG 61.983 60.000 6.08 0.00 36.27 3.46
2210 3413 1.567208 TTAGCCATTGCCCTCGGGAA 61.567 55.000 6.08 0.00 37.45 3.97
2211 3414 1.567208 TTTAGCCATTGCCCTCGGGA 61.567 55.000 6.08 0.00 38.69 5.14
2212 3415 0.682855 TTTTAGCCATTGCCCTCGGG 60.683 55.000 0.00 0.00 38.69 5.14
2213 3416 1.135112 GTTTTTAGCCATTGCCCTCGG 60.135 52.381 0.00 0.00 38.69 4.63
2214 3417 1.818674 AGTTTTTAGCCATTGCCCTCG 59.181 47.619 0.00 0.00 38.69 4.63
2215 3418 6.062095 TCTATAGTTTTTAGCCATTGCCCTC 58.938 40.000 0.00 0.00 38.69 4.30
2216 3419 6.013554 TCTATAGTTTTTAGCCATTGCCCT 57.986 37.500 0.00 0.00 38.69 5.19
2217 3420 6.062095 TCTCTATAGTTTTTAGCCATTGCCC 58.938 40.000 0.00 0.00 38.69 5.36
2218 3421 7.751768 ATCTCTATAGTTTTTAGCCATTGCC 57.248 36.000 0.00 0.00 38.69 4.52
2243 3446 9.578439 GAATGCACTTTCTTATCTAGCAATTTT 57.422 29.630 0.00 0.00 33.91 1.82
2244 3447 8.964772 AGAATGCACTTTCTTATCTAGCAATTT 58.035 29.630 0.00 0.00 31.94 1.82
2245 3448 8.517062 AGAATGCACTTTCTTATCTAGCAATT 57.483 30.769 0.00 0.00 31.94 2.32
2246 3449 8.517062 AAGAATGCACTTTCTTATCTAGCAAT 57.483 30.769 12.55 0.00 42.63 3.56
2247 3450 7.607607 TGAAGAATGCACTTTCTTATCTAGCAA 59.392 33.333 13.86 0.00 44.04 3.91
2248 3451 7.105588 TGAAGAATGCACTTTCTTATCTAGCA 58.894 34.615 13.86 5.67 44.04 3.49
2249 3452 7.545362 TGAAGAATGCACTTTCTTATCTAGC 57.455 36.000 13.86 3.51 44.04 3.42
2250 3453 9.107177 ACATGAAGAATGCACTTTCTTATCTAG 57.893 33.333 13.86 6.86 44.04 2.43
2252 3455 7.934855 ACATGAAGAATGCACTTTCTTATCT 57.065 32.000 13.86 1.73 44.04 1.98
2255 3458 7.970061 GCAATACATGAAGAATGCACTTTCTTA 59.030 33.333 13.86 5.31 44.04 2.10
2256 3459 6.810182 GCAATACATGAAGAATGCACTTTCTT 59.190 34.615 13.79 13.79 46.08 2.52
2257 3460 6.327934 GCAATACATGAAGAATGCACTTTCT 58.672 36.000 0.00 0.00 40.22 2.52
2258 3461 5.517770 GGCAATACATGAAGAATGCACTTTC 59.482 40.000 0.00 0.00 40.22 2.62
2259 3462 5.413499 GGCAATACATGAAGAATGCACTTT 58.587 37.500 0.00 0.00 40.22 2.66
2260 3463 4.439153 CGGCAATACATGAAGAATGCACTT 60.439 41.667 0.00 0.00 40.22 3.16
2261 3464 3.065786 CGGCAATACATGAAGAATGCACT 59.934 43.478 0.00 0.00 40.22 4.40
2262 3465 3.365832 CGGCAATACATGAAGAATGCAC 58.634 45.455 0.00 0.00 40.22 4.57
2263 3466 2.223548 GCGGCAATACATGAAGAATGCA 60.224 45.455 0.00 0.00 40.22 3.96
2264 3467 2.033801 AGCGGCAATACATGAAGAATGC 59.966 45.455 0.00 2.48 40.22 3.56
2265 3468 3.624900 CAGCGGCAATACATGAAGAATG 58.375 45.455 0.00 0.00 42.48 2.67
2266 3469 2.033801 GCAGCGGCAATACATGAAGAAT 59.966 45.455 3.18 0.00 40.72 2.40
2267 3470 1.401552 GCAGCGGCAATACATGAAGAA 59.598 47.619 3.18 0.00 40.72 2.52
2268 3471 1.016627 GCAGCGGCAATACATGAAGA 58.983 50.000 3.18 0.00 40.72 2.87
2269 3472 1.019673 AGCAGCGGCAATACATGAAG 58.980 50.000 12.44 0.00 44.61 3.02
2270 3473 0.734309 CAGCAGCGGCAATACATGAA 59.266 50.000 12.44 0.00 44.61 2.57
2271 3474 1.096967 CCAGCAGCGGCAATACATGA 61.097 55.000 12.44 0.00 44.61 3.07
2272 3475 1.357690 CCAGCAGCGGCAATACATG 59.642 57.895 12.44 0.00 44.61 3.21
2273 3476 1.077501 ACCAGCAGCGGCAATACAT 60.078 52.632 12.44 0.00 44.61 2.29
2274 3477 1.745115 GACCAGCAGCGGCAATACA 60.745 57.895 12.44 0.00 44.61 2.29
2275 3478 2.472909 GGACCAGCAGCGGCAATAC 61.473 63.158 12.44 0.00 44.61 1.89
2276 3479 1.334384 TAGGACCAGCAGCGGCAATA 61.334 55.000 12.44 0.00 44.61 1.90
2277 3480 2.196997 TTAGGACCAGCAGCGGCAAT 62.197 55.000 12.44 0.00 44.61 3.56
2278 3481 2.196997 ATTAGGACCAGCAGCGGCAA 62.197 55.000 12.44 0.00 44.61 4.52
2279 3482 2.669133 ATTAGGACCAGCAGCGGCA 61.669 57.895 12.44 0.00 44.61 5.69
2280 3483 2.182842 CATTAGGACCAGCAGCGGC 61.183 63.158 0.00 0.00 41.61 6.53
2281 3484 0.107703 TTCATTAGGACCAGCAGCGG 60.108 55.000 0.00 2.15 0.00 5.52
2282 3485 1.959042 ATTCATTAGGACCAGCAGCG 58.041 50.000 0.00 0.00 0.00 5.18
2283 3486 2.620585 GGAATTCATTAGGACCAGCAGC 59.379 50.000 7.93 0.00 0.00 5.25
2284 3487 3.217626 GGGAATTCATTAGGACCAGCAG 58.782 50.000 7.93 0.00 0.00 4.24
2285 3488 2.421388 CGGGAATTCATTAGGACCAGCA 60.421 50.000 7.93 0.00 0.00 4.41
2286 3489 2.222027 CGGGAATTCATTAGGACCAGC 58.778 52.381 7.93 0.00 0.00 4.85
2287 3490 2.222027 GCGGGAATTCATTAGGACCAG 58.778 52.381 7.93 0.00 0.00 4.00
2288 3491 1.133915 GGCGGGAATTCATTAGGACCA 60.134 52.381 7.93 0.00 0.00 4.02
2289 3492 1.133915 TGGCGGGAATTCATTAGGACC 60.134 52.381 7.93 0.00 0.00 4.46
2290 3493 1.947456 GTGGCGGGAATTCATTAGGAC 59.053 52.381 7.93 0.00 0.00 3.85
2291 3494 1.843851 AGTGGCGGGAATTCATTAGGA 59.156 47.619 7.93 0.00 0.00 2.94
2292 3495 2.222027 GAGTGGCGGGAATTCATTAGG 58.778 52.381 7.93 0.00 0.00 2.69
2293 3496 2.917933 TGAGTGGCGGGAATTCATTAG 58.082 47.619 7.93 0.00 0.00 1.73
2294 3497 3.118075 TGATGAGTGGCGGGAATTCATTA 60.118 43.478 7.93 0.00 0.00 1.90
2295 3498 2.301346 GATGAGTGGCGGGAATTCATT 58.699 47.619 7.93 0.00 0.00 2.57
2296 3499 1.212688 TGATGAGTGGCGGGAATTCAT 59.787 47.619 7.93 0.00 0.00 2.57
2297 3500 0.617935 TGATGAGTGGCGGGAATTCA 59.382 50.000 7.93 0.00 0.00 2.57
2298 3501 1.605710 CATGATGAGTGGCGGGAATTC 59.394 52.381 0.00 0.00 0.00 2.17
2299 3502 1.212688 TCATGATGAGTGGCGGGAATT 59.787 47.619 0.00 0.00 0.00 2.17
2300 3503 0.839277 TCATGATGAGTGGCGGGAAT 59.161 50.000 0.00 0.00 0.00 3.01
2301 3504 0.839277 ATCATGATGAGTGGCGGGAA 59.161 50.000 7.59 0.00 0.00 3.97
2302 3505 0.394192 GATCATGATGAGTGGCGGGA 59.606 55.000 14.30 0.00 0.00 5.14
2303 3506 0.395686 AGATCATGATGAGTGGCGGG 59.604 55.000 14.30 0.00 0.00 6.13
2304 3507 1.793258 GAGATCATGATGAGTGGCGG 58.207 55.000 14.30 0.00 0.00 6.13
2305 3508 1.000938 TCGAGATCATGATGAGTGGCG 60.001 52.381 14.30 7.41 0.00 5.69
2306 3509 2.808523 TCGAGATCATGATGAGTGGC 57.191 50.000 14.30 0.00 0.00 5.01
2307 3510 5.047448 AGGTAATCGAGATCATGATGAGTGG 60.047 44.000 14.30 0.00 0.00 4.00
2308 3511 6.023357 AGGTAATCGAGATCATGATGAGTG 57.977 41.667 14.30 0.18 0.00 3.51
2309 3512 5.184864 GGAGGTAATCGAGATCATGATGAGT 59.815 44.000 14.30 6.32 0.00 3.41
2310 3513 5.184671 TGGAGGTAATCGAGATCATGATGAG 59.815 44.000 14.30 4.16 0.00 2.90
2311 3514 5.079643 TGGAGGTAATCGAGATCATGATGA 58.920 41.667 14.30 4.70 0.00 2.92
2312 3515 5.184671 TCTGGAGGTAATCGAGATCATGATG 59.815 44.000 14.30 0.00 37.80 3.07
2313 3516 5.184864 GTCTGGAGGTAATCGAGATCATGAT 59.815 44.000 8.25 8.25 43.64 2.45
2314 3517 4.520874 GTCTGGAGGTAATCGAGATCATGA 59.479 45.833 0.00 0.00 43.64 3.07
2315 3518 4.279420 TGTCTGGAGGTAATCGAGATCATG 59.721 45.833 0.00 0.00 43.64 3.07
2316 3519 4.474394 TGTCTGGAGGTAATCGAGATCAT 58.526 43.478 0.00 0.00 43.64 2.45
2317 3520 3.885901 CTGTCTGGAGGTAATCGAGATCA 59.114 47.826 0.00 0.00 43.64 2.92
2318 3521 3.886505 ACTGTCTGGAGGTAATCGAGATC 59.113 47.826 0.00 0.00 43.64 2.75
2319 3522 3.886505 GACTGTCTGGAGGTAATCGAGAT 59.113 47.826 0.00 0.00 43.64 2.75
2320 3523 3.280295 GACTGTCTGGAGGTAATCGAGA 58.720 50.000 0.00 0.00 40.14 4.04
2321 3524 2.359531 GGACTGTCTGGAGGTAATCGAG 59.640 54.545 7.85 0.00 35.20 4.04
2322 3525 2.376109 GGACTGTCTGGAGGTAATCGA 58.624 52.381 7.85 0.00 0.00 3.59
2323 3526 1.065701 CGGACTGTCTGGAGGTAATCG 59.934 57.143 8.80 0.00 0.00 3.34
2324 3527 1.202428 GCGGACTGTCTGGAGGTAATC 60.202 57.143 17.76 0.00 0.00 1.75
2325 3528 0.824759 GCGGACTGTCTGGAGGTAAT 59.175 55.000 17.76 0.00 0.00 1.89
2326 3529 0.251653 AGCGGACTGTCTGGAGGTAA 60.252 55.000 17.76 0.00 0.00 2.85
2327 3530 0.251653 AAGCGGACTGTCTGGAGGTA 60.252 55.000 17.76 0.00 0.00 3.08
2328 3531 1.534235 AAGCGGACTGTCTGGAGGT 60.534 57.895 17.76 5.58 0.00 3.85
2329 3532 1.216710 GAAGCGGACTGTCTGGAGG 59.783 63.158 17.76 0.00 0.00 4.30
2330 3533 1.153939 CGAAGCGGACTGTCTGGAG 60.154 63.158 17.76 4.17 0.00 3.86
2331 3534 1.602605 TCGAAGCGGACTGTCTGGA 60.603 57.895 17.76 4.22 0.00 3.86
2332 3535 1.444553 GTCGAAGCGGACTGTCTGG 60.445 63.158 17.76 6.87 34.09 3.86
2333 3536 0.109086 ATGTCGAAGCGGACTGTCTG 60.109 55.000 12.29 12.29 37.81 3.51
2334 3537 1.402259 CTATGTCGAAGCGGACTGTCT 59.598 52.381 7.85 0.00 37.81 3.41
2335 3538 1.400846 TCTATGTCGAAGCGGACTGTC 59.599 52.381 0.00 0.00 37.81 3.51
2336 3539 1.460504 TCTATGTCGAAGCGGACTGT 58.539 50.000 7.05 0.00 37.81 3.55
2337 3540 2.783828 ATCTATGTCGAAGCGGACTG 57.216 50.000 7.05 0.00 37.81 3.51
2338 3541 3.802948 AAATCTATGTCGAAGCGGACT 57.197 42.857 7.05 0.00 37.81 3.85
2339 3542 3.617263 ACAAAATCTATGTCGAAGCGGAC 59.383 43.478 0.00 0.00 37.45 4.79
2340 3543 3.857052 ACAAAATCTATGTCGAAGCGGA 58.143 40.909 0.00 0.00 0.00 5.54
2341 3544 4.334443 CAACAAAATCTATGTCGAAGCGG 58.666 43.478 0.00 0.00 0.00 5.52
2342 3545 3.780801 GCAACAAAATCTATGTCGAAGCG 59.219 43.478 0.00 0.00 0.00 4.68
2343 3546 4.722194 TGCAACAAAATCTATGTCGAAGC 58.278 39.130 0.00 0.00 0.00 3.86
2344 3547 5.569059 GGTTGCAACAAAATCTATGTCGAAG 59.431 40.000 29.55 0.00 0.00 3.79
2345 3548 5.009110 TGGTTGCAACAAAATCTATGTCGAA 59.991 36.000 29.55 0.00 0.00 3.71
2348 3551 6.215845 AGTTGGTTGCAACAAAATCTATGTC 58.784 36.000 29.55 11.14 37.52 3.06
2350 3553 6.700960 TGAAGTTGGTTGCAACAAAATCTATG 59.299 34.615 29.55 0.00 37.52 2.23
2354 3557 5.989551 ATGAAGTTGGTTGCAACAAAATC 57.010 34.783 29.55 23.81 37.52 2.17
2355 3558 5.006552 CGAATGAAGTTGGTTGCAACAAAAT 59.993 36.000 29.55 21.98 37.52 1.82
2358 3561 3.443037 CGAATGAAGTTGGTTGCAACAA 58.557 40.909 29.55 17.93 37.52 2.83
2359 3562 2.797792 GCGAATGAAGTTGGTTGCAACA 60.798 45.455 29.55 13.95 37.52 3.33
2360 3563 1.786579 GCGAATGAAGTTGGTTGCAAC 59.213 47.619 21.59 21.59 35.43 4.17
2364 3567 4.330074 CCTACTAGCGAATGAAGTTGGTTG 59.670 45.833 0.00 0.00 33.26 3.77
2365 3568 4.222145 TCCTACTAGCGAATGAAGTTGGTT 59.778 41.667 0.00 0.00 37.40 3.67
2371 3574 2.288518 GGCCTCCTACTAGCGAATGAAG 60.289 54.545 0.00 0.00 0.00 3.02
2373 3576 1.329256 GGCCTCCTACTAGCGAATGA 58.671 55.000 0.00 0.00 0.00 2.57
2376 3579 1.329256 GATGGCCTCCTACTAGCGAA 58.671 55.000 3.32 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.