>input_sequence_81629
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----------------------------------------------------------------ATGGCGAGCACTACCA
AGGTAGTGGTGATCTTTGGCATTCTTGTTTTACTGCAGGTGTCATGCACCGCCAGTGAGGTCCGCGACCTCCCGGCGGTG
ATGTCGGTAAACGGCTTCGGGAACGGAGAGGAGGGCGGGCCAGCGAGCTGCGACGGCCAGTACCACAATGACGACCTCTT
CCTCGTGTCGATGGCTTCAAAGTGGTACGGGACTGGCCTCCGGTGCGGAAAGATGATCAGCATCAAGAGATTGATCGGGA
CCTCCGTGCAGGCCATGGTCGTGGACGATTGCGGGG------ACGGCTGCGGAGATAACGAGATCAGTACATCGGCCGCT
GTGTGGAAGGCCTTGGGGACCGACACCAGTACCGGCGAGGTTCCCGTTCTCTGGTCGGACGTCTAA--------------
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>chr6A_1_TraesCS6A01G391300
CGAGAGCGTTGAAGACCACGCGGGCGCCATGATATGTTGTGTGTGGTAGCAACGCTGCTATGGCCATGGGGTTTTTATA-
-CTTACAATTATGTGTTCGATTTTCCATGGTACTGCAGTTAGCCTTGCGCGTACAGGAATGCCTAGCTAGGGAAATGATT
GCGCAACCACCATGCATGATCTATCTACCTGATCAATGTCTATCTTTTCGGACTCTGGACGGACGTGGATATATCAAGCG
ACAAAAGCAATCACGTCGGAGACGAAAGCATGCACACCGCCGATGGACATGCGACAAGCTGGCTAAAGTCATGCTTTATC
CATCCGTTTCTCTAAGCGGTTGGAGCTGGTGTTTCCATCCATGCACGGCGACGTATCTTTTGCTGGAGTCTACGTGCCCC
TCCATTGATCGATGACGTTCCATGCGCCACTAAAACAGTGCACTCATACACCCTGCCCTAGGGGTGGAGCGTGGCAAGAG
AAGGTAGACACACGAAAGAAAAGAAGTGGTACACAGCCGACAATTTTGCGGCCGATGCATGTACGGCACTAGCTAATCAC
AGTTAGATTAAATCCCTCCATAAATAATGAACATGAGATCCTACCATCATCCACATGCCGTACATAAACAACGTGTGCGA
AGCTATATATTCCGATCGACAAAACACACTGTATTGAGAAAAAGAAGGGGCA-------TGCTATCTCCCTATTACATTT
TGCCCTTAGGTCCATGCACGAAATCCAAAAACAAGCGTGGTCTCAACAATGCAAGAGTTTGTTAAAGCGTGGACAGGAGA
GAAT--CTACTTTGTCTGCAGGCCTGGACGACTAGTTCTCCGACGAGTCACACGAGGGCGGGTCGGCGTGCACATGTGTA
GCTACGTCGCCCGATTTGTCTCCAGGATGCTGCACGAGCCTATATA-ATAAACTCTGAGAGAG----ACCACA----CTG
GGAAAGGAGAGTGCAAACGACTAGCTT-A---TATAAACACAAGCAGGAACTCTCATATTTACCATGGCGAGCACTACCA
AGGTAGTGGTGATCTTTGGCATTCTTGTTTTACTGCAGGTGTCATGCACCGCCAGTGAGGTCCGCGACCTCCCGGCGGTG
ATGTCGGTAAACGGCTTCGGGAACGGAGAGGAGGGCGGGCCAGCGAGCTGCGACGGCCAGTACCACAATGACGACCTCTT
CCTCGTGTCGATGGCTTCAAAGTGGTACGGGACTGGCCTCCGGTGCGGAAAGATGATCAGCATCAAGAGATTGATCGGGA
CCTCCGTGCAGGCCATGGTCGTGGACGATTGCGGGG------ACGGCTGCGGAGATAACGAGATCAGTACATCGGCCGCT
GTGTGGAAGGCCTTGGGGACCGACACCAGTACCGGCGAGGTTCCCGTTCTCTGGTCGGACGTCTAACTGCAACATGGTGC
TCGGCTTAAAGATGAAAATTTTCACCGTAAATCAAGTAATCCGCTTTCGACTTCTCAGCAGTGATAGTTTGTCAGCATAG
TCGTTACTACTTGCTCGCCTTCACGGCAGAGTA--TAGTTGATAAAATAAAATACTACATGTGCACATGCATATGCATGA
CGGGAGCGGATAATATGCTTATATCTACGGACGAGGATTTGGAGCACTCGGGTGCTCCGCACCCCTATACG---------
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------------------------------------------------------------------------AACAATTC
ATTCAAAAATATACCGGGAAATTTGGAAAAAAACATGGGATTTTGGGATATCAAACGTGGGTTCCCGATCTACTCCCGTG
TGAAATTTCATGAA------------------------------------------------------------------
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----------------------------------------------AAAATACCAGGAAACGTATTCAGGGCAAAAAAGA
CAAAAAATTCCTATATATAGAAAAAAACTGTTTGGGTAGATTTTTGTTCGGACAGTATTTCCTTCCCCATGAATAAGTTT
TTTGGAATT-----------------------------------------------------------------------
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--------------------------------------------TTTTCACAAAATTTCACATGGGGGTAGATTGGGAAA
CCAGG---------------------------------------------------------------------------
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----------------------------------------------------TTTGATATTCCCAAATTTCAGTTTTTTT
TGGTATT---------------TTTTATGATTATTTTTCGTATAGGGATGTGGAGCATCCAGGAGCTCCTGTGTATTTTC
CTATATCTACTCCCTTTGCTACTAAATATATGTCTTTTGATAGATTTCAGTTTTTTTGAGGGAAATGCCATCATGGCGGT
TTATATTTCATGTGAGAATAAAGATACATCGTTTGTTAAAACATCCACTAAGAAACCCGGGGGCTCCGATTTCCAAACAA
TTGTTCGAGACACCTCCGAGTTCTTAGCTAGCACATCCGCCGCCATATTGGCTTCCCGAGGGCAATGGCTAAAAACTATA
GAGATAAAATTGCTAGATAAGAAAGTGCATTCTTCATGTATTGCCGCTGCTGGTCCTAATGAATTCCCGCCACTCATCAT
GATCTCGATTACCTCCAGACAGTCCGCTTCGACATAGATTTTGTTGCAACCAACTTCATTCGCTAGTAGGAGGCCATC--
-----------------------------------------------------
>chr6D_1
CGAGAGCGTTGAAGACCACGCGGGCGCCATGATATGTTGTGTGTGGTAGCAACGCTGCTATGGCTATGGGGTTTTTATAG
ACTTACAATTCGGTGTTCGATTTTACATGGTACTGCAATAAGCCTTGCGCGTACAGGAATGCCTAGCTAGGGAAATGATT
GCGCAACCAGCATGCATGATCTATC----------------------TCGGACTCTGGACGGACGTGGATATATCATGCG
ACAAAAGCAATTACGTCGGAGACGAAAGCATGCACACCGCCGACGGACATGCGACAAGCTGGCTAAAG-----CTTTATC
CATCCGTTTCTCTAAGCGGTTGGAGCTGGTGTTTCCTTCCGT----GGCGACGTATCTTTTGCTGGAGTCTACGTACCCC
TCCATTGATCGATGACGTTCCACGCGCCACTAAAACAGTGCACTCATACACCCTGCCCTAGGGTTGGAGCGTGGCAAGAG
AAGGTAGACACACGAAAGAAAAAAAGTGGTACGCAGCCGACTATTTTTCGGTCGATGCAAGTACGGCACTAGCTAATCAC
CATTAGATTAAATCCCTCCATATATAATGAACATGAGATCCTACCATCATCCACATGCCGTACATAAACAACGTGTGCGA
AGCTAT----TCCGATCTAAAAAACACACTGTACTGAGAAAAAGAAGGGGCACTGCTATCT-----CCCCGTTACCATTT
TGCCCTTAGGTTCATGCACGAAATCCAAAAACAAGCGTGGTCTCAACAATGCAAGAGTTTGTTAAAGCATGGACAAGAGA
GAATCACTACTTTGTCCGCAGGCCTGGACGGCTAGTTCTCCGACGAGTCACACGAGGGCGGGTCGGCATGCACATCTGTA
GCTACGTCCCCCGATTTGTCTCCAGGATGCTGCACGAGCCTATATA-ATAAACTCTGAGAGAG----ACCACA----CTG
GGAAAGGCAAGTGCAAACGACTAGCTT-A---TGTAAACACAAGCAGGAACTCTCATATTTACCATGGCGAGCACTACCA
AGGTAGTGGTGATCTTTGGCATTCTTGTTTTACTGCAGGTGTCATGCACCGCCAGTCAGGTCCGCGACCTCCCGGCGGTG
ATGTCGGTAAACGGCTTTGAGAACGGAGAGGAGGGCGGGCCAGCGAGCTGCGACGGCCAGTACCACAGCGACGACCTCTT
CCTGGTGTCGATGGCTTCAAAGTGGTACGGGCCCGGCCTCCGGTGCGGCAAGATGATCAGCATCAAGAGATTGATCGGGA
CCTCCGTGCAGGCCATGGTCGTGGACGATTGCGGGG------ACGGCTGCGGAGATAACGAGATCAGTACATCGGCTGCT
GTGTGGAAGGCCCTGGGGATCGACACCAGTACCGGCGAGGTTCCGGTCCTCTGGTCGGACGTCTAACTGCAACATGGTG-
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>chr6B_654
TCT-----------------------------------------------------------------------------
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------------------ACAAAACACACTGTATTGAGAAAAAGAAGGGGCACTGCTAGTGCTATCTCCCTATTACATGT
TGCCCTTAGGTCCATGCATGAAATCCAAAAACAAGCGTGGTCTCAACAAAGCAAGAGTTTGTTAAAGCATGGACAGGTGA
GAATCACTACTTTGTCTGCAGGCCTGGACGACTAGTTCTCCGACGAGTCACACGATGGCGGG-CGGCATGCACATGTGTA
GGTACGTCCCTC--TTTGTCTGCAGGCTGCAGCACGACGTCGTATATACAAACTCCGAGAGAA----AACACACAGTCAG
GGCAAGCCAACTGCAAG---CTAGCTT-AGCTTATAAACCCAAGAAGGACCTCTCTTATTTACCATGGCGAGCACTACCA
AGGTAGTGGTGATCTTTGCCATTCTTGTTTTCCTGCATGTGTCATGCACCGCCAGTCAGGTCCGCGACCTCCCGGCGGTG
ATGTCGGTAAATGGCTTCCAGAACGGAGAGGAGGGCGGGCCAGCAAGCTGCGACGGCCAGTACCACAGCGACGACCTCTT
GCTCGTGTCGATGGCTTCAAAGTGGTACGGGCCTGGCCTCCGGTGCGGAAAGATGATCAACATCAAGAGATTGATCGGGA
TATCCGTTCAGGCCATGGCCGTGGACGATTGCGGGG------ACGGCTGTGGAGATGACGAAATCAGTACATCGGCCGCT
GTGTGGAAGGCCTTGGGGATTGACACCAGCATCGGTGAGGTGCCTGTCCTCTGGTCGGATGTCTAACTGCAACATGATGC
TCGGCTTAAAGATGAGATTGTTCACT---------GTAATCCGCTTTTGAATTCTGAGCAGCATTAGTGTGTCGGCATAG
TTGTTGCAACTTGCTCGTCTACACGGCAGAGTTCTTAGTTGATAAAATAAGAAAATACATGTGTACGTGGATATGCATGA
TGTGAGTGGATAATCTGCTTATAT--------------------------------------------------------
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>chr6D_666
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---------------------------ACTGTATTGAGGACAAAGATGAAGCAATAG---T-----TCCCTATGACATGT
TGCCCTCGCTC-----CATGAAATCCAAAAACAAGCGTGGTCTCAACGATGCAAGAGTTTGTTAATGCA-GGAGAGGAGA
GAATCCTTACTTTGTC--------------ACGAGTTCTGTGACGAGTCACACGA----GGG-CCGTATGCACTTGTGTA
GGTACGTCCATCGTTTTGTCTGCAGGCTCCAGAACGAGGCT---TATATAAACTCAGTGAAAA----AGCACA----CAG
GGCAAGCCAACTGCAAG---CTAGCTT-AC-----AAACGCAAGAAGCAGCTCAATC----ACCATGGCGAGCACTAGCG
AGGTCGTGGCGATTTTTGCCATTCTGGTTTTCCTGCAGGTGTGGAGCGCCGCCGGGCAAGTCTACAACGTCCCAGCTGTG
ATGTCGCTGAACGGCTTCGAGCAAGGAGAGGAGGGCGGGCCGGCGAAGTGCGACGGCCAGTACCACAGCGACGACCTCTA
CCTGGTGGCGATGACCTCAGTGTGGTATGGGCCAGGTCTCCGGTGTGGCAAGATGATCAGCATCAAGAGCTCTGGCGGGA
GCAGCCTGCAGGCCATGGTGGTGGACGAGTGCGACTCGGACAACGGCTGCGGCGCTACCGAGATCAGCACGTCGGCCGCC
GTGTGGAAGTTCTTTGGGCTTGACACCAGTGTCGGCGAGGTGGCCGTCACCTGGTCGGACGTCTAA--------------
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>chr6D_666
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---------------------------ACTGTATTGAGGAAAAAGATGAAGCAATAG---T-----TCCCTATGACATGT
TGCCCTCGCTC-----CATGAAATCCAAAAACAAGCGTGGTCTCAACGATGCAAGAGTTTGTTAATACA-GGAGAGGAGA
GAATCCTTACTTTGTC--------------ACGAGTTCTGTGACGAGTCACATGA----GGG-AGGCATGAACATGTGTA
TGTACGCCCCTTGCTTTGTCTGCAGGCTTCAGAACGAGGCT---TATATAAACTCAGAGAGAATGGGAGCACA----CAG
GGCAAGCCAACTGCGAG---CTAGCTTTAC-----AAACGCAAGCAGCAGCTCAATA----ACCATGGCGAGCACTAGCA
AGGTCGTGGCGATTTTTGCCATTCTGGTTTTCGTGCAGGTGTGGTGCGCCGCCGGGCAAGTCTACAACGTCCCAGCGGTG
ATGTCGCTGAACGGCTTCGAGCAGGGAGAGGAGGGCGGGCCGGCGAAGTGCGACGGCCAGTACCACAGCGACGACCTCTA
CCTGGTGGCGATGACCTCAGTGTGGTATGGGCCAGGTCTCCGGTGTGGCAAGATGATCAGCATCAAGAGCTCTGGCGGGA
GCAGCCTGCAGGCCATGGTCGTGGACGAGTGCGACTCGGACAACGGCTGCGGCGCTACCGAGATCAGCACGTCGGCTGCC
GTGTGGAAGTTCTTTGGGCTTGACACCAGTGTCGGCGAGGTGGCCGTCACCTGGTCGGACGTCTAATTCAAATGCTTACT
TGCTTGTACTG---------------GTAAATCCACTCATCTGCTTTCAACTCCAAAGTCTC------------------
--------------------------------TCCTCCATGAAATAACTAGTATTTACATGCATAC--GCACATGCACGA
TGGGTGCGGGTAATCTGCTTATATGTAAGTGTCAACCAATGTAAGCTTGTTTGTGACGGTATAAGTCACTGTATGTAGAC
GATCTCAGCTTGCTAGTCCTCGATGCGCAATACCCGGTAAACTTGGTCTGTATTTTTCTCCTTATAAGTTCAAATTCTCC
CAAATTCGGTATTTTCCTTTTCCTTCAAATCTAAAGATAATTAAAGCAGCATCCCTACTTCGTCAAAACGATAAAAAAAA
ATTGAAAACTGTGCTAGGAAAATATTCATGGAGTCAATATCATCTTCAAAAACTCGACGTGAATGAAATAACAATGTAAC
ACTACAAGAAACAGAGACACACACAGAGAAACATGTATACAGGTTTACATATGGGTCGCCAAATAGGAACTTTAAATTTC
CAAAACATTACAATACAACTGGGAATGATGGATGCATGGAATGACATGTTCGAACGAAAGAAAAAATTATATCTATTGTT
ACATTAATCATGGACGCTTGAAATGTCGCATGCAACAACCTTAGAGAAAATAAGAGGACACGCATGAAACCAATGTTTGA
CAAAAAGAAAAGGTGGATGCATAATTACATATGGATGATCTTCACACTCTCACCCTCCTGTAGCCTCCCCGAGCGAGGCG
AACGGGGAGGCCTCTCCTTCCCCTCACCGCTGAGCGCCCCCCTCTCCCTCCCGCCGCTGCTGTCGGCTGGCGCGGCCGGG
CGTTTGCTCGTGCAGCGCTGCTCAAAGCCGGCAGTGGCGGCCCCCCTCCTCTTCCCAACGCGGATCCTGGCTCGGACGGC
GGTGTACCTCGGCGGGCGGTGCTCCGGTGCAGATCTGGCGGCGGCGCGCCCCCTTGGCCGCAATGGCGGCTGGCGGCGGG
GGTTGGCTGGCGGCGCCCTGCAAGCCTAGATTTGGGCCGTTTATGCCCGAACTGGGTCAGGGTGGGCCGGTTTGGAGTCG
AGCGGGTCGCCTCCGGCTGGTCTTGCGAGCTACCACTACTGCATGAATGACTAGCAGTGGCGGGTGGAACAAACCCATTA
GTGGTGGGCAAGGCTCTCAGGGGCGCCCGCCACTGACCTCCCGCCACTGCTTGCAAGGCATCAGTGATGGGTGTGCGCCC
GCCATTGTTAAAGACCTACCAGTGGCCGGCTTTACCTAGAGCCTGCCACAAGTATAATCTACTAACAGCACTAACAACAC
AAACTAGCAATGGCGGTCCTTGTTCCCCGCCCACCACGGGTAAGTTTTTACAAAATTTAAAAAAATAGTAGGCCCTCCCG
GCGCTGCAGTAGCGACGCTCAACGGAGGGTCCCTTTCCCTGCTTGGCAGGCCGGCACACGTGCGTGCGGAAGAAAGAGGT
TGAGTCAGAGTAGAGTGGTATTTTTAAAGTCGAATAAAGAGGCATTTGTGTAATGTCTGTTCTTTTACCGTAAATAGGTT
CAATTGGATACAATGGCATCTGAACAAGCATGGGAAAGTTGCCATTGTATTTTTTGAAGTTTCATAATTTCTGTGACATG
TCTCGAATTGACGAAAACACTATTATACGATTAATTTTC-----------------------------------------
---------------------------------------------------TTTATTGAGGGAATATACTCCCTCCTTTT
CTCAGTAGAGTAGTGCATCGAGAAGTAAAAA-------------------------------------------------
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----------------------------TCAATATATCTTCCCTTGTTACCAAATGCACTCTAATTGAGAAAAGGCGGAA
GCTCCATAGAATCCAAAAACAAGCGTGGTCTCAACAATGCAACAGCCTGTTAA
>chr6B_1032
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---------------TTGGCATTCTTGTTTTACTGCAGGTGTCATGCACCGCCAGTCAGGTCCGCGACCTCCCGGTGGTG
ATGTTGGTAAACGGCTTCCAGAATGGAGAGGAGGAAGGGCCAACGAGCTGCGACGGCCAGTACCACAGCGACGACCTCTT
CCTAGTGTCGATGGCTTCAAAGTGGTACGGGCCTGGCCTCCTGTGCGGCAAGATGATCAGCATCAAGAGATTGATCGGGA
TCTCCGTGCAAACCATGGTCGTGGATGACTGCGGGG------ACGGCTACGGAGATAACGGAATCAGTACAGCGGCCGCT
GTGTGGAAGGCCTTGGGGATTGACACCAGCATCGGCGAGGTTCCCGTCCTCTGGTCGGACGTCTAAGTGCAACATGGTGC
TCGGATTAAAAGGGAAAATTTTCACCGTAAATCGAGCAATCCGCTTTCGACTTCTCAGCAGTGTTAGTGTGTCAGCATAG
TCGTTACTACTCGCTCGCCTTCACGGCAGAGTAAGTAGTTGATAAAATAAGAAT--------------------------
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>SNPs
----------------------------------------------------------------S---------------
----------SS------------S------------S-S----------------------------------------
---------S---------------SSSSSSSSSSSSSSSSSSSSSS-----------------------------S---
-----------S-------------------------------S------------------------SSSSS-------
------------------------------------S---S-SSSS-----------------------------S----
----------------------S----------------------------------------S----------------
----------------------S---------S--------S-----S---S-------S--------------------
SS--------------------S---------------------------------------------------------
------SSSS-------S--------------------------------------------------------------
--------------------------------------------------------------------S-----------
-------------------------------------------------------------------S------------
--------S-----------------------------------------------------------------------
-------SS-----------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-------------------S-----------------------------------------------SS-----------
-------------------------------S------------------------------------------------
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-------------------S---------------------------S--------------------------------
---------------------------------S-----------------------------S----S-----------
--------------------------------------------------S-S-S--------S--S-------------
S-------------S---------S--S-SSSS-SSSSS--S-SSSS-SSSSSSSS-S-S-SSSS-SSSS----------
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--------------------------------------------------------------------------S--SSS
---S----S-S-S-SS-----S-SSSS-SSS-SSSSSSSSSS-SSSS-S-SSSSSSSS-S-SSSSSS--SSSSSSSSSSS
SSS-SSSSS-SS-S------------------------------------------------------------------
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----------------------------------------------------SS----S---S--SS-SSSS-SSSSS--
------SSSSSSS-SS--SS-S--SS--SSS-S-SSS-SS--SSSSS--SS--SS-SS-SSSSS-S--SS--SSS--SSS
SSS--SSSS-----------------------------------------------------------------------
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------------------------------------------------S---------S-S-SSSSS----SSSSSSSSS
S-SSS---------------------------------------------------------------------------
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---------------------------------------------------------SS--S-SS------S--SSSS-S
-SSSSSS-----------------S--S-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------SSSS-SS-S-SSSSS-
S-SSS-SSSS-SSSSS-SSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S---SS--SSS---SS-----S-S--S--SSSSSS--S-SSSSSSS--
-----------------------------------------------------
>forward_361
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---------------------GGAGCTGGTGTTTCCATCCA---------------------------------------
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>reverse_1655
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------------------------------------------------------CTCCGCACCCCTATACGAAC------
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