Multiple sequence alignment - TraesCS6A01G391200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G391200 chr6A 100.000 2657 0 0 1 2657 606092864 606090208 0.000000e+00 4907.0
1 TraesCS6A01G391200 chr6A 96.610 413 11 1 2247 2656 180939493 180939081 0.000000e+00 682.0
2 TraesCS6A01G391200 chr6A 95.884 413 12 2 2249 2656 556222125 556222537 0.000000e+00 664.0
3 TraesCS6A01G391200 chr6A 95.422 415 14 2 2247 2656 556228743 556229157 0.000000e+00 656.0
4 TraesCS6A01G391200 chr6A 88.559 236 18 5 2016 2248 15570212 15569983 7.240000e-71 278.0
5 TraesCS6A01G391200 chr7B 84.480 1482 186 24 556 2016 733461461 733460003 0.000000e+00 1423.0
6 TraesCS6A01G391200 chr7D 83.886 1477 203 20 556 2013 630794147 630795607 0.000000e+00 1376.0
7 TraesCS6A01G391200 chr7D 89.596 644 45 13 2027 2656 618818282 618818917 0.000000e+00 798.0
8 TraesCS6A01G391200 chr7D 81.452 248 26 12 109 346 566313871 566314108 4.520000e-43 185.0
9 TraesCS6A01G391200 chr7D 81.633 98 13 4 347 441 310972876 310972971 2.840000e-10 76.8
10 TraesCS6A01G391200 chr2A 97.842 556 9 2 1 555 4630150 4630703 0.000000e+00 957.0
11 TraesCS6A01G391200 chr2A 96.296 567 8 2 1 556 681505884 681505320 0.000000e+00 918.0
12 TraesCS6A01G391200 chr2A 89.732 224 19 3 2027 2247 457211151 457210929 1.560000e-72 283.0
13 TraesCS6A01G391200 chr1A 98.351 485 8 0 1 485 497922532 497922048 0.000000e+00 852.0
14 TraesCS6A01G391200 chr1A 89.381 226 18 5 2027 2248 514878044 514878267 2.010000e-71 279.0
15 TraesCS6A01G391200 chr1A 88.938 226 19 6 2027 2248 515131576 515131799 9.370000e-70 274.0
16 TraesCS6A01G391200 chr6D 91.538 520 34 3 556 1072 460219689 460219177 0.000000e+00 708.0
17 TraesCS6A01G391200 chr6D 92.574 202 12 2 2050 2248 289365598 289365397 1.200000e-73 287.0
18 TraesCS6A01G391200 chr4A 96.350 411 14 1 2247 2656 60898047 60897637 0.000000e+00 675.0
19 TraesCS6A01G391200 chr4A 96.126 413 13 1 2247 2656 300072025 300071613 0.000000e+00 671.0
20 TraesCS6A01G391200 chr4A 92.093 215 13 2 344 555 602749995 602749782 1.550000e-77 300.0
21 TraesCS6A01G391200 chr4A 88.938 226 19 6 2027 2248 613688864 613688641 9.370000e-70 274.0
22 TraesCS6A01G391200 chr4A 87.500 56 5 1 501 556 405991527 405991474 2.210000e-06 63.9
23 TraesCS6A01G391200 chr5A 96.117 412 14 1 2247 2656 32911589 32912000 0.000000e+00 671.0
24 TraesCS6A01G391200 chr5A 95.884 413 14 1 2247 2656 535414788 535415200 0.000000e+00 665.0
25 TraesCS6A01G391200 chr5A 76.000 200 30 13 361 556 368129628 368129443 1.310000e-13 87.9
26 TraesCS6A01G391200 chr7A 95.642 413 15 2 2247 2656 38896368 38895956 0.000000e+00 660.0
27 TraesCS6A01G391200 chr7A 95.631 412 14 4 2248 2656 365945432 365945842 0.000000e+00 658.0
28 TraesCS6A01G391200 chr7A 89.439 303 20 3 53 345 730842613 730842313 3.230000e-99 372.0
29 TraesCS6A01G391200 chr7A 89.427 227 16 8 2027 2248 717946889 717947112 2.010000e-71 279.0
30 TraesCS6A01G391200 chr7A 84.146 82 8 4 362 440 182380226 182380147 1.020000e-09 75.0
31 TraesCS6A01G391200 chr7A 97.368 38 1 0 1 38 730842649 730842612 6.140000e-07 65.8
32 TraesCS6A01G391200 chr3A 96.034 353 11 2 207 559 338926985 338926636 2.970000e-159 571.0
33 TraesCS6A01G391200 chr3A 95.192 208 10 0 1 208 338951692 338951485 1.970000e-86 329.0
34 TraesCS6A01G391200 chr3A 89.778 225 18 4 2027 2248 509874155 509873933 1.560000e-72 283.0
35 TraesCS6A01G391200 chr4B 89.197 361 17 12 1 346 334107448 334107095 5.250000e-117 431.0
36 TraesCS6A01G391200 chr4B 90.610 213 17 2 344 555 334106927 334106717 2.010000e-71 279.0
37 TraesCS6A01G391200 chr4B 82.323 198 25 2 110 297 174064706 174064509 2.120000e-36 163.0
38 TraesCS6A01G391200 chr4B 93.750 48 2 1 509 556 449656684 449656638 1.320000e-08 71.3
39 TraesCS6A01G391200 chr2D 90.610 213 10 2 143 345 299383788 299384000 9.370000e-70 274.0
40 TraesCS6A01G391200 chrUn 76.923 208 30 12 154 345 93998650 93998855 4.680000e-18 102.0
41 TraesCS6A01G391200 chr1D 74.894 235 44 12 343 570 453329781 453330007 2.820000e-15 93.5
42 TraesCS6A01G391200 chr5D 76.142 197 30 11 164 345 447693667 447693861 1.310000e-13 87.9
43 TraesCS6A01G391200 chr5D 83.784 74 9 2 489 560 458737564 458737492 1.710000e-07 67.6
44 TraesCS6A01G391200 chr3B 88.000 75 4 3 489 558 479302222 479302148 1.690000e-12 84.2
45 TraesCS6A01G391200 chr6B 95.556 45 1 1 512 556 17994116 17994159 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G391200 chr6A 606090208 606092864 2656 True 4907 4907 100.0000 1 2657 1 chr6A.!!$R3 2656
1 TraesCS6A01G391200 chr7B 733460003 733461461 1458 True 1423 1423 84.4800 556 2016 1 chr7B.!!$R1 1460
2 TraesCS6A01G391200 chr7D 630794147 630795607 1460 False 1376 1376 83.8860 556 2013 1 chr7D.!!$F4 1457
3 TraesCS6A01G391200 chr7D 618818282 618818917 635 False 798 798 89.5960 2027 2656 1 chr7D.!!$F3 629
4 TraesCS6A01G391200 chr2A 4630150 4630703 553 False 957 957 97.8420 1 555 1 chr2A.!!$F1 554
5 TraesCS6A01G391200 chr2A 681505320 681505884 564 True 918 918 96.2960 1 556 1 chr2A.!!$R2 555
6 TraesCS6A01G391200 chr6D 460219177 460219689 512 True 708 708 91.5380 556 1072 1 chr6D.!!$R2 516
7 TraesCS6A01G391200 chr4B 334106717 334107448 731 True 355 431 89.9035 1 555 2 chr4B.!!$R3 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 929 0.106868 TCCTCGGCATCTTCTCCGTA 60.107 55.0 0.47 0.0 45.44 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1863 0.251916 TTTCTATCAGGGTGTGCGGG 59.748 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.279271 GTGTGACCTGAGGCCATTAGT 59.721 52.381 5.01 0.00 0.00 2.24
579 765 1.372499 GCGTACGTCAAGTCTGCCA 60.372 57.895 17.90 0.00 0.00 4.92
584 770 0.952497 ACGTCAAGTCTGCCATGCTG 60.952 55.000 0.00 0.00 0.00 4.41
660 846 2.885644 CCTTGTCCGACATCGCCG 60.886 66.667 1.09 0.00 38.18 6.46
728 914 4.899239 CGCGCCCTCACCATCCTC 62.899 72.222 0.00 0.00 0.00 3.71
743 929 0.106868 TCCTCGGCATCTTCTCCGTA 60.107 55.000 0.47 0.00 45.44 4.02
786 972 1.608025 CCACCGACATGCACTACAAGT 60.608 52.381 0.00 0.00 31.55 3.16
791 977 3.059884 CGACATGCACTACAAGTTCACT 58.940 45.455 0.00 0.00 28.28 3.41
881 1067 2.750350 CTGTCCTTGACCGCCCTT 59.250 61.111 0.00 0.00 0.00 3.95
1003 1192 0.039256 ACACGTGGCATGTTCAATGC 60.039 50.000 21.57 1.65 43.85 3.56
1077 1266 0.523072 CAACATCTTTGAGGGCGTGG 59.477 55.000 0.00 0.00 0.00 4.94
1078 1267 0.400213 AACATCTTTGAGGGCGTGGA 59.600 50.000 0.00 0.00 0.00 4.02
1079 1268 0.321653 ACATCTTTGAGGGCGTGGAC 60.322 55.000 0.00 0.00 0.00 4.02
1093 1282 0.959553 GTGGACCTCTCTCGTTGACA 59.040 55.000 0.00 0.00 0.00 3.58
1095 1284 0.244178 GGACCTCTCTCGTTGACACC 59.756 60.000 0.00 0.00 0.00 4.16
1152 1341 3.134127 GCGCTCCCCCACATCAAC 61.134 66.667 0.00 0.00 0.00 3.18
1161 1350 1.577328 CCCACATCAACTGCACCGTC 61.577 60.000 0.00 0.00 0.00 4.79
1162 1351 0.603707 CCACATCAACTGCACCGTCT 60.604 55.000 0.00 0.00 0.00 4.18
1164 1353 1.069703 CACATCAACTGCACCGTCTTG 60.070 52.381 0.00 0.00 0.00 3.02
1182 1371 2.264794 GACCTCCCACACGCGATT 59.735 61.111 15.93 0.00 0.00 3.34
1210 1399 2.098117 GCACCTGCCATCAGTAATGTTC 59.902 50.000 0.00 0.00 38.66 3.18
1239 1428 2.225491 TGCTGGCGATTTGTTTGAGTAC 59.775 45.455 0.00 0.00 0.00 2.73
1277 1466 5.221382 ACGTTGTTCTACTCAAGGTACACAT 60.221 40.000 0.00 0.00 40.46 3.21
1279 1468 6.527023 CGTTGTTCTACTCAAGGTACACATAG 59.473 42.308 0.00 0.00 0.00 2.23
1285 1474 4.157246 ACTCAAGGTACACATAGGACACA 58.843 43.478 0.00 0.00 0.00 3.72
1286 1475 4.591498 ACTCAAGGTACACATAGGACACAA 59.409 41.667 0.00 0.00 0.00 3.33
1292 1481 5.955959 AGGTACACATAGGACACAACATCTA 59.044 40.000 0.00 0.00 0.00 1.98
1296 1485 6.398918 ACACATAGGACACAACATCTAGTTC 58.601 40.000 0.00 0.00 38.74 3.01
1342 1545 3.744238 TGAACGAGATGTGTTCTTCCA 57.256 42.857 7.30 0.00 44.67 3.53
1343 1546 4.271696 TGAACGAGATGTGTTCTTCCAT 57.728 40.909 7.30 0.00 44.67 3.41
1347 1550 5.613358 ACGAGATGTGTTCTTCCATTTTC 57.387 39.130 0.00 0.00 33.74 2.29
1359 1562 5.459505 TCTTCCATTTTCCAGTGGGTTTTA 58.540 37.500 9.92 0.00 36.15 1.52
1433 1636 4.080356 AGCAATAATCAGTAGAGGTGCCAA 60.080 41.667 0.00 0.00 0.00 4.52
1455 1658 3.028850 AGGGAAGGTGATAATCGTCGAA 58.971 45.455 0.00 0.00 0.00 3.71
1479 1682 2.099756 CGTGATAGACTCCAGCATGTCA 59.900 50.000 0.00 0.00 35.81 3.58
1481 1684 2.099756 TGATAGACTCCAGCATGTCACG 59.900 50.000 0.00 0.00 35.81 4.35
1487 1690 1.820906 CCAGCATGTCACGGGATGG 60.821 63.158 0.00 0.00 0.00 3.51
1491 1694 0.960364 GCATGTCACGGGATGGTGTT 60.960 55.000 0.00 0.00 39.00 3.32
1509 1712 4.202326 GGTGTTCTTCTTAGGGAGACACAA 60.202 45.833 13.83 0.00 36.60 3.33
1535 1738 5.932455 TCTATTTGATGTCCAGATGATGCA 58.068 37.500 0.00 0.00 0.00 3.96
1542 1745 3.893521 TGTCCAGATGATGCATGTTGAT 58.106 40.909 2.46 0.00 0.00 2.57
1548 1751 1.044231 TGATGCATGTTGATGGGGGC 61.044 55.000 2.46 0.00 0.00 5.80
1573 1776 1.216710 GACGAGAAGCAGTGGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
1599 1802 0.984230 TCCTTGAAGCCGGATTCAGT 59.016 50.000 31.60 0.00 40.16 3.41
1602 1805 2.636830 CTTGAAGCCGGATTCAGTGAT 58.363 47.619 31.60 0.00 40.16 3.06
1605 1808 3.531538 TGAAGCCGGATTCAGTGATTAC 58.468 45.455 30.32 2.86 34.31 1.89
1647 1850 5.530171 AGGATTTCGATCCATCATTGAAGTG 59.470 40.000 7.77 0.00 43.14 3.16
1657 1860 5.044919 TCCATCATTGAAGTGTACCCTTGAT 60.045 40.000 0.00 0.00 0.00 2.57
1660 1863 4.458989 TCATTGAAGTGTACCCTTGATTGC 59.541 41.667 0.00 0.00 0.00 3.56
1665 1868 1.377987 GTACCCTTGATTGCCCGCA 60.378 57.895 0.00 0.00 0.00 5.69
1687 1891 4.274459 CACACCCTGATAGAAATAAGCAGC 59.726 45.833 0.00 0.00 0.00 5.25
1697 1911 8.374743 TGATAGAAATAAGCAGCATGTATGGTA 58.625 33.333 0.00 0.00 39.31 3.25
1698 1912 9.388506 GATAGAAATAAGCAGCATGTATGGTAT 57.611 33.333 0.00 0.84 39.31 2.73
1699 1913 7.444629 AGAAATAAGCAGCATGTATGGTATG 57.555 36.000 0.00 0.00 39.31 2.39
1700 1914 7.000472 AGAAATAAGCAGCATGTATGGTATGT 59.000 34.615 0.00 0.00 39.31 2.29
1701 1915 8.156820 AGAAATAAGCAGCATGTATGGTATGTA 58.843 33.333 0.00 0.00 39.31 2.29
1702 1916 7.912056 AATAAGCAGCATGTATGGTATGTAG 57.088 36.000 0.00 0.00 39.31 2.74
1703 1917 4.963318 AGCAGCATGTATGGTATGTAGT 57.037 40.909 0.00 0.00 39.31 2.73
1704 1918 4.635223 AGCAGCATGTATGGTATGTAGTG 58.365 43.478 0.00 0.00 39.31 2.74
1705 1919 4.101585 AGCAGCATGTATGGTATGTAGTGT 59.898 41.667 0.00 0.00 39.31 3.55
1706 1920 4.449068 GCAGCATGTATGGTATGTAGTGTC 59.551 45.833 0.00 0.00 39.31 3.67
1707 1921 4.991056 CAGCATGTATGGTATGTAGTGTCC 59.009 45.833 0.00 0.00 36.64 4.02
1708 1922 4.040461 AGCATGTATGGTATGTAGTGTCCC 59.960 45.833 0.00 0.00 36.64 4.46
1711 1925 4.616553 TGTATGGTATGTAGTGTCCCTGT 58.383 43.478 0.00 0.00 0.00 4.00
1714 1928 6.842280 TGTATGGTATGTAGTGTCCCTGTTAT 59.158 38.462 0.00 0.00 0.00 1.89
1724 1938 5.057149 AGTGTCCCTGTTATCGAATAATGC 58.943 41.667 0.00 0.00 0.00 3.56
1730 1944 4.457810 CTGTTATCGAATAATGCCTTGCG 58.542 43.478 0.00 0.00 0.00 4.85
1733 1947 2.823196 TCGAATAATGCCTTGCGTTG 57.177 45.000 3.87 0.00 38.31 4.10
1734 1948 2.080693 TCGAATAATGCCTTGCGTTGT 58.919 42.857 3.87 0.00 38.31 3.32
1735 1949 3.263261 TCGAATAATGCCTTGCGTTGTA 58.737 40.909 3.87 0.00 38.31 2.41
1736 1950 3.874543 TCGAATAATGCCTTGCGTTGTAT 59.125 39.130 3.87 0.00 38.31 2.29
1737 1951 4.334203 TCGAATAATGCCTTGCGTTGTATT 59.666 37.500 3.87 0.00 38.31 1.89
1745 1959 3.262420 CCTTGCGTTGTATTAGCAGACT 58.738 45.455 0.00 0.00 42.19 3.24
1751 1965 5.119588 TGCGTTGTATTAGCAGACTGTTTAC 59.880 40.000 3.99 0.00 35.81 2.01
1792 2007 8.847196 AGTAATATTTGTGATACTACTCGAGCA 58.153 33.333 13.61 0.00 0.00 4.26
1818 2033 7.665559 AGTTCCATGTCTGCACTTCTTATAAAA 59.334 33.333 0.00 0.00 0.00 1.52
1857 2076 8.899427 AAATAGTGTCTTCATCCATATGACAG 57.101 34.615 3.65 0.00 41.87 3.51
1863 2082 6.183360 TGTCTTCATCCATATGACAGTCAGAG 60.183 42.308 9.64 1.29 41.87 3.35
1881 2100 8.502387 CAGTCAGAGAATTTTCTTTCTGGTAAG 58.498 37.037 14.29 0.00 37.73 2.34
1885 2104 6.147985 AGAGAATTTTCTTTCTGGTAAGCGAC 59.852 38.462 0.00 0.00 37.73 5.19
1886 2105 5.763204 AGAATTTTCTTTCTGGTAAGCGACA 59.237 36.000 0.00 0.00 34.68 4.35
1889 2108 2.750948 TCTTTCTGGTAAGCGACACAC 58.249 47.619 0.00 0.00 0.00 3.82
1890 2109 2.101750 TCTTTCTGGTAAGCGACACACA 59.898 45.455 0.00 0.00 0.00 3.72
1891 2110 2.605837 TTCTGGTAAGCGACACACAA 57.394 45.000 0.00 0.00 0.00 3.33
1894 2113 1.464608 CTGGTAAGCGACACACAATGG 59.535 52.381 0.00 0.00 0.00 3.16
1895 2114 1.202710 TGGTAAGCGACACACAATGGT 60.203 47.619 0.00 0.00 0.00 3.55
1896 2115 1.463444 GGTAAGCGACACACAATGGTC 59.537 52.381 0.00 0.00 0.00 4.02
1898 2117 2.831685 AAGCGACACACAATGGTCTA 57.168 45.000 0.00 0.00 31.88 2.59
1901 2120 1.062587 GCGACACACAATGGTCTATGC 59.937 52.381 0.00 0.00 31.88 3.14
1902 2121 1.665679 CGACACACAATGGTCTATGCC 59.334 52.381 0.00 0.00 31.88 4.40
1903 2122 2.710377 GACACACAATGGTCTATGCCA 58.290 47.619 0.00 0.00 43.48 4.92
1904 2123 2.679837 GACACACAATGGTCTATGCCAG 59.320 50.000 0.00 0.00 42.47 4.85
1905 2124 2.040278 ACACACAATGGTCTATGCCAGT 59.960 45.455 0.00 0.00 42.47 4.00
1906 2125 3.084039 CACACAATGGTCTATGCCAGTT 58.916 45.455 0.00 0.00 42.47 3.16
1911 2130 4.832266 ACAATGGTCTATGCCAGTTTTTCA 59.168 37.500 0.00 0.00 42.47 2.69
1912 2131 5.304101 ACAATGGTCTATGCCAGTTTTTCAA 59.696 36.000 0.00 0.00 42.47 2.69
1914 2133 4.724399 TGGTCTATGCCAGTTTTTCAAGA 58.276 39.130 0.00 0.00 33.97 3.02
1915 2134 5.324409 TGGTCTATGCCAGTTTTTCAAGAT 58.676 37.500 0.00 0.00 33.97 2.40
1918 2137 6.808704 GGTCTATGCCAGTTTTTCAAGATTTC 59.191 38.462 0.00 0.00 0.00 2.17
1920 2139 8.084684 GTCTATGCCAGTTTTTCAAGATTTCTT 58.915 33.333 0.00 0.00 36.45 2.52
1945 2167 3.720818 AAAAACTTGTTGCGCTGTTTG 57.279 38.095 9.73 0.00 33.61 2.93
1946 2168 2.645730 AAACTTGTTGCGCTGTTTGA 57.354 40.000 9.73 0.00 32.32 2.69
1947 2169 2.645730 AACTTGTTGCGCTGTTTGAA 57.354 40.000 9.73 0.00 0.00 2.69
1949 2171 1.199624 CTTGTTGCGCTGTTTGAACC 58.800 50.000 9.73 0.00 0.00 3.62
1950 2172 0.524392 TTGTTGCGCTGTTTGAACCG 60.524 50.000 9.73 0.00 0.00 4.44
1951 2173 1.353804 GTTGCGCTGTTTGAACCGA 59.646 52.632 9.73 0.00 0.00 4.69
1952 2174 0.040425 GTTGCGCTGTTTGAACCGAT 60.040 50.000 9.73 0.00 0.00 4.18
1983 2205 6.805713 AGTTCACTAAATTTGTTGGGTTCTG 58.194 36.000 0.00 0.00 0.00 3.02
1985 2207 7.558444 AGTTCACTAAATTTGTTGGGTTCTGTA 59.442 33.333 0.00 0.00 0.00 2.74
1987 2209 7.881142 TCACTAAATTTGTTGGGTTCTGTATG 58.119 34.615 0.00 0.00 0.00 2.39
1992 2214 2.235016 TGTTGGGTTCTGTATGTTGCC 58.765 47.619 0.00 0.00 0.00 4.52
1993 2215 2.235016 GTTGGGTTCTGTATGTTGCCA 58.765 47.619 0.00 0.00 0.00 4.92
2001 2223 4.137116 TCTGTATGTTGCCATAGTGGAC 57.863 45.455 0.00 0.00 40.96 4.02
2013 2235 1.568504 TAGTGGACTAGCCTGTTGGG 58.431 55.000 5.06 0.00 37.63 4.12
2016 2238 0.770557 TGGACTAGCCTGTTGGGGTT 60.771 55.000 5.06 0.00 44.41 4.11
2017 2239 0.322546 GGACTAGCCTGTTGGGGTTG 60.323 60.000 0.00 0.00 44.41 3.77
2018 2240 2.551996 ACTAGCCTGTTGGGGTTGT 58.448 52.632 0.00 0.00 44.41 3.32
2019 2241 0.850784 ACTAGCCTGTTGGGGTTGTT 59.149 50.000 0.00 0.00 46.12 2.83
2020 2242 2.059490 ACTAGCCTGTTGGGGTTGTTA 58.941 47.619 0.00 0.00 46.12 2.41
2021 2243 2.039879 ACTAGCCTGTTGGGGTTGTTAG 59.960 50.000 0.00 0.00 46.12 2.34
2022 2244 1.145571 AGCCTGTTGGGGTTGTTAGA 58.854 50.000 0.00 0.00 44.41 2.10
2023 2245 1.497286 AGCCTGTTGGGGTTGTTAGAA 59.503 47.619 0.00 0.00 44.41 2.10
2024 2246 2.110011 AGCCTGTTGGGGTTGTTAGAAT 59.890 45.455 0.00 0.00 44.41 2.40
2025 2247 3.332485 AGCCTGTTGGGGTTGTTAGAATA 59.668 43.478 0.00 0.00 44.41 1.75
2026 2248 4.083565 GCCTGTTGGGGTTGTTAGAATAA 58.916 43.478 0.00 0.00 35.12 1.40
2027 2249 4.525100 GCCTGTTGGGGTTGTTAGAATAAA 59.475 41.667 0.00 0.00 35.12 1.40
2028 2250 5.186992 GCCTGTTGGGGTTGTTAGAATAAAT 59.813 40.000 0.00 0.00 35.12 1.40
2029 2251 6.627287 GCCTGTTGGGGTTGTTAGAATAAATC 60.627 42.308 0.00 0.00 35.12 2.17
2030 2252 6.435904 CCTGTTGGGGTTGTTAGAATAAATCA 59.564 38.462 0.00 0.00 0.00 2.57
2031 2253 7.039363 CCTGTTGGGGTTGTTAGAATAAATCAA 60.039 37.037 0.00 0.00 0.00 2.57
2036 2258 7.676043 TGGGGTTGTTAGAATAAATCAAATCCA 59.324 33.333 0.00 0.00 0.00 3.41
2045 2267 5.954153 ATAAATCAAATCCAATGCCACCA 57.046 34.783 0.00 0.00 0.00 4.17
2047 2269 4.847990 AATCAAATCCAATGCCACCATT 57.152 36.364 0.00 0.00 42.26 3.16
2081 2303 0.587768 CAAGCAATCACACGAGCACA 59.412 50.000 0.00 0.00 0.00 4.57
2085 2307 1.069022 GCAATCACACGAGCACAACAT 60.069 47.619 0.00 0.00 0.00 2.71
2087 2309 2.168326 ATCACACGAGCACAACATCA 57.832 45.000 0.00 0.00 0.00 3.07
2099 2321 6.803320 CGAGCACAACATCAAGATTTGTTAAT 59.197 34.615 7.44 0.00 34.42 1.40
2137 2361 4.791069 TCCCCGGGGCCTGACTAC 62.791 72.222 36.68 0.00 34.68 2.73
2148 2372 3.127352 CTGACTACGGGCGCTCCTC 62.127 68.421 7.64 1.25 0.00 3.71
2150 2374 4.444081 ACTACGGGCGCTCCTCCT 62.444 66.667 7.64 0.00 0.00 3.69
2161 2385 1.608717 GCTCCTCCTCATGACACCGT 61.609 60.000 0.00 0.00 0.00 4.83
2168 2392 3.595173 TCCTCATGACACCGTTACAATG 58.405 45.455 0.00 0.00 0.00 2.82
2177 2401 2.882132 GTTACAATGCCGCACCCC 59.118 61.111 0.00 0.00 0.00 4.95
2229 2454 3.121030 CCTGCGTGCCTGTGCTAC 61.121 66.667 0.00 0.00 38.71 3.58
2239 2464 1.678728 GCCTGTGCTACTATGTTGGCA 60.679 52.381 0.00 0.00 38.99 4.92
2441 2675 8.528044 GGTTATGTTTCCTAACCATGGATAAA 57.472 34.615 21.47 8.05 44.95 1.40
2449 2683 7.027874 TCCTAACCATGGATAAAGAGTTGTT 57.972 36.000 21.47 0.00 0.00 2.83
2469 2703 6.352682 TGTTATTTGATTAACGGGATCACG 57.647 37.500 17.58 17.58 35.30 4.35
2478 2712 1.481871 ACGGGATCACGTCATTAGGT 58.518 50.000 19.33 0.00 45.08 3.08
2507 2741 5.449297 TCTAATTGACATGACCCATTCCA 57.551 39.130 0.00 0.00 0.00 3.53
2520 2754 2.887152 CCCATTCCATTAGCTTAGCACC 59.113 50.000 7.07 0.00 0.00 5.01
2526 2760 2.224281 CCATTAGCTTAGCACCCGATCA 60.224 50.000 7.07 0.00 0.00 2.92
2539 2773 4.574828 GCACCCGATCATTTAGTATGTTGT 59.425 41.667 0.00 0.00 0.00 3.32
2594 2828 8.874156 TCCTATGACTATGAGATTATGCAACTT 58.126 33.333 0.00 0.00 0.00 2.66
2600 2834 5.741388 ATGAGATTATGCAACTTCCGTTC 57.259 39.130 0.00 0.00 0.00 3.95
2603 2837 3.689649 AGATTATGCAACTTCCGTTCACC 59.310 43.478 0.00 0.00 0.00 4.02
2631 2865 3.508012 AACACTTTGTGTGCTACCAAACA 59.492 39.130 4.01 0.00 46.79 2.83
2656 2890 6.880484 TCACAACGTAACTGGGTGATTATAT 58.120 36.000 0.00 0.00 33.88 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 330 7.113658 ACTCTTCATTACCACATCGTAGATT 57.886 36.000 0.00 0.00 45.12 2.40
606 792 4.832608 GTGGATGGCGTCGGGGAC 62.833 72.222 0.00 0.00 0.00 4.46
660 846 2.190578 CTGGATCCCGACCTTGGC 59.809 66.667 9.90 0.00 0.00 4.52
671 857 1.250840 AAACCTTTGCCGGCTGGATC 61.251 55.000 30.27 0.00 37.49 3.36
672 858 1.228862 AAACCTTTGCCGGCTGGAT 60.229 52.632 30.27 20.63 37.49 3.41
786 972 2.258591 GCGCGAGAGTGGAGTGAA 59.741 61.111 12.10 0.00 43.14 3.18
791 977 4.742649 AGGAGGCGCGAGAGTGGA 62.743 66.667 12.10 0.00 43.14 4.02
881 1067 2.263895 ACCACTCCCCTATACTGCAA 57.736 50.000 0.00 0.00 0.00 4.08
920 1109 0.689623 CCTCAAAGAGTGTCAGGGCT 59.310 55.000 0.00 0.00 0.00 5.19
935 1124 2.435663 CACCCATGTGCCACCTCA 59.564 61.111 0.00 0.00 35.31 3.86
956 1145 3.148279 GCCGTCATCTCCTCCCGT 61.148 66.667 0.00 0.00 0.00 5.28
1003 1192 0.320247 GCTATCGGAGACCATGCCAG 60.320 60.000 0.00 0.00 42.51 4.85
1048 1237 3.084039 TCAAAGATGTTGCAGTGATCCC 58.916 45.455 0.00 0.00 0.00 3.85
1077 1266 0.109689 CGGTGTCAACGAGAGAGGTC 60.110 60.000 3.57 0.00 0.00 3.85
1078 1267 1.524863 CCGGTGTCAACGAGAGAGGT 61.525 60.000 12.97 0.00 0.00 3.85
1079 1268 1.213013 CCGGTGTCAACGAGAGAGG 59.787 63.158 12.97 0.00 0.00 3.69
1083 1272 4.351938 CCGCCGGTGTCAACGAGA 62.352 66.667 12.97 0.00 0.00 4.04
1138 1327 0.962356 GTGCAGTTGATGTGGGGGAG 60.962 60.000 0.00 0.00 0.00 4.30
1143 1332 0.603707 AGACGGTGCAGTTGATGTGG 60.604 55.000 0.00 0.00 0.00 4.17
1152 1341 1.374758 GAGGTCCAAGACGGTGCAG 60.375 63.158 0.00 0.00 35.57 4.41
1164 1353 3.310860 AATCGCGTGTGGGAGGTCC 62.311 63.158 5.77 0.00 40.74 4.46
1201 1390 4.499696 GCCAGCAACAAACTGAACATTACT 60.500 41.667 0.00 0.00 37.32 2.24
1202 1391 3.735746 GCCAGCAACAAACTGAACATTAC 59.264 43.478 0.00 0.00 37.32 1.89
1203 1392 3.549827 CGCCAGCAACAAACTGAACATTA 60.550 43.478 0.00 0.00 37.32 1.90
1210 1399 1.788308 CAAATCGCCAGCAACAAACTG 59.212 47.619 0.00 0.00 34.82 3.16
1277 1466 6.698380 GGAAAGAACTAGATGTTGTGTCCTA 58.302 40.000 0.00 0.00 46.92 2.94
1279 1468 5.864628 GGAAAGAACTAGATGTTGTGTCC 57.135 43.478 0.00 0.20 45.35 4.02
1316 1508 6.128795 GGAAGAACACATCTCGTTCAAAGTAG 60.129 42.308 5.89 0.00 44.22 2.57
1317 1509 5.694910 GGAAGAACACATCTCGTTCAAAGTA 59.305 40.000 5.89 0.00 44.22 2.24
1318 1510 4.511826 GGAAGAACACATCTCGTTCAAAGT 59.488 41.667 5.89 0.00 44.22 2.66
1319 1511 4.511454 TGGAAGAACACATCTCGTTCAAAG 59.489 41.667 5.89 0.00 44.22 2.77
1334 1537 3.230976 ACCCACTGGAAAATGGAAGAAC 58.769 45.455 0.00 0.00 38.34 3.01
1342 1545 5.071653 ACAAGCATAAAACCCACTGGAAAAT 59.928 36.000 0.00 0.00 34.81 1.82
1343 1546 4.407296 ACAAGCATAAAACCCACTGGAAAA 59.593 37.500 0.00 0.00 34.81 2.29
1347 1550 2.029110 CCACAAGCATAAAACCCACTGG 60.029 50.000 0.00 0.00 37.80 4.00
1371 1574 3.996921 ACCTTGACAGCATCTTCATCT 57.003 42.857 0.00 0.00 0.00 2.90
1418 1621 0.984230 CCCTTTGGCACCTCTACTGA 59.016 55.000 0.00 0.00 0.00 3.41
1433 1636 3.028850 TCGACGATTATCACCTTCCCTT 58.971 45.455 0.00 0.00 0.00 3.95
1455 1658 2.130272 TGCTGGAGTCTATCACGACT 57.870 50.000 0.00 0.00 46.39 4.18
1469 1672 1.820906 CCATCCCGTGACATGCTGG 60.821 63.158 0.00 0.00 0.00 4.85
1471 1674 1.078214 CACCATCCCGTGACATGCT 60.078 57.895 0.00 0.00 35.68 3.79
1473 1676 1.086696 GAACACCATCCCGTGACATG 58.913 55.000 0.00 0.00 37.20 3.21
1479 1682 2.236395 CCTAAGAAGAACACCATCCCGT 59.764 50.000 0.00 0.00 0.00 5.28
1481 1684 2.844348 TCCCTAAGAAGAACACCATCCC 59.156 50.000 0.00 0.00 0.00 3.85
1487 1690 4.602340 TGTGTCTCCCTAAGAAGAACAC 57.398 45.455 0.00 0.00 35.21 3.32
1491 1694 5.148502 AGAACTTGTGTCTCCCTAAGAAGA 58.851 41.667 0.00 0.00 35.21 2.87
1509 1712 6.485984 GCATCATCTGGACATCAAATAGAACT 59.514 38.462 0.00 0.00 0.00 3.01
1535 1738 2.124151 GCTCGCCCCCATCAACAT 60.124 61.111 0.00 0.00 0.00 2.71
1548 1751 1.582424 CTGCTTCTCGTCTCGCTCG 60.582 63.158 0.00 0.00 0.00 5.03
1561 1764 2.291217 GGAAAATCTCCCTCCACTGCTT 60.291 50.000 0.00 0.00 38.44 3.91
1573 1776 2.711542 TCCGGCTTCAAGGAAAATCTC 58.288 47.619 0.00 0.00 32.86 2.75
1599 1802 5.748402 AGCATTGGAGTGATCTTGTAATCA 58.252 37.500 0.00 0.00 33.30 2.57
1602 1805 5.425217 TCCTAGCATTGGAGTGATCTTGTAA 59.575 40.000 0.00 0.00 0.00 2.41
1605 1808 4.412796 TCCTAGCATTGGAGTGATCTTG 57.587 45.455 0.00 0.00 0.00 3.02
1647 1850 1.377987 TGCGGGCAATCAAGGGTAC 60.378 57.895 0.00 0.00 0.00 3.34
1657 1860 2.535485 CTATCAGGGTGTGCGGGCAA 62.535 60.000 0.00 0.00 0.00 4.52
1660 1863 0.251916 TTTCTATCAGGGTGTGCGGG 59.748 55.000 0.00 0.00 0.00 6.13
1665 1868 4.080356 TGCTGCTTATTTCTATCAGGGTGT 60.080 41.667 0.00 0.00 0.00 4.16
1687 1891 5.070446 ACAGGGACACTACATACCATACATG 59.930 44.000 0.00 0.00 0.00 3.21
1697 1911 5.871396 ATTCGATAACAGGGACACTACAT 57.129 39.130 0.00 0.00 0.00 2.29
1698 1912 6.778834 TTATTCGATAACAGGGACACTACA 57.221 37.500 0.00 0.00 0.00 2.74
1699 1913 6.145696 GCATTATTCGATAACAGGGACACTAC 59.854 42.308 0.00 0.00 0.00 2.73
1700 1914 6.220930 GCATTATTCGATAACAGGGACACTA 58.779 40.000 0.00 0.00 0.00 2.74
1701 1915 5.057149 GCATTATTCGATAACAGGGACACT 58.943 41.667 0.00 0.00 0.00 3.55
1702 1916 4.213482 GGCATTATTCGATAACAGGGACAC 59.787 45.833 0.00 0.00 0.00 3.67
1703 1917 4.102524 AGGCATTATTCGATAACAGGGACA 59.897 41.667 0.00 0.00 0.00 4.02
1704 1918 4.642429 AGGCATTATTCGATAACAGGGAC 58.358 43.478 0.00 0.00 0.00 4.46
1705 1919 4.974645 AGGCATTATTCGATAACAGGGA 57.025 40.909 0.00 0.00 0.00 4.20
1706 1920 4.320494 GCAAGGCATTATTCGATAACAGGG 60.320 45.833 0.00 0.00 0.00 4.45
1707 1921 4.611355 CGCAAGGCATTATTCGATAACAGG 60.611 45.833 0.00 0.00 0.00 4.00
1708 1922 4.024893 ACGCAAGGCATTATTCGATAACAG 60.025 41.667 6.59 0.00 46.39 3.16
1711 1925 4.334203 ACAACGCAAGGCATTATTCGATAA 59.666 37.500 6.59 0.00 46.39 1.75
1714 1928 2.080693 ACAACGCAAGGCATTATTCGA 58.919 42.857 6.59 0.00 46.39 3.71
1724 1938 3.062639 CAGTCTGCTAATACAACGCAAGG 59.937 47.826 0.00 0.00 46.39 3.61
1730 1944 7.416154 TGTGTAAACAGTCTGCTAATACAAC 57.584 36.000 0.00 1.80 0.00 3.32
1766 1980 8.847196 TGCTCGAGTAGTATCACAAATATTACT 58.153 33.333 15.13 1.31 32.19 2.24
1778 1992 4.036971 ACATGGAACTGCTCGAGTAGTATC 59.963 45.833 32.22 27.28 40.09 2.24
1785 2000 1.638133 CAGACATGGAACTGCTCGAG 58.362 55.000 8.45 8.45 0.00 4.04
1792 2007 3.498774 AAGAAGTGCAGACATGGAACT 57.501 42.857 0.00 0.00 0.00 3.01
1823 2038 9.958180 TGGATGAAGACACTATTTCTAATTTCA 57.042 29.630 0.00 0.00 0.00 2.69
1844 2063 8.447924 AAAATTCTCTGACTGTCATATGGATG 57.552 34.615 11.45 0.00 0.00 3.51
1845 2064 8.492782 AGAAAATTCTCTGACTGTCATATGGAT 58.507 33.333 11.45 2.30 29.94 3.41
1852 2071 6.484643 CCAGAAAGAAAATTCTCTGACTGTCA 59.515 38.462 10.50 10.50 37.56 3.58
1857 2076 7.301789 GCTTACCAGAAAGAAAATTCTCTGAC 58.698 38.462 11.79 0.00 37.56 3.51
1863 2082 5.851703 GTGTCGCTTACCAGAAAGAAAATTC 59.148 40.000 0.00 0.00 0.00 2.17
1881 2100 1.062587 GCATAGACCATTGTGTGTCGC 59.937 52.381 0.00 0.00 36.61 5.19
1885 2104 2.715046 ACTGGCATAGACCATTGTGTG 58.285 47.619 0.00 0.00 39.54 3.82
1886 2105 3.439857 AACTGGCATAGACCATTGTGT 57.560 42.857 0.00 0.00 39.54 3.72
1889 2108 5.389859 TGAAAAACTGGCATAGACCATTG 57.610 39.130 0.00 0.00 39.54 2.82
1890 2109 5.774690 TCTTGAAAAACTGGCATAGACCATT 59.225 36.000 0.00 0.00 39.54 3.16
1891 2110 5.324409 TCTTGAAAAACTGGCATAGACCAT 58.676 37.500 0.00 0.00 39.54 3.55
1894 2113 7.597386 AGAAATCTTGAAAAACTGGCATAGAC 58.403 34.615 0.00 0.00 0.00 2.59
1895 2114 7.765695 AGAAATCTTGAAAAACTGGCATAGA 57.234 32.000 0.00 0.00 0.00 1.98
1926 2148 2.953020 TCAAACAGCGCAACAAGTTTT 58.047 38.095 11.47 0.00 32.34 2.43
1937 2159 0.366871 CTCGATCGGTTCAAACAGCG 59.633 55.000 16.41 0.00 39.05 5.18
1945 2167 2.422832 AGTGAACTACCTCGATCGGTTC 59.577 50.000 20.44 20.44 38.49 3.62
1946 2168 2.444421 AGTGAACTACCTCGATCGGTT 58.556 47.619 16.41 10.79 38.49 4.44
1947 2169 2.125773 AGTGAACTACCTCGATCGGT 57.874 50.000 16.41 8.79 41.10 4.69
1949 2171 6.530534 ACAAATTTAGTGAACTACCTCGATCG 59.469 38.462 9.36 9.36 0.00 3.69
1950 2172 7.829378 ACAAATTTAGTGAACTACCTCGATC 57.171 36.000 0.00 0.00 0.00 3.69
1951 2173 7.119262 CCAACAAATTTAGTGAACTACCTCGAT 59.881 37.037 0.00 0.00 0.00 3.59
1952 2174 6.425721 CCAACAAATTTAGTGAACTACCTCGA 59.574 38.462 0.00 0.00 0.00 4.04
1958 2180 7.558444 ACAGAACCCAACAAATTTAGTGAACTA 59.442 33.333 0.00 0.00 0.00 2.24
1983 2205 5.038284 GGCTAGTCCACTATGGCAACATAC 61.038 50.000 0.00 0.00 45.85 2.39
1987 2209 1.486726 AGGCTAGTCCACTATGGCAAC 59.513 52.381 0.00 0.00 37.47 4.17
1992 2214 2.158900 CCCAACAGGCTAGTCCACTATG 60.159 54.545 6.07 0.00 37.29 2.23
1993 2215 2.119495 CCCAACAGGCTAGTCCACTAT 58.881 52.381 6.07 0.00 37.29 2.12
2001 2223 2.304761 TCTAACAACCCCAACAGGCTAG 59.695 50.000 0.00 0.00 0.00 3.42
2016 2238 8.756927 TGGCATTGGATTTGATTTATTCTAACA 58.243 29.630 0.00 0.00 0.00 2.41
2017 2239 9.034544 GTGGCATTGGATTTGATTTATTCTAAC 57.965 33.333 0.00 0.00 0.00 2.34
2018 2240 8.203485 GGTGGCATTGGATTTGATTTATTCTAA 58.797 33.333 0.00 0.00 0.00 2.10
2019 2241 7.344093 TGGTGGCATTGGATTTGATTTATTCTA 59.656 33.333 0.00 0.00 0.00 2.10
2020 2242 6.156602 TGGTGGCATTGGATTTGATTTATTCT 59.843 34.615 0.00 0.00 0.00 2.40
2021 2243 6.347696 TGGTGGCATTGGATTTGATTTATTC 58.652 36.000 0.00 0.00 0.00 1.75
2022 2244 6.310764 TGGTGGCATTGGATTTGATTTATT 57.689 33.333 0.00 0.00 0.00 1.40
2023 2245 5.954153 TGGTGGCATTGGATTTGATTTAT 57.046 34.783 0.00 0.00 0.00 1.40
2024 2246 5.954153 ATGGTGGCATTGGATTTGATTTA 57.046 34.783 0.00 0.00 0.00 1.40
2025 2247 4.847990 ATGGTGGCATTGGATTTGATTT 57.152 36.364 0.00 0.00 0.00 2.17
2026 2248 4.225492 TCAATGGTGGCATTGGATTTGATT 59.775 37.500 0.00 0.00 41.50 2.57
2027 2249 3.775866 TCAATGGTGGCATTGGATTTGAT 59.224 39.130 0.00 0.00 41.50 2.57
2028 2250 3.171528 TCAATGGTGGCATTGGATTTGA 58.828 40.909 0.00 0.00 41.50 2.69
2029 2251 3.613494 TCAATGGTGGCATTGGATTTG 57.387 42.857 0.00 0.00 41.50 2.32
2030 2252 4.035112 AGATCAATGGTGGCATTGGATTT 58.965 39.130 0.00 0.00 41.50 2.17
2031 2253 3.649843 AGATCAATGGTGGCATTGGATT 58.350 40.909 0.00 0.00 41.50 3.01
2036 2258 2.172505 TCGGTAGATCAATGGTGGCATT 59.827 45.455 0.00 0.00 0.00 3.56
2038 2260 1.138859 CTCGGTAGATCAATGGTGGCA 59.861 52.381 0.00 0.00 0.00 4.92
2045 2267 2.103263 GCTTGGTCCTCGGTAGATCAAT 59.897 50.000 0.00 0.00 0.00 2.57
2047 2269 1.112113 GCTTGGTCCTCGGTAGATCA 58.888 55.000 0.00 0.00 0.00 2.92
2081 2303 7.872483 GGTGAACCATTAACAAATCTTGATGTT 59.128 33.333 0.00 0.00 38.42 2.71
2085 2307 6.968263 TGGTGAACCATTAACAAATCTTGA 57.032 33.333 0.00 0.00 42.01 3.02
2108 2332 1.492133 CCCGGGGATGTAGCCATGAT 61.492 60.000 14.71 0.00 0.00 2.45
2109 2333 2.146724 CCCGGGGATGTAGCCATGA 61.147 63.158 14.71 0.00 0.00 3.07
2110 2334 2.431683 CCCGGGGATGTAGCCATG 59.568 66.667 14.71 0.00 0.00 3.66
2137 2361 4.598894 CATGAGGAGGAGCGCCCG 62.599 72.222 2.29 0.00 40.87 6.13
2148 2372 2.095853 GCATTGTAACGGTGTCATGAGG 59.904 50.000 0.00 0.00 0.00 3.86
2150 2374 2.080693 GGCATTGTAACGGTGTCATGA 58.919 47.619 0.00 0.00 0.00 3.07
2161 2385 2.748251 CGGGGTGCGGCATTGTAA 60.748 61.111 5.72 0.00 0.00 2.41
2219 2444 1.017387 GCCAACATAGTAGCACAGGC 58.983 55.000 0.00 0.00 41.61 4.85
2239 2464 6.332901 AGGGCATATTTCCTTCAGTAACCTAT 59.667 38.462 0.00 0.00 0.00 2.57
2244 2469 6.043243 CCTCTAGGGCATATTTCCTTCAGTAA 59.957 42.308 0.00 0.00 34.75 2.24
2245 2470 5.544176 CCTCTAGGGCATATTTCCTTCAGTA 59.456 44.000 0.00 0.00 34.75 2.74
2246 2471 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
2247 2472 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
2430 2664 8.877864 TCAAATAACAACTCTTTATCCATGGT 57.122 30.769 12.58 1.59 0.00 3.55
2438 2672 9.504708 TCCCGTTAATCAAATAACAACTCTTTA 57.495 29.630 0.00 0.00 35.89 1.85
2440 2674 7.989416 TCCCGTTAATCAAATAACAACTCTT 57.011 32.000 0.00 0.00 35.89 2.85
2441 2675 7.827236 TGATCCCGTTAATCAAATAACAACTCT 59.173 33.333 0.00 0.00 35.89 3.24
2449 2683 5.662456 TGACGTGATCCCGTTAATCAAATA 58.338 37.500 4.33 0.00 41.98 1.40
2478 2712 6.661777 TGGGTCATGTCAATTAGATCATTCA 58.338 36.000 0.00 0.00 0.00 2.57
2485 2719 5.449297 TGGAATGGGTCATGTCAATTAGA 57.551 39.130 0.00 0.00 0.00 2.10
2486 2720 6.720112 AATGGAATGGGTCATGTCAATTAG 57.280 37.500 0.00 0.00 0.00 1.73
2488 2722 5.069516 GCTAATGGAATGGGTCATGTCAATT 59.930 40.000 0.00 0.00 0.00 2.32
2495 2729 4.141181 TGCTAAGCTAATGGAATGGGTCAT 60.141 41.667 0.00 0.00 0.00 3.06
2507 2741 4.357918 AATGATCGGGTGCTAAGCTAAT 57.642 40.909 0.00 0.00 0.00 1.73
2520 2754 8.559536 AGCAATAACAACATACTAAATGATCGG 58.440 33.333 0.00 0.00 0.00 4.18
2600 2834 0.944386 CACAAAGTGTTCCTCCGGTG 59.056 55.000 0.00 0.00 0.00 4.94
2603 2837 0.307760 GCACACAAAGTGTTCCTCCG 59.692 55.000 0.00 0.00 45.08 4.63
2631 2865 3.695830 ATCACCCAGTTACGTTGTGAT 57.304 42.857 0.00 9.60 40.74 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.