>input_sequence_72641
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--------------------------------------------------------------------ATGCTGGCATGG
TCTCCGATAGCCGCCTCCTTATGGAGACCATCATCAGGGATCACTGCAACATCTTTGAGGGCGTGGACCTCTCTCGTTGA
CACCGGCGGTGCCCATGGTGCCACGGCGGAAGCCATCGCTAAGGCGCTCCCCCACATCAACTGCACCGTCTTGGACCTCC
CACACGCGATTGCGGGGGCACCTGCCATCAGTAATGTTCAGTTTGTTGCTGGCGATTTGTTTGAGTACGTGCCACCAGCA
GACGTTGTTCTACTCAAGGTACACATAGGACACAACATCTAGTTCTTT--CCTTCAGTTATT-ACATCTACT--------
---TTGAACGAGATGTGTTCTTCCATTTTCCAGTGGGTTTTATGCTTGTGGCAAGATGAAGATGCTGTCAAGGTACTACG
ACGGTGCAAAGAAGCAATAATCAGTAGAGGTGCCAAAGGGAAGGTGATAATCGTCGAAGTCGTGATAGACTCCAGCATGT
CACGGGATGGTGTTCTTCTTAGGGAGACACAAGTTCTATTTGATGTCCAGATGATGCATGTTGATGGGGGCGAGCGAGAC
GAGAAGCAGTGGAGGGAGATTTTCCTTGAAGCCGGATTCAGTGATTACAAGATCACTCCAATGCTAGGATTTCGATCCAT
CATTGAAGTGTACCCTTGA-------------------------------------------------------------
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>chr6A_1_TraesCS6A01G391200
TGATTAACGTGTGACCTGAGGCCATTAGTGCTGCCGGCGGCCGCCGCCTCTTGCACTTCTAACTCACGAGGTCGATTAAA
TCAGTGGAGATCCTCAACAAAAGAAGAAGATTAAATCAGGGGGCACCAGCTGCGCGACAGGCAAATCGTCCTACAGATAC
AGCCTGTCAATTCTCTAGTGGTTCAGCTCCAAGGTTAGCACTATCA-----------AAGCCCTCTGAATTCTCGTTTAA
TATGAGTTGAAATTGCACATTCAATTTTAATTATTTTGATGGTGTGATT--TACAATGCTAATTCATTTGTAATTTCCTT
TGATTGTCTAATCTACGATGTGGTAATGAAGAGTAAAACTAG--------------------------------------
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----------------------------------------------------GTTATCTTCTGATGAAATTATTTATATT
TCGATCTTATTGGCAATTGTAAAGGCAAATTTGAATTAATATCAATTTAGCTATGTTTTAGTAGTGTTGACACAAAACAG
TACTATAGTACAGGGGAACC--TTTTTTTTGCGTTGCACGATTTGTTTTTGCCAACTTGGCTTGCCCCCCCCCTATACCT
AAATCCTGGCTCCGCCCCTGGCCATGGCGTACGTCAAGTCTGCCATGCTGAGGGCCGCGGTGGACTTACGCGTCCCCGAC
GCCATCCACCATCGTGGAGGTGTCGCCACCTTGTCCGACATCGCCGCCAAGGTCGGGATCCAGCCGGCAAAGGTTTCCCA
CCTCCATCGGCTCATGCGCGCCCTCACCATCCTCGGCATCTTCTCCGTAGACCAGGGCCCCCACGATGATGCCACCGACA
TGCACTACAAGTTCACTCCACTCTCGCGCCTCCTCGTCGGGGACAGCTCGTGCACCCAGTCTCCCATCGTGCGCGTGCTC
GTGGACCCGCTGTCCTTGACCGCCCTTTGCAGT---ATAGGGGAGTGGTTCACCGACGAGAGAGCGTCAGCCCTGACACT
CTTTGAGGTGGCACATGGGTGCACACGGGAGGAGATGACGGCGAAGAAGGGCACACGTGGCATGTTCAATGCTGGCATGG
TCTCCGATAGCCGCCTCCTTATGGAGACCATCATCAGGGATCACTGCAACATCTTTGAGGGCGTGGACCTCTCTCGTTGA
CACCGGCGGTGCCCATGGTGCCACGGCGGAAGCCATCGCTAAGGCGCTCCCCCACATCAACTGCACCGTCTTGGACCTCC
CACACGCGATTGCGGGGGCACCTGCCATCAGTAATGTTCAGTTTGTTGCTGGCGATTTGTTTGAGTACGTGCCACCAGCA
GACGTTGTTCTACTCAAGGTACACATAGGACACAACATCTAGTTCTTT--CCTTCAGTTATT-ACATCTACT--------
---TTGAACGAGATGTGTTCTTCCATTTTCCAGTGGGTTTTATGCTTGTGGCAAGATGAAGATGCTGTCAAGGTACTACG
ACGGTGCAAAGAAGCAATAATCAGTAGAGGTGCCAAAGGGAAGGTGATAATCGTCGAAGTCGTGATAGACTCCAGCATGT
CACGGGATGGTGTTCTTCTTAGGGAGACACAAGTTCTATTTGATGTCCAGATGATGCATGTTGATGGGGGCGAGCGAGAC
GAGAAGCAGTGGAGGGAGATTTTCCTTGAAGCCGGATTCAGTGATTACAAGATCACTCCAATGCTAGGATTTCGATCCAT
CATTGAAGTGTACCCTTGATTGCCCGCACACCCTGATAGAAATAA-GCAGCAT----------GTATGGTATGTAGTGTC
CCTGTTATCGAATAATGCCTTGCGTTGTATTAGCAGACTGTTTACACAATAAATTTTTCAGTAATATTTGTG-ATACTAC
TCGAGCAGTTCCATGTCTGCACTTCTTATAAAAGTTATGAAATTAG----AAATAGTGTCTTCATCCATATGACAGTCAG
AGAATTTTCTTTCTGGTAAGCGACACACAATGGTCTATGCCAGTTTTTCAAGATTTCTT---GGAAAAAAACTTGTTGCG
CTGTTTGAACCGATCGAGGTAGTTCACTAAATTTGTTGGGTTCTGTATGTTGCCATAGTGGACTAGCCTGTTGGGGTTGT
TAGAATAAATCAAATCCAATGCCACCATTGATCTACCGAGGACCAAGCAATCACACGAGCACAACATCAAGATTTGTTAA
T--GGTTCACCATCATGGCTACATCCCCGGGGCCTGACTACGGGCGCTCCTCCTCATGACACCGTTACAATGCCGCACCC
CGGCCGCCCGGGCACCGACACACGCGT-CGGCTCCCCCTGCGTGCCTGTGCTACTATGTTGGCATAGGTTACTGAAGGAA
ATATGCCCTAGAGGCAATAATAAAGTTATTATT---------TATCATGATAAATGTTTATTATTCATGCTAGAATTGTA
TTAACCGGAAACATAATACATATGTGAATACATAGACAAACAGAGTGTCACTAGTATGCCTCTACTTGACTAGCTCGTTA
ATCAAAGATGGTTATGTTTCCTAACCATGGATAAAGAGTTGTTATTTGATTAACGGGATCACGTCATTAGGTGAATGATC
TAATTGACATGACCCATTCCATTAGCTTAGCACCCGATCATTTAGTATGTTGTTATTGCTTTCTTCATGACTTATACATG
TTCCTATGACTATGAGATTATGCAACTTCCGTTCACCGGAGGAACACTTTGTGTGCTACCAAACATCACAACGTAACTGG
GTGATTATAT
>chr2A_1
TGATTAACGTGTGACCTGAGGCCATTAGCGCTGCCGGCGGCCGCCGCCTCTTGCACTTCTAACTCACGAGGTCGATTAAA
TCAGTGGAGATCCTCAACAAAAGAAGAAGATTAAATCAGGGGGCACTAGCTGCGCGACTGGCAAATTGTCCTACAGATAC
AGCCTGTCAATTCTCTAGTGGTTCAGCTCCAAGGTTAGCACTATCA-----------AAGCCCTCTGAATTCTCGTTTAA
TATGAGTTGAAATTGCACATTCAATTTTAATTATTTTGATGGTGTGATT--TACAATGCTAATTCATTTGTAATTTCCTT
TGATTGTCTGATCTACGATGTGGTAATGAAGAGTAAAACTAG--------------------------------------
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----------------------------------------------------GTTATCTTCTGATGAAATTATTTATATT
TTGATCTTATTGGCAATTGTAAAGGCAAATTTAAATTAATATCAATTTAGCTATGTTTTAGTAGTGTTGACACAAAACAG
TACTATAGTACAGGGGAATC-TTTTTTTTTGCGTTGCACGATTTGTTTTTGCCAACTTGGCTTGG--CCCCCCTATACCT
AAATCCTGGCTCCGCCCCTG------------------------------------------------------------
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>chr2A_1
TGATTAACGTGTGACCTGAGGCCATTAGCGCTGCCGGCGGCCGCCGCCTCTTGCACTTCTAACTCACGAGGTCGATTAAA
TCAGTGGAGATCCTCAACAAAAGAAGAAGATTAAATCAGGGGGCACCAGCTGCGCGACAGGAAAATCGTCCTACAGATAC
AGCATGTCAATTCTCTAGTGGTTCAGCTCCAAGGTTAGCACTATCAAACTGTCTACTAAGCCCTCTGAATTCTCATTTAA
TATGAGTTGAAATTGCACATTCAATTTTAATTATTTTGATGGTGTGATT--TACAATGCTAATTCATTTGTAATTTCCTT
TGATTGTCTGATCTACGATGTGGTAATGAAGAGTAAAACTAG--------------------------------------
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----------------------------------------------------GTTATCTTCTGATGAAATTATTTATATT
TCGATCTTATTGGCAATTGTAAAGGCAAATTTGAATTAATATCAATTTAGCTATGTTTTAGTAGTGTTGACACAAAACAG
TACTATAGTACAGGGGAATC-TTTTTTTT-GCGTTGCACGATTTGTTTTTGCCAACTTGGCTTGG--CCCCCCTATACCT
AAATCCTGACTCCGCCCCTGG-----------------------------------------------------------
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>chr4B_1
TGATTAACATGTGACCTGAGGCCATTAGCGTTGCCGGCGGCCGCCACCTCATGCACTTCTAACTCACAAGGTCGATTAAA
TATTTCTCAAG----AAAAAAAAAGGTCGATTAAATCAGGGGGCACCAGCTGCGCGACAGGCAAATCGTCCTACAGATAC
AACATGTCAATTCTCTAGTGGTTCAGCTCCAAGGTTAGCACCATCAA-CTGTCTACTAAGCCCTCCGAATTCTCGTTTAA
TATGAGTTGAAATTGCACATTAAATTTTAATTATTTTGATGGTGTGATTTATACAATGCTAATTCATTTGTAATTTCCTT
TGATTGTCTGATCTATGATGTGGTAATGAAGAGTAAAACACGGCTAACACTACAAAAATAATTCAATTTTTAAGTATGTT
ATTTAGAGATCTCAGCATAATGAAATTGTTAACAAGGCTAACGCGGAAGTTACCAATCCATGTGCAGTGGGAGATGATTT
GCTTCAAAATTACATGATAATATACATTGATAGAGAATTACCTAGCAACTAAGTTATCTTCCGATGAAAGTATTTTTATT
TCGATCTTATTGGCAATTGTAGAGACAAATTTAAATTAATATAAATTTAGCTATGTTTTAGTAGTGTTGACACAAAACAG
TACTATAGTATAGGGTAATTTTTTTGTTT-GCATTGCACGATTTGTTTTTGCCAACTTGGACTGG--CCCCCCTATACCT
AAATTCTGGCTCCGCCCCTG------------------------------------------------------------
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>chr7B_556
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--------------------GCCATGGCGTACGTCAAGTCTGCGGTGCTCAGGGCCGCGGCGGACCTACGCATCCCCGAC
GCAATTCACCGCCGCGGTGGTGTCGCCACCTTGTCCGACATCGCCACCGAGATCGGCGTCCAGCCGACGAAGCTTCCCCA
CTTCCGTAGGCTCATGCGCGCCCTCACCAGCCTTGGCATCTTCCTCGTCGGCCAAGGCCCGAACGGCGAGGCCACTGATG
TGCACTACAAGCTCACCCCGGTGTCGCGCCTCCTCTTGGAGGACAGCTCGTGCACCCAGTCTCCCATCGTGCGTGTGCTC
GTGGACCCGCTGTCCTTGACCGCTCTCTGCAGC---ATAGGGGAGTGGTTTACTGATGAGAGAGCCTCGGCCCTCACACT
CTTCGAGGTGGCGCATGGGTGCACGCGGGAGGAGATGACGGCGAAGAAGGGCACACGTGGCATGTTCAACGTTGGCATGA
TCTCTGATAGCCGCCTCCTCGTGGAGACCATCATCAAGGATCACTGCAACATCTTTGAGGGCGTTAG-CTCCCTCGTTGA
CGCTGGCGGTGCCCATGGTGCCACGGCGGAAGCCATCGCTAAGGCGTTCCCTCACATCAAGTGCACCGTGCTTGACCTCC
CACACGGGATCGCGGGGGCACCTACCATCGCCAATGTTGAGTTTGTTGCTGGCGATTTGTTTGAGTATGTTCCACCAGCA
GACGTTGTTCTACTCAAGGTACACACATGACACGGCATCTTGTTTTTTTCCCTTCAGTTATT-ACATTACATATATATAT
G--TTGAACGAGGTGTCTTCTTCCTCTTTGCAGTGGGTTTTGTGCTTGTGGCAGGATGAAGATGCTGTCAAGGTACTACG
ACGGTGCAAAGAAGCAATAACCAGTAGAGATGCCAGAGGGAAGGTGATAATCGTTGATGTCGTGATAGACATGGGGATGT
CTCAGGATGATGTCCTTCTTAGGGAGACGCAGGTTTTATTTGATGTCCAGATGATGCGTGTTGACGGGGGTGAGCGAGAC
GAGCAGCAGTGGAGGAAAATTTTCCTTGAAGCCGGATTCAGGGACTATAAGATCACTCCAATGCTAGGATTTCGGTCCAT
CATTGAAGTCTACCCATGAATGTCGGCCCACCCTGATAGAAATAAAGCACGAT----------GTATGGTT---------
--TGCTACCGACTAATGTCTTGCATT-----AGCAGACAGTTTAGACAATAAAGTTTTCCGTAATATTTGTCAATACTAT
TCGCACCGTTCCATCTCTGTGTCTCTTATAAA-GTTCGGAAATAAAATTAAAATAGTGTCTTTGTCCATAAGAAAATCAG
ATAATTTTCTTTCTGGTAAACGATGCAATCTGCCATCTGTGCTAGTTTCCGGGGTTTTGTTGGGAAATAAACTTGTTGGG
CTGTTTCGGC----CGAGGCAGTTCACTAAATTTGTTGGGTTCTTTTTATTGTAGTAGTGGAGTAGCCTGTTGGAGT---
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>chr7D_556
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--------------------GCCATGGCGTACGTCAAGTCTGCGGCGCTCAGGGCAGCCGCGGACCTACGCATCCCCGAC
GCAATTCACCGCTGCGGTGGTGCCGCCACCTTGTCCGACATCGCCACTGAGATCGGCGTCCAGCCGACGAAGGTTTCCCA
CCTCCGTAGGCTCATGCGTGCCCTCACCATCCTTGGCATCTTCCTCGTCGGCCAAGGCCCCAACGGTGAGGCCACTGATG
TGCACTACAAGCTCACCTCGGTCTCGCGCCTCCTCTTGGAGGGCAGCTCATGTACCCAGTCTCCCATCGTGCGCGTGCTC
GTGGACCCGCTGTCCTTGACCGCTCTCTGCAGC---ATAGGGGAGTGGTTTACTGATGAGAGAGCCTCGGCCCTCACACT
CTTCGAGGTGGCGCATGGGTGCACGCGGGAGGAGATGACGGCGAAGAAGGGCACTCGTGGCGTCTTCAATGTTGGCATGA
TCTCCGATAGCCACCTCCTCATGGAGACCATCATCAAGGATCACCGTAACATCTTTGAGGGCGTGAG-CTCCCTCGTTGA
CGCTGGCGGTGCCCATGGTGCCACGGCGGAAGCCATCGCTAAGGCTTTCCCTCACATCAAGTGCACCGTGCTTGACCTCC
CACATGCAATCGCGGGGGCACCTGCCATCGCCAATGTTGAGTTTGTTGCTGGCGATTTGTTTGAGTATGTGCCACCAGTA
GACGTTGTTCTACTCAAGGTACACACATGACACGGCATCTTGTTTTTT--CCTTCGATTTTTTACGTTACATATATATAT
GTGTTGAACGAGACATCTTCTTCCTCTTTGCAGTGGGTTTTGTGCTTGTGGCAGGATGAAGATGCTGTCAAGGTACTACG
ACGATGCAAAGAAGCAATAACCAGTAGAGGTGCCGTAGGGAAGGTGATAATCGTCGATGTCGTGATAGACTTCGGGATGT
CGCAGGATGATGTCCTTCTTAGGGAGACACAGGTTCTATTTGATGTCCAAATGATGCGTGTTGACGGGGGTGAGCGAGAC
GAGCAGCAGTGGAGGAAGATTTTCTTTGAAGCCGGATTCAGGGACTATAAGATCACTCCAATGCTAGGATTTCGATCCAT
AATTGAAGTCTACCCTTGAATG-CCGCCCACCCTGATAGAAATAAAGCAGGATTCATGGTTTGGTATGGTT---------
--TGCTACAGAATAATGTCTTGCATT-----AGCAGACAATTTAGACAATAAAGTTTTCCATAATATTTGTCGTCACTAT
TCGCACGGTTCCATGTCCGTGTTTCTTATAAA-GTTAGGAAATCAG----ACATAGTGCGTTTGTTCATAAGACAATCAG
ATAATATTCTTTCTGGTAAACGATGCAATCTGCCTTCTGTGCTAGTTTCCGGGGTTTTGTTGGGAAATAAACTTGTTGGG
CTGGTTCGGC----CGAGTCAGTTCACTAAATTTGTTGG-TTCTTTTTATTGCAGTAGTGGAATATCCTGTTGG------
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>chr6D_556
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--------------------GCCATGGCGTACCTCAAGTCCGCC-------GGGCTGCCGCGGACCTACGCATCCCCGAC
GCCATCCACCATTGTGGAGGTGCCGCCACCTTGTCCGACATCGCCACCAAGGTCGGTGTCCAGCCGGCAAAGGTTTCCCA
CCTCCATCGGCTCATGCGCGCCCTCACCATCCTTGGCATCTTCTCCGTCGACCAGGGCCCCCACGATGATGCCACCGACA
TGCACTACAACCTCACCCCACTCTCGCGCCTCCTCGTCGGGGACAGCTCGTGCACCCAGTCTCTCATCATGCGCATGCTC
GTGGACCCGCTGTCCTTGACCGCCCTCTGCAGTATAATAGGGGAGTGGTTCACTGACAAGAGAGCGTCGACCCTGACACT
TTTCGAGGTGGCACATGGGTGCACGCGGGAGGAGATGAAGGCGAAGAAGGGCACACGTGGCATGTTCAATGATGGCATGG
TCTCCGATAGCTGCCTCCTTATGGAGACCGTCATCAAGGATCACCGCAATATCTTTGAGG--------------------
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>chr7D_2027
AATAA---------------------------------------------------------------------------
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-------------ATCCGAGGCCACCGTCGATCTACCGAGGACCAAGCAATCACACGAGCACGACACCGAGATTTGTTAA
CCAGGTTCACCTATATGACTACATCCCCGGGGCCTGACTATGGGCGCTCCTTCCCATGACACCGCTACAATACCGCACCC
GGTCGCCCTGGACGCCGGCACATGCCTCCGGCTTCCCCTGCGTTCCGGTGCTATTATGTTGGCTTAGG----TGAAGGAA
ATATGCCCTAGAGGCAATAATAAAGTATTATTTATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTA
TTAACCGGAAACATAATACATGTGTGAATACATAGACAAACAGAGTGTCACTAGTATGCCTCTACTTGACTAGCTCGTTA
ATCAAAGATGGTTATGTTTCCTAGCCATAGACAT-GAGTTGTCATTTGATTAACGGGATCACCTCATTAGGAGAATGACG
TGATTGACTTGACCCATTCCGTTAGCTTAGCACTCGATCGTTTAGTATGTTGCTATTGCTTTCTTCATGACTTATACATG
TTCCTATGACTATGAGATTATGCAACTCCCGTTTACTGGAGGAACACTTTGTGTGCTACCAAACGTCACAACGTAACTGG
GTGATTATA-
>SNPs
----------------------------S---------------------------------------------------
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---------S----------------------------------------------------------------------
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------------------S---------------------------------------------SSS-------------
--------------------------------------------S----S----------S----S-----S--------
---------------------------------------------S----------SS----------------------
---------------------------------S--------------S-------------------------------
-----------S----S---------------------------------------------------------------
--------------------------S--------------------------S--------------S-----------
---S--------------------S----------------------------------------------S--------
------------------------------------S----------------------------SSS---S--------
-S-S------------------------------------------S----S--------S--------SS-S-------
----------S------------------SSS------S----------------------------S------------
-------------------------S-S-----SS-----S---S----------------------SSSS---------
----------------S-------SS---S-----------S-----------S--------------------------
--------------------S--------------S---------------------S-------------S-S-S----
-S-S-----S---S-----------------S-------------------------S------S-----S---------
---S-----------S-------------------------S--S--S--------------------------------
---------S---------S--S----S----------------------S-------------------SSSSSSSSSS
SS--S--S---------S-----S--SSSSS-------S-----S--------S-----S-----------S-------S
---SS-S------------SSS----------S----S-----S------------------SS------S----S----
-S-----------------S---SS--SSS--SSS-S--SSSSSS----SS-SS--S-S--------S----------S-
------SSS-SSSS-----S------------------------S-S-S----SS-------S-----------S--SSS
SSSSSSSSSSSSS----S-S------S-S---------------------------------S---S-S-----------
S----------SSS---S----------------------S----------S-S----------S------S--------
S-S-SS--S--S-S---S----S--S-------S---------S--S------S---------S----SSSS--------
--------------------------SS-SS-------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------S----S--S-SS-------S-------------------S--------S------SS
-S------S-----------S------------S-----S------------S---------------------------
---------------------------S-----S--S---------------------------S---------------
---------S
>forward_929
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-----------------------------TCCTCGGCATCTTCTCCGTA-------------------------------
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>reverse_1863
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----------------------CCCGCACACCCTGATAGAAA--------------------------------------
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