Multiple sequence alignment - TraesCS6A01G386000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G386000 chr6A 100.000 3191 0 0 1 3191 603205985 603209175 0.000000e+00 5893.0
1 TraesCS6A01G386000 chr6A 94.375 160 6 3 1103 1261 14625629 14625786 3.180000e-60 243.0
2 TraesCS6A01G386000 chr6A 95.000 120 6 0 2747 2866 201104665 201104784 4.200000e-44 189.0
3 TraesCS6A01G386000 chr6A 95.000 40 2 0 3152 3191 77497673 77497712 2.660000e-06 63.9
4 TraesCS6A01G386000 chr6D 90.612 948 60 12 1774 2701 456499892 456500830 0.000000e+00 1230.0
5 TraesCS6A01G386000 chr6D 88.376 585 49 12 853 1432 456499076 456499646 0.000000e+00 686.0
6 TraesCS6A01G386000 chr6D 94.375 160 6 3 1103 1261 14011395 14011552 3.180000e-60 243.0
7 TraesCS6A01G386000 chr6D 83.012 259 25 13 336 584 456498520 456498769 1.930000e-52 217.0
8 TraesCS6A01G386000 chr6D 79.565 230 25 10 2984 3191 456500883 456501112 9.230000e-31 145.0
9 TraesCS6A01G386000 chr6D 98.039 51 1 0 2903 2953 456500828 456500878 4.380000e-14 89.8
10 TraesCS6A01G386000 chr6B 84.315 1154 96 44 314 1432 694166553 694167656 0.000000e+00 1050.0
11 TraesCS6A01G386000 chr6B 92.593 378 22 4 1895 2269 694168105 694168479 3.620000e-149 538.0
12 TraesCS6A01G386000 chr6B 90.661 257 15 6 2222 2475 694168476 694168726 1.830000e-87 333.0
13 TraesCS6A01G386000 chr6B 85.401 274 33 3 1 270 694166274 694166544 8.720000e-71 278.0
14 TraesCS6A01G386000 chr6B 93.711 159 7 3 1103 1260 25594526 25594682 5.320000e-58 235.0
15 TraesCS6A01G386000 chr6B 74.380 605 83 46 1 584 585914034 585914587 3.250000e-45 193.0
16 TraesCS6A01G386000 chr6B 91.667 108 9 0 1931 2038 25596384 25596491 1.980000e-32 150.0
17 TraesCS6A01G386000 chr2B 85.935 583 49 15 1002 1578 64870491 64871046 2.740000e-165 592.0
18 TraesCS6A01G386000 chr1D 94.000 150 8 1 1113 1261 405132717 405132568 3.200000e-55 226.0
19 TraesCS6A01G386000 chr7A 95.000 120 6 0 2747 2866 97678475 97678594 4.200000e-44 189.0
20 TraesCS6A01G386000 chr7A 93.651 126 8 0 2747 2872 144257727 144257602 4.200000e-44 189.0
21 TraesCS6A01G386000 chr7A 93.651 126 8 0 2747 2872 400171993 400171868 4.200000e-44 189.0
22 TraesCS6A01G386000 chr7A 77.209 215 25 11 1 196 658285480 658285689 1.570000e-18 104.0
23 TraesCS6A01G386000 chr7A 76.744 215 26 11 1 196 576771344 576771135 7.280000e-17 99.0
24 TraesCS6A01G386000 chr5A 93.651 126 8 0 2747 2872 263285859 263285734 4.200000e-44 189.0
25 TraesCS6A01G386000 chr5A 93.651 126 8 0 2747 2872 382909757 382909632 4.200000e-44 189.0
26 TraesCS6A01G386000 chr3A 95.000 120 6 0 2747 2866 51187120 51187239 4.200000e-44 189.0
27 TraesCS6A01G386000 chr3A 93.651 126 8 0 2747 2872 313598737 313598612 4.200000e-44 189.0
28 TraesCS6A01G386000 chr1A 95.000 120 6 0 2747 2866 304868892 304869011 4.200000e-44 189.0
29 TraesCS6A01G386000 chr1A 95.122 41 2 0 3151 3191 4848607 4848567 7.390000e-07 65.8
30 TraesCS6A01G386000 chrUn 76.692 266 39 14 330 584 367151286 367151539 3.340000e-25 126.0
31 TraesCS6A01G386000 chrUn 76.692 266 39 14 330 584 396107906 396108159 3.340000e-25 126.0
32 TraesCS6A01G386000 chrUn 76.692 266 39 14 330 584 396190008 396190261 3.340000e-25 126.0
33 TraesCS6A01G386000 chr2A 77.209 215 25 11 1 196 735382258 735382467 1.570000e-18 104.0
34 TraesCS6A01G386000 chr2A 95.122 41 2 0 3151 3191 174343453 174343493 7.390000e-07 65.8
35 TraesCS6A01G386000 chr2A 91.111 45 4 0 3147 3191 174341811 174341855 9.560000e-06 62.1
36 TraesCS6A01G386000 chr2A 94.872 39 2 0 3153 3191 364692309 364692347 9.560000e-06 62.1
37 TraesCS6A01G386000 chr1B 75.845 207 31 11 1 196 684684307 684684505 1.580000e-13 87.9
38 TraesCS6A01G386000 chr1B 92.500 40 3 0 3152 3191 560948037 560948076 1.240000e-04 58.4
39 TraesCS6A01G386000 chr4A 97.222 36 1 0 3156 3191 346795981 346795946 9.560000e-06 62.1
40 TraesCS6A01G386000 chr3D 97.222 36 1 0 3156 3191 442523755 442523790 9.560000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G386000 chr6A 603205985 603209175 3190 False 5893.00 5893 100.0000 1 3191 1 chr6A.!!$F4 3190
1 TraesCS6A01G386000 chr6D 456498520 456501112 2592 False 473.56 1230 87.9208 336 3191 5 chr6D.!!$F2 2855
2 TraesCS6A01G386000 chr6B 694166274 694168726 2452 False 549.75 1050 88.2425 1 2475 4 chr6B.!!$F3 2474
3 TraesCS6A01G386000 chr2B 64870491 64871046 555 False 592.00 592 85.9350 1002 1578 1 chr2B.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 126 0.031043 TATACGCATCGTTCACCGGG 59.969 55.0 6.32 0.0 41.54 5.73 F
456 471 0.036671 AAACGAACGGGGGATCAGTC 60.037 55.0 0.00 0.0 0.00 3.51 F
483 498 0.537143 ACGCATCAAGCAACCCAAGA 60.537 50.0 0.00 0.0 46.13 3.02 F
643 667 0.739112 CTGCGGTTCTCTCTTCCTGC 60.739 60.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1495 0.924090 CGATTCTAGGCAACAGCGAC 59.076 55.000 0.0 0.0 41.41 5.19 R
1593 1720 1.140312 AGAGTTGGGTCTTGCAGGAA 58.860 50.000 0.0 0.0 0.00 3.36 R
1595 1722 1.625818 ACTAGAGTTGGGTCTTGCAGG 59.374 52.381 0.0 0.0 0.00 4.85 R
2519 2730 2.287915 GGACCTGCACAGCGTAAATATG 59.712 50.000 0.0 0.0 0.00 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.536724 CCTAACCAGCCCCAAATTGC 59.463 55.000 0.00 0.00 0.00 3.56
46 48 1.057847 GCGAATTCAGTCACGAGAACG 59.942 52.381 6.22 0.00 45.75 3.95
67 69 1.268335 GCGTCAACCGTGAACACAAAT 60.268 47.619 5.80 0.00 39.32 2.32
70 72 2.285756 GTCAACCGTGAACACAAATCGA 59.714 45.455 5.80 0.00 34.87 3.59
79 81 6.077197 CGTGAACACAAATCGATACACATTT 58.923 36.000 0.00 0.00 0.00 2.32
87 89 6.429692 ACAAATCGATACACATTTCCAGTTCA 59.570 34.615 0.00 0.00 0.00 3.18
88 90 7.121168 ACAAATCGATACACATTTCCAGTTCAT 59.879 33.333 0.00 0.00 0.00 2.57
89 91 8.611757 CAAATCGATACACATTTCCAGTTCATA 58.388 33.333 0.00 0.00 0.00 2.15
103 108 8.660295 TTCCAGTTCATAGTACCTTCTTCTTA 57.340 34.615 0.00 0.00 0.00 2.10
106 111 9.968870 CCAGTTCATAGTACCTTCTTCTTATAC 57.031 37.037 0.00 0.00 0.00 1.47
109 114 7.812690 TCATAGTACCTTCTTCTTATACGCA 57.187 36.000 0.00 0.00 0.00 5.24
121 126 0.031043 TATACGCATCGTTCACCGGG 59.969 55.000 6.32 0.00 41.54 5.73
130 135 0.738412 CGTTCACCGGGGACATGTAC 60.738 60.000 5.46 0.00 0.00 2.90
162 167 2.047274 GTACCCTCGCTGCTGCAA 60.047 61.111 16.29 0.00 39.64 4.08
166 171 2.357881 CCTCGCTGCTGCAACTCA 60.358 61.111 16.29 0.00 39.64 3.41
172 177 0.450983 GCTGCTGCAACTCATCCTTC 59.549 55.000 11.11 0.00 39.41 3.46
175 180 1.986575 GCTGCAACTCATCCTTCGCC 61.987 60.000 0.00 0.00 0.00 5.54
177 182 0.250684 TGCAACTCATCCTTCGCCAA 60.251 50.000 0.00 0.00 0.00 4.52
182 187 2.457598 ACTCATCCTTCGCCAACTCTA 58.542 47.619 0.00 0.00 0.00 2.43
189 194 4.945246 TCCTTCGCCAACTCTATATGAAC 58.055 43.478 0.00 0.00 0.00 3.18
190 195 3.736252 CCTTCGCCAACTCTATATGAACG 59.264 47.826 0.00 0.00 0.00 3.95
191 196 4.499188 CCTTCGCCAACTCTATATGAACGA 60.499 45.833 0.00 0.00 0.00 3.85
211 216 3.255642 CGAAACACATCAAAAGATGGGGT 59.744 43.478 11.91 2.53 40.14 4.95
212 217 4.457603 CGAAACACATCAAAAGATGGGGTA 59.542 41.667 11.91 0.00 40.14 3.69
217 222 4.641989 CACATCAAAAGATGGGGTAAGAGG 59.358 45.833 9.93 0.00 36.91 3.69
219 224 5.491078 ACATCAAAAGATGGGGTAAGAGGTA 59.509 40.000 9.93 0.00 36.91 3.08
220 225 5.431179 TCAAAAGATGGGGTAAGAGGTAC 57.569 43.478 0.00 0.00 0.00 3.34
241 246 3.269178 CTCTTCTCACTTTGCTGATCCC 58.731 50.000 0.00 0.00 0.00 3.85
247 252 4.015084 CTCACTTTGCTGATCCCATTCTT 58.985 43.478 0.00 0.00 0.00 2.52
249 254 5.188434 TCACTTTGCTGATCCCATTCTTAG 58.812 41.667 0.00 0.00 0.00 2.18
259 264 3.955471 TCCCATTCTTAGGCTGTTCTTG 58.045 45.455 0.00 0.00 0.00 3.02
270 275 5.652994 AGGCTGTTCTTGAGACTTACTAG 57.347 43.478 0.00 0.00 0.00 2.57
271 276 5.081032 AGGCTGTTCTTGAGACTTACTAGT 58.919 41.667 0.00 0.00 37.31 2.57
272 277 6.246919 AGGCTGTTCTTGAGACTTACTAGTA 58.753 40.000 0.00 0.00 33.84 1.82
273 278 6.151480 AGGCTGTTCTTGAGACTTACTAGTAC 59.849 42.308 0.91 0.00 33.84 2.73
274 279 6.151480 GGCTGTTCTTGAGACTTACTAGTACT 59.849 42.308 0.91 0.00 33.84 2.73
276 281 8.728833 GCTGTTCTTGAGACTTACTAGTACTAA 58.271 37.037 0.91 0.00 33.84 2.24
281 286 9.565090 TCTTGAGACTTACTAGTACTAAACACA 57.435 33.333 0.91 0.00 33.84 3.72
282 287 9.828852 CTTGAGACTTACTAGTACTAAACACAG 57.171 37.037 0.91 0.00 33.84 3.66
283 288 8.915057 TGAGACTTACTAGTACTAAACACAGT 57.085 34.615 0.91 0.57 33.84 3.55
304 309 6.214191 AGTACCACACTGAATCACTGATAG 57.786 41.667 0.00 0.00 35.62 2.08
305 310 4.478206 ACCACACTGAATCACTGATAGG 57.522 45.455 0.00 0.00 0.00 2.57
306 311 3.840666 ACCACACTGAATCACTGATAGGT 59.159 43.478 0.00 0.48 0.00 3.08
307 312 4.186926 CCACACTGAATCACTGATAGGTG 58.813 47.826 13.10 13.10 38.44 4.00
308 313 3.620374 CACACTGAATCACTGATAGGTGC 59.380 47.826 13.98 0.00 37.16 5.01
309 314 3.261643 ACACTGAATCACTGATAGGTGCA 59.738 43.478 13.98 0.00 37.16 4.57
310 315 3.869832 CACTGAATCACTGATAGGTGCAG 59.130 47.826 0.00 0.00 37.16 4.41
311 316 2.871022 CTGAATCACTGATAGGTGCAGC 59.129 50.000 8.11 8.11 36.86 5.25
312 317 2.236893 TGAATCACTGATAGGTGCAGCA 59.763 45.455 19.63 4.52 36.86 4.41
318 323 4.056740 CACTGATAGGTGCAGCAGATTAG 58.943 47.826 19.63 17.51 36.86 1.73
324 329 1.131883 GGTGCAGCAGATTAGCAAGTG 59.868 52.381 11.86 0.00 40.35 3.16
331 336 5.093457 CAGCAGATTAGCAAGTGTTGATTG 58.907 41.667 0.00 0.00 36.85 2.67
401 406 3.964875 GTGGCCACCAGCACAACG 61.965 66.667 26.31 0.00 46.50 4.10
444 459 1.529438 TGCCGTCATCAAGAAACGAAC 59.471 47.619 9.14 3.52 38.65 3.95
447 462 1.126113 CGTCATCAAGAAACGAACGGG 59.874 52.381 0.00 0.00 38.65 5.28
452 467 1.084289 CAAGAAACGAACGGGGGATC 58.916 55.000 0.00 0.00 0.00 3.36
456 471 0.036671 AAACGAACGGGGGATCAGTC 60.037 55.000 0.00 0.00 0.00 3.51
457 472 1.896122 AACGAACGGGGGATCAGTCC 61.896 60.000 0.00 0.00 44.29 3.85
479 494 1.264288 GCTATACGCATCAAGCAACCC 59.736 52.381 0.00 0.00 46.13 4.11
483 498 0.537143 ACGCATCAAGCAACCCAAGA 60.537 50.000 0.00 0.00 46.13 3.02
510 525 4.111916 CCGAGAGCAGATTCTCTTCTTTC 58.888 47.826 2.03 0.00 43.05 2.62
552 567 1.229209 AGAGCTTCTCCGTGGGGAA 60.229 57.895 0.45 0.45 43.27 3.97
572 587 2.762043 GGAGAGGAGCTTCCGCCT 60.762 66.667 0.00 0.00 44.61 5.52
618 639 3.910490 AGCCGAGCCGAGCTGATC 61.910 66.667 2.98 0.00 39.88 2.92
619 640 3.910490 GCCGAGCCGAGCTGATCT 61.910 66.667 2.98 0.00 39.88 2.75
620 641 2.334653 CCGAGCCGAGCTGATCTC 59.665 66.667 2.98 0.00 39.88 2.75
621 642 2.192861 CCGAGCCGAGCTGATCTCT 61.193 63.158 2.98 0.00 39.88 3.10
622 643 1.282570 CGAGCCGAGCTGATCTCTC 59.717 63.158 2.98 0.00 39.88 3.20
626 647 4.612757 CGAGCTGATCTCTCGCTG 57.387 61.111 19.46 1.59 45.32 5.18
628 649 1.658102 GAGCTGATCTCTCGCTGCG 60.658 63.158 17.25 17.25 38.78 5.18
629 650 2.657944 GCTGATCTCTCGCTGCGG 60.658 66.667 23.03 12.92 0.00 5.69
643 667 0.739112 CTGCGGTTCTCTCTTCCTGC 60.739 60.000 0.00 0.00 0.00 4.85
702 753 1.078214 CGCTGGAGCAAGATTCCCA 60.078 57.895 0.00 0.00 42.21 4.37
711 762 2.507471 AGCAAGATTCCCAAGTAGGAGG 59.493 50.000 0.00 0.00 41.22 4.30
712 763 2.924421 CAAGATTCCCAAGTAGGAGGC 58.076 52.381 0.00 0.00 41.22 4.70
716 772 3.593780 AGATTCCCAAGTAGGAGGCTTTT 59.406 43.478 0.00 0.00 41.22 2.27
748 804 4.969196 ACTCTGCGTGCCCGTGTG 62.969 66.667 0.00 0.00 36.15 3.82
763 819 4.856801 GTGGGTGGGCATCGCGAT 62.857 66.667 17.62 17.62 0.00 4.58
838 902 1.276421 CAAACAGGTCCACGGAGAGAT 59.724 52.381 0.00 0.00 0.00 2.75
839 903 0.898320 AACAGGTCCACGGAGAGATG 59.102 55.000 0.00 0.00 0.00 2.90
840 904 1.142748 CAGGTCCACGGAGAGATGC 59.857 63.158 0.00 0.00 0.00 3.91
951 1021 2.243736 TCTCTTCTTCCTCCTCTCCTCC 59.756 54.545 0.00 0.00 0.00 4.30
1072 1142 4.092821 CGCTCCTTCTCGTCTAGATAGATG 59.907 50.000 8.19 9.89 40.00 2.90
1078 1148 6.538742 CCTTCTCGTCTAGATAGATGGATCTC 59.461 46.154 22.83 0.00 39.30 2.75
1080 1150 5.419471 TCTCGTCTAGATAGATGGATCTCGA 59.581 44.000 8.79 0.00 39.30 4.04
1107 1180 3.128589 TGACTGTTCCTTTGCTGTTGTTC 59.871 43.478 0.00 0.00 0.00 3.18
1263 1340 2.726691 CGCAAGTGTAAGTCCCGCG 61.727 63.158 0.00 0.00 34.89 6.46
1291 1371 1.700186 CCCCTTCCCCTATCTTAGCAC 59.300 57.143 0.00 0.00 0.00 4.40
1318 1399 2.799371 GTCCGTCGACCTAGCTGG 59.201 66.667 10.58 4.16 42.93 4.85
1345 1432 3.437049 GGTAGATGTGTTGCTTGGTTCTC 59.563 47.826 0.00 0.00 0.00 2.87
1347 1434 1.873591 GATGTGTTGCTTGGTTCTCGT 59.126 47.619 0.00 0.00 0.00 4.18
1348 1435 2.605837 TGTGTTGCTTGGTTCTCGTA 57.394 45.000 0.00 0.00 0.00 3.43
1349 1436 3.120321 TGTGTTGCTTGGTTCTCGTAT 57.880 42.857 0.00 0.00 0.00 3.06
1350 1437 2.805671 TGTGTTGCTTGGTTCTCGTATG 59.194 45.455 0.00 0.00 0.00 2.39
1351 1438 2.806244 GTGTTGCTTGGTTCTCGTATGT 59.194 45.455 0.00 0.00 0.00 2.29
1352 1439 2.805671 TGTTGCTTGGTTCTCGTATGTG 59.194 45.455 0.00 0.00 0.00 3.21
1353 1440 1.438651 TGCTTGGTTCTCGTATGTGC 58.561 50.000 0.00 0.00 0.00 4.57
1354 1441 1.001974 TGCTTGGTTCTCGTATGTGCT 59.998 47.619 0.00 0.00 0.00 4.40
1388 1476 2.159572 CCGTGATTGCTTAGGTTTTCGG 60.160 50.000 0.00 0.00 0.00 4.30
1397 1485 1.600023 TAGGTTTTCGGTGCTGTTGG 58.400 50.000 0.00 0.00 0.00 3.77
1420 1508 4.077184 CCCCGTCGCTGTTGCCTA 62.077 66.667 0.00 0.00 35.36 3.93
1457 1545 2.910479 TCTGTGGCTCGACGTGGT 60.910 61.111 0.00 0.00 0.00 4.16
1484 1572 2.854522 GGCTTGATGTGCCGTAGTT 58.145 52.632 0.00 0.00 41.03 2.24
1493 1581 4.634004 TGATGTGCCGTAGTTTTTATCTGG 59.366 41.667 0.00 0.00 0.00 3.86
1494 1582 4.010667 TGTGCCGTAGTTTTTATCTGGT 57.989 40.909 0.00 0.00 0.00 4.00
1495 1583 4.391155 TGTGCCGTAGTTTTTATCTGGTT 58.609 39.130 0.00 0.00 0.00 3.67
1496 1584 4.453136 TGTGCCGTAGTTTTTATCTGGTTC 59.547 41.667 0.00 0.00 0.00 3.62
1498 1586 5.870978 GTGCCGTAGTTTTTATCTGGTTCTA 59.129 40.000 0.00 0.00 0.00 2.10
1499 1587 6.369615 GTGCCGTAGTTTTTATCTGGTTCTAA 59.630 38.462 0.00 0.00 0.00 2.10
1500 1588 7.065443 GTGCCGTAGTTTTTATCTGGTTCTAAT 59.935 37.037 0.00 0.00 0.00 1.73
1526 1614 9.554395 TTTGTGATGAGTAGTTCTTGTTTGATA 57.446 29.630 0.00 0.00 0.00 2.15
1527 1615 8.534333 TGTGATGAGTAGTTCTTGTTTGATAC 57.466 34.615 0.00 0.00 0.00 2.24
1573 1700 4.579340 AGCATGATAGTTTGAAGATGCTGG 59.421 41.667 0.00 0.00 43.68 4.85
1584 1711 3.519107 TGAAGATGCTGGGAATGACTGTA 59.481 43.478 0.00 0.00 0.00 2.74
1588 1715 5.324409 AGATGCTGGGAATGACTGTAAAAA 58.676 37.500 0.00 0.00 0.00 1.94
1589 1716 5.416952 AGATGCTGGGAATGACTGTAAAAAG 59.583 40.000 0.00 0.00 0.00 2.27
1593 1720 5.185828 GCTGGGAATGACTGTAAAAAGGAAT 59.814 40.000 0.00 0.00 0.00 3.01
1595 1722 7.227049 TGGGAATGACTGTAAAAAGGAATTC 57.773 36.000 0.00 0.00 0.00 2.17
1596 1723 6.210584 TGGGAATGACTGTAAAAAGGAATTCC 59.789 38.462 17.31 17.31 39.84 3.01
1606 1733 3.987594 AGGAATTCCTGCAAGACCC 57.012 52.632 26.52 0.00 46.55 4.46
1608 1735 1.428912 AGGAATTCCTGCAAGACCCAA 59.571 47.619 26.52 0.00 46.55 4.12
1609 1736 1.546029 GGAATTCCTGCAAGACCCAAC 59.454 52.381 17.73 0.00 34.07 3.77
1611 1738 2.206576 ATTCCTGCAAGACCCAACTC 57.793 50.000 0.00 0.00 34.07 3.01
1612 1739 1.140312 TTCCTGCAAGACCCAACTCT 58.860 50.000 0.00 0.00 34.07 3.24
1613 1740 2.024176 TCCTGCAAGACCCAACTCTA 57.976 50.000 0.00 0.00 34.07 2.43
1614 1741 1.902508 TCCTGCAAGACCCAACTCTAG 59.097 52.381 0.00 0.00 34.07 2.43
1615 1742 1.625818 CCTGCAAGACCCAACTCTAGT 59.374 52.381 0.00 0.00 34.07 2.57
1616 1743 2.039084 CCTGCAAGACCCAACTCTAGTT 59.961 50.000 0.00 0.00 35.26 2.24
1617 1744 3.260884 CCTGCAAGACCCAACTCTAGTTA 59.739 47.826 0.00 0.00 33.53 2.24
1618 1745 4.080863 CCTGCAAGACCCAACTCTAGTTAT 60.081 45.833 0.00 0.00 33.53 1.89
1619 1746 4.832248 TGCAAGACCCAACTCTAGTTATG 58.168 43.478 0.00 0.00 36.32 1.90
1620 1747 4.530553 TGCAAGACCCAACTCTAGTTATGA 59.469 41.667 0.00 0.00 36.32 2.15
1621 1748 5.012664 TGCAAGACCCAACTCTAGTTATGAA 59.987 40.000 0.00 0.00 36.32 2.57
1622 1749 6.116126 GCAAGACCCAACTCTAGTTATGAAT 58.884 40.000 0.00 0.00 36.32 2.57
1623 1750 6.599638 GCAAGACCCAACTCTAGTTATGAATT 59.400 38.462 0.00 0.00 36.32 2.17
1624 1751 7.414540 GCAAGACCCAACTCTAGTTATGAATTG 60.415 40.741 0.00 1.20 36.32 2.32
1625 1752 7.259088 AGACCCAACTCTAGTTATGAATTGT 57.741 36.000 0.00 0.00 36.32 2.71
1626 1753 7.331791 AGACCCAACTCTAGTTATGAATTGTC 58.668 38.462 0.00 0.00 36.32 3.18
1627 1754 7.016153 ACCCAACTCTAGTTATGAATTGTCA 57.984 36.000 0.00 0.00 36.32 3.58
1628 1755 7.633789 ACCCAACTCTAGTTATGAATTGTCAT 58.366 34.615 0.00 0.00 46.52 3.06
1629 1756 8.768397 ACCCAACTCTAGTTATGAATTGTCATA 58.232 33.333 0.00 0.00 44.30 2.15
1630 1757 9.784531 CCCAACTCTAGTTATGAATTGTCATAT 57.215 33.333 0.00 0.00 44.42 1.78
1655 1782 9.863650 ATAAGTATCTTACCTAGCTCTGTTACA 57.136 33.333 0.00 0.00 0.00 2.41
1659 1786 4.948621 TCTTACCTAGCTCTGTTACACCTC 59.051 45.833 0.00 0.00 0.00 3.85
1660 1787 3.459710 ACCTAGCTCTGTTACACCTCT 57.540 47.619 0.00 0.00 0.00 3.69
1661 1788 3.093057 ACCTAGCTCTGTTACACCTCTG 58.907 50.000 0.00 0.00 0.00 3.35
1662 1789 3.245300 ACCTAGCTCTGTTACACCTCTGA 60.245 47.826 0.00 0.00 0.00 3.27
1663 1790 3.957497 CCTAGCTCTGTTACACCTCTGAT 59.043 47.826 0.00 0.00 0.00 2.90
1666 1793 4.861196 AGCTCTGTTACACCTCTGATAGA 58.139 43.478 0.00 0.00 0.00 1.98
1671 1798 7.101652 TCTGTTACACCTCTGATAGATGTTC 57.898 40.000 0.00 0.00 0.00 3.18
1672 1799 6.663523 TCTGTTACACCTCTGATAGATGTTCA 59.336 38.462 0.00 0.00 0.00 3.18
1673 1800 6.867550 TGTTACACCTCTGATAGATGTTCAG 58.132 40.000 0.00 0.00 41.61 3.02
1674 1801 4.399004 ACACCTCTGATAGATGTTCAGC 57.601 45.455 0.00 0.00 40.35 4.26
1675 1802 3.771479 ACACCTCTGATAGATGTTCAGCA 59.229 43.478 0.00 0.00 40.35 4.41
1676 1803 4.223700 ACACCTCTGATAGATGTTCAGCAA 59.776 41.667 0.00 0.00 40.35 3.91
1677 1804 4.569966 CACCTCTGATAGATGTTCAGCAAC 59.430 45.833 0.00 0.00 40.35 4.17
1678 1805 4.469227 ACCTCTGATAGATGTTCAGCAACT 59.531 41.667 0.00 0.00 40.35 3.16
1679 1806 5.658634 ACCTCTGATAGATGTTCAGCAACTA 59.341 40.000 0.00 0.00 40.35 2.24
1682 1809 7.036996 TCTGATAGATGTTCAGCAACTAGAG 57.963 40.000 0.00 0.00 40.35 2.43
1683 1810 5.595885 TGATAGATGTTCAGCAACTAGAGC 58.404 41.667 0.00 0.00 36.20 4.09
1700 1832 9.429359 CAACTAGAGCTATTAATAAGGTGGATG 57.571 37.037 0.00 0.00 0.00 3.51
1707 1839 6.072452 GCTATTAATAAGGTGGATGACTTGGC 60.072 42.308 0.00 0.00 0.00 4.52
1711 1843 0.773644 AGGTGGATGACTTGGCTGTT 59.226 50.000 0.00 0.00 0.00 3.16
1722 1854 2.760092 ACTTGGCTGTTTGTTCACATGT 59.240 40.909 0.00 0.00 0.00 3.21
1723 1855 3.951037 ACTTGGCTGTTTGTTCACATGTA 59.049 39.130 0.00 0.00 0.00 2.29
1724 1856 4.584325 ACTTGGCTGTTTGTTCACATGTAT 59.416 37.500 0.00 0.00 0.00 2.29
1726 1858 4.140536 TGGCTGTTTGTTCACATGTATCA 58.859 39.130 0.00 0.00 0.00 2.15
1727 1859 4.766373 TGGCTGTTTGTTCACATGTATCAT 59.234 37.500 0.00 0.00 0.00 2.45
1728 1860 5.106197 TGGCTGTTTGTTCACATGTATCATC 60.106 40.000 0.00 0.00 0.00 2.92
1729 1861 5.023920 GCTGTTTGTTCACATGTATCATCG 58.976 41.667 0.00 0.00 0.00 3.84
1730 1862 5.163864 GCTGTTTGTTCACATGTATCATCGA 60.164 40.000 0.00 0.00 0.00 3.59
1731 1863 6.457392 GCTGTTTGTTCACATGTATCATCGAT 60.457 38.462 0.00 0.00 0.00 3.59
1732 1864 7.003939 TGTTTGTTCACATGTATCATCGATC 57.996 36.000 0.00 0.00 0.00 3.69
1764 1907 7.849804 TTAAGATGTTCATCCTGTTCTAAGC 57.150 36.000 8.89 0.00 0.00 3.09
1765 1908 5.426689 AGATGTTCATCCTGTTCTAAGCA 57.573 39.130 8.89 0.00 0.00 3.91
1767 1910 4.623932 TGTTCATCCTGTTCTAAGCAGT 57.376 40.909 0.00 0.00 32.41 4.40
1768 1911 5.738619 TGTTCATCCTGTTCTAAGCAGTA 57.261 39.130 0.00 0.00 32.41 2.74
1769 1912 5.479306 TGTTCATCCTGTTCTAAGCAGTAC 58.521 41.667 0.00 0.00 32.41 2.73
1770 1913 5.011635 TGTTCATCCTGTTCTAAGCAGTACA 59.988 40.000 0.00 0.00 31.95 2.90
1772 1915 4.526650 TCATCCTGTTCTAAGCAGTACACA 59.473 41.667 0.00 0.00 29.96 3.72
1777 1920 5.470098 CCTGTTCTAAGCAGTACACATTTGT 59.530 40.000 0.00 0.00 40.02 2.83
1793 1936 3.780804 TTTGTAGCCAGCCTTTAGTGA 57.219 42.857 0.00 0.00 0.00 3.41
1795 1938 3.266510 TGTAGCCAGCCTTTAGTGATG 57.733 47.619 0.00 0.00 0.00 3.07
1802 1945 4.021981 GCCAGCCTTTAGTGATGAAGTTTT 60.022 41.667 0.00 0.00 0.00 2.43
1804 1947 6.623767 GCCAGCCTTTAGTGATGAAGTTTTAG 60.624 42.308 0.00 0.00 0.00 1.85
1816 1959 3.818773 TGAAGTTTTAGTTAGTGCAGGGC 59.181 43.478 0.00 0.00 0.00 5.19
1821 1964 4.627284 TTTAGTTAGTGCAGGGCAGTTA 57.373 40.909 3.63 0.00 39.37 2.24
1822 1965 4.627284 TTAGTTAGTGCAGGGCAGTTAA 57.373 40.909 3.63 0.00 39.37 2.01
1836 1979 6.543465 CAGGGCAGTTAAGATTGATTGTCATA 59.457 38.462 0.00 0.00 0.00 2.15
1837 1980 7.230108 CAGGGCAGTTAAGATTGATTGTCATAT 59.770 37.037 0.00 0.00 0.00 1.78
1844 1987 9.875675 GTTAAGATTGATTGTCATATTGCTCTC 57.124 33.333 0.00 0.00 0.00 3.20
1845 1988 9.617523 TTAAGATTGATTGTCATATTGCTCTCA 57.382 29.630 0.00 0.00 0.00 3.27
1846 1989 7.493743 AGATTGATTGTCATATTGCTCTCAC 57.506 36.000 0.00 0.00 0.00 3.51
1853 1996 5.414360 TGTCATATTGCTCTCACTGTCTTC 58.586 41.667 0.00 0.00 0.00 2.87
1854 1997 5.186603 TGTCATATTGCTCTCACTGTCTTCT 59.813 40.000 0.00 0.00 0.00 2.85
1860 2003 9.979578 ATATTGCTCTCACTGTCTTCTTATAAG 57.020 33.333 6.11 6.11 0.00 1.73
1863 2006 8.349568 TGCTCTCACTGTCTTCTTATAAGTTA 57.650 34.615 12.19 1.78 0.00 2.24
1869 2012 9.204570 TCACTGTCTTCTTATAAGTTAAAGCAC 57.795 33.333 12.19 9.10 0.00 4.40
1871 2014 9.726438 ACTGTCTTCTTATAAGTTAAAGCACAT 57.274 29.630 12.19 4.50 0.00 3.21
1883 2028 8.854614 AAGTTAAAGCACATCTCTCATTTAGT 57.145 30.769 0.00 0.00 0.00 2.24
1884 2029 9.944376 AAGTTAAAGCACATCTCTCATTTAGTA 57.056 29.630 0.00 0.00 0.00 1.82
1885 2030 9.944376 AGTTAAAGCACATCTCTCATTTAGTAA 57.056 29.630 0.00 0.00 0.00 2.24
1889 2034 6.940739 AGCACATCTCTCATTTAGTAAGTGT 58.059 36.000 5.42 0.00 0.00 3.55
1891 2036 8.531982 AGCACATCTCTCATTTAGTAAGTGTTA 58.468 33.333 5.42 0.00 0.00 2.41
1892 2037 9.319143 GCACATCTCTCATTTAGTAAGTGTTAT 57.681 33.333 5.42 0.00 0.00 1.89
1925 2088 6.881570 TGCATCTGATAAGATTCTGTCTTGA 58.118 36.000 0.00 0.00 46.50 3.02
1926 2089 7.333323 TGCATCTGATAAGATTCTGTCTTGAA 58.667 34.615 0.00 0.00 46.50 2.69
2060 2225 9.623000 GGTATACTTCTCTTCTCTCTTTAGTCT 57.377 37.037 2.25 0.00 0.00 3.24
2271 2480 7.696992 TTTTGTTGTTTTCTACTGGAACTCT 57.303 32.000 0.00 0.00 33.13 3.24
2285 2494 9.877178 CTACTGGAACTCTTATGTTTCTATGTT 57.123 33.333 0.00 0.00 0.00 2.71
2297 2506 4.284490 TGTTTCTATGTTGAGAGGCAGACT 59.716 41.667 0.00 0.00 0.00 3.24
2422 2633 8.236586 TCTATTGTTCAATGTGCTATTTGTGAC 58.763 33.333 8.11 0.00 0.00 3.67
2429 2640 3.317150 TGTGCTATTTGTGACGAGTCTG 58.683 45.455 4.78 0.00 0.00 3.51
2432 2643 4.211374 GTGCTATTTGTGACGAGTCTGTTT 59.789 41.667 4.78 0.00 0.00 2.83
2433 2644 4.814234 TGCTATTTGTGACGAGTCTGTTTT 59.186 37.500 4.78 0.00 0.00 2.43
2434 2645 5.295787 TGCTATTTGTGACGAGTCTGTTTTT 59.704 36.000 4.78 0.00 0.00 1.94
2459 2670 9.695526 TTTGTTGTTTCAATATGAGATCTTTGG 57.304 29.630 0.00 0.00 0.00 3.28
2467 2678 8.868522 TCAATATGAGATCTTTGGTCAAGTTT 57.131 30.769 0.00 0.00 33.66 2.66
2484 2695 9.503427 GGTCAAGTTTTTATGCATGTAATAGAC 57.497 33.333 10.16 7.78 0.00 2.59
2565 2776 7.285788 CAGCAAGAACATAAAAATGCAACTTC 58.714 34.615 0.00 0.00 36.30 3.01
2598 2809 5.176741 AGCTCAATGGTTCATTTCTCTCT 57.823 39.130 0.00 0.00 31.05 3.10
2600 2811 5.647225 AGCTCAATGGTTCATTTCTCTCTTC 59.353 40.000 0.00 0.00 31.05 2.87
2615 2826 3.738982 TCTCTTCGCATTTTGAGTTCCA 58.261 40.909 0.00 0.00 0.00 3.53
2616 2827 4.133820 TCTCTTCGCATTTTGAGTTCCAA 58.866 39.130 0.00 0.00 0.00 3.53
2625 2836 5.754890 GCATTTTGAGTTCCAACATTGTCTT 59.245 36.000 0.00 0.00 33.85 3.01
2626 2837 6.292488 GCATTTTGAGTTCCAACATTGTCTTG 60.292 38.462 0.00 0.00 33.85 3.02
2631 2844 5.295787 TGAGTTCCAACATTGTCTTGTACAC 59.704 40.000 0.00 0.00 38.00 2.90
2658 2871 5.026121 ACAGAGAGATTGTATGGAAGGTCA 58.974 41.667 0.00 0.00 0.00 4.02
2668 2881 7.595819 TTGTATGGAAGGTCATTTTGAGTTT 57.404 32.000 0.00 0.00 0.00 2.66
2670 2883 5.728637 ATGGAAGGTCATTTTGAGTTTCC 57.271 39.130 10.71 10.71 39.05 3.13
2674 2887 2.893489 AGGTCATTTTGAGTTTCCCAGC 59.107 45.455 0.00 0.00 0.00 4.85
2677 2890 4.202253 GGTCATTTTGAGTTTCCCAGCTTT 60.202 41.667 0.00 0.00 0.00 3.51
2682 2895 4.817318 TTGAGTTTCCCAGCTTTGTTTT 57.183 36.364 0.00 0.00 0.00 2.43
2694 2907 6.255670 CCCAGCTTTGTTTTCTAACTCAAAAC 59.744 38.462 1.84 1.84 41.97 2.43
2697 2910 6.967199 AGCTTTGTTTTCTAACTCAAAACTCG 59.033 34.615 8.93 0.00 42.08 4.18
2698 2911 6.745907 GCTTTGTTTTCTAACTCAAAACTCGT 59.254 34.615 8.93 0.00 42.08 4.18
2699 2912 7.906527 GCTTTGTTTTCTAACTCAAAACTCGTA 59.093 33.333 8.93 0.00 42.08 3.43
2700 2913 9.207042 CTTTGTTTTCTAACTCAAAACTCGTAC 57.793 33.333 8.93 0.00 42.08 3.67
2701 2914 8.483307 TTGTTTTCTAACTCAAAACTCGTACT 57.517 30.769 8.93 0.00 42.08 2.73
2702 2915 8.123445 TGTTTTCTAACTCAAAACTCGTACTC 57.877 34.615 8.93 0.00 42.08 2.59
2703 2916 7.223387 TGTTTTCTAACTCAAAACTCGTACTCC 59.777 37.037 8.93 0.00 42.08 3.85
2704 2917 5.382618 TCTAACTCAAAACTCGTACTCCC 57.617 43.478 0.00 0.00 0.00 4.30
2705 2918 5.075493 TCTAACTCAAAACTCGTACTCCCT 58.925 41.667 0.00 0.00 0.00 4.20
2706 2919 3.938289 ACTCAAAACTCGTACTCCCTC 57.062 47.619 0.00 0.00 0.00 4.30
2707 2920 2.561858 ACTCAAAACTCGTACTCCCTCC 59.438 50.000 0.00 0.00 0.00 4.30
2708 2921 1.542915 TCAAAACTCGTACTCCCTCCG 59.457 52.381 0.00 0.00 0.00 4.63
2709 2922 1.271656 CAAAACTCGTACTCCCTCCGT 59.728 52.381 0.00 0.00 0.00 4.69
2710 2923 1.625511 AAACTCGTACTCCCTCCGTT 58.374 50.000 0.00 0.00 0.00 4.44
2711 2924 0.886563 AACTCGTACTCCCTCCGTTG 59.113 55.000 0.00 0.00 0.00 4.10
2712 2925 0.251077 ACTCGTACTCCCTCCGTTGT 60.251 55.000 0.00 0.00 0.00 3.32
2713 2926 1.003580 ACTCGTACTCCCTCCGTTGTA 59.996 52.381 0.00 0.00 0.00 2.41
2714 2927 2.086869 CTCGTACTCCCTCCGTTGTAA 58.913 52.381 0.00 0.00 0.00 2.41
2715 2928 2.489329 CTCGTACTCCCTCCGTTGTAAA 59.511 50.000 0.00 0.00 0.00 2.01
2716 2929 2.890311 TCGTACTCCCTCCGTTGTAAAA 59.110 45.455 0.00 0.00 0.00 1.52
2717 2930 3.511146 TCGTACTCCCTCCGTTGTAAAAT 59.489 43.478 0.00 0.00 0.00 1.82
2718 2931 4.021192 TCGTACTCCCTCCGTTGTAAAATT 60.021 41.667 0.00 0.00 0.00 1.82
2719 2932 4.328169 CGTACTCCCTCCGTTGTAAAATTC 59.672 45.833 0.00 0.00 0.00 2.17
2720 2933 4.635699 ACTCCCTCCGTTGTAAAATTCT 57.364 40.909 0.00 0.00 0.00 2.40
2721 2934 4.981812 ACTCCCTCCGTTGTAAAATTCTT 58.018 39.130 0.00 0.00 0.00 2.52
2722 2935 4.760204 ACTCCCTCCGTTGTAAAATTCTTG 59.240 41.667 0.00 0.00 0.00 3.02
2723 2936 4.721132 TCCCTCCGTTGTAAAATTCTTGT 58.279 39.130 0.00 0.00 0.00 3.16
2724 2937 4.758165 TCCCTCCGTTGTAAAATTCTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
2725 2938 4.760204 CCCTCCGTTGTAAAATTCTTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
2726 2939 5.240844 CCCTCCGTTGTAAAATTCTTGTCTT 59.759 40.000 0.00 0.00 0.00 3.01
2727 2940 6.428771 CCCTCCGTTGTAAAATTCTTGTCTTA 59.571 38.462 0.00 0.00 0.00 2.10
2728 2941 7.040961 CCCTCCGTTGTAAAATTCTTGTCTTAA 60.041 37.037 0.00 0.00 0.00 1.85
2729 2942 7.801783 CCTCCGTTGTAAAATTCTTGTCTTAAC 59.198 37.037 0.00 0.00 0.00 2.01
2730 2943 8.441312 TCCGTTGTAAAATTCTTGTCTTAACT 57.559 30.769 0.00 0.00 0.00 2.24
2731 2944 9.545105 TCCGTTGTAAAATTCTTGTCTTAACTA 57.455 29.630 0.00 0.00 0.00 2.24
2764 2977 7.982761 AAATTATTTTGCCATGCTTCTTTGA 57.017 28.000 0.00 0.00 0.00 2.69
2765 2978 7.982761 AATTATTTTGCCATGCTTCTTTGAA 57.017 28.000 0.00 0.00 0.00 2.69
2766 2979 6.783892 TTATTTTGCCATGCTTCTTTGAAC 57.216 33.333 0.00 0.00 0.00 3.18
2767 2980 2.818130 TTGCCATGCTTCTTTGAACC 57.182 45.000 0.00 0.00 0.00 3.62
2768 2981 1.999648 TGCCATGCTTCTTTGAACCT 58.000 45.000 0.00 0.00 0.00 3.50
2769 2982 1.614903 TGCCATGCTTCTTTGAACCTG 59.385 47.619 0.00 0.00 0.00 4.00
2770 2983 1.670967 GCCATGCTTCTTTGAACCTGC 60.671 52.381 0.00 0.00 0.00 4.85
2771 2984 1.891150 CCATGCTTCTTTGAACCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
2772 2985 3.084039 CCATGCTTCTTTGAACCTGCTA 58.916 45.455 0.00 0.00 0.00 3.49
2773 2986 3.698040 CCATGCTTCTTTGAACCTGCTAT 59.302 43.478 0.00 0.00 0.00 2.97
2774 2987 4.159135 CCATGCTTCTTTGAACCTGCTATT 59.841 41.667 0.00 0.00 0.00 1.73
2775 2988 4.771590 TGCTTCTTTGAACCTGCTATTG 57.228 40.909 0.00 0.00 0.00 1.90
2776 2989 4.144297 TGCTTCTTTGAACCTGCTATTGT 58.856 39.130 0.00 0.00 0.00 2.71
2777 2990 4.022935 TGCTTCTTTGAACCTGCTATTGTG 60.023 41.667 0.00 0.00 0.00 3.33
2778 2991 4.022849 GCTTCTTTGAACCTGCTATTGTGT 60.023 41.667 0.00 0.00 0.00 3.72
2779 2992 5.437289 TTCTTTGAACCTGCTATTGTGTG 57.563 39.130 0.00 0.00 0.00 3.82
2780 2993 4.713553 TCTTTGAACCTGCTATTGTGTGA 58.286 39.130 0.00 0.00 0.00 3.58
2781 2994 5.316167 TCTTTGAACCTGCTATTGTGTGAT 58.684 37.500 0.00 0.00 0.00 3.06
2782 2995 5.769662 TCTTTGAACCTGCTATTGTGTGATT 59.230 36.000 0.00 0.00 0.00 2.57
2783 2996 6.265196 TCTTTGAACCTGCTATTGTGTGATTT 59.735 34.615 0.00 0.00 0.00 2.17
2784 2997 7.446931 TCTTTGAACCTGCTATTGTGTGATTTA 59.553 33.333 0.00 0.00 0.00 1.40
2785 2998 6.741992 TGAACCTGCTATTGTGTGATTTAG 57.258 37.500 0.00 0.00 0.00 1.85
2786 2999 5.123820 TGAACCTGCTATTGTGTGATTTAGC 59.876 40.000 0.00 0.00 38.01 3.09
2787 3000 3.947834 ACCTGCTATTGTGTGATTTAGCC 59.052 43.478 0.00 0.00 36.97 3.93
2788 3001 3.002656 CCTGCTATTGTGTGATTTAGCCG 59.997 47.826 0.00 0.00 36.97 5.52
2789 3002 3.605634 TGCTATTGTGTGATTTAGCCGT 58.394 40.909 0.00 0.00 36.97 5.68
2790 3003 4.760878 TGCTATTGTGTGATTTAGCCGTA 58.239 39.130 0.00 0.00 36.97 4.02
2791 3004 4.808895 TGCTATTGTGTGATTTAGCCGTAG 59.191 41.667 0.00 0.00 36.97 3.51
2792 3005 4.318831 GCTATTGTGTGATTTAGCCGTAGC 60.319 45.833 0.00 0.00 40.32 3.58
2802 3015 4.988065 GCCGTAGCTCAGTGTTCA 57.012 55.556 0.00 0.00 35.50 3.18
2803 3016 3.442996 GCCGTAGCTCAGTGTTCAT 57.557 52.632 0.00 0.00 35.50 2.57
2804 3017 1.281899 GCCGTAGCTCAGTGTTCATC 58.718 55.000 0.00 0.00 35.50 2.92
2805 3018 1.134965 GCCGTAGCTCAGTGTTCATCT 60.135 52.381 0.00 0.00 35.50 2.90
2806 3019 2.675317 GCCGTAGCTCAGTGTTCATCTT 60.675 50.000 0.00 0.00 35.50 2.40
2807 3020 3.589988 CCGTAGCTCAGTGTTCATCTTT 58.410 45.455 0.00 0.00 0.00 2.52
2808 3021 3.997021 CCGTAGCTCAGTGTTCATCTTTT 59.003 43.478 0.00 0.00 0.00 2.27
2809 3022 4.143030 CCGTAGCTCAGTGTTCATCTTTTG 60.143 45.833 0.00 0.00 0.00 2.44
2810 3023 4.449068 CGTAGCTCAGTGTTCATCTTTTGT 59.551 41.667 0.00 0.00 0.00 2.83
2811 3024 5.050091 CGTAGCTCAGTGTTCATCTTTTGTT 60.050 40.000 0.00 0.00 0.00 2.83
2812 3025 6.145534 CGTAGCTCAGTGTTCATCTTTTGTTA 59.854 38.462 0.00 0.00 0.00 2.41
2813 3026 6.942532 AGCTCAGTGTTCATCTTTTGTTAA 57.057 33.333 0.00 0.00 0.00 2.01
2814 3027 6.963796 AGCTCAGTGTTCATCTTTTGTTAAG 58.036 36.000 0.00 0.00 0.00 1.85
2815 3028 6.543831 AGCTCAGTGTTCATCTTTTGTTAAGT 59.456 34.615 0.00 0.00 0.00 2.24
2816 3029 7.715249 AGCTCAGTGTTCATCTTTTGTTAAGTA 59.285 33.333 0.00 0.00 0.00 2.24
2817 3030 8.507249 GCTCAGTGTTCATCTTTTGTTAAGTAT 58.493 33.333 0.00 0.00 0.00 2.12
2819 3032 9.778741 TCAGTGTTCATCTTTTGTTAAGTATCT 57.221 29.630 0.00 0.00 0.00 1.98
2834 3047 9.244292 TGTTAAGTATCTTGAGTAGATCACTGT 57.756 33.333 0.00 0.00 42.69 3.55
2835 3048 9.724839 GTTAAGTATCTTGAGTAGATCACTGTC 57.275 37.037 0.00 0.00 42.69 3.51
2836 3049 7.946381 AAGTATCTTGAGTAGATCACTGTCA 57.054 36.000 0.00 0.00 42.69 3.58
2837 3050 8.532186 AAGTATCTTGAGTAGATCACTGTCAT 57.468 34.615 0.00 0.00 42.69 3.06
2838 3051 7.939782 AGTATCTTGAGTAGATCACTGTCATG 58.060 38.462 0.00 0.00 42.69 3.07
2839 3052 6.788598 ATCTTGAGTAGATCACTGTCATGT 57.211 37.500 0.00 0.00 39.46 3.21
2840 3053 7.888250 ATCTTGAGTAGATCACTGTCATGTA 57.112 36.000 0.00 0.00 39.46 2.29
2841 3054 7.888250 TCTTGAGTAGATCACTGTCATGTAT 57.112 36.000 0.00 0.00 37.72 2.29
2842 3055 8.298729 TCTTGAGTAGATCACTGTCATGTATT 57.701 34.615 0.00 0.00 37.72 1.89
2843 3056 8.753133 TCTTGAGTAGATCACTGTCATGTATTT 58.247 33.333 0.00 0.00 37.72 1.40
2844 3057 9.376075 CTTGAGTAGATCACTGTCATGTATTTT 57.624 33.333 0.00 0.00 37.72 1.82
2845 3058 8.707938 TGAGTAGATCACTGTCATGTATTTTG 57.292 34.615 0.00 0.00 37.72 2.44
2846 3059 8.314021 TGAGTAGATCACTGTCATGTATTTTGT 58.686 33.333 0.00 0.00 37.72 2.83
2847 3060 9.155975 GAGTAGATCACTGTCATGTATTTTGTT 57.844 33.333 0.00 0.00 37.72 2.83
2848 3061 8.939929 AGTAGATCACTGTCATGTATTTTGTTG 58.060 33.333 0.00 0.00 35.62 3.33
2849 3062 6.615088 AGATCACTGTCATGTATTTTGTTGC 58.385 36.000 0.00 0.00 0.00 4.17
2850 3063 6.432162 AGATCACTGTCATGTATTTTGTTGCT 59.568 34.615 0.00 0.00 0.00 3.91
2851 3064 7.607607 AGATCACTGTCATGTATTTTGTTGCTA 59.392 33.333 0.00 0.00 0.00 3.49
2852 3065 7.686438 TCACTGTCATGTATTTTGTTGCTAT 57.314 32.000 0.00 0.00 0.00 2.97
2853 3066 7.529158 TCACTGTCATGTATTTTGTTGCTATG 58.471 34.615 0.00 0.00 0.00 2.23
2854 3067 7.174772 TCACTGTCATGTATTTTGTTGCTATGT 59.825 33.333 0.00 0.00 0.00 2.29
2855 3068 7.809331 CACTGTCATGTATTTTGTTGCTATGTT 59.191 33.333 0.00 0.00 0.00 2.71
2856 3069 9.008965 ACTGTCATGTATTTTGTTGCTATGTTA 57.991 29.630 0.00 0.00 0.00 2.41
2857 3070 9.494479 CTGTCATGTATTTTGTTGCTATGTTAG 57.506 33.333 0.00 0.00 0.00 2.34
2858 3071 9.225436 TGTCATGTATTTTGTTGCTATGTTAGA 57.775 29.630 0.00 0.00 0.00 2.10
2859 3072 9.708222 GTCATGTATTTTGTTGCTATGTTAGAG 57.292 33.333 0.00 0.00 0.00 2.43
2860 3073 9.448438 TCATGTATTTTGTTGCTATGTTAGAGT 57.552 29.630 0.00 0.00 0.00 3.24
2861 3074 9.494479 CATGTATTTTGTTGCTATGTTAGAGTG 57.506 33.333 0.00 0.00 0.00 3.51
2862 3075 7.526608 TGTATTTTGTTGCTATGTTAGAGTGC 58.473 34.615 0.00 0.00 0.00 4.40
2863 3076 6.573664 ATTTTGTTGCTATGTTAGAGTGCA 57.426 33.333 0.00 0.00 0.00 4.57
2864 3077 5.611796 TTTGTTGCTATGTTAGAGTGCAG 57.388 39.130 0.00 0.00 35.02 4.41
2865 3078 4.271696 TGTTGCTATGTTAGAGTGCAGT 57.728 40.909 0.00 0.00 35.02 4.40
2866 3079 3.996363 TGTTGCTATGTTAGAGTGCAGTG 59.004 43.478 0.00 0.00 35.02 3.66
2867 3080 3.961480 TGCTATGTTAGAGTGCAGTGT 57.039 42.857 0.00 0.00 0.00 3.55
2868 3081 3.849911 TGCTATGTTAGAGTGCAGTGTC 58.150 45.455 0.00 0.00 0.00 3.67
2869 3082 3.511540 TGCTATGTTAGAGTGCAGTGTCT 59.488 43.478 0.00 0.00 0.00 3.41
2870 3083 4.021104 TGCTATGTTAGAGTGCAGTGTCTT 60.021 41.667 0.00 0.00 0.00 3.01
2871 3084 5.185056 TGCTATGTTAGAGTGCAGTGTCTTA 59.815 40.000 0.00 0.00 0.00 2.10
2872 3085 6.100004 GCTATGTTAGAGTGCAGTGTCTTAA 58.900 40.000 0.00 0.00 0.00 1.85
2873 3086 6.035112 GCTATGTTAGAGTGCAGTGTCTTAAC 59.965 42.308 0.00 3.64 0.00 2.01
2874 3087 5.531122 TGTTAGAGTGCAGTGTCTTAACT 57.469 39.130 0.00 0.00 0.00 2.24
2875 3088 6.644248 TGTTAGAGTGCAGTGTCTTAACTA 57.356 37.500 0.00 0.00 0.00 2.24
2876 3089 7.046292 TGTTAGAGTGCAGTGTCTTAACTAA 57.954 36.000 0.00 0.00 0.00 2.24
2877 3090 7.145985 TGTTAGAGTGCAGTGTCTTAACTAAG 58.854 38.462 0.00 0.00 34.65 2.18
2878 3091 7.013942 TGTTAGAGTGCAGTGTCTTAACTAAGA 59.986 37.037 0.00 0.00 39.82 2.10
2921 3134 8.507524 AGGGAGTACAATGTTAGATTTTTAGC 57.492 34.615 0.00 0.00 0.00 3.09
2953 3166 7.826690 TGTTTGAAGAGCTAAACTGTTCTTTT 58.173 30.769 10.37 0.00 46.36 2.27
2954 3167 8.303876 TGTTTGAAGAGCTAAACTGTTCTTTTT 58.696 29.630 10.37 0.00 46.36 1.94
2955 3168 9.783256 GTTTGAAGAGCTAAACTGTTCTTTTTA 57.217 29.630 3.11 0.00 46.36 1.52
2957 3170 9.783256 TTGAAGAGCTAAACTGTTCTTTTTAAC 57.217 29.630 0.00 0.00 46.36 2.01
2958 3171 9.174166 TGAAGAGCTAAACTGTTCTTTTTAACT 57.826 29.630 0.00 0.00 46.36 2.24
2960 3173 9.788960 AAGAGCTAAACTGTTCTTTTTAACTTG 57.211 29.630 0.00 0.00 34.62 3.16
2961 3174 8.406297 AGAGCTAAACTGTTCTTTTTAACTTGG 58.594 33.333 0.00 0.00 0.00 3.61
2962 3175 6.978659 AGCTAAACTGTTCTTTTTAACTTGGC 59.021 34.615 0.00 0.00 0.00 4.52
2963 3176 6.978659 GCTAAACTGTTCTTTTTAACTTGGCT 59.021 34.615 0.00 0.00 0.00 4.75
2964 3177 7.167635 GCTAAACTGTTCTTTTTAACTTGGCTC 59.832 37.037 0.00 0.00 0.00 4.70
2965 3178 6.524101 AACTGTTCTTTTTAACTTGGCTCA 57.476 33.333 0.00 0.00 0.00 4.26
2966 3179 5.891451 ACTGTTCTTTTTAACTTGGCTCAC 58.109 37.500 0.00 0.00 0.00 3.51
2967 3180 5.417580 ACTGTTCTTTTTAACTTGGCTCACA 59.582 36.000 0.00 0.00 0.00 3.58
2968 3181 5.646606 TGTTCTTTTTAACTTGGCTCACAC 58.353 37.500 0.00 0.00 0.00 3.82
2969 3182 5.417580 TGTTCTTTTTAACTTGGCTCACACT 59.582 36.000 0.00 0.00 0.00 3.55
2970 3183 6.071616 TGTTCTTTTTAACTTGGCTCACACTT 60.072 34.615 0.00 0.00 0.00 3.16
2971 3184 6.524101 TCTTTTTAACTTGGCTCACACTTT 57.476 33.333 0.00 0.00 0.00 2.66
2972 3185 7.633193 TCTTTTTAACTTGGCTCACACTTTA 57.367 32.000 0.00 0.00 0.00 1.85
2973 3186 8.232913 TCTTTTTAACTTGGCTCACACTTTAT 57.767 30.769 0.00 0.00 0.00 1.40
2974 3187 8.691797 TCTTTTTAACTTGGCTCACACTTTATT 58.308 29.630 0.00 0.00 0.00 1.40
2975 3188 9.313118 CTTTTTAACTTGGCTCACACTTTATTT 57.687 29.630 0.00 0.00 0.00 1.40
2976 3189 9.660180 TTTTTAACTTGGCTCACACTTTATTTT 57.340 25.926 0.00 0.00 0.00 1.82
2977 3190 8.641499 TTTAACTTGGCTCACACTTTATTTTG 57.359 30.769 0.00 0.00 0.00 2.44
2978 3191 5.200368 ACTTGGCTCACACTTTATTTTGG 57.800 39.130 0.00 0.00 0.00 3.28
2979 3192 4.649218 ACTTGGCTCACACTTTATTTTGGT 59.351 37.500 0.00 0.00 0.00 3.67
2980 3193 4.582701 TGGCTCACACTTTATTTTGGTG 57.417 40.909 0.00 0.00 37.05 4.17
2981 3194 3.243704 TGGCTCACACTTTATTTTGGTGC 60.244 43.478 0.00 0.00 34.70 5.01
2982 3195 3.243704 GGCTCACACTTTATTTTGGTGCA 60.244 43.478 0.00 0.00 34.70 4.57
3041 3254 7.219344 TGACGTACACATTTGTATTACATCTCG 59.781 37.037 0.00 0.00 40.40 4.04
3071 3284 9.715121 AATATCAAACCCAAATATGAATCATGC 57.285 29.630 5.91 0.00 0.00 4.06
3072 3285 5.916318 TCAAACCCAAATATGAATCATGCC 58.084 37.500 5.91 0.00 0.00 4.40
3073 3286 5.662208 TCAAACCCAAATATGAATCATGCCT 59.338 36.000 5.91 0.00 0.00 4.75
3074 3287 6.156602 TCAAACCCAAATATGAATCATGCCTT 59.843 34.615 5.91 0.00 0.00 4.35
3075 3288 5.540400 ACCCAAATATGAATCATGCCTTG 57.460 39.130 5.91 6.43 0.00 3.61
3076 3289 5.210430 ACCCAAATATGAATCATGCCTTGA 58.790 37.500 5.91 0.00 39.12 3.02
3149 3394 1.913419 GGTTGTACTCCCTCCATTCCA 59.087 52.381 0.00 0.00 0.00 3.53
3154 3399 5.269554 TGTACTCCCTCCATTCCAAAATT 57.730 39.130 0.00 0.00 0.00 1.82
3161 3406 6.187682 TCCCTCCATTCCAAAATTTCTACTC 58.812 40.000 0.00 0.00 0.00 2.59
3184 3429 7.390718 ACTCCTATAAAAATGTGAGTTGGTGAC 59.609 37.037 0.00 0.00 29.20 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.118356 TTCGCAATTTGGGGCTGGTT 61.118 50.000 12.87 0.00 0.00 3.67
12 13 0.904394 ATTCGCAATTTGGGGCTGGT 60.904 50.000 12.87 0.00 0.00 4.00
27 28 1.649171 CCGTTCTCGTGACTGAATTCG 59.351 52.381 0.04 0.00 35.01 3.34
56 58 6.523201 GGAAATGTGTATCGATTTGTGTTCAC 59.477 38.462 1.71 3.49 0.00 3.18
57 59 6.205658 TGGAAATGTGTATCGATTTGTGTTCA 59.794 34.615 1.71 0.00 0.00 3.18
58 60 6.607689 TGGAAATGTGTATCGATTTGTGTTC 58.392 36.000 1.71 1.32 0.00 3.18
67 69 6.873997 ACTATGAACTGGAAATGTGTATCGA 58.126 36.000 0.00 0.00 0.00 3.59
70 72 8.090788 AGGTACTATGAACTGGAAATGTGTAT 57.909 34.615 0.00 0.00 36.02 2.29
79 81 8.840200 ATAAGAAGAAGGTACTATGAACTGGA 57.160 34.615 0.00 0.00 38.49 3.86
87 89 7.174599 ACGATGCGTATAAGAAGAAGGTACTAT 59.825 37.037 0.00 0.00 36.08 2.12
88 90 6.484643 ACGATGCGTATAAGAAGAAGGTACTA 59.515 38.462 0.00 0.00 36.08 1.82
89 91 5.298777 ACGATGCGTATAAGAAGAAGGTACT 59.701 40.000 0.00 0.00 38.66 2.73
121 126 1.890489 GTTTTGGGTGGGTACATGTCC 59.110 52.381 0.00 3.51 0.00 4.02
130 135 1.324383 GGTACTGTGTTTTGGGTGGG 58.676 55.000 0.00 0.00 0.00 4.61
162 167 1.270907 AGAGTTGGCGAAGGATGAGT 58.729 50.000 0.00 0.00 0.00 3.41
166 171 5.542779 GTTCATATAGAGTTGGCGAAGGAT 58.457 41.667 0.00 0.00 0.00 3.24
172 177 4.565166 TGTTTCGTTCATATAGAGTTGGCG 59.435 41.667 0.00 0.00 0.00 5.69
175 180 8.185003 TGATGTGTTTCGTTCATATAGAGTTG 57.815 34.615 0.00 0.00 0.00 3.16
177 182 8.771920 TTTGATGTGTTTCGTTCATATAGAGT 57.228 30.769 0.00 0.00 0.00 3.24
217 222 4.867608 GGATCAGCAAAGTGAGAAGAGTAC 59.132 45.833 0.00 0.00 0.00 2.73
219 224 3.307339 GGGATCAGCAAAGTGAGAAGAGT 60.307 47.826 0.00 0.00 0.00 3.24
220 225 3.269178 GGGATCAGCAAAGTGAGAAGAG 58.731 50.000 0.00 0.00 0.00 2.85
225 230 3.618351 AGAATGGGATCAGCAAAGTGAG 58.382 45.455 0.00 0.00 0.00 3.51
241 246 5.486526 AGTCTCAAGAACAGCCTAAGAATG 58.513 41.667 0.00 0.00 0.00 2.67
247 252 6.246919 ACTAGTAAGTCTCAAGAACAGCCTA 58.753 40.000 0.00 0.00 0.00 3.93
249 254 5.394224 ACTAGTAAGTCTCAAGAACAGCC 57.606 43.478 0.00 0.00 0.00 4.85
281 286 5.127845 CCTATCAGTGATTCAGTGTGGTACT 59.872 44.000 18.61 4.03 41.36 2.73
282 287 5.105310 ACCTATCAGTGATTCAGTGTGGTAC 60.105 44.000 22.36 0.00 36.33 3.34
283 288 5.023452 ACCTATCAGTGATTCAGTGTGGTA 58.977 41.667 22.36 14.01 36.33 3.25
284 289 3.840666 ACCTATCAGTGATTCAGTGTGGT 59.159 43.478 18.61 19.53 36.33 4.16
285 290 4.186926 CACCTATCAGTGATTCAGTGTGG 58.813 47.826 18.61 19.04 40.34 4.17
286 291 3.620374 GCACCTATCAGTGATTCAGTGTG 59.380 47.826 18.61 17.71 40.34 3.82
287 292 3.261643 TGCACCTATCAGTGATTCAGTGT 59.738 43.478 18.61 10.34 40.34 3.55
288 293 3.865446 TGCACCTATCAGTGATTCAGTG 58.135 45.455 11.68 16.10 40.34 3.66
289 294 3.681034 GCTGCACCTATCAGTGATTCAGT 60.681 47.826 11.68 3.84 40.34 3.41
290 295 2.871022 GCTGCACCTATCAGTGATTCAG 59.129 50.000 11.68 11.50 40.34 3.02
291 296 2.236893 TGCTGCACCTATCAGTGATTCA 59.763 45.455 11.68 1.90 40.34 2.57
292 297 2.871022 CTGCTGCACCTATCAGTGATTC 59.129 50.000 11.68 0.00 40.34 2.52
293 298 2.502947 TCTGCTGCACCTATCAGTGATT 59.497 45.455 11.68 0.00 40.34 2.57
294 299 2.113807 TCTGCTGCACCTATCAGTGAT 58.886 47.619 11.12 11.12 40.34 3.06
295 300 1.560505 TCTGCTGCACCTATCAGTGA 58.439 50.000 0.00 0.00 40.34 3.41
296 301 2.616634 ATCTGCTGCACCTATCAGTG 57.383 50.000 0.00 0.00 40.88 3.66
297 302 3.494048 GCTAATCTGCTGCACCTATCAGT 60.494 47.826 0.00 0.00 34.21 3.41
298 303 3.065655 GCTAATCTGCTGCACCTATCAG 58.934 50.000 0.00 0.00 34.79 2.90
299 304 2.435437 TGCTAATCTGCTGCACCTATCA 59.565 45.455 0.00 0.00 0.00 2.15
300 305 3.117491 TGCTAATCTGCTGCACCTATC 57.883 47.619 0.00 0.00 0.00 2.08
301 306 3.118112 ACTTGCTAATCTGCTGCACCTAT 60.118 43.478 0.00 0.00 36.37 2.57
302 307 2.237143 ACTTGCTAATCTGCTGCACCTA 59.763 45.455 0.00 0.00 36.37 3.08
303 308 1.004044 ACTTGCTAATCTGCTGCACCT 59.996 47.619 0.00 0.00 36.37 4.00
304 309 1.131883 CACTTGCTAATCTGCTGCACC 59.868 52.381 0.00 0.00 36.37 5.01
305 310 1.808945 ACACTTGCTAATCTGCTGCAC 59.191 47.619 0.00 0.00 36.37 4.57
306 311 2.189594 ACACTTGCTAATCTGCTGCA 57.810 45.000 0.88 0.88 34.69 4.41
307 312 2.485426 TCAACACTTGCTAATCTGCTGC 59.515 45.455 0.00 0.00 0.00 5.25
308 313 4.959596 ATCAACACTTGCTAATCTGCTG 57.040 40.909 0.00 0.00 0.00 4.41
309 314 5.005740 TCAATCAACACTTGCTAATCTGCT 58.994 37.500 0.00 0.00 0.00 4.24
310 315 5.300969 TCAATCAACACTTGCTAATCTGC 57.699 39.130 0.00 0.00 0.00 4.26
311 316 5.675575 GCCTCAATCAACACTTGCTAATCTG 60.676 44.000 0.00 0.00 0.00 2.90
312 317 4.397417 GCCTCAATCAACACTTGCTAATCT 59.603 41.667 0.00 0.00 0.00 2.40
318 323 3.366374 GGTAAGCCTCAATCAACACTTGC 60.366 47.826 0.00 0.00 0.00 4.01
324 329 3.071479 TGTTCGGTAAGCCTCAATCAAC 58.929 45.455 0.00 0.00 0.00 3.18
331 336 2.006772 CGCATGTTCGGTAAGCCTC 58.993 57.895 0.00 0.00 0.00 4.70
404 409 4.570874 GATGGGGGAAGCCGAGGC 62.571 72.222 5.89 5.89 42.33 4.70
410 415 4.529731 GGCAGGGATGGGGGAAGC 62.530 72.222 0.00 0.00 0.00 3.86
411 416 4.195334 CGGCAGGGATGGGGGAAG 62.195 72.222 0.00 0.00 0.00 3.46
444 459 0.833834 ATAGCTGGACTGATCCCCCG 60.834 60.000 0.00 0.00 45.59 5.73
447 462 1.067495 GCGTATAGCTGGACTGATCCC 60.067 57.143 0.00 0.00 44.04 3.85
460 475 2.560504 TGGGTTGCTTGATGCGTATAG 58.439 47.619 0.00 0.00 46.63 1.31
461 476 2.700722 TGGGTTGCTTGATGCGTATA 57.299 45.000 0.00 0.00 46.63 1.47
465 480 0.597568 TTCTTGGGTTGCTTGATGCG 59.402 50.000 0.00 0.00 46.63 4.73
479 494 4.874966 AGAATCTGCTCTCGGATTTTCTTG 59.125 41.667 1.44 0.00 45.67 3.02
510 525 2.917933 TGGATCCAAATCGGTAAGCAG 58.082 47.619 13.46 0.00 35.57 4.24
552 567 2.042435 CGGAAGCTCCTCTCCCCT 60.042 66.667 0.00 0.00 33.30 4.79
614 635 1.139734 GAACCGCAGCGAGAGATCA 59.860 57.895 18.75 0.00 0.00 2.92
617 638 1.649390 GAGAGAACCGCAGCGAGAGA 61.649 60.000 18.75 0.00 0.00 3.10
618 639 1.226547 GAGAGAACCGCAGCGAGAG 60.227 63.158 18.75 1.41 0.00 3.20
619 640 1.244697 AAGAGAGAACCGCAGCGAGA 61.245 55.000 18.75 0.00 0.00 4.04
620 641 0.800300 GAAGAGAGAACCGCAGCGAG 60.800 60.000 18.75 9.19 0.00 5.03
621 642 1.213013 GAAGAGAGAACCGCAGCGA 59.787 57.895 18.75 0.00 0.00 4.93
622 643 1.807573 GGAAGAGAGAACCGCAGCG 60.808 63.158 8.18 8.18 0.00 5.18
623 644 0.739112 CAGGAAGAGAGAACCGCAGC 60.739 60.000 0.00 0.00 0.00 5.25
624 645 0.739112 GCAGGAAGAGAGAACCGCAG 60.739 60.000 0.00 0.00 0.00 5.18
625 646 1.293498 GCAGGAAGAGAGAACCGCA 59.707 57.895 0.00 0.00 0.00 5.69
626 647 1.807573 CGCAGGAAGAGAGAACCGC 60.808 63.158 0.00 0.00 0.00 5.68
687 736 2.239654 CCTACTTGGGAATCTTGCTCCA 59.760 50.000 0.00 0.00 34.34 3.86
690 741 2.507471 CCTCCTACTTGGGAATCTTGCT 59.493 50.000 0.00 0.00 34.66 3.91
691 742 2.924421 CCTCCTACTTGGGAATCTTGC 58.076 52.381 0.00 0.00 34.66 4.01
692 743 2.507471 AGCCTCCTACTTGGGAATCTTG 59.493 50.000 0.00 0.00 34.66 3.02
693 744 2.852130 AGCCTCCTACTTGGGAATCTT 58.148 47.619 0.00 0.00 34.66 2.40
716 772 3.436704 CGCAGAGTCCAGCATTCTAAAAA 59.563 43.478 6.06 0.00 0.00 1.94
720 776 1.134995 CACGCAGAGTCCAGCATTCTA 60.135 52.381 6.06 0.00 0.00 2.10
748 804 2.034879 CATATCGCGATGCCCACCC 61.035 63.158 31.05 0.00 0.00 4.61
749 805 2.034879 CCATATCGCGATGCCCACC 61.035 63.158 31.05 0.00 0.00 4.61
838 902 1.748879 GCCCGTTTGATAGGCTGCA 60.749 57.895 0.50 0.00 43.62 4.41
839 903 2.481471 GGCCCGTTTGATAGGCTGC 61.481 63.158 0.00 0.00 46.31 5.25
840 904 2.180204 CGGCCCGTTTGATAGGCTG 61.180 63.158 0.00 0.00 46.31 4.85
881 951 2.022129 CTTTATAGAGCCGCGCGGG 61.022 63.158 45.81 29.29 39.58 6.13
1072 1142 3.428316 GGAACAGTCAGAACTCGAGATCC 60.428 52.174 21.68 7.38 31.71 3.36
1078 1148 2.221981 GCAAAGGAACAGTCAGAACTCG 59.778 50.000 0.00 0.00 31.71 4.18
1080 1150 3.209410 CAGCAAAGGAACAGTCAGAACT 58.791 45.455 0.00 0.00 35.60 3.01
1107 1180 1.667830 TTCCCTTCGTCTGCGCAAG 60.668 57.895 13.05 5.11 38.14 4.01
1263 1340 2.638025 TAGGGGAAGGGGATCTGGCC 62.638 65.000 0.00 0.00 0.00 5.36
1318 1399 4.760204 ACCAAGCAACACATCTACCTAAAC 59.240 41.667 0.00 0.00 0.00 2.01
1333 1420 1.804151 GCACATACGAGAACCAAGCAA 59.196 47.619 0.00 0.00 0.00 3.91
1345 1432 4.228097 GCGCAGGCAGCACATACG 62.228 66.667 0.30 0.00 46.13 3.06
1347 1434 4.449568 TCGCGCAGGCAGCACATA 62.450 61.111 8.75 0.00 46.13 2.29
1407 1495 0.924090 CGATTCTAGGCAACAGCGAC 59.076 55.000 0.00 0.00 41.41 5.19
1494 1582 9.778741 ACAAGAACTACTCATCACAAATTAGAA 57.221 29.630 0.00 0.00 0.00 2.10
1495 1583 9.778741 AACAAGAACTACTCATCACAAATTAGA 57.221 29.630 0.00 0.00 0.00 2.10
1498 1586 8.902806 TCAAACAAGAACTACTCATCACAAATT 58.097 29.630 0.00 0.00 0.00 1.82
1499 1587 8.450578 TCAAACAAGAACTACTCATCACAAAT 57.549 30.769 0.00 0.00 0.00 2.32
1500 1588 7.857734 TCAAACAAGAACTACTCATCACAAA 57.142 32.000 0.00 0.00 0.00 2.83
1504 1592 7.599171 TCGTATCAAACAAGAACTACTCATCA 58.401 34.615 0.00 0.00 0.00 3.07
1505 1593 8.535592 CATCGTATCAAACAAGAACTACTCATC 58.464 37.037 0.00 0.00 0.00 2.92
1506 1594 8.035394 ACATCGTATCAAACAAGAACTACTCAT 58.965 33.333 0.00 0.00 0.00 2.90
1526 1614 3.937814 TGATCAAAGGCTAACACATCGT 58.062 40.909 0.00 0.00 0.00 3.73
1527 1615 6.603237 TTATGATCAAAGGCTAACACATCG 57.397 37.500 0.00 0.00 0.00 3.84
1573 1700 7.315890 CAGGAATTCCTTTTTACAGTCATTCC 58.684 38.462 24.93 0.00 46.09 3.01
1584 1711 3.324846 GGGTCTTGCAGGAATTCCTTTTT 59.675 43.478 24.93 0.50 46.09 1.94
1589 1716 1.546029 GTTGGGTCTTGCAGGAATTCC 59.454 52.381 17.31 17.31 0.00 3.01
1593 1720 1.140312 AGAGTTGGGTCTTGCAGGAA 58.860 50.000 0.00 0.00 0.00 3.36
1595 1722 1.625818 ACTAGAGTTGGGTCTTGCAGG 59.374 52.381 0.00 0.00 0.00 4.85
1596 1723 3.409026 AACTAGAGTTGGGTCTTGCAG 57.591 47.619 0.00 0.00 36.80 4.41
1597 1724 4.530553 TCATAACTAGAGTTGGGTCTTGCA 59.469 41.667 5.15 0.00 38.90 4.08
1599 1726 7.607991 ACAATTCATAACTAGAGTTGGGTCTTG 59.392 37.037 5.15 6.33 37.13 3.02
1600 1727 7.690256 ACAATTCATAACTAGAGTTGGGTCTT 58.310 34.615 5.15 0.00 37.13 3.01
1601 1728 7.038302 TGACAATTCATAACTAGAGTTGGGTCT 60.038 37.037 5.15 0.00 37.13 3.85
1602 1729 7.103641 TGACAATTCATAACTAGAGTTGGGTC 58.896 38.462 5.15 0.00 37.13 4.46
1603 1730 7.016153 TGACAATTCATAACTAGAGTTGGGT 57.984 36.000 5.15 0.00 37.13 4.51
1629 1756 9.863650 TGTAACAGAGCTAGGTAAGATACTTAT 57.136 33.333 0.00 0.00 0.00 1.73
1630 1757 9.118300 GTGTAACAGAGCTAGGTAAGATACTTA 57.882 37.037 0.00 0.00 36.32 2.24
1631 1758 7.068470 GGTGTAACAGAGCTAGGTAAGATACTT 59.932 40.741 0.00 0.00 39.98 2.24
1632 1759 6.546772 GGTGTAACAGAGCTAGGTAAGATACT 59.453 42.308 0.00 0.00 39.98 2.12
1633 1760 6.546772 AGGTGTAACAGAGCTAGGTAAGATAC 59.453 42.308 0.00 0.89 39.98 2.24
1634 1761 6.670617 AGGTGTAACAGAGCTAGGTAAGATA 58.329 40.000 0.00 0.00 39.98 1.98
1635 1762 5.520751 AGGTGTAACAGAGCTAGGTAAGAT 58.479 41.667 0.00 0.00 39.98 2.40
1636 1763 4.931914 AGGTGTAACAGAGCTAGGTAAGA 58.068 43.478 0.00 0.00 39.98 2.10
1637 1764 4.951094 AGAGGTGTAACAGAGCTAGGTAAG 59.049 45.833 0.00 0.00 39.98 2.34
1638 1765 4.705507 CAGAGGTGTAACAGAGCTAGGTAA 59.294 45.833 0.00 0.00 39.98 2.85
1639 1766 4.018688 TCAGAGGTGTAACAGAGCTAGGTA 60.019 45.833 0.00 0.00 39.98 3.08
1640 1767 3.093057 CAGAGGTGTAACAGAGCTAGGT 58.907 50.000 0.00 0.00 39.98 3.08
1641 1768 3.357203 TCAGAGGTGTAACAGAGCTAGG 58.643 50.000 0.00 0.00 39.98 3.02
1642 1769 6.058833 TCTATCAGAGGTGTAACAGAGCTAG 58.941 44.000 0.00 0.00 39.98 3.42
1643 1770 6.002653 TCTATCAGAGGTGTAACAGAGCTA 57.997 41.667 0.00 0.00 39.98 3.32
1644 1771 4.861196 TCTATCAGAGGTGTAACAGAGCT 58.139 43.478 0.00 0.00 39.98 4.09
1654 1781 4.397481 TGCTGAACATCTATCAGAGGTG 57.603 45.455 7.67 0.00 45.74 4.00
1655 1782 4.469227 AGTTGCTGAACATCTATCAGAGGT 59.531 41.667 7.67 0.00 45.74 3.85
1659 1786 5.691305 GCTCTAGTTGCTGAACATCTATCAG 59.309 44.000 0.00 0.00 45.65 2.90
1660 1787 5.362143 AGCTCTAGTTGCTGAACATCTATCA 59.638 40.000 11.10 0.00 39.56 2.15
1661 1788 5.841810 AGCTCTAGTTGCTGAACATCTATC 58.158 41.667 11.10 0.00 39.56 2.08
1662 1789 5.867903 AGCTCTAGTTGCTGAACATCTAT 57.132 39.130 11.10 0.00 39.56 1.98
1663 1790 6.968263 ATAGCTCTAGTTGCTGAACATCTA 57.032 37.500 18.37 2.09 41.32 1.98
1671 1798 7.386299 CCACCTTATTAATAGCTCTAGTTGCTG 59.614 40.741 18.37 5.63 41.32 4.41
1672 1799 7.290248 TCCACCTTATTAATAGCTCTAGTTGCT 59.710 37.037 15.00 15.00 43.79 3.91
1673 1800 7.442656 TCCACCTTATTAATAGCTCTAGTTGC 58.557 38.462 0.00 3.01 0.00 4.17
1674 1801 9.429359 CATCCACCTTATTAATAGCTCTAGTTG 57.571 37.037 0.00 0.00 0.00 3.16
1675 1802 9.381038 TCATCCACCTTATTAATAGCTCTAGTT 57.619 33.333 0.00 0.00 0.00 2.24
1676 1803 8.808092 GTCATCCACCTTATTAATAGCTCTAGT 58.192 37.037 0.00 0.00 0.00 2.57
1677 1804 9.030452 AGTCATCCACCTTATTAATAGCTCTAG 57.970 37.037 0.00 0.00 0.00 2.43
1678 1805 8.958060 AGTCATCCACCTTATTAATAGCTCTA 57.042 34.615 0.00 0.00 0.00 2.43
1679 1806 7.863901 AGTCATCCACCTTATTAATAGCTCT 57.136 36.000 0.00 0.00 0.00 4.09
1682 1809 6.072452 GCCAAGTCATCCACCTTATTAATAGC 60.072 42.308 0.00 0.00 0.00 2.97
1683 1810 7.173907 CAGCCAAGTCATCCACCTTATTAATAG 59.826 40.741 0.00 0.00 0.00 1.73
1700 1832 3.181487 ACATGTGAACAAACAGCCAAGTC 60.181 43.478 0.00 0.00 32.52 3.01
1707 1839 6.407475 TCGATGATACATGTGAACAAACAG 57.593 37.500 9.11 0.67 32.52 3.16
1711 1843 8.940768 TTAAGATCGATGATACATGTGAACAA 57.059 30.769 9.11 0.00 0.00 2.83
1739 1882 7.882791 TGCTTAGAACAGGATGAACATCTTAAA 59.117 33.333 13.34 0.99 39.69 1.52
1742 1885 5.809001 TGCTTAGAACAGGATGAACATCTT 58.191 37.500 13.34 4.41 39.69 2.40
1743 1886 5.046014 ACTGCTTAGAACAGGATGAACATCT 60.046 40.000 13.34 0.00 39.69 2.90
1745 1888 5.171339 ACTGCTTAGAACAGGATGAACAT 57.829 39.130 0.00 0.00 39.69 2.71
1750 1893 4.820897 TGTGTACTGCTTAGAACAGGATG 58.179 43.478 0.00 0.00 46.00 3.51
1759 1902 4.935205 TGGCTACAAATGTGTACTGCTTAG 59.065 41.667 7.10 0.00 39.30 2.18
1762 1905 3.338249 CTGGCTACAAATGTGTACTGCT 58.662 45.455 7.10 0.00 39.30 4.24
1764 1907 2.420022 GGCTGGCTACAAATGTGTACTG 59.580 50.000 0.00 0.00 39.30 2.74
1765 1908 2.305927 AGGCTGGCTACAAATGTGTACT 59.694 45.455 0.13 0.00 39.30 2.73
1767 1910 3.433306 AAGGCTGGCTACAAATGTGTA 57.567 42.857 3.41 0.00 39.30 2.90
1768 1911 2.292828 AAGGCTGGCTACAAATGTGT 57.707 45.000 3.41 0.00 42.09 3.72
1769 1912 3.758554 ACTAAAGGCTGGCTACAAATGTG 59.241 43.478 3.41 0.00 0.00 3.21
1770 1913 3.758554 CACTAAAGGCTGGCTACAAATGT 59.241 43.478 3.41 0.00 0.00 2.71
1772 1915 4.301072 TCACTAAAGGCTGGCTACAAAT 57.699 40.909 3.41 0.00 0.00 2.32
1777 1920 3.519510 ACTTCATCACTAAAGGCTGGCTA 59.480 43.478 3.41 0.00 0.00 3.93
1793 1936 4.459337 GCCCTGCACTAACTAAAACTTCAT 59.541 41.667 0.00 0.00 0.00 2.57
1795 1938 3.818773 TGCCCTGCACTAACTAAAACTTC 59.181 43.478 0.00 0.00 31.71 3.01
1802 1945 3.835978 TCTTAACTGCCCTGCACTAACTA 59.164 43.478 0.00 0.00 33.79 2.24
1804 1947 3.053831 TCTTAACTGCCCTGCACTAAC 57.946 47.619 0.00 0.00 33.79 2.34
1816 1959 9.661187 GAGCAATATGACAATCAATCTTAACTG 57.339 33.333 0.00 0.00 0.00 3.16
1821 1964 7.774157 AGTGAGAGCAATATGACAATCAATCTT 59.226 33.333 0.00 0.00 0.00 2.40
1822 1965 7.226918 CAGTGAGAGCAATATGACAATCAATCT 59.773 37.037 0.00 0.00 0.00 2.40
1836 1979 7.846066 ACTTATAAGAAGACAGTGAGAGCAAT 58.154 34.615 19.38 0.00 0.00 3.56
1837 1980 7.233389 ACTTATAAGAAGACAGTGAGAGCAA 57.767 36.000 19.38 0.00 0.00 3.91
1844 1987 8.988934 TGTGCTTTAACTTATAAGAAGACAGTG 58.011 33.333 19.38 0.00 0.00 3.66
1845 1988 9.726438 ATGTGCTTTAACTTATAAGAAGACAGT 57.274 29.630 19.38 0.00 0.00 3.55
1863 2006 7.880195 ACACTTACTAAATGAGAGATGTGCTTT 59.120 33.333 0.00 0.00 0.00 3.51
1881 2026 7.880195 AGATGCAGAAGAAACATAACACTTACT 59.120 33.333 0.00 0.00 0.00 2.24
1883 2028 7.877612 TCAGATGCAGAAGAAACATAACACTTA 59.122 33.333 0.00 0.00 0.00 2.24
1884 2029 6.712095 TCAGATGCAGAAGAAACATAACACTT 59.288 34.615 0.00 0.00 0.00 3.16
1885 2030 6.233434 TCAGATGCAGAAGAAACATAACACT 58.767 36.000 0.00 0.00 0.00 3.55
1886 2031 6.486253 TCAGATGCAGAAGAAACATAACAC 57.514 37.500 0.00 0.00 0.00 3.32
1889 2034 9.842775 ATCTTATCAGATGCAGAAGAAACATAA 57.157 29.630 0.00 0.00 38.44 1.90
1891 2036 8.749026 AATCTTATCAGATGCAGAAGAAACAT 57.251 30.769 0.00 0.00 39.00 2.71
1892 2037 8.045507 AGAATCTTATCAGATGCAGAAGAAACA 58.954 33.333 0.00 0.00 39.00 2.83
1893 2038 8.336806 CAGAATCTTATCAGATGCAGAAGAAAC 58.663 37.037 0.00 0.00 39.00 2.78
1902 2063 7.783090 TTCAAGACAGAATCTTATCAGATGC 57.217 36.000 0.00 0.00 46.52 3.91
1925 2088 4.331968 TCACACTCCAGTTGTCTGTTTTT 58.668 39.130 0.00 0.00 39.82 1.94
1926 2089 3.950397 TCACACTCCAGTTGTCTGTTTT 58.050 40.909 0.00 0.00 39.82 2.43
2060 2225 7.925483 GGATATGCTGGCACATTTTATTAACAA 59.075 33.333 7.65 0.00 38.20 2.83
2271 2480 6.818644 GTCTGCCTCTCAACATAGAAACATAA 59.181 38.462 0.00 0.00 0.00 1.90
2285 2494 4.797800 GCATCATATAGTCTGCCTCTCA 57.202 45.455 0.00 0.00 0.00 3.27
2297 2506 8.739039 GCAAATAACATAACCAGGCATCATATA 58.261 33.333 0.00 0.00 0.00 0.86
2399 2610 5.858049 CGTCACAAATAGCACATTGAACAAT 59.142 36.000 2.89 0.00 0.00 2.71
2433 2644 9.695526 CCAAAGATCTCATATTGAAACAACAAA 57.304 29.630 6.46 0.00 33.44 2.83
2434 2645 8.859090 ACCAAAGATCTCATATTGAAACAACAA 58.141 29.630 6.46 0.00 0.00 2.83
2454 2665 8.586570 TTACATGCATAAAAACTTGACCAAAG 57.413 30.769 0.00 0.00 42.07 2.77
2459 2670 9.503427 GGTCTATTACATGCATAAAAACTTGAC 57.497 33.333 0.00 1.97 0.00 3.18
2467 2678 8.785946 CATGTCATGGTCTATTACATGCATAAA 58.214 33.333 9.69 0.00 41.72 1.40
2484 2695 4.383444 ACTATGTGAGTGACCATGTCATGG 60.383 45.833 27.31 27.31 46.47 3.66
2519 2730 2.287915 GGACCTGCACAGCGTAAATATG 59.712 50.000 0.00 0.00 0.00 1.78
2565 2776 5.125900 TGAACCATTGAGCTATTCACATTGG 59.874 40.000 10.25 10.25 40.38 3.16
2598 2809 4.582701 ATGTTGGAACTCAAAATGCGAA 57.417 36.364 0.00 0.00 37.08 4.70
2600 2811 4.050553 ACAATGTTGGAACTCAAAATGCG 58.949 39.130 0.00 0.00 33.75 4.73
2615 2826 6.112734 TCTGTTCTGTGTACAAGACAATGTT 58.887 36.000 0.00 0.00 40.66 2.71
2616 2827 5.670485 TCTGTTCTGTGTACAAGACAATGT 58.330 37.500 0.00 0.00 40.66 2.71
2625 2836 5.791336 ACAATCTCTCTGTTCTGTGTACA 57.209 39.130 0.00 0.00 0.00 2.90
2626 2837 6.754209 CCATACAATCTCTCTGTTCTGTGTAC 59.246 42.308 0.00 0.00 0.00 2.90
2631 2844 6.047870 CCTTCCATACAATCTCTCTGTTCTG 58.952 44.000 0.00 0.00 0.00 3.02
2658 2871 5.357742 AACAAAGCTGGGAAACTCAAAAT 57.642 34.783 0.00 0.00 0.00 1.82
2668 2881 4.787551 TGAGTTAGAAAACAAAGCTGGGA 58.212 39.130 0.00 0.00 38.12 4.37
2670 2883 7.035612 AGTTTTGAGTTAGAAAACAAAGCTGG 58.964 34.615 0.00 0.00 43.03 4.85
2674 2887 9.207042 GTACGAGTTTTGAGTTAGAAAACAAAG 57.793 33.333 0.00 0.00 43.03 2.77
2677 2890 7.223387 GGAGTACGAGTTTTGAGTTAGAAAACA 59.777 37.037 0.00 0.00 43.03 2.83
2682 2895 5.075493 AGGGAGTACGAGTTTTGAGTTAGA 58.925 41.667 0.00 0.00 0.00 2.10
2694 2907 1.742761 TACAACGGAGGGAGTACGAG 58.257 55.000 0.00 0.00 0.00 4.18
2697 2910 5.485620 AGAATTTTACAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
2698 2911 5.750352 AGAATTTTACAACGGAGGGAGTA 57.250 39.130 0.00 0.00 0.00 2.59
2699 2912 4.635699 AGAATTTTACAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
2700 2913 4.760204 ACAAGAATTTTACAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
2701 2914 4.721132 ACAAGAATTTTACAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
2702 2915 4.760204 AGACAAGAATTTTACAACGGAGGG 59.240 41.667 0.00 0.00 0.00 4.30
2703 2916 5.941948 AGACAAGAATTTTACAACGGAGG 57.058 39.130 0.00 0.00 0.00 4.30
2704 2917 8.557029 AGTTAAGACAAGAATTTTACAACGGAG 58.443 33.333 0.00 0.00 0.00 4.63
2705 2918 8.441312 AGTTAAGACAAGAATTTTACAACGGA 57.559 30.769 0.00 0.00 0.00 4.69
2738 2951 8.848182 TCAAAGAAGCATGGCAAAATAATTTTT 58.152 25.926 0.00 0.00 35.41 1.94
2739 2952 8.393671 TCAAAGAAGCATGGCAAAATAATTTT 57.606 26.923 0.00 0.00 0.00 1.82
2740 2953 7.982761 TCAAAGAAGCATGGCAAAATAATTT 57.017 28.000 0.00 0.00 0.00 1.82
2741 2954 7.094677 GGTTCAAAGAAGCATGGCAAAATAATT 60.095 33.333 0.00 0.00 0.00 1.40
2742 2955 6.372381 GGTTCAAAGAAGCATGGCAAAATAAT 59.628 34.615 0.00 0.00 0.00 1.28
2743 2956 5.700373 GGTTCAAAGAAGCATGGCAAAATAA 59.300 36.000 0.00 0.00 0.00 1.40
2744 2957 5.011943 AGGTTCAAAGAAGCATGGCAAAATA 59.988 36.000 11.00 0.00 0.00 1.40
2745 2958 4.067192 GGTTCAAAGAAGCATGGCAAAAT 58.933 39.130 0.00 0.00 0.00 1.82
2746 2959 3.134442 AGGTTCAAAGAAGCATGGCAAAA 59.866 39.130 11.00 0.00 0.00 2.44
2747 2960 2.699846 AGGTTCAAAGAAGCATGGCAAA 59.300 40.909 11.00 0.00 0.00 3.68
2748 2961 2.036217 CAGGTTCAAAGAAGCATGGCAA 59.964 45.455 11.00 0.00 0.00 4.52
2749 2962 1.614903 CAGGTTCAAAGAAGCATGGCA 59.385 47.619 11.00 0.00 0.00 4.92
2750 2963 1.670967 GCAGGTTCAAAGAAGCATGGC 60.671 52.381 11.00 7.76 0.00 4.40
2751 2964 1.891150 AGCAGGTTCAAAGAAGCATGG 59.109 47.619 11.00 2.40 0.00 3.66
2752 2965 4.978083 ATAGCAGGTTCAAAGAAGCATG 57.022 40.909 11.00 7.54 0.00 4.06
2753 2966 4.768968 ACAATAGCAGGTTCAAAGAAGCAT 59.231 37.500 11.00 0.57 0.00 3.79
2754 2967 4.022935 CACAATAGCAGGTTCAAAGAAGCA 60.023 41.667 11.00 0.00 0.00 3.91
2755 2968 4.022849 ACACAATAGCAGGTTCAAAGAAGC 60.023 41.667 0.97 0.97 0.00 3.86
2756 2969 5.239306 TCACACAATAGCAGGTTCAAAGAAG 59.761 40.000 0.00 0.00 0.00 2.85
2757 2970 5.129634 TCACACAATAGCAGGTTCAAAGAA 58.870 37.500 0.00 0.00 0.00 2.52
2758 2971 4.713553 TCACACAATAGCAGGTTCAAAGA 58.286 39.130 0.00 0.00 0.00 2.52
2759 2972 5.633830 ATCACACAATAGCAGGTTCAAAG 57.366 39.130 0.00 0.00 0.00 2.77
2760 2973 6.403866 AAATCACACAATAGCAGGTTCAAA 57.596 33.333 0.00 0.00 0.00 2.69
2761 2974 6.349280 GCTAAATCACACAATAGCAGGTTCAA 60.349 38.462 0.00 0.00 40.32 2.69
2762 2975 5.123820 GCTAAATCACACAATAGCAGGTTCA 59.876 40.000 0.00 0.00 40.32 3.18
2763 2976 5.449177 GGCTAAATCACACAATAGCAGGTTC 60.449 44.000 6.05 0.00 41.93 3.62
2764 2977 4.399303 GGCTAAATCACACAATAGCAGGTT 59.601 41.667 6.05 0.00 41.93 3.50
2765 2978 3.947834 GGCTAAATCACACAATAGCAGGT 59.052 43.478 6.05 0.00 41.93 4.00
2766 2979 3.002656 CGGCTAAATCACACAATAGCAGG 59.997 47.826 6.05 0.00 41.93 4.85
2767 2980 3.623060 ACGGCTAAATCACACAATAGCAG 59.377 43.478 6.05 4.46 41.93 4.24
2768 2981 3.605634 ACGGCTAAATCACACAATAGCA 58.394 40.909 6.05 0.00 41.93 3.49
2769 2982 4.318831 GCTACGGCTAAATCACACAATAGC 60.319 45.833 0.00 0.00 39.96 2.97
2770 2983 5.330271 GCTACGGCTAAATCACACAATAG 57.670 43.478 0.00 0.00 35.22 1.73
2785 2998 1.134965 AGATGAACACTGAGCTACGGC 60.135 52.381 0.00 0.00 39.06 5.68
2786 2999 2.949451 AGATGAACACTGAGCTACGG 57.051 50.000 0.00 0.00 0.00 4.02
2787 3000 4.449068 ACAAAAGATGAACACTGAGCTACG 59.551 41.667 0.00 0.00 0.00 3.51
2788 3001 5.931441 ACAAAAGATGAACACTGAGCTAC 57.069 39.130 0.00 0.00 0.00 3.58
2789 3002 7.715249 ACTTAACAAAAGATGAACACTGAGCTA 59.285 33.333 0.00 0.00 0.00 3.32
2790 3003 6.543831 ACTTAACAAAAGATGAACACTGAGCT 59.456 34.615 0.00 0.00 0.00 4.09
2791 3004 6.729187 ACTTAACAAAAGATGAACACTGAGC 58.271 36.000 0.00 0.00 0.00 4.26
2793 3006 9.778741 AGATACTTAACAAAAGATGAACACTGA 57.221 29.630 0.00 0.00 0.00 3.41
2808 3021 9.244292 ACAGTGATCTACTCAAGATACTTAACA 57.756 33.333 0.00 0.00 45.35 2.41
2809 3022 9.724839 GACAGTGATCTACTCAAGATACTTAAC 57.275 37.037 0.00 0.00 45.35 2.01
2810 3023 9.462606 TGACAGTGATCTACTCAAGATACTTAA 57.537 33.333 0.00 0.00 45.35 1.85
2811 3024 9.634021 ATGACAGTGATCTACTCAAGATACTTA 57.366 33.333 0.00 0.00 45.35 2.24
2812 3025 7.946381 TGACAGTGATCTACTCAAGATACTT 57.054 36.000 0.00 0.00 45.35 2.24
2813 3026 7.559533 ACATGACAGTGATCTACTCAAGATACT 59.440 37.037 0.00 0.00 45.35 2.12
2814 3027 7.711846 ACATGACAGTGATCTACTCAAGATAC 58.288 38.462 0.00 0.00 45.35 2.24
2815 3028 7.888250 ACATGACAGTGATCTACTCAAGATA 57.112 36.000 0.00 0.00 45.35 1.98
2817 3030 7.888250 ATACATGACAGTGATCTACTCAAGA 57.112 36.000 0.00 0.00 37.60 3.02
2818 3031 8.939201 AAATACATGACAGTGATCTACTCAAG 57.061 34.615 0.00 0.00 37.60 3.02
2819 3032 9.154847 CAAAATACATGACAGTGATCTACTCAA 57.845 33.333 0.00 0.00 37.60 3.02
2820 3033 8.314021 ACAAAATACATGACAGTGATCTACTCA 58.686 33.333 0.00 0.00 37.60 3.41
2821 3034 8.709386 ACAAAATACATGACAGTGATCTACTC 57.291 34.615 0.00 0.00 37.60 2.59
2822 3035 8.939929 CAACAAAATACATGACAGTGATCTACT 58.060 33.333 0.00 0.00 41.36 2.57
2823 3036 7.693951 GCAACAAAATACATGACAGTGATCTAC 59.306 37.037 0.00 0.00 0.00 2.59
2824 3037 7.607607 AGCAACAAAATACATGACAGTGATCTA 59.392 33.333 0.00 0.00 0.00 1.98
2825 3038 6.432162 AGCAACAAAATACATGACAGTGATCT 59.568 34.615 0.00 0.00 0.00 2.75
2826 3039 6.615088 AGCAACAAAATACATGACAGTGATC 58.385 36.000 0.00 0.00 0.00 2.92
2827 3040 6.579666 AGCAACAAAATACATGACAGTGAT 57.420 33.333 0.00 0.00 0.00 3.06
2828 3041 7.174772 ACATAGCAACAAAATACATGACAGTGA 59.825 33.333 0.00 0.00 0.00 3.41
2829 3042 7.307694 ACATAGCAACAAAATACATGACAGTG 58.692 34.615 0.00 0.00 0.00 3.66
2830 3043 7.452880 ACATAGCAACAAAATACATGACAGT 57.547 32.000 0.00 0.00 0.00 3.55
2831 3044 9.494479 CTAACATAGCAACAAAATACATGACAG 57.506 33.333 0.00 0.00 0.00 3.51
2832 3045 9.225436 TCTAACATAGCAACAAAATACATGACA 57.775 29.630 0.00 0.00 0.00 3.58
2833 3046 9.708222 CTCTAACATAGCAACAAAATACATGAC 57.292 33.333 0.00 0.00 0.00 3.06
2834 3047 9.448438 ACTCTAACATAGCAACAAAATACATGA 57.552 29.630 0.00 0.00 0.00 3.07
2835 3048 9.494479 CACTCTAACATAGCAACAAAATACATG 57.506 33.333 0.00 0.00 0.00 3.21
2836 3049 8.184192 GCACTCTAACATAGCAACAAAATACAT 58.816 33.333 0.00 0.00 0.00 2.29
2837 3050 7.174080 TGCACTCTAACATAGCAACAAAATACA 59.826 33.333 0.00 0.00 31.42 2.29
2838 3051 7.526608 TGCACTCTAACATAGCAACAAAATAC 58.473 34.615 0.00 0.00 31.42 1.89
2839 3052 7.390440 ACTGCACTCTAACATAGCAACAAAATA 59.610 33.333 0.00 0.00 34.45 1.40
2840 3053 6.207417 ACTGCACTCTAACATAGCAACAAAAT 59.793 34.615 0.00 0.00 34.45 1.82
2841 3054 5.530915 ACTGCACTCTAACATAGCAACAAAA 59.469 36.000 0.00 0.00 34.45 2.44
2842 3055 5.049474 CACTGCACTCTAACATAGCAACAAA 60.049 40.000 0.00 0.00 34.45 2.83
2843 3056 4.452114 CACTGCACTCTAACATAGCAACAA 59.548 41.667 0.00 0.00 34.45 2.83
2844 3057 3.996363 CACTGCACTCTAACATAGCAACA 59.004 43.478 0.00 0.00 34.45 3.33
2845 3058 3.997021 ACACTGCACTCTAACATAGCAAC 59.003 43.478 0.00 0.00 34.45 4.17
2846 3059 4.021104 AGACACTGCACTCTAACATAGCAA 60.021 41.667 0.00 0.00 34.45 3.91
2847 3060 3.511540 AGACACTGCACTCTAACATAGCA 59.488 43.478 0.00 0.00 0.00 3.49
2848 3061 4.116747 AGACACTGCACTCTAACATAGC 57.883 45.455 0.00 0.00 0.00 2.97
2849 3062 7.316640 AGTTAAGACACTGCACTCTAACATAG 58.683 38.462 0.00 0.00 0.00 2.23
2850 3063 7.228314 AGTTAAGACACTGCACTCTAACATA 57.772 36.000 0.00 0.00 0.00 2.29
2851 3064 6.102897 AGTTAAGACACTGCACTCTAACAT 57.897 37.500 0.00 0.00 0.00 2.71
2852 3065 5.531122 AGTTAAGACACTGCACTCTAACA 57.469 39.130 0.00 0.00 0.00 2.41
2853 3066 7.368833 TCTTAGTTAAGACACTGCACTCTAAC 58.631 38.462 0.00 0.00 37.40 2.34
2854 3067 7.520451 TCTTAGTTAAGACACTGCACTCTAA 57.480 36.000 0.00 0.00 37.40 2.10
2882 3095 5.690865 TGTACTCCCTCAGTCACAATTTTT 58.309 37.500 0.00 0.00 36.43 1.94
2883 3096 5.304686 TGTACTCCCTCAGTCACAATTTT 57.695 39.130 0.00 0.00 36.43 1.82
2884 3097 4.974645 TGTACTCCCTCAGTCACAATTT 57.025 40.909 0.00 0.00 36.43 1.82
2885 3098 4.974645 TTGTACTCCCTCAGTCACAATT 57.025 40.909 0.00 0.00 36.43 2.32
2886 3099 4.287067 ACATTGTACTCCCTCAGTCACAAT 59.713 41.667 0.00 0.00 38.50 2.71
2887 3100 3.646162 ACATTGTACTCCCTCAGTCACAA 59.354 43.478 0.00 0.00 36.43 3.33
2888 3101 3.239449 ACATTGTACTCCCTCAGTCACA 58.761 45.455 0.00 0.00 36.43 3.58
2889 3102 3.963428 ACATTGTACTCCCTCAGTCAC 57.037 47.619 0.00 0.00 36.43 3.67
2890 3103 5.330233 TCTAACATTGTACTCCCTCAGTCA 58.670 41.667 0.00 0.00 36.43 3.41
2891 3104 5.916661 TCTAACATTGTACTCCCTCAGTC 57.083 43.478 0.00 0.00 36.43 3.51
2892 3105 6.875972 AATCTAACATTGTACTCCCTCAGT 57.124 37.500 0.00 0.00 39.41 3.41
2893 3106 8.567285 AAAAATCTAACATTGTACTCCCTCAG 57.433 34.615 0.00 0.00 0.00 3.35
2894 3107 9.667107 CTAAAAATCTAACATTGTACTCCCTCA 57.333 33.333 0.00 0.00 0.00 3.86
2895 3108 8.613482 GCTAAAAATCTAACATTGTACTCCCTC 58.387 37.037 0.00 0.00 0.00 4.30
2896 3109 8.107095 TGCTAAAAATCTAACATTGTACTCCCT 58.893 33.333 0.00 0.00 0.00 4.20
2897 3110 8.276252 TGCTAAAAATCTAACATTGTACTCCC 57.724 34.615 0.00 0.00 0.00 4.30
2921 3134 7.917505 ACAGTTTAGCTCTTCAAACAAAGAATG 59.082 33.333 11.40 3.73 37.16 2.67
2953 3166 7.147811 ACCAAAATAAAGTGTGAGCCAAGTTAA 60.148 33.333 0.00 0.00 0.00 2.01
2954 3167 6.322712 ACCAAAATAAAGTGTGAGCCAAGTTA 59.677 34.615 0.00 0.00 0.00 2.24
2955 3168 5.128663 ACCAAAATAAAGTGTGAGCCAAGTT 59.871 36.000 0.00 0.00 0.00 2.66
2956 3169 4.649218 ACCAAAATAAAGTGTGAGCCAAGT 59.351 37.500 0.00 0.00 0.00 3.16
2957 3170 4.984161 CACCAAAATAAAGTGTGAGCCAAG 59.016 41.667 0.00 0.00 0.00 3.61
2958 3171 4.739137 GCACCAAAATAAAGTGTGAGCCAA 60.739 41.667 0.00 0.00 33.96 4.52
2959 3172 3.243704 GCACCAAAATAAAGTGTGAGCCA 60.244 43.478 0.00 0.00 33.96 4.75
2960 3173 3.243704 TGCACCAAAATAAAGTGTGAGCC 60.244 43.478 0.00 0.00 33.96 4.70
2961 3174 3.976169 TGCACCAAAATAAAGTGTGAGC 58.024 40.909 0.00 0.00 33.96 4.26
2962 3175 5.239306 TCTCTGCACCAAAATAAAGTGTGAG 59.761 40.000 0.00 0.00 36.50 3.51
2963 3176 5.129634 TCTCTGCACCAAAATAAAGTGTGA 58.870 37.500 0.00 0.00 33.96 3.58
2964 3177 5.437289 TCTCTGCACCAAAATAAAGTGTG 57.563 39.130 0.00 0.00 33.96 3.82
2965 3178 5.183904 GGATCTCTGCACCAAAATAAAGTGT 59.816 40.000 0.00 0.00 33.96 3.55
2966 3179 5.183713 TGGATCTCTGCACCAAAATAAAGTG 59.816 40.000 0.00 0.00 34.58 3.16
2967 3180 5.324409 TGGATCTCTGCACCAAAATAAAGT 58.676 37.500 0.00 0.00 0.00 2.66
2968 3181 5.902613 TGGATCTCTGCACCAAAATAAAG 57.097 39.130 0.00 0.00 0.00 1.85
2969 3182 6.662865 TTTGGATCTCTGCACCAAAATAAA 57.337 33.333 14.24 0.00 46.22 1.40
2975 3188 6.211587 CAATATTTTGGATCTCTGCACCAA 57.788 37.500 1.76 1.76 41.12 3.67
2976 3189 5.840243 CAATATTTTGGATCTCTGCACCA 57.160 39.130 0.00 0.00 0.00 4.17
3018 3231 6.693978 TCCGAGATGTAATACAAATGTGTACG 59.306 38.462 0.00 0.00 42.99 3.67
3033 3246 6.654959 TGGGTTTGATATTTTCCGAGATGTA 58.345 36.000 0.00 0.00 0.00 2.29
3034 3247 5.505780 TGGGTTTGATATTTTCCGAGATGT 58.494 37.500 0.00 0.00 0.00 3.06
3106 3319 2.259439 CGAGGCGGTATAGCGACCT 61.259 63.158 28.25 28.25 37.34 3.85
3107 3320 2.254651 CGAGGCGGTATAGCGACC 59.745 66.667 25.73 23.60 38.18 4.79
3108 3321 2.403671 AAGCGAGGCGGTATAGCGAC 62.404 60.000 27.26 24.91 36.27 5.19
3154 3399 9.667107 CCAACTCACATTTTTATAGGAGTAGAA 57.333 33.333 0.00 0.00 34.75 2.10
3161 3406 6.370442 TCGTCACCAACTCACATTTTTATAGG 59.630 38.462 0.00 0.00 0.00 2.57
3169 3414 2.224523 ACCATCGTCACCAACTCACATT 60.225 45.455 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.