Multiple sequence alignment - TraesCS6A01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G360900 chr6A 100.000 3292 0 0 1 3292 591727256 591730547 0.000000e+00 6080.0
1 TraesCS6A01G360900 chr6D 88.529 2005 118 57 710 2642 444132022 444133986 0.000000e+00 2326.0
2 TraesCS6A01G360900 chr6D 83.678 484 38 18 249 716 444131526 444131984 5.080000e-113 418.0
3 TraesCS6A01G360900 chr6D 81.495 281 23 6 2877 3155 444134415 444134668 1.550000e-48 204.0
4 TraesCS6A01G360900 chr6D 86.207 145 11 5 2732 2867 444134224 444134368 7.360000e-32 148.0
5 TraesCS6A01G360900 chr6D 87.500 112 7 4 79 190 444131402 444131506 4.460000e-24 122.0
6 TraesCS6A01G360900 chr6B 87.416 1494 108 36 710 2175 668772350 668773791 0.000000e+00 1644.0
7 TraesCS6A01G360900 chr6B 85.017 594 35 28 79 655 668771683 668772239 3.710000e-154 555.0
8 TraesCS6A01G360900 chr6B 78.166 458 40 29 2207 2621 668773791 668774231 1.530000e-58 237.0
9 TraesCS6A01G360900 chr6B 100.000 55 0 0 27 81 668771596 668771650 5.810000e-18 102.0
10 TraesCS6A01G360900 chr3A 85.992 721 50 31 2032 2717 193127009 193126305 0.000000e+00 725.0
11 TraesCS6A01G360900 chr3A 95.604 91 4 0 2735 2825 193126183 193126093 2.650000e-31 147.0
12 TraesCS6A01G360900 chr5A 84.958 718 52 32 2034 2716 278172708 278173404 0.000000e+00 676.0
13 TraesCS6A01G360900 chr5A 95.604 91 4 0 2735 2825 278173527 278173617 2.650000e-31 147.0
14 TraesCS6A01G360900 chr1D 89.697 165 16 1 1349 1512 163675171 163675007 3.330000e-50 209.0
15 TraesCS6A01G360900 chr3D 93.478 92 5 1 1419 1509 16901522 16901613 5.730000e-28 135.0
16 TraesCS6A01G360900 chr1B 90.909 44 4 0 1306 1349 49709000 49709043 3.550000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G360900 chr6A 591727256 591730547 3291 False 6080.0 6080 100.00000 1 3292 1 chr6A.!!$F1 3291
1 TraesCS6A01G360900 chr6D 444131402 444134668 3266 False 643.6 2326 85.48180 79 3155 5 chr6D.!!$F1 3076
2 TraesCS6A01G360900 chr6B 668771596 668774231 2635 False 634.5 1644 87.64975 27 2621 4 chr6B.!!$F1 2594
3 TraesCS6A01G360900 chr3A 193126093 193127009 916 True 436.0 725 90.79800 2032 2825 2 chr3A.!!$R1 793
4 TraesCS6A01G360900 chr5A 278172708 278173617 909 False 411.5 676 90.28100 2034 2825 2 chr5A.!!$F1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 267 0.108520 TCGTACCACCGAAAGATGCC 60.109 55.0 0.00 0.0 33.15 4.40 F
1889 2044 0.040958 CTCTGCACCGAAGCAACAAC 60.041 55.0 3.45 0.0 45.13 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2296 0.029300 CGAACCAAACACCTGTGCAG 59.971 55.0 0.0 0.0 0.0 4.41 R
2965 3439 0.035458 CCTCGAAGGTTCAAGTGGCT 59.965 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.719778 AAAGAAAAGGCAAGCTGAAATTTAG 57.280 32.000 0.00 0.00 0.00 1.85
145 181 2.358737 CAGGTCCACGGAAGGTGC 60.359 66.667 0.00 0.00 45.62 5.01
147 183 3.637273 GGTCCACGGAAGGTGCCT 61.637 66.667 0.00 0.00 45.62 4.75
149 185 3.691342 TCCACGGAAGGTGCCTCG 61.691 66.667 0.00 0.00 45.62 4.63
179 215 9.109393 AGCATAACATAATCCGCGAATAATATT 57.891 29.630 8.23 0.00 0.00 1.28
180 216 9.370126 GCATAACATAATCCGCGAATAATATTC 57.630 33.333 8.23 3.00 0.00 1.75
216 252 4.868734 CCAAAGAAAGATACCACTCGTACC 59.131 45.833 0.00 0.00 0.00 3.34
229 267 0.108520 TCGTACCACCGAAAGATGCC 60.109 55.000 0.00 0.00 33.15 4.40
307 348 6.398095 TCATCAATTATATCAGCCACGGTAG 58.602 40.000 0.00 0.00 0.00 3.18
308 349 5.147330 TCAATTATATCAGCCACGGTAGG 57.853 43.478 0.00 0.00 0.00 3.18
309 350 4.591498 TCAATTATATCAGCCACGGTAGGT 59.409 41.667 0.00 0.00 0.00 3.08
344 385 0.660595 AGAATCGATAAGGACGCGCG 60.661 55.000 30.96 30.96 0.00 6.86
345 386 1.606350 GAATCGATAAGGACGCGCGG 61.606 60.000 35.22 16.31 0.00 6.46
346 387 3.553437 ATCGATAAGGACGCGCGGG 62.553 63.158 35.22 22.69 0.00 6.13
414 457 2.802667 CGACGCCACAGCTGTATGC 61.803 63.158 21.20 22.78 43.29 3.14
444 489 2.358737 CACTCCCCCACTTGCGTC 60.359 66.667 0.00 0.00 0.00 5.19
479 524 1.490693 CGTCAACTGTGCTGCGTCTT 61.491 55.000 0.00 0.00 0.00 3.01
482 527 0.378257 CAACTGTGCTGCGTCTTTGT 59.622 50.000 0.00 0.00 0.00 2.83
591 642 1.067846 TCACGTCTCTCCATTTCACCG 60.068 52.381 0.00 0.00 0.00 4.94
610 661 1.194121 GCACCTTTGCCCCCAGAAAT 61.194 55.000 0.00 0.00 43.66 2.17
612 663 1.194121 ACCTTTGCCCCCAGAAATGC 61.194 55.000 0.00 0.00 0.00 3.56
625 676 3.129287 CCAGAAATGCCCACTATTCACAC 59.871 47.826 0.00 0.00 0.00 3.82
637 688 0.114954 ATTCACACCCCAACTGCCAT 59.885 50.000 0.00 0.00 0.00 4.40
639 690 2.034066 ACACCCCAACTGCCATCG 59.966 61.111 0.00 0.00 0.00 3.84
640 691 2.751436 CACCCCAACTGCCATCGG 60.751 66.667 0.00 0.00 0.00 4.18
641 692 2.933287 ACCCCAACTGCCATCGGA 60.933 61.111 0.00 0.00 0.00 4.55
673 739 0.532115 GGAATTTCACGCAAGCCCAT 59.468 50.000 0.00 0.00 45.62 4.00
736 846 6.127479 ACGTCAGAGCAATAAAGATCTCTTCT 60.127 38.462 0.00 0.00 33.99 2.85
739 849 6.382282 TCAGAGCAATAAAGATCTCTTCTCCA 59.618 38.462 0.00 0.00 33.99 3.86
909 1036 1.482177 CCATTGTTTCCTCCCCCACAA 60.482 52.381 0.00 0.00 33.78 3.33
913 1040 1.786441 TGTTTCCTCCCCCACAAATCT 59.214 47.619 0.00 0.00 0.00 2.40
915 1042 1.753903 TTCCTCCCCCACAAATCTCA 58.246 50.000 0.00 0.00 0.00 3.27
916 1043 1.985622 TCCTCCCCCACAAATCTCAT 58.014 50.000 0.00 0.00 0.00 2.90
917 1044 1.846439 TCCTCCCCCACAAATCTCATC 59.154 52.381 0.00 0.00 0.00 2.92
918 1045 1.849039 CCTCCCCCACAAATCTCATCT 59.151 52.381 0.00 0.00 0.00 2.90
943 1074 0.465097 TCGCTAGGGTTAGGTCTCCG 60.465 60.000 6.70 0.00 0.00 4.63
944 1075 1.453762 CGCTAGGGTTAGGTCTCCGG 61.454 65.000 0.00 0.00 0.00 5.14
945 1076 1.746322 GCTAGGGTTAGGTCTCCGGC 61.746 65.000 0.00 0.00 0.00 6.13
946 1077 1.453762 CTAGGGTTAGGTCTCCGGCG 61.454 65.000 0.00 0.00 0.00 6.46
1031 1176 0.605589 CTCGATCTAGTCCCATGGCC 59.394 60.000 6.09 0.00 0.00 5.36
1205 1359 1.302511 GGCTCTTTTGGCGTCTCCA 60.303 57.895 0.00 0.00 44.85 3.86
1301 1455 4.722700 GAGAAGCCCCGGCAGCAA 62.723 66.667 16.07 0.00 44.88 3.91
1337 1491 2.893398 GTCCGGATCCTCAAGCGT 59.107 61.111 7.81 0.00 0.00 5.07
1509 1663 4.423209 GGTCTCCTCCCCCAGCCT 62.423 72.222 0.00 0.00 0.00 4.58
1511 1665 4.465446 TCTCCTCCCCCAGCCTCG 62.465 72.222 0.00 0.00 0.00 4.63
1521 1675 2.028190 CAGCCTCGGCACCTATCG 59.972 66.667 11.02 0.00 44.88 2.92
1522 1676 3.917760 AGCCTCGGCACCTATCGC 61.918 66.667 11.02 0.00 44.88 4.58
1524 1678 3.900892 CCTCGGCACCTATCGCGT 61.901 66.667 5.77 0.00 0.00 6.01
1649 1803 1.889105 CGCCATCGCAACCAGCTAT 60.889 57.895 0.00 0.00 42.61 2.97
1862 2016 2.287427 TCCCTCCTCCCCCTCGTA 60.287 66.667 0.00 0.00 0.00 3.43
1865 2019 1.542175 CCTCCTCCCCCTCGTATCA 59.458 63.158 0.00 0.00 0.00 2.15
1868 2022 2.201022 CCTCCCCCTCGTATCACCG 61.201 68.421 0.00 0.00 0.00 4.94
1870 2024 3.925090 CCCCCTCGTATCACCGCC 61.925 72.222 0.00 0.00 0.00 6.13
1874 2028 1.360551 CCTCGTATCACCGCCTCTG 59.639 63.158 0.00 0.00 0.00 3.35
1876 2030 2.004808 CTCGTATCACCGCCTCTGCA 62.005 60.000 0.00 0.00 37.32 4.41
1878 2033 1.521681 GTATCACCGCCTCTGCACC 60.522 63.158 0.00 0.00 37.32 5.01
1889 2044 0.040958 CTCTGCACCGAAGCAACAAC 60.041 55.000 3.45 0.00 45.13 3.32
1903 2058 3.629398 AGCAACAACAAGAAGAAGAGGTG 59.371 43.478 0.00 0.00 0.00 4.00
1904 2059 3.243201 GCAACAACAAGAAGAAGAGGTGG 60.243 47.826 0.00 0.00 0.00 4.61
1905 2060 3.933861 ACAACAAGAAGAAGAGGTGGT 57.066 42.857 0.00 0.00 0.00 4.16
1906 2061 3.545703 ACAACAAGAAGAAGAGGTGGTG 58.454 45.455 0.00 0.00 33.07 4.17
1907 2062 2.880890 CAACAAGAAGAAGAGGTGGTGG 59.119 50.000 0.00 0.00 0.00 4.61
1908 2063 2.127708 ACAAGAAGAAGAGGTGGTGGT 58.872 47.619 0.00 0.00 0.00 4.16
1938 2093 2.938428 ACTCTCCCTGACTGAAGGAT 57.062 50.000 3.24 0.00 40.02 3.24
1963 2118 5.532779 GGAAGGATTTTATCTGTGGATGGTC 59.467 44.000 0.00 0.00 33.71 4.02
2115 2273 2.673114 TTGCTTTAGGTTCGCGCGG 61.673 57.895 31.69 12.28 0.00 6.46
2166 2335 2.202566 GCCTTGATGTCGTTAGGTAGC 58.797 52.381 0.00 0.00 0.00 3.58
2191 2360 5.547465 TGTTAATTGTCGGTCAGTCAGAAT 58.453 37.500 0.00 0.00 0.00 2.40
2225 2401 3.602483 GTTCTTGGTTTAGGTGGCGATA 58.398 45.455 0.00 0.00 0.00 2.92
2261 2437 1.133792 AGTGGGTCTCAGGTTTGGTTG 60.134 52.381 0.00 0.00 0.00 3.77
2270 2446 1.682854 CAGGTTTGGTTGCAGTGATGT 59.317 47.619 0.00 0.00 0.00 3.06
2323 2534 4.262079 GGGTCGAAGGTATGAGTTATGAGG 60.262 50.000 0.00 0.00 0.00 3.86
2324 2535 4.341520 GGTCGAAGGTATGAGTTATGAGGT 59.658 45.833 0.00 0.00 0.00 3.85
2325 2536 5.533903 GGTCGAAGGTATGAGTTATGAGGTA 59.466 44.000 0.00 0.00 0.00 3.08
2328 2539 8.142551 GTCGAAGGTATGAGTTATGAGGTAAAT 58.857 37.037 0.00 0.00 0.00 1.40
2330 2541 9.976511 CGAAGGTATGAGTTATGAGGTAAATTA 57.023 33.333 0.00 0.00 0.00 1.40
2566 2812 8.363390 TGGTAGATTATATGAGCTCTTGTCTTG 58.637 37.037 16.19 0.00 0.00 3.02
2642 2888 3.685058 GTTGAACTTGCACAACAGTCTC 58.315 45.455 11.78 3.39 43.66 3.36
2643 2889 3.266510 TGAACTTGCACAACAGTCTCT 57.733 42.857 0.00 0.00 0.00 3.10
2644 2890 4.400529 TGAACTTGCACAACAGTCTCTA 57.599 40.909 0.00 0.00 0.00 2.43
2646 2892 3.113260 ACTTGCACAACAGTCTCTACC 57.887 47.619 0.00 0.00 0.00 3.18
2647 2893 2.700897 ACTTGCACAACAGTCTCTACCT 59.299 45.455 0.00 0.00 0.00 3.08
2651 2904 2.668834 GCACAACAGTCTCTACCTCGAC 60.669 54.545 0.00 0.00 0.00 4.20
2671 2924 6.971602 TCGACATCTCTACCTTTATGATGAC 58.028 40.000 8.05 1.92 38.21 3.06
2688 2941 4.042062 TGATGACCCCCATTATGATCTGAC 59.958 45.833 0.00 0.00 35.17 3.51
2717 2970 9.725019 TTGATATCCACCAGTGATGAAATATAC 57.275 33.333 0.00 0.00 0.00 1.47
2720 2973 5.368145 TCCACCAGTGATGAAATATACTGC 58.632 41.667 0.00 0.00 39.15 4.40
2722 2975 5.824624 CCACCAGTGATGAAATATACTGCTT 59.175 40.000 0.00 0.00 39.15 3.91
2723 2976 6.319658 CCACCAGTGATGAAATATACTGCTTT 59.680 38.462 0.00 0.00 39.15 3.51
2724 2977 7.412853 CACCAGTGATGAAATATACTGCTTTC 58.587 38.462 0.00 0.00 39.15 2.62
2725 2978 7.281774 CACCAGTGATGAAATATACTGCTTTCT 59.718 37.037 0.00 0.00 39.15 2.52
2727 2980 9.330063 CCAGTGATGAAATATACTGCTTTCTTA 57.670 33.333 0.00 0.00 39.15 2.10
2729 2982 9.553064 AGTGATGAAATATACTGCTTTCTTAGG 57.447 33.333 0.00 0.00 33.50 2.69
2730 2983 9.547753 GTGATGAAATATACTGCTTTCTTAGGA 57.452 33.333 0.00 0.00 33.50 2.94
2733 3160 8.090788 TGAAATATACTGCTTTCTTAGGAGGT 57.909 34.615 0.00 0.00 45.89 3.85
2741 3168 2.112279 TTCTTAGGAGGTGGTGGTGT 57.888 50.000 0.00 0.00 0.00 4.16
2807 3237 1.135094 ATCATACTCCACCAGCCAGG 58.865 55.000 0.00 0.00 45.67 4.45
2825 3260 3.493350 CCAGGCGTGTTAGCTGATTATCT 60.493 47.826 5.57 0.00 37.29 1.98
2837 3272 9.250624 GTTAGCTGATTATCTACACCTAACTTG 57.749 37.037 0.00 0.00 34.79 3.16
2838 3273 6.821388 AGCTGATTATCTACACCTAACTTGG 58.179 40.000 0.00 0.00 0.00 3.61
2843 3278 2.897350 TCTACACCTAACTTGGCTGGA 58.103 47.619 0.00 0.00 0.00 3.86
2851 3286 3.379372 CCTAACTTGGCTGGATGTTGATG 59.621 47.826 0.00 0.00 0.00 3.07
2852 3287 1.180029 ACTTGGCTGGATGTTGATGC 58.820 50.000 0.00 0.00 0.00 3.91
2857 3292 1.337071 GGCTGGATGTTGATGCATCAG 59.663 52.381 27.25 15.96 45.11 2.90
2858 3293 1.269102 GCTGGATGTTGATGCATCAGC 60.269 52.381 30.20 30.20 45.11 4.26
2860 3295 1.341187 TGGATGTTGATGCATCAGCCA 60.341 47.619 32.46 28.70 44.09 4.75
2862 3297 2.480759 GGATGTTGATGCATCAGCCAAC 60.481 50.000 32.46 25.37 45.11 3.77
2863 3298 1.618487 TGTTGATGCATCAGCCAACA 58.382 45.000 32.46 27.27 44.81 3.33
2865 3300 2.288334 TGTTGATGCATCAGCCAACAAC 60.288 45.455 32.46 23.85 44.38 3.32
2867 3302 0.179156 GATGCATCAGCCAACAACCG 60.179 55.000 21.92 0.00 41.13 4.44
2868 3303 0.895100 ATGCATCAGCCAACAACCGT 60.895 50.000 0.00 0.00 41.13 4.83
2869 3304 0.250510 TGCATCAGCCAACAACCGTA 60.251 50.000 0.00 0.00 41.13 4.02
2870 3305 1.094785 GCATCAGCCAACAACCGTAT 58.905 50.000 0.00 0.00 33.58 3.06
2871 3306 1.202177 GCATCAGCCAACAACCGTATG 60.202 52.381 0.00 0.00 33.58 2.39
2872 3307 2.355197 CATCAGCCAACAACCGTATGA 58.645 47.619 0.00 0.00 0.00 2.15
2874 3309 0.447801 CAGCCAACAACCGTATGAGC 59.552 55.000 0.00 0.00 0.00 4.26
2875 3310 0.324943 AGCCAACAACCGTATGAGCT 59.675 50.000 0.00 0.00 0.00 4.09
2888 3361 4.038042 CCGTATGAGCTGGAGAAGAATACA 59.962 45.833 0.00 0.00 0.00 2.29
2915 3389 3.020984 TCAGTTTGGTTGACCCAGAAAC 58.979 45.455 0.00 2.59 46.31 2.78
2920 3394 0.673985 GGTTGACCCAGAAACTTGCC 59.326 55.000 0.00 0.00 0.00 4.52
2958 3432 2.049433 CGAGCCGAAACTCCGTGT 60.049 61.111 0.00 0.00 32.79 4.49
2962 3436 2.668280 GCCGAAACTCCGTGTGCTC 61.668 63.158 0.00 0.00 0.00 4.26
2965 3439 0.937699 CGAAACTCCGTGTGCTCGAA 60.938 55.000 0.00 0.00 37.14 3.71
2984 3458 0.035458 AGCCACTTGAACCTTCGAGG 59.965 55.000 7.14 0.03 41.96 4.63
2993 3467 3.059982 CCTTCGAGGTGTCTGGCA 58.940 61.111 0.00 0.00 0.00 4.92
2994 3468 1.371183 CCTTCGAGGTGTCTGGCAA 59.629 57.895 0.00 0.00 0.00 4.52
2995 3469 0.250295 CCTTCGAGGTGTCTGGCAAA 60.250 55.000 0.00 0.00 0.00 3.68
2996 3470 1.593196 CTTCGAGGTGTCTGGCAAAA 58.407 50.000 0.00 0.00 0.00 2.44
2997 3471 1.532868 CTTCGAGGTGTCTGGCAAAAG 59.467 52.381 0.00 0.00 0.00 2.27
2998 3472 0.884704 TCGAGGTGTCTGGCAAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
2999 3473 0.886490 CGAGGTGTCTGGCAAAAGCT 60.886 55.000 0.00 0.00 0.00 3.74
3000 3474 1.322442 GAGGTGTCTGGCAAAAGCTT 58.678 50.000 0.00 0.00 0.00 3.74
3001 3475 1.683385 GAGGTGTCTGGCAAAAGCTTT 59.317 47.619 5.69 5.69 0.00 3.51
3021 3495 1.227380 GCTCCGATCAGCCGTGAAT 60.227 57.895 0.00 0.00 35.88 2.57
3044 3518 1.734477 CGTGGTTGCCGTCTCTCAG 60.734 63.158 0.00 0.00 0.00 3.35
3045 3519 1.374758 GTGGTTGCCGTCTCTCAGG 60.375 63.158 0.00 0.00 0.00 3.86
3046 3520 2.266055 GGTTGCCGTCTCTCAGGG 59.734 66.667 0.00 0.00 0.00 4.45
3047 3521 2.266055 GTTGCCGTCTCTCAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
3048 3522 3.706373 TTGCCGTCTCTCAGGGGC 61.706 66.667 0.00 0.00 45.76 5.80
3050 3524 4.154347 GCCGTCTCTCAGGGGCAG 62.154 72.222 0.00 0.00 44.91 4.85
3051 3525 4.154347 CCGTCTCTCAGGGGCAGC 62.154 72.222 0.00 0.00 0.00 5.25
3052 3526 3.385384 CGTCTCTCAGGGGCAGCA 61.385 66.667 0.00 0.00 0.00 4.41
3053 3527 2.583520 GTCTCTCAGGGGCAGCAG 59.416 66.667 0.00 0.00 0.00 4.24
3054 3528 1.986757 GTCTCTCAGGGGCAGCAGA 60.987 63.158 0.00 0.00 0.00 4.26
3055 3529 1.685077 TCTCTCAGGGGCAGCAGAG 60.685 63.158 0.00 0.00 34.75 3.35
3060 3534 3.095163 AGGGGCAGCAGAGGGATG 61.095 66.667 0.00 0.00 35.52 3.51
3064 3538 1.228184 GGCAGCAGAGGGATGGATG 60.228 63.158 0.00 0.00 32.19 3.51
3096 3570 0.608035 TCCCGTTGTCAATCAAGGCC 60.608 55.000 0.00 0.00 39.63 5.19
3098 3572 1.501741 CGTTGTCAATCAAGGCCGG 59.498 57.895 0.00 0.00 36.66 6.13
3157 3631 2.508928 CCGACCCTGTGTTGGTGT 59.491 61.111 0.00 0.00 42.85 4.16
3158 3632 1.153046 CCGACCCTGTGTTGGTGTT 60.153 57.895 0.00 0.00 42.85 3.32
3159 3633 1.444119 CCGACCCTGTGTTGGTGTTG 61.444 60.000 0.00 0.00 42.85 3.33
3160 3634 1.444119 CGACCCTGTGTTGGTGTTGG 61.444 60.000 0.00 0.00 35.85 3.77
3161 3635 1.734388 GACCCTGTGTTGGTGTTGGC 61.734 60.000 0.00 0.00 35.85 4.52
3162 3636 2.498056 CCCTGTGTTGGTGTTGGCC 61.498 63.158 0.00 0.00 0.00 5.36
3163 3637 2.721231 CTGTGTTGGTGTTGGCCG 59.279 61.111 0.00 0.00 0.00 6.13
3164 3638 2.830827 TGTGTTGGTGTTGGCCGG 60.831 61.111 0.00 0.00 0.00 6.13
3165 3639 2.831284 GTGTTGGTGTTGGCCGGT 60.831 61.111 1.90 0.00 0.00 5.28
3166 3640 2.830827 TGTTGGTGTTGGCCGGTG 60.831 61.111 1.90 0.00 0.00 4.94
3167 3641 2.517402 GTTGGTGTTGGCCGGTGA 60.517 61.111 1.90 0.00 0.00 4.02
3168 3642 1.901464 GTTGGTGTTGGCCGGTGAT 60.901 57.895 1.90 0.00 0.00 3.06
3169 3643 0.606944 GTTGGTGTTGGCCGGTGATA 60.607 55.000 1.90 0.00 0.00 2.15
3170 3644 0.110678 TTGGTGTTGGCCGGTGATAA 59.889 50.000 1.90 0.00 0.00 1.75
3171 3645 0.606944 TGGTGTTGGCCGGTGATAAC 60.607 55.000 1.90 4.36 0.00 1.89
3172 3646 0.606944 GGTGTTGGCCGGTGATAACA 60.607 55.000 1.90 7.07 0.00 2.41
3173 3647 1.240256 GTGTTGGCCGGTGATAACAA 58.760 50.000 1.90 0.00 35.12 2.83
3174 3648 1.816224 GTGTTGGCCGGTGATAACAAT 59.184 47.619 1.90 0.00 35.12 2.71
3175 3649 2.088423 TGTTGGCCGGTGATAACAATC 58.912 47.619 1.90 0.00 30.81 2.67
3176 3650 1.404035 GTTGGCCGGTGATAACAATCC 59.596 52.381 1.90 0.00 0.00 3.01
3177 3651 0.106918 TGGCCGGTGATAACAATCCC 60.107 55.000 1.90 0.00 0.00 3.85
3178 3652 0.106918 GGCCGGTGATAACAATCCCA 60.107 55.000 1.90 0.00 0.00 4.37
3179 3653 1.683629 GGCCGGTGATAACAATCCCAA 60.684 52.381 1.90 0.00 0.00 4.12
3180 3654 1.404035 GCCGGTGATAACAATCCCAAC 59.596 52.381 1.90 0.00 0.00 3.77
3181 3655 2.944094 GCCGGTGATAACAATCCCAACT 60.944 50.000 1.90 0.00 0.00 3.16
3182 3656 3.683281 GCCGGTGATAACAATCCCAACTA 60.683 47.826 1.90 0.00 0.00 2.24
3183 3657 3.875134 CCGGTGATAACAATCCCAACTAC 59.125 47.826 0.00 0.00 0.00 2.73
3184 3658 3.554324 CGGTGATAACAATCCCAACTACG 59.446 47.826 0.00 0.00 0.00 3.51
3185 3659 4.510571 GGTGATAACAATCCCAACTACGT 58.489 43.478 0.00 0.00 0.00 3.57
3186 3660 5.663456 GGTGATAACAATCCCAACTACGTA 58.337 41.667 0.00 0.00 0.00 3.57
3187 3661 5.521372 GGTGATAACAATCCCAACTACGTAC 59.479 44.000 0.00 0.00 0.00 3.67
3188 3662 5.230726 GTGATAACAATCCCAACTACGTACG 59.769 44.000 15.01 15.01 0.00 3.67
3189 3663 3.665745 AACAATCCCAACTACGTACGT 57.334 42.857 25.98 25.98 0.00 3.57
3190 3664 3.665745 ACAATCCCAACTACGTACGTT 57.334 42.857 27.92 6.48 0.00 3.99
3191 3665 3.993920 ACAATCCCAACTACGTACGTTT 58.006 40.909 27.92 13.13 0.00 3.60
3192 3666 3.742369 ACAATCCCAACTACGTACGTTTG 59.258 43.478 27.92 23.62 0.00 2.93
3193 3667 3.940209 ATCCCAACTACGTACGTTTGA 57.060 42.857 27.92 10.99 0.00 2.69
3194 3668 3.724508 TCCCAACTACGTACGTTTGAA 57.275 42.857 27.92 13.61 0.00 2.69
3195 3669 3.641648 TCCCAACTACGTACGTTTGAAG 58.358 45.455 27.92 19.51 0.00 3.02
3196 3670 2.156310 CCCAACTACGTACGTTTGAAGC 59.844 50.000 27.92 0.00 0.00 3.86
3197 3671 3.054878 CCAACTACGTACGTTTGAAGCT 58.945 45.455 27.92 6.09 0.00 3.74
3198 3672 3.121126 CCAACTACGTACGTTTGAAGCTG 60.121 47.826 27.92 17.72 0.00 4.24
3199 3673 2.669364 ACTACGTACGTTTGAAGCTGG 58.331 47.619 27.92 2.98 0.00 4.85
3200 3674 1.990563 CTACGTACGTTTGAAGCTGGG 59.009 52.381 27.92 0.98 0.00 4.45
3201 3675 1.226030 ACGTACGTTTGAAGCTGGGC 61.226 55.000 16.72 0.00 0.00 5.36
3202 3676 1.225376 CGTACGTTTGAAGCTGGGCA 61.225 55.000 7.22 0.00 0.00 5.36
3203 3677 0.948678 GTACGTTTGAAGCTGGGCAA 59.051 50.000 0.00 0.00 0.00 4.52
3204 3678 1.069227 GTACGTTTGAAGCTGGGCAAG 60.069 52.381 0.00 0.00 0.00 4.01
3205 3679 0.465460 ACGTTTGAAGCTGGGCAAGA 60.465 50.000 0.00 0.00 0.00 3.02
3206 3680 0.883833 CGTTTGAAGCTGGGCAAGAT 59.116 50.000 0.00 0.00 0.00 2.40
3207 3681 1.401931 CGTTTGAAGCTGGGCAAGATG 60.402 52.381 0.00 0.00 0.00 2.90
3208 3682 1.888512 GTTTGAAGCTGGGCAAGATGA 59.111 47.619 0.00 0.00 0.00 2.92
3209 3683 2.494870 GTTTGAAGCTGGGCAAGATGAT 59.505 45.455 0.00 0.00 0.00 2.45
3210 3684 2.048444 TGAAGCTGGGCAAGATGATC 57.952 50.000 0.00 0.00 0.00 2.92
3211 3685 1.282738 TGAAGCTGGGCAAGATGATCA 59.717 47.619 0.00 0.00 0.00 2.92
3212 3686 2.092049 TGAAGCTGGGCAAGATGATCAT 60.092 45.455 8.25 8.25 0.00 2.45
3213 3687 2.750141 AGCTGGGCAAGATGATCATT 57.250 45.000 10.14 0.00 0.00 2.57
3214 3688 3.028094 AGCTGGGCAAGATGATCATTT 57.972 42.857 10.14 0.28 0.00 2.32
3215 3689 2.693591 AGCTGGGCAAGATGATCATTTG 59.306 45.455 10.14 15.64 0.00 2.32
3216 3690 2.223971 GCTGGGCAAGATGATCATTTGG 60.224 50.000 21.58 12.44 0.00 3.28
3217 3691 1.758280 TGGGCAAGATGATCATTTGGC 59.242 47.619 28.75 28.75 44.01 4.52
3218 3692 2.037144 GGGCAAGATGATCATTTGGCT 58.963 47.619 31.56 17.44 44.13 4.75
3219 3693 2.433239 GGGCAAGATGATCATTTGGCTT 59.567 45.455 31.56 20.75 44.13 4.35
3220 3694 3.454375 GGCAAGATGATCATTTGGCTTG 58.546 45.455 29.03 25.82 42.20 4.01
3221 3695 3.131577 GGCAAGATGATCATTTGGCTTGA 59.868 43.478 29.03 0.00 42.20 3.02
3222 3696 4.382254 GGCAAGATGATCATTTGGCTTGAA 60.382 41.667 29.03 0.00 42.20 2.69
3223 3697 5.172934 GCAAGATGATCATTTGGCTTGAAA 58.827 37.500 26.90 0.00 35.89 2.69
3224 3698 5.640357 GCAAGATGATCATTTGGCTTGAAAA 59.360 36.000 26.90 0.00 35.89 2.29
3225 3699 6.315393 GCAAGATGATCATTTGGCTTGAAAAT 59.685 34.615 26.90 0.00 35.89 1.82
3226 3700 7.676338 GCAAGATGATCATTTGGCTTGAAAATG 60.676 37.037 26.90 9.71 43.38 2.32
3227 3701 6.942976 AGATGATCATTTGGCTTGAAAATGT 58.057 32.000 10.14 0.00 42.83 2.71
3228 3702 8.070034 AGATGATCATTTGGCTTGAAAATGTA 57.930 30.769 10.14 0.00 42.83 2.29
3229 3703 8.533657 AGATGATCATTTGGCTTGAAAATGTAA 58.466 29.630 10.14 0.00 42.83 2.41
3230 3704 8.712285 ATGATCATTTGGCTTGAAAATGTAAG 57.288 30.769 1.18 0.00 42.83 2.34
3231 3705 6.591062 TGATCATTTGGCTTGAAAATGTAAGC 59.409 34.615 8.31 0.00 46.45 3.09
3239 3713 6.768029 GCTTGAAAATGTAAGCACAATTCA 57.232 33.333 0.00 5.29 46.43 2.57
3240 3714 6.814343 GCTTGAAAATGTAAGCACAATTCAG 58.186 36.000 0.00 5.70 46.43 3.02
3241 3715 6.642131 GCTTGAAAATGTAAGCACAATTCAGA 59.358 34.615 0.00 0.00 46.43 3.27
3242 3716 7.358683 GCTTGAAAATGTAAGCACAATTCAGAC 60.359 37.037 0.00 3.71 46.43 3.51
3243 3717 7.275888 TGAAAATGTAAGCACAATTCAGACT 57.724 32.000 5.29 0.00 38.55 3.24
3244 3718 7.715657 TGAAAATGTAAGCACAATTCAGACTT 58.284 30.769 5.29 0.00 38.55 3.01
3245 3719 7.648908 TGAAAATGTAAGCACAATTCAGACTTG 59.351 33.333 0.00 0.00 38.55 3.16
3246 3720 6.882610 AATGTAAGCACAATTCAGACTTGA 57.117 33.333 7.48 0.00 38.42 3.02
3247 3721 6.882610 ATGTAAGCACAATTCAGACTTGAA 57.117 33.333 7.48 0.00 40.96 2.69
3260 3734 7.504924 TTCAGACTTGAATAAAACCAATCGT 57.495 32.000 0.00 0.00 38.37 3.73
3261 3735 7.129109 TCAGACTTGAATAAAACCAATCGTC 57.871 36.000 0.00 0.00 0.00 4.20
3262 3736 6.015504 CAGACTTGAATAAAACCAATCGTCG 58.984 40.000 0.00 0.00 0.00 5.12
3263 3737 5.121768 AGACTTGAATAAAACCAATCGTCGG 59.878 40.000 0.00 0.00 0.00 4.79
3264 3738 4.998672 ACTTGAATAAAACCAATCGTCGGA 59.001 37.500 0.00 0.00 0.00 4.55
3265 3739 5.121768 ACTTGAATAAAACCAATCGTCGGAG 59.878 40.000 0.00 0.00 0.00 4.63
3266 3740 3.936453 TGAATAAAACCAATCGTCGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
3267 3741 3.899052 ATAAAACCAATCGTCGGAGGA 57.101 42.857 2.53 2.53 0.00 3.71
3268 3742 2.781681 AAAACCAATCGTCGGAGGAT 57.218 45.000 7.35 7.35 0.00 3.24
3269 3743 2.781681 AAACCAATCGTCGGAGGATT 57.218 45.000 17.61 17.61 33.46 3.01
3270 3744 2.024176 AACCAATCGTCGGAGGATTG 57.976 50.000 31.66 31.66 45.17 2.67
3275 3749 3.819564 AATCGTCGGAGGATTGATTGA 57.180 42.857 21.34 0.00 32.18 2.57
3276 3750 2.871182 TCGTCGGAGGATTGATTGAG 57.129 50.000 0.00 0.00 0.00 3.02
3277 3751 2.100197 TCGTCGGAGGATTGATTGAGT 58.900 47.619 0.00 0.00 0.00 3.41
3278 3752 3.284617 TCGTCGGAGGATTGATTGAGTA 58.715 45.455 0.00 0.00 0.00 2.59
3279 3753 3.315470 TCGTCGGAGGATTGATTGAGTAG 59.685 47.826 0.00 0.00 0.00 2.57
3280 3754 3.551046 CGTCGGAGGATTGATTGAGTAGG 60.551 52.174 0.00 0.00 0.00 3.18
3281 3755 2.365617 TCGGAGGATTGATTGAGTAGGC 59.634 50.000 0.00 0.00 0.00 3.93
3282 3756 2.103094 CGGAGGATTGATTGAGTAGGCA 59.897 50.000 0.00 0.00 0.00 4.75
3283 3757 3.244353 CGGAGGATTGATTGAGTAGGCAT 60.244 47.826 0.00 0.00 0.00 4.40
3284 3758 4.322567 GGAGGATTGATTGAGTAGGCATC 58.677 47.826 0.00 0.00 0.00 3.91
3285 3759 4.202398 GGAGGATTGATTGAGTAGGCATCA 60.202 45.833 0.00 0.00 0.00 3.07
3286 3760 5.371526 GAGGATTGATTGAGTAGGCATCAA 58.628 41.667 2.89 2.89 40.72 2.57
3287 3761 5.128919 AGGATTGATTGAGTAGGCATCAAC 58.871 41.667 2.51 0.00 39.36 3.18
3288 3762 5.104193 AGGATTGATTGAGTAGGCATCAACT 60.104 40.000 2.51 0.00 39.36 3.16
3289 3763 5.008415 GGATTGATTGAGTAGGCATCAACTG 59.992 44.000 2.51 0.00 39.36 3.16
3290 3764 3.877559 TGATTGAGTAGGCATCAACTGG 58.122 45.455 2.51 0.00 39.36 4.00
3291 3765 3.264193 TGATTGAGTAGGCATCAACTGGT 59.736 43.478 2.51 0.00 39.36 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.227314 CCTAAATTTCAGCTTGCCTTTTCTTTT 59.773 33.333 0.00 0.00 0.00 2.27
1 2 6.707608 CCTAAATTTCAGCTTGCCTTTTCTTT 59.292 34.615 0.00 0.00 0.00 2.52
2 3 6.041979 TCCTAAATTTCAGCTTGCCTTTTCTT 59.958 34.615 0.00 0.00 0.00 2.52
3 4 5.539955 TCCTAAATTTCAGCTTGCCTTTTCT 59.460 36.000 0.00 0.00 0.00 2.52
4 5 5.783111 TCCTAAATTTCAGCTTGCCTTTTC 58.217 37.500 0.00 0.00 0.00 2.29
5 6 5.806654 TCCTAAATTTCAGCTTGCCTTTT 57.193 34.783 0.00 0.00 0.00 2.27
6 7 5.806654 TTCCTAAATTTCAGCTTGCCTTT 57.193 34.783 0.00 0.00 0.00 3.11
7 8 5.806654 TTTCCTAAATTTCAGCTTGCCTT 57.193 34.783 0.00 0.00 0.00 4.35
8 9 5.806654 TTTTCCTAAATTTCAGCTTGCCT 57.193 34.783 0.00 0.00 0.00 4.75
9 10 6.223120 TCTTTTTCCTAAATTTCAGCTTGCC 58.777 36.000 0.00 0.00 0.00 4.52
10 11 7.895975 ATCTTTTTCCTAAATTTCAGCTTGC 57.104 32.000 0.00 0.00 0.00 4.01
11 12 9.480053 TCAATCTTTTTCCTAAATTTCAGCTTG 57.520 29.630 0.00 0.00 0.00 4.01
12 13 9.481340 GTCAATCTTTTTCCTAAATTTCAGCTT 57.519 29.630 0.00 0.00 0.00 3.74
13 14 8.090831 GGTCAATCTTTTTCCTAAATTTCAGCT 58.909 33.333 0.00 0.00 0.00 4.24
14 15 7.872483 TGGTCAATCTTTTTCCTAAATTTCAGC 59.128 33.333 0.00 0.00 0.00 4.26
15 16 9.196552 GTGGTCAATCTTTTTCCTAAATTTCAG 57.803 33.333 0.00 0.00 0.00 3.02
16 17 7.865385 CGTGGTCAATCTTTTTCCTAAATTTCA 59.135 33.333 0.00 0.00 0.00 2.69
17 18 8.079809 TCGTGGTCAATCTTTTTCCTAAATTTC 58.920 33.333 0.00 0.00 0.00 2.17
18 19 7.865889 GTCGTGGTCAATCTTTTTCCTAAATTT 59.134 33.333 0.00 0.00 0.00 1.82
19 20 7.368059 GTCGTGGTCAATCTTTTTCCTAAATT 58.632 34.615 0.00 0.00 0.00 1.82
20 21 6.348213 CGTCGTGGTCAATCTTTTTCCTAAAT 60.348 38.462 0.00 0.00 0.00 1.40
21 22 5.049954 CGTCGTGGTCAATCTTTTTCCTAAA 60.050 40.000 0.00 0.00 0.00 1.85
22 23 4.449743 CGTCGTGGTCAATCTTTTTCCTAA 59.550 41.667 0.00 0.00 0.00 2.69
23 24 3.991773 CGTCGTGGTCAATCTTTTTCCTA 59.008 43.478 0.00 0.00 0.00 2.94
24 25 2.806244 CGTCGTGGTCAATCTTTTTCCT 59.194 45.455 0.00 0.00 0.00 3.36
25 26 2.546789 ACGTCGTGGTCAATCTTTTTCC 59.453 45.455 0.00 0.00 0.00 3.13
89 125 1.136169 GCCGCGATAAAAACAACTCGT 60.136 47.619 8.23 0.00 33.80 4.18
145 181 3.187227 GGATTATGTTATGCTGTGCGAGG 59.813 47.826 0.00 0.00 0.00 4.63
147 183 2.799978 CGGATTATGTTATGCTGTGCGA 59.200 45.455 0.00 0.00 0.00 5.10
149 185 2.662791 CGCGGATTATGTTATGCTGTGC 60.663 50.000 0.00 0.00 0.00 4.57
188 224 7.166167 ACGAGTGGTATCTTTCTTTGGTTATT 58.834 34.615 0.00 0.00 0.00 1.40
189 225 6.708285 ACGAGTGGTATCTTTCTTTGGTTAT 58.292 36.000 0.00 0.00 0.00 1.89
216 252 1.741401 TGCGAGGCATCTTTCGGTG 60.741 57.895 0.00 0.00 37.30 4.94
307 348 1.498865 CTCATTATCGCCGCACCACC 61.499 60.000 0.00 0.00 0.00 4.61
308 349 0.529773 TCTCATTATCGCCGCACCAC 60.530 55.000 0.00 0.00 0.00 4.16
309 350 0.176910 TTCTCATTATCGCCGCACCA 59.823 50.000 0.00 0.00 0.00 4.17
391 434 3.923864 AGCTGTGGCGTCGTTCCA 61.924 61.111 0.00 0.00 44.37 3.53
392 435 2.758770 TACAGCTGTGGCGTCGTTCC 62.759 60.000 29.57 0.00 44.37 3.62
393 436 0.736325 ATACAGCTGTGGCGTCGTTC 60.736 55.000 29.57 0.00 44.37 3.95
394 437 1.014044 CATACAGCTGTGGCGTCGTT 61.014 55.000 29.57 0.80 44.37 3.85
502 553 0.173481 GATAGGCACAGACAGACGCA 59.827 55.000 0.00 0.00 0.00 5.24
610 661 1.136961 TGGGGTGTGAATAGTGGGCA 61.137 55.000 0.00 0.00 0.00 5.36
612 663 1.354368 AGTTGGGGTGTGAATAGTGGG 59.646 52.381 0.00 0.00 0.00 4.61
625 676 2.438434 GTCCGATGGCAGTTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
655 721 1.632422 CATGGGCTTGCGTGAAATTC 58.368 50.000 0.00 0.00 0.00 2.17
679 745 0.687098 TATTGGCGAGGGTCGGGTAA 60.687 55.000 0.00 0.00 40.84 2.85
680 746 0.687098 TTATTGGCGAGGGTCGGGTA 60.687 55.000 0.00 0.00 40.84 3.69
685 751 1.226746 CCGAATTATTGGCGAGGGTC 58.773 55.000 0.00 0.00 0.00 4.46
719 829 7.042119 GCTTAGTGGAGAAGAGATCTTTATTGC 60.042 40.741 0.00 0.00 38.96 3.56
780 890 1.212441 ACCCTCTCCGACTCGAATAGT 59.788 52.381 0.00 0.00 42.80 2.12
839 953 7.515643 CCGCGTTTTATAGAAGAAGAAAGAAA 58.484 34.615 4.92 0.00 0.00 2.52
840 954 6.401796 GCCGCGTTTTATAGAAGAAGAAAGAA 60.402 38.462 4.92 0.00 0.00 2.52
841 955 5.063060 GCCGCGTTTTATAGAAGAAGAAAGA 59.937 40.000 4.92 0.00 0.00 2.52
842 956 5.256352 GCCGCGTTTTATAGAAGAAGAAAG 58.744 41.667 4.92 0.00 0.00 2.62
843 957 4.093850 GGCCGCGTTTTATAGAAGAAGAAA 59.906 41.667 4.92 0.00 0.00 2.52
898 1023 1.849039 AGATGAGATTTGTGGGGGAGG 59.151 52.381 0.00 0.00 0.00 4.30
909 1036 4.280677 CCCTAGCGAGAAGAAGATGAGATT 59.719 45.833 0.00 0.00 0.00 2.40
913 1040 3.019799 ACCCTAGCGAGAAGAAGATGA 57.980 47.619 0.00 0.00 0.00 2.92
915 1042 3.892588 CCTAACCCTAGCGAGAAGAAGAT 59.107 47.826 0.00 0.00 0.00 2.40
916 1043 3.288964 CCTAACCCTAGCGAGAAGAAGA 58.711 50.000 0.00 0.00 0.00 2.87
917 1044 3.025262 ACCTAACCCTAGCGAGAAGAAG 58.975 50.000 0.00 0.00 0.00 2.85
918 1045 3.022406 GACCTAACCCTAGCGAGAAGAA 58.978 50.000 0.00 0.00 0.00 2.52
985 1116 4.399395 TCGCTGCTTGGCTCAGGG 62.399 66.667 0.00 10.86 43.32 4.45
986 1117 2.818714 CTCGCTGCTTGGCTCAGG 60.819 66.667 0.00 0.00 32.41 3.86
987 1118 3.497932 GCTCGCTGCTTGGCTCAG 61.498 66.667 0.00 0.00 38.95 3.35
992 1123 3.267860 GATCCGCTCGCTGCTTGG 61.268 66.667 0.00 0.00 40.11 3.61
993 1124 3.267860 GGATCCGCTCGCTGCTTG 61.268 66.667 0.00 0.00 40.11 4.01
1031 1176 2.887568 GATCTGAGCACCGCCGTG 60.888 66.667 0.34 0.34 43.35 4.94
1271 1425 1.597461 CTTCTCCTTGGTCGGGGAC 59.403 63.158 0.00 0.00 31.92 4.46
1304 1458 1.592669 GACGGCCTCCATCACGATG 60.593 63.158 0.00 0.00 38.51 3.84
1509 1663 4.246206 CGACGCGATAGGTGCCGA 62.246 66.667 15.93 0.00 0.00 5.54
1613 1767 1.810151 GCGACTGGCACCATCTTTTTA 59.190 47.619 0.00 0.00 42.87 1.52
1616 1770 1.675641 GGCGACTGGCACCATCTTT 60.676 57.895 0.00 0.00 46.16 2.52
1703 1857 2.663196 CGCCGGAAGAAGAACCCT 59.337 61.111 5.05 0.00 0.00 4.34
1862 2016 4.457496 CGGTGCAGAGGCGGTGAT 62.457 66.667 0.00 0.00 45.35 3.06
1865 2019 4.379243 CTTCGGTGCAGAGGCGGT 62.379 66.667 0.00 0.00 45.35 5.68
1868 2022 2.669569 TTGCTTCGGTGCAGAGGC 60.670 61.111 3.42 3.42 44.27 4.70
1870 2024 0.040958 GTTGTTGCTTCGGTGCAGAG 60.041 55.000 0.00 0.00 44.27 3.35
1874 2028 0.380378 TCTTGTTGTTGCTTCGGTGC 59.620 50.000 0.00 0.00 0.00 5.01
1876 2030 2.639065 TCTTCTTGTTGTTGCTTCGGT 58.361 42.857 0.00 0.00 0.00 4.69
1878 2033 4.521943 CTCTTCTTCTTGTTGTTGCTTCG 58.478 43.478 0.00 0.00 0.00 3.79
1889 2044 2.498167 CACCACCACCTCTTCTTCTTG 58.502 52.381 0.00 0.00 0.00 3.02
1903 2058 3.370209 GGAGAGTTATTACCACCACCACC 60.370 52.174 0.00 0.00 0.00 4.61
1904 2059 3.370209 GGGAGAGTTATTACCACCACCAC 60.370 52.174 0.00 0.00 0.00 4.16
1905 2060 2.841881 GGGAGAGTTATTACCACCACCA 59.158 50.000 0.00 0.00 0.00 4.17
1906 2061 3.113043 AGGGAGAGTTATTACCACCACC 58.887 50.000 0.00 0.00 0.00 4.61
1907 2062 3.773119 TCAGGGAGAGTTATTACCACCAC 59.227 47.826 0.00 0.00 0.00 4.16
1908 2063 3.773119 GTCAGGGAGAGTTATTACCACCA 59.227 47.826 0.00 0.00 0.00 4.17
1938 2093 5.044179 ACCATCCACAGATAAAATCCTTCCA 60.044 40.000 0.00 0.00 0.00 3.53
1987 2142 0.179034 GATCTGATCCGGCCAAGCTT 60.179 55.000 2.24 0.00 0.00 3.74
2123 2292 1.299620 CAAACACCTGTGCAGCAGC 60.300 57.895 0.00 0.00 43.71 5.25
2124 2293 1.361271 CCAAACACCTGTGCAGCAG 59.639 57.895 0.00 8.73 44.63 4.24
2125 2294 0.969917 AACCAAACACCTGTGCAGCA 60.970 50.000 0.00 0.00 0.00 4.41
2126 2295 0.249031 GAACCAAACACCTGTGCAGC 60.249 55.000 0.00 0.00 0.00 5.25
2127 2296 0.029300 CGAACCAAACACCTGTGCAG 59.971 55.000 0.00 0.00 0.00 4.41
2128 2297 1.999071 GCGAACCAAACACCTGTGCA 61.999 55.000 0.00 0.00 0.00 4.57
2129 2298 1.299089 GCGAACCAAACACCTGTGC 60.299 57.895 0.00 0.00 0.00 4.57
2130 2299 1.101049 AGGCGAACCAAACACCTGTG 61.101 55.000 0.00 0.00 39.06 3.66
2131 2300 0.395173 AAGGCGAACCAAACACCTGT 60.395 50.000 0.00 0.00 39.06 4.00
2132 2301 0.030638 CAAGGCGAACCAAACACCTG 59.969 55.000 0.00 0.00 39.06 4.00
2133 2302 0.106918 TCAAGGCGAACCAAACACCT 60.107 50.000 0.00 0.00 39.06 4.00
2134 2303 0.958822 ATCAAGGCGAACCAAACACC 59.041 50.000 0.00 0.00 39.06 4.16
2135 2304 1.336755 ACATCAAGGCGAACCAAACAC 59.663 47.619 0.00 0.00 39.06 3.32
2166 2335 4.988540 TCTGACTGACCGACAATTAACAAG 59.011 41.667 0.00 0.00 0.00 3.16
2191 2360 4.463050 ACCAAGAACCAACCCTTAATCA 57.537 40.909 0.00 0.00 0.00 2.57
2225 2401 2.683768 CCACTCCCTAGCTACCAGATT 58.316 52.381 0.00 0.00 0.00 2.40
2270 2446 9.335891 CACGCACACATAAACTTCAATTATTAA 57.664 29.630 0.00 0.00 0.00 1.40
2341 2554 5.435686 TGATGCAACTACCTCCATACTTT 57.564 39.130 0.00 0.00 0.00 2.66
2343 2556 4.655649 TGATGATGCAACTACCTCCATACT 59.344 41.667 0.00 0.00 0.00 2.12
2347 2560 2.420547 GCTGATGATGCAACTACCTCCA 60.421 50.000 0.00 0.00 0.00 3.86
2349 2562 2.871022 CAGCTGATGATGCAACTACCTC 59.129 50.000 8.42 0.00 0.00 3.85
2457 2679 6.228258 TGACCATGAACAACTCTTACCTAAC 58.772 40.000 0.00 0.00 0.00 2.34
2531 2776 8.744652 AGCTCATATAATCTACCACTGACATAC 58.255 37.037 0.00 0.00 0.00 2.39
2566 2812 5.587443 TGATGATCACACACCATCAAGATTC 59.413 40.000 0.00 0.00 42.33 2.52
2642 2888 6.711194 TCATAAAGGTAGAGATGTCGAGGTAG 59.289 42.308 0.00 0.00 0.00 3.18
2643 2889 6.598503 TCATAAAGGTAGAGATGTCGAGGTA 58.401 40.000 0.00 0.00 0.00 3.08
2644 2890 5.446860 TCATAAAGGTAGAGATGTCGAGGT 58.553 41.667 0.00 0.00 0.00 3.85
2646 2892 7.081349 GTCATCATAAAGGTAGAGATGTCGAG 58.919 42.308 0.00 0.00 37.80 4.04
2647 2893 6.016192 GGTCATCATAAAGGTAGAGATGTCGA 60.016 42.308 0.00 0.00 37.80 4.20
2651 2904 5.280215 GGGGGTCATCATAAAGGTAGAGATG 60.280 48.000 0.00 0.00 37.90 2.90
2671 2924 5.387788 TCAATTGTCAGATCATAATGGGGG 58.612 41.667 5.13 0.00 0.00 5.40
2688 2941 6.947644 TTCATCACTGGTGGATATCAATTG 57.052 37.500 4.83 0.00 0.00 2.32
2717 2970 2.616510 CCACCACCTCCTAAGAAAGCAG 60.617 54.545 0.00 0.00 0.00 4.24
2720 2973 2.372172 ACACCACCACCTCCTAAGAAAG 59.628 50.000 0.00 0.00 0.00 2.62
2722 2975 2.105821 CAACACCACCACCTCCTAAGAA 59.894 50.000 0.00 0.00 0.00 2.52
2723 2976 1.697432 CAACACCACCACCTCCTAAGA 59.303 52.381 0.00 0.00 0.00 2.10
2724 2977 1.697432 TCAACACCACCACCTCCTAAG 59.303 52.381 0.00 0.00 0.00 2.18
2725 2978 1.809133 TCAACACCACCACCTCCTAA 58.191 50.000 0.00 0.00 0.00 2.69
2727 2980 1.149101 AATCAACACCACCACCTCCT 58.851 50.000 0.00 0.00 0.00 3.69
2728 2981 1.202879 TCAATCAACACCACCACCTCC 60.203 52.381 0.00 0.00 0.00 4.30
2729 2982 2.270352 TCAATCAACACCACCACCTC 57.730 50.000 0.00 0.00 0.00 3.85
2730 2983 2.746279 TTCAATCAACACCACCACCT 57.254 45.000 0.00 0.00 0.00 4.00
2733 3160 1.617850 GGCATTCAATCAACACCACCA 59.382 47.619 0.00 0.00 0.00 4.17
2807 3237 4.444720 GGTGTAGATAATCAGCTAACACGC 59.555 45.833 0.00 0.00 31.32 5.34
2825 3260 2.910319 ACATCCAGCCAAGTTAGGTGTA 59.090 45.455 0.00 0.00 0.00 2.90
2837 3272 1.337071 CTGATGCATCAACATCCAGCC 59.663 52.381 28.39 0.00 44.84 4.85
2838 3273 1.269102 GCTGATGCATCAACATCCAGC 60.269 52.381 28.39 21.74 44.84 4.85
2843 3278 2.172679 TGTTGGCTGATGCATCAACAT 58.827 42.857 28.39 0.00 42.24 2.71
2851 3286 1.094785 ATACGGTTGTTGGCTGATGC 58.905 50.000 0.00 0.00 38.76 3.91
2852 3287 2.352651 CTCATACGGTTGTTGGCTGATG 59.647 50.000 0.00 0.00 0.00 3.07
2857 3292 0.447801 CAGCTCATACGGTTGTTGGC 59.552 55.000 0.00 0.00 0.00 4.52
2858 3293 1.086696 CCAGCTCATACGGTTGTTGG 58.913 55.000 0.00 0.00 0.00 3.77
2860 3295 1.899814 TCTCCAGCTCATACGGTTGTT 59.100 47.619 0.00 0.00 0.00 2.83
2862 3297 2.166459 TCTTCTCCAGCTCATACGGTTG 59.834 50.000 0.00 0.00 0.00 3.77
2863 3298 2.457598 TCTTCTCCAGCTCATACGGTT 58.542 47.619 0.00 0.00 0.00 4.44
2865 3300 3.742433 ATTCTTCTCCAGCTCATACGG 57.258 47.619 0.00 0.00 0.00 4.02
2867 3302 6.341316 TGTTGTATTCTTCTCCAGCTCATAC 58.659 40.000 0.00 0.00 0.00 2.39
2868 3303 6.544928 TGTTGTATTCTTCTCCAGCTCATA 57.455 37.500 0.00 0.00 0.00 2.15
2869 3304 5.426689 TGTTGTATTCTTCTCCAGCTCAT 57.573 39.130 0.00 0.00 0.00 2.90
2870 3305 4.890158 TGTTGTATTCTTCTCCAGCTCA 57.110 40.909 0.00 0.00 0.00 4.26
2871 3306 6.372659 TGAATTGTTGTATTCTTCTCCAGCTC 59.627 38.462 0.00 0.00 35.89 4.09
2872 3307 6.240894 TGAATTGTTGTATTCTTCTCCAGCT 58.759 36.000 0.00 0.00 35.89 4.24
2874 3309 7.678947 ACTGAATTGTTGTATTCTTCTCCAG 57.321 36.000 0.00 0.00 35.89 3.86
2875 3310 8.352201 CAAACTGAATTGTTGTATTCTTCTCCA 58.648 33.333 0.00 0.00 35.89 3.86
2888 3361 4.400529 GGGTCAACCAAACTGAATTGTT 57.599 40.909 0.89 0.00 39.85 2.83
2915 3389 2.935955 GTCACCACGTTCGGCAAG 59.064 61.111 0.00 0.00 0.00 4.01
2941 3415 2.049433 ACACGGAGTTTCGGCTCG 60.049 61.111 0.00 0.00 41.61 5.03
2946 3420 0.937699 TTCGAGCACACGGAGTTTCG 60.938 55.000 0.00 7.28 41.61 3.46
2947 3421 0.784778 CTTCGAGCACACGGAGTTTC 59.215 55.000 0.00 0.00 41.61 2.78
2958 3432 0.884704 GGTTCAAGTGGCTTCGAGCA 60.885 55.000 8.71 0.00 44.75 4.26
2962 3436 0.512952 CGAAGGTTCAAGTGGCTTCG 59.487 55.000 0.00 0.00 37.83 3.79
2965 3439 0.035458 CCTCGAAGGTTCAAGTGGCT 59.965 55.000 0.00 0.00 0.00 4.75
2997 3471 3.105659 GCTGATCGGAGCCAAAGC 58.894 61.111 5.48 0.00 40.32 3.51
3016 3490 0.387239 GGCAACCACGCAAGATTCAC 60.387 55.000 0.00 0.00 43.62 3.18
3017 3491 1.851021 CGGCAACCACGCAAGATTCA 61.851 55.000 0.00 0.00 43.62 2.57
3018 3492 1.154225 CGGCAACCACGCAAGATTC 60.154 57.895 0.00 0.00 43.62 2.52
3019 3493 1.852067 GACGGCAACCACGCAAGATT 61.852 55.000 0.00 0.00 43.62 2.40
3021 3495 2.970324 GACGGCAACCACGCAAGA 60.970 61.111 0.00 0.00 43.62 3.02
3044 3518 4.201122 CCATCCCTCTGCTGCCCC 62.201 72.222 0.00 0.00 0.00 5.80
3045 3519 2.459086 ATCCATCCCTCTGCTGCCC 61.459 63.158 0.00 0.00 0.00 5.36
3046 3520 1.228184 CATCCATCCCTCTGCTGCC 60.228 63.158 0.00 0.00 0.00 4.85
3047 3521 1.228184 CCATCCATCCCTCTGCTGC 60.228 63.158 0.00 0.00 0.00 5.25
3048 3522 1.228184 GCCATCCATCCCTCTGCTG 60.228 63.158 0.00 0.00 0.00 4.41
3049 3523 2.815945 CGCCATCCATCCCTCTGCT 61.816 63.158 0.00 0.00 0.00 4.24
3050 3524 2.281345 CGCCATCCATCCCTCTGC 60.281 66.667 0.00 0.00 0.00 4.26
3051 3525 2.429058 CCGCCATCCATCCCTCTG 59.571 66.667 0.00 0.00 0.00 3.35
3052 3526 3.564218 GCCGCCATCCATCCCTCT 61.564 66.667 0.00 0.00 0.00 3.69
3053 3527 4.996434 CGCCGCCATCCATCCCTC 62.996 72.222 0.00 0.00 0.00 4.30
3079 3553 1.501741 CGGCCTTGATTGACAACGG 59.498 57.895 0.00 0.00 34.56 4.44
3081 3555 0.958822 AACCGGCCTTGATTGACAAC 59.041 50.000 0.00 0.00 34.56 3.32
3088 3562 1.674817 CGTAGAACAACCGGCCTTGAT 60.675 52.381 11.47 0.00 0.00 2.57
3096 3570 2.377310 CGCCCACGTAGAACAACCG 61.377 63.158 0.00 0.00 33.53 4.44
3117 3591 4.357947 GGAGCTGCCGTCGTGTCA 62.358 66.667 0.00 0.00 0.00 3.58
3155 3629 2.088423 GATTGTTATCACCGGCCAACA 58.912 47.619 0.00 3.83 0.00 3.33
3156 3630 1.404035 GGATTGTTATCACCGGCCAAC 59.596 52.381 0.00 0.78 32.09 3.77
3157 3631 1.683629 GGGATTGTTATCACCGGCCAA 60.684 52.381 0.00 0.00 32.09 4.52
3158 3632 0.106918 GGGATTGTTATCACCGGCCA 60.107 55.000 0.00 0.00 32.09 5.36
3159 3633 0.106918 TGGGATTGTTATCACCGGCC 60.107 55.000 0.00 0.00 32.93 6.13
3160 3634 1.404035 GTTGGGATTGTTATCACCGGC 59.596 52.381 0.00 0.00 32.93 6.13
3161 3635 2.999331 AGTTGGGATTGTTATCACCGG 58.001 47.619 0.00 0.00 32.93 5.28
3162 3636 3.554324 CGTAGTTGGGATTGTTATCACCG 59.446 47.826 0.00 0.00 32.93 4.94
3163 3637 4.510571 ACGTAGTTGGGATTGTTATCACC 58.489 43.478 0.00 0.00 37.78 4.02
3164 3638 5.230726 CGTACGTAGTTGGGATTGTTATCAC 59.769 44.000 7.22 0.00 37.78 3.06
3165 3639 5.105797 ACGTACGTAGTTGGGATTGTTATCA 60.106 40.000 21.41 0.00 37.78 2.15
3166 3640 5.343249 ACGTACGTAGTTGGGATTGTTATC 58.657 41.667 21.41 0.00 37.78 1.75
3167 3641 5.329035 ACGTACGTAGTTGGGATTGTTAT 57.671 39.130 21.41 0.00 37.78 1.89
3168 3642 4.782019 ACGTACGTAGTTGGGATTGTTA 57.218 40.909 21.41 0.00 37.78 2.41
3169 3643 3.665745 ACGTACGTAGTTGGGATTGTT 57.334 42.857 21.41 0.00 37.78 2.83
3170 3644 3.665745 AACGTACGTAGTTGGGATTGT 57.334 42.857 23.12 0.00 37.78 2.71
3171 3645 3.989167 TCAAACGTACGTAGTTGGGATTG 59.011 43.478 24.87 20.30 37.78 2.67
3172 3646 4.255833 TCAAACGTACGTAGTTGGGATT 57.744 40.909 24.87 11.32 37.78 3.01
3173 3647 3.940209 TCAAACGTACGTAGTTGGGAT 57.060 42.857 24.87 6.13 37.78 3.85
3174 3648 3.641648 CTTCAAACGTACGTAGTTGGGA 58.358 45.455 24.87 16.18 37.78 4.37
3175 3649 2.156310 GCTTCAAACGTACGTAGTTGGG 59.844 50.000 24.87 19.71 37.78 4.12
3176 3650 3.054878 AGCTTCAAACGTACGTAGTTGG 58.945 45.455 24.87 15.04 37.78 3.77
3177 3651 3.121126 CCAGCTTCAAACGTACGTAGTTG 60.121 47.826 23.12 22.05 37.78 3.16
3178 3652 3.054878 CCAGCTTCAAACGTACGTAGTT 58.945 45.455 23.12 10.64 37.78 2.24
3180 3654 1.990563 CCCAGCTTCAAACGTACGTAG 59.009 52.381 23.12 16.12 0.00 3.51
3181 3655 1.936203 GCCCAGCTTCAAACGTACGTA 60.936 52.381 23.12 2.73 0.00 3.57
3182 3656 1.226030 GCCCAGCTTCAAACGTACGT 61.226 55.000 16.72 16.72 0.00 3.57
3183 3657 1.225376 TGCCCAGCTTCAAACGTACG 61.225 55.000 15.01 15.01 0.00 3.67
3184 3658 0.948678 TTGCCCAGCTTCAAACGTAC 59.051 50.000 0.00 0.00 0.00 3.67
3185 3659 1.202710 TCTTGCCCAGCTTCAAACGTA 60.203 47.619 0.00 0.00 0.00 3.57
3186 3660 0.465460 TCTTGCCCAGCTTCAAACGT 60.465 50.000 0.00 0.00 0.00 3.99
3187 3661 0.883833 ATCTTGCCCAGCTTCAAACG 59.116 50.000 0.00 0.00 0.00 3.60
3188 3662 1.888512 TCATCTTGCCCAGCTTCAAAC 59.111 47.619 0.00 0.00 0.00 2.93
3189 3663 2.291209 TCATCTTGCCCAGCTTCAAA 57.709 45.000 0.00 0.00 0.00 2.69
3190 3664 2.291089 TGATCATCTTGCCCAGCTTCAA 60.291 45.455 0.00 0.00 0.00 2.69
3191 3665 1.282738 TGATCATCTTGCCCAGCTTCA 59.717 47.619 0.00 0.00 0.00 3.02
3192 3666 2.048444 TGATCATCTTGCCCAGCTTC 57.952 50.000 0.00 0.00 0.00 3.86
3193 3667 2.750141 ATGATCATCTTGCCCAGCTT 57.250 45.000 1.18 0.00 0.00 3.74
3194 3668 2.693591 CAAATGATCATCTTGCCCAGCT 59.306 45.455 9.06 0.00 0.00 4.24
3195 3669 2.223971 CCAAATGATCATCTTGCCCAGC 60.224 50.000 9.06 0.00 0.00 4.85
3196 3670 2.223971 GCCAAATGATCATCTTGCCCAG 60.224 50.000 9.06 4.93 0.00 4.45
3197 3671 1.758280 GCCAAATGATCATCTTGCCCA 59.242 47.619 9.06 0.00 0.00 5.36
3198 3672 2.037144 AGCCAAATGATCATCTTGCCC 58.963 47.619 9.06 9.11 0.00 5.36
3199 3673 3.131577 TCAAGCCAAATGATCATCTTGCC 59.868 43.478 21.58 13.29 33.11 4.52
3200 3674 4.380841 TCAAGCCAAATGATCATCTTGC 57.619 40.909 21.58 17.45 33.11 4.01
3201 3675 7.333423 ACATTTTCAAGCCAAATGATCATCTTG 59.667 33.333 20.85 20.85 42.10 3.02
3202 3676 7.391620 ACATTTTCAAGCCAAATGATCATCTT 58.608 30.769 9.06 5.13 42.10 2.40
3203 3677 6.942976 ACATTTTCAAGCCAAATGATCATCT 58.057 32.000 9.06 0.00 42.10 2.90
3204 3678 8.706492 TTACATTTTCAAGCCAAATGATCATC 57.294 30.769 9.06 0.00 42.10 2.92
3205 3679 7.279313 GCTTACATTTTCAAGCCAAATGATCAT 59.721 33.333 1.18 1.18 42.10 2.45
3206 3680 6.591062 GCTTACATTTTCAAGCCAAATGATCA 59.409 34.615 11.40 0.00 42.10 2.92
3207 3681 6.591062 TGCTTACATTTTCAAGCCAAATGATC 59.409 34.615 11.40 0.00 45.27 2.92
3208 3682 6.369615 GTGCTTACATTTTCAAGCCAAATGAT 59.630 34.615 11.40 0.90 45.27 2.45
3209 3683 5.695816 GTGCTTACATTTTCAAGCCAAATGA 59.304 36.000 11.40 0.00 45.27 2.57
3210 3684 5.466058 TGTGCTTACATTTTCAAGCCAAATG 59.534 36.000 4.05 4.24 45.27 2.32
3211 3685 5.609423 TGTGCTTACATTTTCAAGCCAAAT 58.391 33.333 4.05 0.00 45.27 2.32
3212 3686 5.016051 TGTGCTTACATTTTCAAGCCAAA 57.984 34.783 4.05 0.00 45.27 3.28
3213 3687 4.662468 TGTGCTTACATTTTCAAGCCAA 57.338 36.364 4.05 0.00 45.27 4.52
3214 3688 4.662468 TTGTGCTTACATTTTCAAGCCA 57.338 36.364 4.05 0.00 45.27 4.75
3215 3689 5.695816 TGAATTGTGCTTACATTTTCAAGCC 59.304 36.000 4.05 0.00 45.27 4.35
3216 3690 6.642131 TCTGAATTGTGCTTACATTTTCAAGC 59.358 34.615 0.00 0.00 45.90 4.01
3217 3691 7.864379 AGTCTGAATTGTGCTTACATTTTCAAG 59.136 33.333 0.00 0.00 0.00 3.02
3218 3692 7.715657 AGTCTGAATTGTGCTTACATTTTCAA 58.284 30.769 0.00 0.00 0.00 2.69
3219 3693 7.275888 AGTCTGAATTGTGCTTACATTTTCA 57.724 32.000 0.00 0.00 0.00 2.69
3220 3694 7.862372 TCAAGTCTGAATTGTGCTTACATTTTC 59.138 33.333 16.31 0.00 0.00 2.29
3221 3695 7.715657 TCAAGTCTGAATTGTGCTTACATTTT 58.284 30.769 16.31 0.00 0.00 1.82
3222 3696 7.275888 TCAAGTCTGAATTGTGCTTACATTT 57.724 32.000 16.31 0.00 0.00 2.32
3223 3697 6.882610 TCAAGTCTGAATTGTGCTTACATT 57.117 33.333 16.31 0.00 0.00 2.71
3224 3698 6.882610 TTCAAGTCTGAATTGTGCTTACAT 57.117 33.333 16.31 0.00 36.62 2.29
3236 3710 7.504924 ACGATTGGTTTTATTCAAGTCTGAA 57.495 32.000 0.00 0.00 45.53 3.02
3237 3711 6.128661 CGACGATTGGTTTTATTCAAGTCTGA 60.129 38.462 0.00 0.00 0.00 3.27
3238 3712 6.015504 CGACGATTGGTTTTATTCAAGTCTG 58.984 40.000 0.00 0.00 0.00 3.51
3239 3713 5.121768 CCGACGATTGGTTTTATTCAAGTCT 59.878 40.000 0.00 0.00 0.00 3.24
3240 3714 5.121142 TCCGACGATTGGTTTTATTCAAGTC 59.879 40.000 0.00 0.00 0.00 3.01
3241 3715 4.998672 TCCGACGATTGGTTTTATTCAAGT 59.001 37.500 0.00 0.00 0.00 3.16
3242 3716 5.447279 CCTCCGACGATTGGTTTTATTCAAG 60.447 44.000 0.00 0.00 0.00 3.02
3243 3717 4.393680 CCTCCGACGATTGGTTTTATTCAA 59.606 41.667 0.00 0.00 0.00 2.69
3244 3718 3.936453 CCTCCGACGATTGGTTTTATTCA 59.064 43.478 0.00 0.00 0.00 2.57
3245 3719 4.186159 TCCTCCGACGATTGGTTTTATTC 58.814 43.478 0.00 0.00 0.00 1.75
3246 3720 4.210724 TCCTCCGACGATTGGTTTTATT 57.789 40.909 0.00 0.00 0.00 1.40
3247 3721 3.899052 TCCTCCGACGATTGGTTTTAT 57.101 42.857 0.00 0.00 0.00 1.40
3248 3722 3.899052 ATCCTCCGACGATTGGTTTTA 57.101 42.857 0.00 0.00 0.00 1.52
3249 3723 2.747446 CAATCCTCCGACGATTGGTTTT 59.253 45.455 10.62 0.00 41.84 2.43
3250 3724 2.027561 TCAATCCTCCGACGATTGGTTT 60.028 45.455 15.78 0.00 44.41 3.27
3251 3725 1.553248 TCAATCCTCCGACGATTGGTT 59.447 47.619 15.78 0.00 44.41 3.67
3252 3726 1.191535 TCAATCCTCCGACGATTGGT 58.808 50.000 15.78 0.00 44.41 3.67
3253 3727 2.533266 ATCAATCCTCCGACGATTGG 57.467 50.000 15.78 0.00 44.41 3.16
3254 3728 3.457234 TCAATCAATCCTCCGACGATTG 58.543 45.455 11.74 11.74 45.24 2.67
3255 3729 3.133003 ACTCAATCAATCCTCCGACGATT 59.867 43.478 0.00 0.00 0.00 3.34
3256 3730 2.695666 ACTCAATCAATCCTCCGACGAT 59.304 45.455 0.00 0.00 0.00 3.73
3257 3731 2.100197 ACTCAATCAATCCTCCGACGA 58.900 47.619 0.00 0.00 0.00 4.20
3258 3732 2.586258 ACTCAATCAATCCTCCGACG 57.414 50.000 0.00 0.00 0.00 5.12
3259 3733 3.800604 GCCTACTCAATCAATCCTCCGAC 60.801 52.174 0.00 0.00 0.00 4.79
3260 3734 2.365617 GCCTACTCAATCAATCCTCCGA 59.634 50.000 0.00 0.00 0.00 4.55
3261 3735 2.103094 TGCCTACTCAATCAATCCTCCG 59.897 50.000 0.00 0.00 0.00 4.63
3262 3736 3.845781 TGCCTACTCAATCAATCCTCC 57.154 47.619 0.00 0.00 0.00 4.30
3263 3737 4.965814 TGATGCCTACTCAATCAATCCTC 58.034 43.478 0.00 0.00 0.00 3.71
3264 3738 5.104193 AGTTGATGCCTACTCAATCAATCCT 60.104 40.000 1.11 0.00 35.26 3.24
3265 3739 5.008415 CAGTTGATGCCTACTCAATCAATCC 59.992 44.000 1.11 0.00 35.26 3.01
3266 3740 5.008415 CCAGTTGATGCCTACTCAATCAATC 59.992 44.000 1.11 0.00 35.26 2.67
3267 3741 4.885907 CCAGTTGATGCCTACTCAATCAAT 59.114 41.667 1.11 0.00 35.26 2.57
3268 3742 4.263462 ACCAGTTGATGCCTACTCAATCAA 60.263 41.667 0.00 0.00 35.26 2.57
3269 3743 3.264193 ACCAGTTGATGCCTACTCAATCA 59.736 43.478 0.00 0.00 35.26 2.57
3270 3744 3.878778 ACCAGTTGATGCCTACTCAATC 58.121 45.455 0.00 0.00 35.26 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.