>input_sequence_55340
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----------CGAGCGGATCCACTCGATCTAGTCCC--------------ATGGCCACGGCGGTGCTCAGATCCCACGAC
GCGCTCGCCAACAGGATGCATCTCGACGCCTTCGCCGCCTCCCCCCAGGCCGCCAAGCAGCGCCGCCGGCGCCACCCCAA
GCCGGCCTCGCCGCCGCCCAAGGTGGTC---------GCCGGCTCTTCGCCGCCAAAGCCGGCTCTTTTGGCGTCTCCAG
CGTTGAAGCAGGCCCCCGCGGCCGGCCGTCGGTCCCCGCCGGCGAAGCCTGCCCGCAAGCAGCCGTCCCCGACCAAGGAG
AAGCCCCGGCAGCAACCCATCGTGATGGAGGCCGTCCGGATCCTCAAGCGTGGCGAGGAGCCCCCGGTCCCCTCACCCGC
CCCTGCACCTGTCCAGGCCCGGGCGCAAGCCCCGCCCGCGGACAGGCGTCTGCGGTCTCCCTCCCCTGCCTCACCGCCCG
TCGTCAAGGCCCGGCCCCAAGCCCCGCCAGCGGACAGGCGCGTACGGTCTCCTCCCCCAGCCTCGGCACCTATCGCGTCG
GCCCGGGCGCAAGCCCCGCCGGCCGACAAGAGGGCGCTCCGGACCACCAGCCGGATCGGCCCGCAGCAACCTTCCGTCGT
CCCGACTAAAAAGATGGTGCCAGTCGCCATCGCAACCAGCTATGCGGGCCCGGCGTTCTCGGCCGCGGCCCCGGAGCCGA
GCTCCCTCCCCCTCCCAGGGTTCTTCTTCCGGCGCGCAGAGGAAGAGGCCACCCGCGGCCTCCGGTGCCTGCTCCGCATC
GGCGAGCTCTCATGATGACGGCTCCCCCTCCAGCAGCGTCGTGTGCGCCCCCTCCGCGGCCGCGCCGTTCTGCTCTGCTC
CCTCCTCCCCCTCGTATCACCGCCTCTGCAC-CGAAGCAACAACAAGAAGAAGAGGTGGTGGTGGTGGTAATAACTCTCC
CTGACTGAAGGATGGAAGGATTTTATCTGTGGATGGTCGGTGTGCGGATGGGTCCGGCGGCAAGCTTGGCCGGATCAGAT
CCCG---GCTCCGTTCCGATCGAACCCTTCCGGTATTTTTTCAGAGGAAGGGTCATCGGGGGAGCGGAGGTCCGGCGGTA
GGGTTTGGTGGTGGTTGCTTTAGGTTCGCGCGGTGCTG-----------CTGCTGCTGCACAGGTGTTTGGTTCGCCTTG
ATGTCGTTAGGTAGCTTGTTAATTGTCGGTCAGTCAGAATGATTAAGGGTTGGTTCTTGGTTTAGGT----GGC---GAT
AATCTGGTAGCTAGGGAGTGGGTCTCAGGTTTGGTTGCAGTGATGTTAATAATTGAAGTTTATGTGT-------------
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>chr6A_1_TraesCS6A01G360900
AAAAGAAAAGGCAAGCTGAAATTTAGGAAAAAGATTGACCACGACGTGCTCTGCTCCGCCTCGTCCTCCCCGCGTCCC--
---------------------------------CGGGCCCAACGACGAGTTGTTTTTATCGCGGCTGCCCCTCTGTGACC
AACCAGGTCCACGGAAGGTGCCTCGCACAGCATAACATAATCCGCGAATAATATTCTTTTTTTAATAACCAAAGAAAGAT
ACCACTCGTACC--ACCGAAAGATGCCTCGCATTATTTTACTTATATTATTATTATTATTTGGCGAGCGATTATCACTCA
TCATCAATTA---TATCAGCCACGGTAGGTGGTGCGGCGATAATGAGAATCGATAAGGACGCGCGGGCGGCGT--GGGCC
CGGCCCGAAACCGCCTGGCGGGCCGCAGCTGGATGGAACGACGCCACAGCTGTATGCTGCCGGGCCCGCCACTCCCCCAC
T--TGCGTCTCGCGGCTCCCACGTCGTCAACTGTGCTGCGTCTTTGTCTCA------AAAAAAAAACTGTGCTGCGTCTG
TCTGTGCCTATCTATCCCCCTTCCCCGATATTTACCCCTCAATTTCCTACGAATTTCTCGCTCACGTCTCTCCATTTCAC
CGCACCTTTGCCCCCAGAAATGCCCACTATTCACACCCCAACTGCCATCGGACG--CACCAACCG-------------CG
GAATTTCACGCAAGCCCATGGGCTTTACCCGACCCTCGCCAATAATTCGGCCGCCCACGTC-------------------
-------------------------AGAGCAATAAAGATCTCTTCTCCACTAAGCAAAAAAAAACCCGTATTATTTTATT
TTTTATTTTACTATT----CGAGTCGGAGAGGGTAAGCGCAGCGCGCACGCTTCCGTCAGGGCCCGGCCCGGTTTCT---
-----TTCTTCTTC---TATAAAACGCGGCCCGGCGGCACCGGGATATCTCCCCCATTGTTTCCTCCC--CCACAAATCT
CATCTTCTT----CTCGCTAGGGTTAGGTCTCCGGCGCGGCGCGGCGCAATCCGCAAATCCCGACGACGGCGCCCCCCTG
AGCCAAGCAGCGAGCGGATCCACTCGATCTAGTCCC--------------ATGGCCACGGCGGTGCTCAGATCCCACGAC
GCGCTCGCCAACAGGATGCATCTCGACGCCTTCGCCGCCTCCCCCCAGGCCGCCAAGCAGCGCCGCCGGCGCCACCCCAA
GCCGGCCTCGCCGCCGCCCAAGGTGGTC---------GCCGGCTCTTCGCCGCCAAAGCCGGCTCTTTTGGCGTCTCCAG
CGTTGAAGCAGGCCCCCGCGGCCGGCCGTCGGTCCCCGCCGGCGAAGCCTGCCCGCAAGCAGCCGTCCCCGACCAAGGAG
AAGCCCCGGCAGCAACCCATCGTGATGGAGGCCGTCCGGATCCTCAAGCGTGGCGAGGAGCCCCCGGTCCCCTCACCCGC
CCCTGCACCTGTCCAGGCCCGGGCGCAAGCCCCGCCCGCGGACAGGCGTCTGCGGTCTCCCTCCCCTGCCTCACCGCCCG
TCGTCAAGGCCCGGCCCCAAGCCCCGCCAGCGGACAGGCGCGTACGGTCTCCTCCCCCAGCCTCGGCACCTATCGCGTCG
GCCCGGGCGCAAGCCCCGCCGGCCGACAAGAGGGCGCTCCGGACCACCAGCCGGATCGGCCCGCAGCAACCTTCCGTCGT
CCCGACTAAAAAGATGGTGCCAGTCGCCATCGCAACCAGCTATGCGGGCCCGGCGTTCTCGGCCGCGGCCCCGGAGCCGA
GCTCCCTCCCCCTCCCAGGGTTCTTCTTCCGGCGCGCAGAGGAAGAGGCCACCCGCGGCCTCCGGTGCCTGCTCCGCATC
GGCGAGCTCTCATGATGACGGCTCCCCCTCCAGCAGCGTCGTGTGCGCCCCCTCCGCGGCCGCGCCGTTCTGCTCTGCTC
CCTCCTCCCCCTCGTATCACCGCCTCTGCAC-CGAAGCAACAACAAGAAGAAGAGGTGGTGGTGGTGGTAATAACTCTCC
CTGACTGAAGGATGGAAGGATTTTATCTGTGGATGGTCGGTGTGCGGATGGGTCCGGCGGCAAGCTTGGCCGGATCAGAT
CCCG---GCTCCGTTCCGATCGAACCCTTCCGGTATTTTTTCAGAGGAAGGGTCATCGGGGGAGCGGAGGTCCGGCGGTA
GGGTTTGGTGGTGGTTGCTTTAGGTTCGCGCGGTGCTG-----------CTGCTGCTGCACAGGTGTTTGGTTCGCCTTG
ATGTCGTTAGGTAGCTTGTTAATTGTCGGTCAGTCAGAATGATTAAGGGTTGGTTCTTGGTTTAGGT----GGC---GAT
AATCTGGTAGCTAGGGAGTGGGTCTCAGGTTTGGTTGCAGTGATGTTAATAATTGAAGTTTATGTGTGCGTGTGTG--GG
TCG------------------AAGGTATGAG---------------TTATGAGGTAAATTATA--TATACTGAAAAGTAT
GGA---------GGTAGTTGCATCATCAGCTGAGCTATGTGTAGTTGGTGTAGCGACTGAGAAGTGTGTCTAGTTGCATC
AGCTAGGCTATGTGTAGTTGATTTAGCAACTGAGTTATGT-TAGGT-----AAGAGTTGTTCATGGTC---------ATA
TCGAA--------GTCTGTATCGGTCGATCATAGTGTTATAATCCGTGAAATAAAGTATGTCAGTGGTAGATTATATGAG
CTCTTGTC-TTGAATCTTGATGGTGTGTGATCATCATCTGTTCTTGATTCTTGTTCATAATGATTTGTTGAACTTGCACA
ACAGTCTCTACCT-------CGACATCTCTACCTTTATGATGACCCCCATTATGATCTGACAATTGATATCCACCAGTGA
TGAAATATACTGCTTTCTTAGGA---------------------------------------------------------
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-------------------------------------GGTGGTGGTGTTGATTGAATGCCACC---AGCACTTGTCTCTC
TGGCTAAGCAAGGCCAAATCATACTCCACCAGCCAGGCGTGT-----TAGCTGATTATCTACACCTAACTTGGCTGGATG
TTGATGCATCAGCCAACAACCGTATGAGCT--------------------------------------GGAGAAGAATAC
AACAATTCAGTTTGGTT-GACCCAGAAACTTGCCGAACGTGGTGACGCGTCCGCCGAGCCGAAACTCCGTGTGCTCGAAG
CCACTTGAACCTTCGAGGTGTCTGGCAAAAGCTTTGGCTCCGATCAGCCGTGAATCTTGCGTGGTTGCCGTCTCTCAGGG
GCAGCAGAGGGATGGATGGCGGCGTCGGCGTCCCGTTGTCAATCAAGGCCGGTTGTTCTACGTGGGCGTTTGACACGACG
GCAGCTCCTTGTGCCGACCCTGTGTTGGTGTTGGCCGGTGATAACAATCCCAACTACGTACGTTTGAAGCTGGGCAAGAT
GATCATTTGGCTTGAAAATGTAAGCACAATTCAGACTTGAATAAAACCAATCGTCGGAGGATTGATTGAGTAGGCATCAA
CTGGT
>chr6B_27
--------------------------GAAAAAGATTGACCACGACGTGCTCTGCTCCGCCTCGTCCTCCCCGCGTCCCCG
GTACCGACCGCCGGGCCCGCCGCCGGGTCGCGACGAGCCCAACGGCGAGTTGTTTTTATCGCGGCTGCCCCTCTGTGACC
AACCAGGTCCACGGAAGGTGGCACACACAG-----CATAATCCGCGAATAATATA----TTTTTCTAACCCAAGAAAGAT
ACCACTCGTACTATACCGAATGATGCTTCACATTTTATTA---------TTATTATTATTTGGCGAGCGATTATCACTCA
TCATCAATTATACTATCAATCACGGTA---GGTGCGGCGATAATG-GAATCGATAAGGACGCGC---CGGCGGTGGGCCC
CGGCCCGAAACCGGCTGGCGGGCCGCAGCTGGA----ACGACGCCACAGCTGTATGTTGCCGGGCCCGCCACTCCCCACT
TGCTGCGTTTCGCGGCTCCCACGTCGTCAACTGTGCCGCGTCTGTAACTCAAAAATGAAAAAAAAACTGTGCCGCGTCTG
TGC--------CTATCCCCTTCCCCCGATATTTACCCCTCAATTTCCGACGAATTTCTCGCTCACGTCTCTCCATTTCAC
CACACCTTTACCCCCAGAAACGTCCGTTATTCACAGCCCAACTGCCACCCCGCTCACACCAACCGCGATGGCACGCCACG
AAATTTCACGCAACCCCGAGGGCTCGACCCTATCCAGGCCAATAATTCAGCCGCCCACGTCGGGCACGAGCACGAGCCGG
GCCCACCCCGTGCCC-CACCACGTCAGACCAATAAAGATCTCTTCACCCCTAAGCAAAAAAAAAAAAACGG---------
TTTTAGTTTTCTATTACTGCGAGTCGGAGAGGGTAAGCGCAGCGCGCACGCTTCCGTCAGGGCCCGGCCCGGCCCGCGCG
GTTTCTTCCTCTTC---TATAAAACGCGGCCCGGCGGCCACGGGATATCTCCCCCATTGTTTTCTTCCTCCCGCAGATTC
CC---TCTTCTCGCTCGTTAGGGTTAGGTCTCCCC--CGGCGCGGCGCAATCCGCAAATCTCGACGACGGCGCC------
----AAGCAGCGAGCGGATCCAGTCGATCTAGTCCCGCGCCGACGAGCCTATGGCGACGGCGGTGCTCAGATCCCACGAC
GCGCTCGCCAACAGGATGCATCTCGCCGCCTTCGCCGCGTCCCCCCAGGCCGCCAAGCAGCGCCGCCGGCGCCACCCCAA
GCCGGCCTCGCCGCCGCCCAAGGTGGCC---GTTGTTGCCGGTTCTTCGCCGCCAAAGCCGGCTCTTTTGGCGTCGCCGG
CGACGAAGCAGGCGCCCGCGGCCGGCCGTCGGTCCCCGCCGGTGAAGCCTGCCCGCAAGCAGCCTTCCCCGACCAAGGAG
AAGCCCCGGCAGCAGCCGATCGTGATGGAGGCCGTCCGGATCCTCAAGCGCGGCGAGGAGCCGCCTG------CCCCCGC
CCCCGCGCCAGTCCAGGCCAGGGCGCAAGCCCAGCCCGCGGACAGGCGGGTGCGGTCTCCCTCCCCTGCCTCACCGCCCG
TCGTCAAGGCCCGGCCCCAAGCCCCGCCAGCGGATAGGCGCGTGCGGTCTCCTCCCCCAGCCACAGCACCCATCC---CG
GCACGGGCGCAAGCCCCGCCGGCCGACAAGAGGGCGCTCCGGACCACCAGCCGGATCGGCCCGCAGCAACCTGCCGTGGC
CCCGACCAAGAAGATGGTGCCAGTCGCCATCGCAACCAGCTACGCCGGCCCGGCGTTCTCTGCCGCGGCCCCAGAGCCGA
GCTCCCTGCCCCTGCCGGGATTCTTCTTCCGGCGCGCAGAGGAAGAGGCCACCCGCGGCCTCCGGTGCCTGCTCCGCATC
GGCGAGCTCTCATGATGACGGCTCCCCCTCCAGTAGCAGCGTGTGCGCCTCCTCCGTGGCTGCGCCGTTCTGCTCTCCTC
CCTCCTCCCCCTCGTCTCGCCTCATCTCCTCTGGAAGCAACAAGAAGAAGAAGAAGA------GGTGGTAATAACTCTCC
CTGACTGAAGGACGGAAGGATTTTATCTGCGGATGGTTGGTGTGTGGTTCGATCCGGCGG-------------ATCAGAT
CCCGGAAGCTCCGTTCCGATCGAACCCTTCCGGTATTTTTTCAGAGGAAGGGTCATCGGGGGAGCGGAGGTCCGGCGGTA
GGGTTTGGTGGTGGTTGCTTTAGGTTCGCGCGTTGCTG-----------C--------------TGTTTGGTTCGCCTTG
ATGTCGTTAGGTAGGTTGTTAAT--------------------------------CTTGGTGTAGGT----GACGATGAT
GATCTGGTAGCTAGGGAGTGGGTCTCAGGTTTGGT------------AATAATTGAAGTTTATGCGTGTGTGCGTG--TG
TGGGGGTTGAAGATTAAGGTTAAGGTATGAG---------------TTAT---TACAAGTTATTATATACTGAGAGGTAA
GTAAATTAGTATGGTGGTTG---CATCAGCTGAGCTATGTGTAGTTGGTGTGGCAACTGAGAGGTGTGTCTAGTTGCATC
AGCTAGGCTATGTGTAGTTGATTTAGCAGCTGAGTTATCT-TAGGTATTTCAAGAGTTGTTCATGGTCCTTTGTAAGATA
TATCTAAGTCTGTGTCTGTATCGGTCGATCATAGAGCTATAATTCGTGAAATAAAA-ATGTCAGTGGTAGATTATATGAG
CTCTCCTCTTTCA-------TGGTTTGTG---ATCATCTGTTGTTGATTCTTGCTCATAACGATTT--------------
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>chr6D_79
--------------------------------------------------------------------------------
---------------------------------CGAGCCCAACGGCGAGTTGTTTTATCAT-GGCTGCCCCTCTGTGACC
AACCAGGTCCACGGAAGGTGGCACACACAG-----CATAATCCGCGAATAAATTC----CTTTTTTAACCAAGA------
------------------AAAGATGCTTCGCATT---------------TTATTATTATTTCGCGAGCGATTACCACTCA
TCA---ATTA---TATCAGTCACGGTG---GGTGCGGCGATAATGAGAATCGATAAGGACGCGC---CGGGGT--GGGCC
CGGCCCGAAACCGCCTGGCGGGCCGCAGCTGGA----ACGACGCCACAGCTGTATGTTGCCGGGCCCGCCGCTCCCCACT
TG---CGTTTCGCGGCTGCCACGTC---AACTGTGCTGCGTCTGTGCCTATCTTTTTTTTATTTTTGAGTACGCGT----
-CTGTGCCTAT-----CCCCTTCCCCGATATTTACCCCTCAATTTCCTACGAATTTCTCGCTCACGTCTCTCCATTTCAC
CACACCTTTGCCCCCCGAAACGTCCACTATTCACGACCCAACTGCCACCCCGCG--CACCAACCGCGATGGCGCGCCATG
AAATTTCACGCAAGTCCAGGGGCTCCACCCAACCCTCGCCAATAATTCGGCCGCCCACGTCGGGCACGAGCACGAGCCGG
GCCCACCCCGTGCCCCCACCACGTCAGACCAATAAAGATCTCTTGCCCCCTAAGCATAACGAAAAAAAACGCTAG-TATT
ATTTTTTTATCACTT----CGAGTCGGAGAGGGTAAGCGCAGCGCGCACGCTTCCGTCTGGGCCCGGCCCGGCCCGCTCG
GTTTCTTCTTCTTCCTCTATATAATGCGGCCCGGCGGCACCCGGATATCTCCCCCAATGTTCTCTCTC--CCACAGATCC
CC---TCTT----CTCGCTAGGGTTAGGTCTCCCC--CGGCGCGGCGCAATCCGCAAATCTCGACGACGGCGCC------
----GAGCAGCGAGCGAATCCACTCGATCTAGTCCCGCGCCGACGAGCCCATGGCGACGGCGGTGCTCAGATCCCACGAC
GCGCTCGCCAACCGGATGCATCTCGACGCCTTCGCCGCGTCCCCCCAGGCCGCCAAGCAGCGCCGCCGGCGCCACCCCAA
GCCGGCCTCGCCGCCTCCCAAGGTGGTCGCGGTGGTTGCTGGCTCTTCGCCGCCAAAGCCGGCTCTTTTGGCGTCGCCGG
CGACGAAGCAGGCCCCCGCGGCCGGCCGTCGGTCCCCGCCGGCGAAGCCTGCCCGCAAGCAGCCTTCCCCGACCAAGGAG
AAGCCCCGGCAGCAGCCGATCGTGATGGAGGCCGTCCGGATCCTCAAGCGCGGCGAGGAGCCCCCGGCTCCCTCCCCCGC
CCCTGCGCCTGTCCAGGCACGGGCGCAAGCCCCGCCGGCCGACAGGCGGGTGCGGTCTCCCTCCCCTGCCTCACCGCCCG
TCGTCAAGGCCCGGCCCCAAGCCCCGCCTGCGGACAGGCGCGTGCGGTCTCCTCCCCCAGCCACAGCACCCATCC---CG
GCCCGGGCGCAAGCCCCGCCGGCCGACAAGAGGGTGCTCCGGACCACCAGCCGGATCGGCCCGCAGCAACCCGCCGTCGT
GCCAACCAAGAAGATGGTGCCGCTCGCCGTCGCAGCCAGCTACGCCGGCCCGGCGTTCTCGGCCGCGGCCCCGGAGCCGA
GCTCTCTCCCCCTCCCTGGGTTCTTCTTCCGCCGCGCCGAGGAAGAGGCCACCCGCGGCCTCCGCTGCCTGCTCCGCATC
GGCGAGCTCTCATGATGACGGCTCCCCCTCCAGCAGCGTCGTGTGCGCCCCCTCCGCGGCCGCGCCGTTCTGCTCTGCTC
CCTCCTCCCCCTCGTCTCGCCTCATCTCGTC-GGAAGCAACAAGAAGAAGAGGTGGT------GGTGGTAATAACTCTCC
CTGACTGAAGGACGGAAGGATTTTATCTGTGGATGGTTGGTGTGCGGATGGATCCGGCGGCGAGCTTG-CCGGATCAGAT
CCCG---GCTCCGTTCCGATCGAACCCTTCCGGTATTTTTTCAGAGGAAGGGTCGTCGAGGGAGCGGAGGTCCGGCGGTA
GGGTTTGGTGGTGGTTGCTTTAGGTTCGCGCGTTGCTGCTGCTGCACAGC--------------TGTTTGGTTCGCCTTG
ATGTTGTTAGGTAGGTTGTTAATTGTCGGTCAGTCAGAACGATTAAGGGTTGGTTCTTGGTTTAGGT----GAC---GAT
GATCTGGTAGCTAGGGAGTGGGTCTCAGGTTTGGTTACAGTGATGATAATAATTGAAGTTTATGTGTGCGTGTGTGCGGG
TCG------------------AAGATTAAGGGTAAGGTATGAGTTATTATGAGTGCAAAGTTATATATGCTGAGAGATG-
-------AGTATGGTAGTTG---CATCAGCTGAGCTATGTGTAGTTGGTGTAGCGACTGAGAAGTGTGTCTAGTTGCATC
CGCTAGGCTATGTGTAGTTGGTTTAGCAACTGAGTTAATGTTAGTTC---CAAGAGTTGTTCATGGTCCTTTGTAAGATA
TCCAAAAGTCTGTGTCTGTATTGGTCGATCATAGTGTTATAATTCGTGAAATAAAATATATCAGTGGTAGATTATATGAG
CTCTTGTC-TTCA-------TGGTGTGTG---ATCATCTGTTCTTCATTCTTGTTCATAGTGATTTGTTTAACTCGCGCA
ACAGTCTGATCAGGAATTCGCT-GAGCTCTCCCTTTATGAATGGATTGATCTCTTG----------------ACCGGTGA
TGAAATGTGTTGGTGATGTTTTTTTCCCAGATTGTTTTCCTCATGGTGTGTGGCATCATCAGGATTTTGTTGACAATAAT
TTGCAGACCACGCTCCGTCGTCTTTGGCAATTCGTTTGGTTTTGGGTTGCTGT----------------TGCGTGCTCAT
TAGATAGCCTTGTGTTTGGCAGCCCATTGCTTACTTTGGGGGTGGTGGTGATTGAATGCCACTACTAGCACTTGTCTCTC
TGGCTAAGCAAGGCCAAATCATACTCCACCAGCCAGCCGTCTTGTGGTAGCTGATTTTCCACACCTAACTTATCTGGCTG
TTGATTAATCATTCCAACAACCATGCTGAGGGGAGGAGAAAAGAAAAGTAGTATGAGCTGGGTGTGGGGGAGAAGAATAC
CACAATTCAGTTTGGTTAGACCCAGAAATTTGCTGAACGTGGTGACGCGTCTGCTGAGCA-AAACTCCGTGCGCTGGACG
CCACTTGAACCTTCGAGATGTC-------------GGCTCCGATCAGCCTCAGACCTTGCGTGGTTGCCGTCTCTCA---
---------GGATTGATAGCGGCGTCTACGTCTCCTTGTCAGTCAAGGCTGCTTGTTCTACGTGGGCGTTGGACACGACA
GCAGCTCCTTGTGCCGACCCTGTGTTGG----------------------------------------------------
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>chr3A_2032
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----------------------------TCCGGTATTTTTTCAGAGGAAGGGTCATCGGGGAA-CGGAGGTCCAACGGTA
GGGTTTGGTGGTTGTTGCTTTAGGTTCACACGTTGTTGCTGCTGCACAGC--------------TGTTTGGTTCGCTT--
ATGTCGTTAGGTAGGTTGTTAATTATCAGTG-----GAAGGATCAAGGGTTGGTTCTAGTTTGCTGGTTTAGGC---GAT
GATCTGGTAGCTAGGGAGTGGGTCTCAGGTTTGGTTACAG---TGATAATAATTGAAGTTTATGTGTGCGTGTGTG--GG
TTG------------------AAGATTAAGATTAAGAC------TATTATGAGTACAAGTTAT--TATACTGAGAGGTAA
GTA--------TGGTAGTTGCATCATCAACTAAGCTATGTGTAGTTGGTGTAGCAACTAAGAAGTGTGTCTAGTTGCATC
AGCTAGGCTATGTGTAGTTGATTTAGCAGCTGAGTATATCCTAGGT-----AAGAGTTGTTCATCTTCCTTTGTAAGATA
CTGAA--------GTCTGTATCGGTCGATGATAGTGTTATAATCCGTGAAATAAAATATGACAGTGGTAGATTATATGAG
CTCTTGTC-TTCAATCTTGATGGTGTGTGATCATCATCTGTTCTTGATTATTGTTCATAATGATTTGGTGAACTTTCACA
ACAGTCTGATAAGAATTCACCGAGATCTCTACCTTTATGATGATCTCCATTATGATCTGATAATTGATATCCACCAGTGA
TGGAACATATAAGTGATAGTTTGCAAACTCCGG-----------------------------------------------
-------------TCCGTCGTCTCTAGAAATTCGTTTGGTTTTGGGATGTTGTGGAGTGCTAGCTAGTTTGCGTGCTCCG
----TAACCTTGTGTTTGGCAGGCCTTGCTTTCTAA----GGTGGTGGTGATTGAATGCCACA---AGCACTTGTCTCTC
TGGCTAAGCAAGGCCAAATCAGACTCCACCAGCCAGACGTGT-----TAGCTGATTATC---------------------
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>chr5A_2034
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------------------------------CGGTACTTTTTCAGAGGAAGGGTCATCGGGGAA-TGGAGGTCCGGTGGTA
GGGTTTGGTGGTGGTTGCTTTAGGTTCGCACGTTGTTGCTGCTGC---GC--------------TGTTTGGTTCGCTT--
ATGTCGTTAGGTAGGTTGTTAATTGTCAATG-----GAAGGATCAAGGGTTGGTTCTAGTTTGCTGGTTTAGG---TGAT
GATCTGGTAGCTAGGGAGTGGGTCTCGGGTTTGGTTACAG---TGATAATAATTGAAGTTTATGTGTGTGTGTG------
----GGTTGAAGATTAAGGTTAA------------GAC------TATTATGAGTACAAGTTAT--TATACTGAGAGGTAA
GTAC--------GGTAGTTGCATCATCAGCTGAGCTATGTGTAGTTGGTGTGGCAACTGAGAAGTGTGTCTAGTTGCATA
AGCTAGGCTATGTGTAGTTGATTTAGCAGCTGAGTTTATCATAGGT-----AAGAGTTGTTCATCTTCCTTTGTAAGATA
TTCAA--------GTCTGTATCGGTCGATGATAGTGTTATAATACGTGAAATAAAATATGTCAGTGGTAGATTATATGAG
CTCTTGTC-TTCAATCTTGATGGTGTGTGATCATCATCTATTCTTGATTCTTGTTCATAATGATTTGGTGAACTTGCACA
GCCGTCTGATAAGAATTCACCGAGATCTCTACCTTTATGACGATCCCCATTATGATCTGATAATTGATATCCACCAGTGA
TGGAACATATCAGTGATAGTTTGCAAACTCCGG-----------------------------------------------
-------------TCCGTCGTCATTGGCAATTCGTTTGGTTTTGGGCTGCTGTGGAGTGCTAGCTAGTTTGCGTGCTCC-
---ATAGCCTTGTGTTTGGTAGGCCTTTCTTTCTTA----GGTGGTGGTGGTTGAATGCCACC---AGCACTTGTCTCTC
TGGCTAAGCAAGGCCAAATCAGACTCCACCAGCCAGACGTGT-----TAGCTGATTATC---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
-----------------------------------S--------S-----------------------------------
--------------------S-S-S-----SSSSS-------------------SSSSS----SS---------------
-----------S--------------S-------S-S---SSSSSSSSS-------------------------------
-------------------S-------SSS----------------------------------SSS-------------
---------------------------------SSSS-------------------S--------------------SSS
--------S----------------------------------S--S-------------------------S-------
--------------------------------------------------------------------------------
-S------------------S-S------------S-----------S-SSS----------------------------
S-----------------S-----SS----S-------------------------------------------------
----------------------------S----------------S--S---------------SSSSSSSSSSSS----
---------S--------------------------------------------------------------SSSSS---
--------------------------------------------------------------S------------S---S
-SSSS----------------------------SSSS-----------------------S-------------SSSSSS
SSSS---------------------------------------------------S------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------------------------------S--S-
--SS------------------------------------------------------------S---------------
--------------S--S--------------------------------S----------------SS-----S-----
------S-----------------------------------------SS------------------------------
-------------------------------------------S------------------S-S-----S---SSSS--
------------------------------------------------------------------------S-------
------S--S--------------------------------S--S----------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--S--S-S---S-S--S----------S-------------SSSSSS-----------------
------------S------------------------S-------------S---------S------S-----------
--------------------------------------------------------------------------------
--------------------------------S-----------------SSSSSSSSSSSSSS----------------
--------------S------------------------S----------------------------------------
S-----------------------------------S--------S----------------------------------
-----------------------------------------------------SSS--S-S------------S-S---S
-S------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------S------------------------
-----------S--------------------------------------------------------------------
-------SSS-SS----------S-------------------S----------------S-------------------
---------S--S-SSSS-SSSS---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------S--------------------------------
------------------------------------S----------------------S-----------SS----S--
-----SS----SS-S-SS-S-SSSSSS-SS--------------------------------------------------
S---------------------------S----S-----------------S--S----SS----------S---S--S-
-----------------S----SSSSSSSSSSSSS--------------SSSS-S----------------------SSS
SSSSSSSSS----S---S--------SS----S-S------S-------S-S------------------S--------S
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_267
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-------TCGTACCACCGAAAGATGCC-----------------------------------------------------
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>reverse_2296
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-------------------------------------------------------CTGCACAGGTGTTTGGTTCG-----
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>forward_2044
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------------------------CTCTGCACCGAAGCAACAAC------------------------------------
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>reverse_3439
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------------------------------------------------------------------------------AG
CCACTTGAACCTTCGAGG--------------------------------------------------------------
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