Multiple sequence alignment - TraesCS6A01G352100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G352100 chr6A 100.000 3143 0 0 1 3143 584757216 584760358 0.000000e+00 5805.0
1 TraesCS6A01G352100 chr6A 99.752 1611 2 1 1391 2999 584717354 584715744 0.000000e+00 2952.0
2 TraesCS6A01G352100 chr6A 93.215 1636 71 20 742 2357 584695521 584693906 0.000000e+00 2370.0
3 TraesCS6A01G352100 chr6A 89.582 1459 108 15 742 2181 584593393 584594826 0.000000e+00 1812.0
4 TraesCS6A01G352100 chr6A 99.484 581 1 1 666 1244 584717945 584717365 0.000000e+00 1055.0
5 TraesCS6A01G352100 chr6A 82.913 357 28 20 2101 2446 584708808 584708474 1.100000e-74 291.0
6 TraesCS6A01G352100 chr6A 89.899 99 10 0 2742 2840 282417715 282417617 9.150000e-26 128.0
7 TraesCS6A01G352100 chr6D 90.548 1788 121 25 666 2425 436637995 436639762 0.000000e+00 2322.0
8 TraesCS6A01G352100 chr6D 86.790 1620 129 32 742 2329 436420919 436422485 0.000000e+00 1727.0
9 TraesCS6A01G352100 chr6D 87.863 758 53 21 581 1312 436474613 436473869 0.000000e+00 854.0
10 TraesCS6A01G352100 chr6D 88.704 301 27 4 2087 2382 436473881 436473583 8.290000e-96 361.0
11 TraesCS6A01G352100 chr6D 93.970 199 8 4 1 196 436531933 436531736 6.590000e-77 298.0
12 TraesCS6A01G352100 chr6D 95.000 140 7 0 230 369 436474676 436474537 1.470000e-53 220.0
13 TraesCS6A01G352100 chr6D 92.105 114 9 0 3030 3143 385787688 385787801 9.020000e-36 161.0
14 TraesCS6A01G352100 chr6B 91.477 1584 103 13 579 2144 659808562 659810131 0.000000e+00 2148.0
15 TraesCS6A01G352100 chr6B 85.732 827 71 24 1639 2448 659653863 659653067 0.000000e+00 830.0
16 TraesCS6A01G352100 chr6B 91.694 301 18 5 1 300 659808033 659808327 8.110000e-111 411.0
17 TraesCS6A01G352100 chr6B 93.478 184 8 2 2741 2920 688184880 688184697 1.440000e-68 270.0
18 TraesCS6A01G352100 chr3D 92.123 1498 76 16 664 2144 502158081 502159553 0.000000e+00 2074.0
19 TraesCS6A01G352100 chr3B 91.867 1500 82 20 664 2144 663573416 663574894 0.000000e+00 2058.0
20 TraesCS6A01G352100 chr3B 93.156 263 14 2 2741 2999 725539039 725539301 1.770000e-102 383.0
21 TraesCS6A01G352100 chr3B 89.109 101 10 1 2741 2840 638958887 638958787 1.180000e-24 124.0
22 TraesCS6A01G352100 chr4B 80.978 552 62 23 2457 2981 582565509 582566044 6.320000e-107 398.0
23 TraesCS6A01G352100 chr4B 89.474 76 7 1 2766 2840 456656604 456656679 9.280000e-16 95.3
24 TraesCS6A01G352100 chr5D 93.156 263 13 3 2741 2999 417671118 417671379 6.360000e-102 381.0
25 TraesCS6A01G352100 chr5D 80.727 275 40 10 2457 2729 478201608 478201345 5.320000e-48 202.0
26 TraesCS6A01G352100 chr4A 97.354 189 4 1 422 609 36289785 36289597 1.410000e-83 320.0
27 TraesCS6A01G352100 chr5A 79.394 495 47 26 2457 2929 399452794 399452333 6.590000e-77 298.0
28 TraesCS6A01G352100 chr5A 93.103 116 7 1 3028 3143 545598479 545598365 5.390000e-38 169.0
29 TraesCS6A01G352100 chr5A 90.598 117 9 2 3027 3143 605095513 605095399 1.510000e-33 154.0
30 TraesCS6A01G352100 chr1A 80.826 339 35 13 1998 2329 511606776 511607091 4.050000e-59 239.0
31 TraesCS6A01G352100 chr1A 91.379 116 8 2 3028 3143 538666620 538666733 1.170000e-34 158.0
32 TraesCS6A01G352100 chr7A 93.913 115 6 1 3029 3143 83726150 83726037 4.170000e-39 172.0
33 TraesCS6A01G352100 chr4D 92.308 117 7 2 3027 3143 474715740 474715626 6.970000e-37 165.0
34 TraesCS6A01G352100 chr1B 92.241 116 9 0 3028 3143 503673781 503673666 6.970000e-37 165.0
35 TraesCS6A01G352100 chr2B 91.453 117 10 0 3027 3143 781532786 781532902 9.020000e-36 161.0
36 TraesCS6A01G352100 chr2D 91.379 116 9 1 3028 3143 469504537 469504423 1.170000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G352100 chr6A 584757216 584760358 3142 False 5805.000000 5805 100.000000 1 3143 1 chr6A.!!$F2 3142
1 TraesCS6A01G352100 chr6A 584693906 584695521 1615 True 2370.000000 2370 93.215000 742 2357 1 chr6A.!!$R2 1615
2 TraesCS6A01G352100 chr6A 584715744 584717945 2201 True 2003.500000 2952 99.618000 666 2999 2 chr6A.!!$R4 2333
3 TraesCS6A01G352100 chr6A 584593393 584594826 1433 False 1812.000000 1812 89.582000 742 2181 1 chr6A.!!$F1 1439
4 TraesCS6A01G352100 chr6D 436637995 436639762 1767 False 2322.000000 2322 90.548000 666 2425 1 chr6D.!!$F3 1759
5 TraesCS6A01G352100 chr6D 436420919 436422485 1566 False 1727.000000 1727 86.790000 742 2329 1 chr6D.!!$F2 1587
6 TraesCS6A01G352100 chr6D 436473583 436474676 1093 True 478.333333 854 90.522333 230 2382 3 chr6D.!!$R2 2152
7 TraesCS6A01G352100 chr6B 659808033 659810131 2098 False 1279.500000 2148 91.585500 1 2144 2 chr6B.!!$F1 2143
8 TraesCS6A01G352100 chr6B 659653067 659653863 796 True 830.000000 830 85.732000 1639 2448 1 chr6B.!!$R1 809
9 TraesCS6A01G352100 chr3D 502158081 502159553 1472 False 2074.000000 2074 92.123000 664 2144 1 chr3D.!!$F1 1480
10 TraesCS6A01G352100 chr3B 663573416 663574894 1478 False 2058.000000 2058 91.867000 664 2144 1 chr3B.!!$F1 1480
11 TraesCS6A01G352100 chr4B 582565509 582566044 535 False 398.000000 398 80.978000 2457 2981 1 chr4B.!!$F2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 753 0.315886 TGTACCATGCTCGTCAACGT 59.684 50.0 2.09 0.0 40.8 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2605 2949 1.06281 GGGTAGACTCTGATCCTGGGT 60.063 57.143 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 554 7.044249 CGTTGATTTATAGACGGACTTGTAGTG 60.044 40.741 0.00 0.00 32.29 2.74
373 619 8.286191 AGAAAAGAAATTGCTATGAACTAGGG 57.714 34.615 0.00 0.00 0.00 3.53
374 620 7.890655 AGAAAAGAAATTGCTATGAACTAGGGT 59.109 33.333 0.00 0.00 0.00 4.34
375 621 7.631717 AAAGAAATTGCTATGAACTAGGGTC 57.368 36.000 0.00 0.00 0.00 4.46
376 622 6.567602 AGAAATTGCTATGAACTAGGGTCT 57.432 37.500 0.00 0.00 0.00 3.85
377 623 6.963322 AGAAATTGCTATGAACTAGGGTCTT 58.037 36.000 0.00 0.00 0.00 3.01
378 624 7.406104 AGAAATTGCTATGAACTAGGGTCTTT 58.594 34.615 0.00 0.00 0.00 2.52
379 625 7.890655 AGAAATTGCTATGAACTAGGGTCTTTT 59.109 33.333 0.00 0.00 0.00 2.27
380 626 7.631717 AATTGCTATGAACTAGGGTCTTTTC 57.368 36.000 0.00 0.00 0.00 2.29
381 627 4.755411 TGCTATGAACTAGGGTCTTTTCG 58.245 43.478 0.00 0.00 0.00 3.46
382 628 3.556365 GCTATGAACTAGGGTCTTTTCGC 59.444 47.826 0.00 0.00 0.00 4.70
383 629 3.983044 ATGAACTAGGGTCTTTTCGCT 57.017 42.857 0.00 0.00 34.99 4.93
384 630 3.764237 TGAACTAGGGTCTTTTCGCTT 57.236 42.857 0.00 0.00 32.95 4.68
385 631 4.877378 TGAACTAGGGTCTTTTCGCTTA 57.123 40.909 0.00 0.00 32.95 3.09
386 632 4.817517 TGAACTAGGGTCTTTTCGCTTAG 58.182 43.478 0.00 0.00 32.95 2.18
387 633 3.889520 ACTAGGGTCTTTTCGCTTAGG 57.110 47.619 0.00 0.00 32.95 2.69
388 634 2.093606 ACTAGGGTCTTTTCGCTTAGGC 60.094 50.000 0.00 0.00 32.95 3.93
402 648 4.680171 GCTTAGGCGTAGACAATTTGTT 57.320 40.909 3.08 0.00 39.87 2.83
403 649 5.043189 GCTTAGGCGTAGACAATTTGTTT 57.957 39.130 3.08 0.32 39.87 2.83
404 650 6.173191 GCTTAGGCGTAGACAATTTGTTTA 57.827 37.500 3.08 0.00 39.87 2.01
405 651 6.248631 GCTTAGGCGTAGACAATTTGTTTAG 58.751 40.000 3.08 0.00 39.87 1.85
406 652 6.091713 GCTTAGGCGTAGACAATTTGTTTAGA 59.908 38.462 3.08 0.00 39.87 2.10
407 653 7.591006 TTAGGCGTAGACAATTTGTTTAGAG 57.409 36.000 3.08 1.65 39.87 2.43
408 654 5.790593 AGGCGTAGACAATTTGTTTAGAGA 58.209 37.500 3.08 0.00 39.87 3.10
409 655 6.407202 AGGCGTAGACAATTTGTTTAGAGAT 58.593 36.000 3.08 0.00 39.87 2.75
410 656 6.313905 AGGCGTAGACAATTTGTTTAGAGATG 59.686 38.462 3.08 0.00 39.87 2.90
411 657 6.456988 GGCGTAGACAATTTGTTTAGAGATGG 60.457 42.308 3.08 0.00 31.66 3.51
412 658 6.478588 CGTAGACAATTTGTTTAGAGATGGC 58.521 40.000 3.08 0.00 0.00 4.40
413 659 5.904362 AGACAATTTGTTTAGAGATGGCC 57.096 39.130 3.08 0.00 0.00 5.36
414 660 5.574188 AGACAATTTGTTTAGAGATGGCCT 58.426 37.500 3.32 0.00 0.00 5.19
415 661 6.721318 AGACAATTTGTTTAGAGATGGCCTA 58.279 36.000 3.32 0.00 0.00 3.93
416 662 7.175104 AGACAATTTGTTTAGAGATGGCCTAA 58.825 34.615 3.32 0.00 0.00 2.69
417 663 7.669722 AGACAATTTGTTTAGAGATGGCCTAAA 59.330 33.333 3.32 0.00 34.72 1.85
418 664 8.189119 ACAATTTGTTTAGAGATGGCCTAAAA 57.811 30.769 3.32 0.00 37.70 1.52
419 665 8.088365 ACAATTTGTTTAGAGATGGCCTAAAAC 58.912 33.333 3.32 6.30 37.70 2.43
420 666 7.775053 ATTTGTTTAGAGATGGCCTAAAACA 57.225 32.000 3.32 8.77 37.70 2.83
421 667 6.569179 TTGTTTAGAGATGGCCTAAAACAC 57.431 37.500 3.32 0.00 39.01 3.32
422 668 5.626142 TGTTTAGAGATGGCCTAAAACACA 58.374 37.500 3.32 0.00 37.70 3.72
423 669 6.245408 TGTTTAGAGATGGCCTAAAACACAT 58.755 36.000 3.32 0.00 37.70 3.21
424 670 6.719370 TGTTTAGAGATGGCCTAAAACACATT 59.281 34.615 3.32 0.00 37.70 2.71
425 671 7.232534 TGTTTAGAGATGGCCTAAAACACATTT 59.767 33.333 3.32 0.00 37.70 2.32
426 672 8.736244 GTTTAGAGATGGCCTAAAACACATTTA 58.264 33.333 3.32 0.00 37.70 1.40
427 673 6.759497 AGAGATGGCCTAAAACACATTTAC 57.241 37.500 3.32 0.00 32.27 2.01
428 674 6.485171 AGAGATGGCCTAAAACACATTTACT 58.515 36.000 3.32 0.00 32.27 2.24
429 675 7.630082 AGAGATGGCCTAAAACACATTTACTA 58.370 34.615 3.32 0.00 32.27 1.82
430 676 8.275040 AGAGATGGCCTAAAACACATTTACTAT 58.725 33.333 3.32 0.00 32.27 2.12
431 677 9.555727 GAGATGGCCTAAAACACATTTACTATA 57.444 33.333 3.32 0.00 32.27 1.31
432 678 9.914834 AGATGGCCTAAAACACATTTACTATAA 57.085 29.630 3.32 0.00 32.27 0.98
433 679 9.946165 GATGGCCTAAAACACATTTACTATAAC 57.054 33.333 3.32 0.00 32.27 1.89
434 680 8.283699 TGGCCTAAAACACATTTACTATAACC 57.716 34.615 3.32 0.00 32.27 2.85
435 681 7.339976 TGGCCTAAAACACATTTACTATAACCC 59.660 37.037 3.32 0.00 32.27 4.11
436 682 7.558807 GGCCTAAAACACATTTACTATAACCCT 59.441 37.037 0.00 0.00 32.27 4.34
437 683 8.963725 GCCTAAAACACATTTACTATAACCCTT 58.036 33.333 0.00 0.00 32.27 3.95
457 703 9.547279 AACCCTTTTATTGAGATTAGAATGGTT 57.453 29.630 0.00 0.00 0.00 3.67
458 704 8.971073 ACCCTTTTATTGAGATTAGAATGGTTG 58.029 33.333 0.00 0.00 0.00 3.77
459 705 8.971073 CCCTTTTATTGAGATTAGAATGGTTGT 58.029 33.333 0.00 0.00 0.00 3.32
467 713 9.959749 TTGAGATTAGAATGGTTGTACAAAAAC 57.040 29.630 10.51 4.63 0.00 2.43
468 714 8.573035 TGAGATTAGAATGGTTGTACAAAAACC 58.427 33.333 10.51 9.11 46.13 3.27
497 743 8.458843 ACTCTAATTTTTGTATGTGTACCATGC 58.541 33.333 6.99 6.36 36.76 4.06
498 744 8.574251 TCTAATTTTTGTATGTGTACCATGCT 57.426 30.769 11.54 0.00 37.11 3.79
499 745 8.673711 TCTAATTTTTGTATGTGTACCATGCTC 58.326 33.333 11.54 3.35 37.11 4.26
500 746 4.937696 TTTTGTATGTGTACCATGCTCG 57.062 40.909 11.54 0.00 37.11 5.03
501 747 3.603158 TTGTATGTGTACCATGCTCGT 57.397 42.857 11.54 0.00 37.11 4.18
502 748 3.159353 TGTATGTGTACCATGCTCGTC 57.841 47.619 11.54 0.00 37.11 4.20
503 749 2.494073 TGTATGTGTACCATGCTCGTCA 59.506 45.455 11.54 0.00 37.11 4.35
504 750 2.760634 ATGTGTACCATGCTCGTCAA 57.239 45.000 0.00 0.00 30.69 3.18
505 751 1.790755 TGTGTACCATGCTCGTCAAC 58.209 50.000 0.00 0.00 0.00 3.18
506 752 0.713883 GTGTACCATGCTCGTCAACG 59.286 55.000 0.00 0.00 41.45 4.10
507 753 0.315886 TGTACCATGCTCGTCAACGT 59.684 50.000 2.09 0.00 40.80 3.99
508 754 1.540707 TGTACCATGCTCGTCAACGTA 59.459 47.619 2.09 0.00 40.80 3.57
509 755 1.916000 GTACCATGCTCGTCAACGTAC 59.084 52.381 2.09 0.00 40.80 3.67
510 756 0.601558 ACCATGCTCGTCAACGTACT 59.398 50.000 2.09 0.00 40.80 2.73
511 757 1.814394 ACCATGCTCGTCAACGTACTA 59.186 47.619 2.09 0.00 40.80 1.82
512 758 2.182825 CCATGCTCGTCAACGTACTAC 58.817 52.381 2.09 0.00 40.80 2.73
513 759 2.159421 CCATGCTCGTCAACGTACTACT 60.159 50.000 2.09 0.00 40.80 2.57
514 760 2.606717 TGCTCGTCAACGTACTACTG 57.393 50.000 2.09 0.00 40.80 2.74
515 761 1.198408 TGCTCGTCAACGTACTACTGG 59.802 52.381 2.09 0.00 40.80 4.00
516 762 1.198637 GCTCGTCAACGTACTACTGGT 59.801 52.381 2.09 0.00 40.80 4.00
517 763 2.416547 GCTCGTCAACGTACTACTGGTA 59.583 50.000 2.09 0.00 40.80 3.25
518 764 3.064545 GCTCGTCAACGTACTACTGGTAT 59.935 47.826 2.09 0.00 40.80 2.73
519 765 4.585364 CTCGTCAACGTACTACTGGTATG 58.415 47.826 2.09 0.00 41.73 2.39
520 766 4.252878 TCGTCAACGTACTACTGGTATGA 58.747 43.478 2.09 0.00 39.17 2.15
521 767 4.694982 TCGTCAACGTACTACTGGTATGAA 59.305 41.667 2.09 0.00 39.17 2.57
522 768 5.355071 TCGTCAACGTACTACTGGTATGAAT 59.645 40.000 2.09 0.00 39.17 2.57
523 769 6.032094 CGTCAACGTACTACTGGTATGAATT 58.968 40.000 0.00 0.00 39.17 2.17
524 770 6.529125 CGTCAACGTACTACTGGTATGAATTT 59.471 38.462 0.00 0.00 39.17 1.82
525 771 7.253552 CGTCAACGTACTACTGGTATGAATTTC 60.254 40.741 0.00 0.00 39.17 2.17
526 772 7.758528 GTCAACGTACTACTGGTATGAATTTCT 59.241 37.037 0.00 0.00 39.17 2.52
527 773 7.758076 TCAACGTACTACTGGTATGAATTTCTG 59.242 37.037 0.00 0.00 39.17 3.02
528 774 6.040878 ACGTACTACTGGTATGAATTTCTGC 58.959 40.000 0.00 0.00 39.17 4.26
529 775 6.127423 ACGTACTACTGGTATGAATTTCTGCT 60.127 38.462 0.00 0.00 39.17 4.24
530 776 7.067859 ACGTACTACTGGTATGAATTTCTGCTA 59.932 37.037 0.00 0.00 39.17 3.49
531 777 7.591795 CGTACTACTGGTATGAATTTCTGCTAG 59.408 40.741 0.00 0.00 39.17 3.42
532 778 7.661536 ACTACTGGTATGAATTTCTGCTAGA 57.338 36.000 0.00 0.00 0.00 2.43
533 779 7.493367 ACTACTGGTATGAATTTCTGCTAGAC 58.507 38.462 0.00 0.00 0.00 2.59
534 780 5.675538 ACTGGTATGAATTTCTGCTAGACC 58.324 41.667 0.00 0.00 0.00 3.85
535 781 5.426833 ACTGGTATGAATTTCTGCTAGACCT 59.573 40.000 0.00 0.00 0.00 3.85
536 782 5.918608 TGGTATGAATTTCTGCTAGACCTC 58.081 41.667 0.00 0.00 0.00 3.85
537 783 5.425217 TGGTATGAATTTCTGCTAGACCTCA 59.575 40.000 0.00 0.00 0.00 3.86
538 784 6.100279 TGGTATGAATTTCTGCTAGACCTCAT 59.900 38.462 0.00 0.00 0.00 2.90
539 785 6.648725 GGTATGAATTTCTGCTAGACCTCATC 59.351 42.308 0.00 0.00 0.00 2.92
540 786 4.686972 TGAATTTCTGCTAGACCTCATCG 58.313 43.478 0.00 0.00 0.00 3.84
541 787 4.160439 TGAATTTCTGCTAGACCTCATCGT 59.840 41.667 0.00 0.00 0.00 3.73
542 788 3.510388 TTTCTGCTAGACCTCATCGTG 57.490 47.619 0.00 0.00 0.00 4.35
543 789 1.393603 TCTGCTAGACCTCATCGTGG 58.606 55.000 0.00 0.00 0.00 4.94
544 790 0.387202 CTGCTAGACCTCATCGTGGG 59.613 60.000 0.00 0.00 0.00 4.61
545 791 1.068250 GCTAGACCTCATCGTGGGC 59.932 63.158 0.00 0.00 0.00 5.36
546 792 1.742768 CTAGACCTCATCGTGGGCC 59.257 63.158 0.00 0.00 31.51 5.80
547 793 0.757188 CTAGACCTCATCGTGGGCCT 60.757 60.000 4.53 0.00 31.51 5.19
548 794 0.755698 TAGACCTCATCGTGGGCCTC 60.756 60.000 4.53 0.00 31.51 4.70
549 795 2.039624 ACCTCATCGTGGGCCTCT 59.960 61.111 4.53 0.00 0.00 3.69
550 796 2.303549 GACCTCATCGTGGGCCTCTG 62.304 65.000 4.53 0.00 0.00 3.35
551 797 2.362369 CCTCATCGTGGGCCTCTGT 61.362 63.158 4.53 0.00 0.00 3.41
552 798 1.153489 CTCATCGTGGGCCTCTGTG 60.153 63.158 4.53 2.91 0.00 3.66
553 799 1.892819 CTCATCGTGGGCCTCTGTGT 61.893 60.000 4.53 0.00 0.00 3.72
554 800 1.448540 CATCGTGGGCCTCTGTGTC 60.449 63.158 4.53 0.00 0.00 3.67
555 801 3.006756 ATCGTGGGCCTCTGTGTCG 62.007 63.158 4.53 0.00 0.00 4.35
556 802 3.991051 CGTGGGCCTCTGTGTCGT 61.991 66.667 4.53 0.00 0.00 4.34
557 803 2.357517 GTGGGCCTCTGTGTCGTG 60.358 66.667 4.53 0.00 0.00 4.35
558 804 3.625897 TGGGCCTCTGTGTCGTGG 61.626 66.667 4.53 0.00 0.00 4.94
562 808 4.742201 CCTCTGTGTCGTGGCCGG 62.742 72.222 0.00 0.00 33.95 6.13
563 809 4.742201 CTCTGTGTCGTGGCCGGG 62.742 72.222 2.18 0.00 33.95 5.73
570 816 4.652131 TCGTGGCCGGGCACAATT 62.652 61.111 46.80 0.00 33.95 2.32
571 817 4.114997 CGTGGCCGGGCACAATTC 62.115 66.667 46.80 28.69 0.00 2.17
572 818 4.114997 GTGGCCGGGCACAATTCG 62.115 66.667 45.52 0.00 0.00 3.34
573 819 4.337177 TGGCCGGGCACAATTCGA 62.337 61.111 29.27 0.25 0.00 3.71
574 820 3.059386 GGCCGGGCACAATTCGAA 61.059 61.111 25.33 0.00 0.00 3.71
575 821 2.414785 GGCCGGGCACAATTCGAAT 61.415 57.895 25.33 4.39 0.00 3.34
576 822 1.226660 GCCGGGCACAATTCGAATG 60.227 57.895 15.62 8.57 0.00 2.67
577 823 1.933115 GCCGGGCACAATTCGAATGT 61.933 55.000 15.62 9.21 0.00 2.71
578 824 0.525761 CCGGGCACAATTCGAATGTT 59.474 50.000 12.25 0.00 0.00 2.71
579 825 1.616620 CGGGCACAATTCGAATGTTG 58.383 50.000 12.25 12.56 0.00 3.33
580 826 1.068610 CGGGCACAATTCGAATGTTGT 60.069 47.619 12.25 11.29 39.00 3.32
581 827 2.160615 CGGGCACAATTCGAATGTTGTA 59.839 45.455 12.25 0.00 36.48 2.41
582 828 3.727673 CGGGCACAATTCGAATGTTGTAG 60.728 47.826 12.25 9.75 36.48 2.74
583 829 3.438781 GGGCACAATTCGAATGTTGTAGA 59.561 43.478 12.25 0.00 36.48 2.59
584 830 4.403453 GGCACAATTCGAATGTTGTAGAC 58.597 43.478 12.25 7.60 36.48 2.59
585 831 4.081761 GCACAATTCGAATGTTGTAGACG 58.918 43.478 12.25 3.72 36.48 4.18
586 832 4.637968 CACAATTCGAATGTTGTAGACGG 58.362 43.478 12.25 0.00 36.48 4.79
587 833 4.387559 CACAATTCGAATGTTGTAGACGGA 59.612 41.667 12.25 0.00 36.48 4.69
588 834 4.387862 ACAATTCGAATGTTGTAGACGGAC 59.612 41.667 12.25 0.00 36.83 4.79
589 835 3.928727 TTCGAATGTTGTAGACGGACT 57.071 42.857 0.00 0.00 0.00 3.85
590 836 3.928727 TCGAATGTTGTAGACGGACTT 57.071 42.857 0.00 0.00 0.00 3.01
591 837 3.571571 TCGAATGTTGTAGACGGACTTG 58.428 45.455 0.00 0.00 0.00 3.16
592 838 3.005050 TCGAATGTTGTAGACGGACTTGT 59.995 43.478 0.00 0.00 0.00 3.16
593 839 4.216042 TCGAATGTTGTAGACGGACTTGTA 59.784 41.667 0.00 0.00 0.00 2.41
594 840 4.557690 CGAATGTTGTAGACGGACTTGTAG 59.442 45.833 0.00 0.00 0.00 2.74
595 841 5.464030 AATGTTGTAGACGGACTTGTAGT 57.536 39.130 0.00 0.00 0.00 2.73
596 842 6.579666 AATGTTGTAGACGGACTTGTAGTA 57.420 37.500 0.00 0.00 0.00 1.82
597 843 5.618056 TGTTGTAGACGGACTTGTAGTAG 57.382 43.478 0.00 0.00 0.00 2.57
598 844 5.308014 TGTTGTAGACGGACTTGTAGTAGA 58.692 41.667 0.00 0.00 0.00 2.59
599 845 5.764686 TGTTGTAGACGGACTTGTAGTAGAA 59.235 40.000 0.00 0.00 0.00 2.10
600 846 6.072838 TGTTGTAGACGGACTTGTAGTAGAAG 60.073 42.308 5.53 5.53 0.00 2.85
601 847 4.394300 TGTAGACGGACTTGTAGTAGAAGC 59.606 45.833 6.95 0.86 0.00 3.86
608 854 5.408604 CGGACTTGTAGTAGAAGCAAATTGT 59.591 40.000 6.95 0.00 0.00 2.71
609 855 6.073222 CGGACTTGTAGTAGAAGCAAATTGTT 60.073 38.462 6.95 0.00 0.00 2.83
619 865 5.079643 AGAAGCAAATTGTTATGGACACCT 58.920 37.500 0.00 0.00 38.18 4.00
620 866 5.539955 AGAAGCAAATTGTTATGGACACCTT 59.460 36.000 0.00 0.00 38.18 3.50
621 867 5.391312 AGCAAATTGTTATGGACACCTTC 57.609 39.130 0.00 0.00 38.18 3.46
623 869 4.620567 GCAAATTGTTATGGACACCTTCCC 60.621 45.833 0.00 0.00 45.17 3.97
624 870 4.675063 AATTGTTATGGACACCTTCCCT 57.325 40.909 0.00 0.00 45.17 4.20
625 871 3.713826 TTGTTATGGACACCTTCCCTC 57.286 47.619 0.00 0.00 45.17 4.30
626 872 2.626785 TGTTATGGACACCTTCCCTCA 58.373 47.619 0.00 0.00 45.17 3.86
627 873 2.983192 TGTTATGGACACCTTCCCTCAA 59.017 45.455 0.00 0.00 45.17 3.02
628 874 3.396276 TGTTATGGACACCTTCCCTCAAA 59.604 43.478 0.00 0.00 45.17 2.69
629 875 4.141135 TGTTATGGACACCTTCCCTCAAAA 60.141 41.667 0.00 0.00 45.17 2.44
630 876 3.611025 ATGGACACCTTCCCTCAAAAA 57.389 42.857 0.00 0.00 45.17 1.94
631 877 2.944129 TGGACACCTTCCCTCAAAAAG 58.056 47.619 0.00 0.00 45.17 2.27
632 878 2.512056 TGGACACCTTCCCTCAAAAAGA 59.488 45.455 0.00 0.00 45.17 2.52
633 879 3.053245 TGGACACCTTCCCTCAAAAAGAA 60.053 43.478 0.00 0.00 45.17 2.52
634 880 3.958147 GGACACCTTCCCTCAAAAAGAAA 59.042 43.478 0.00 0.00 38.70 2.52
635 881 4.404394 GGACACCTTCCCTCAAAAAGAAAA 59.596 41.667 0.00 0.00 38.70 2.29
636 882 5.451937 GGACACCTTCCCTCAAAAAGAAAAG 60.452 44.000 0.00 0.00 38.70 2.27
637 883 5.269189 ACACCTTCCCTCAAAAAGAAAAGA 58.731 37.500 0.00 0.00 0.00 2.52
638 884 5.719563 ACACCTTCCCTCAAAAAGAAAAGAA 59.280 36.000 0.00 0.00 0.00 2.52
639 885 6.212589 ACACCTTCCCTCAAAAAGAAAAGAAA 59.787 34.615 0.00 0.00 0.00 2.52
640 886 6.758416 CACCTTCCCTCAAAAAGAAAAGAAAG 59.242 38.462 0.00 0.00 0.00 2.62
641 887 6.667848 ACCTTCCCTCAAAAAGAAAAGAAAGA 59.332 34.615 0.00 0.00 0.00 2.52
642 888 7.180229 ACCTTCCCTCAAAAAGAAAAGAAAGAA 59.820 33.333 0.00 0.00 0.00 2.52
643 889 8.040727 CCTTCCCTCAAAAAGAAAAGAAAGAAA 58.959 33.333 0.00 0.00 0.00 2.52
644 890 9.435688 CTTCCCTCAAAAAGAAAAGAAAGAAAA 57.564 29.630 0.00 0.00 0.00 2.29
645 891 9.958180 TTCCCTCAAAAAGAAAAGAAAGAAAAT 57.042 25.926 0.00 0.00 0.00 1.82
646 892 9.958180 TCCCTCAAAAAGAAAAGAAAGAAAATT 57.042 25.926 0.00 0.00 0.00 1.82
647 893 9.992910 CCCTCAAAAAGAAAAGAAAGAAAATTG 57.007 29.630 0.00 0.00 0.00 2.32
648 894 9.494479 CCTCAAAAAGAAAAGAAAGAAAATTGC 57.506 29.630 0.00 0.00 0.00 3.56
658 904 3.782889 AAGAAAATTGCTATGGGCGTC 57.217 42.857 0.00 0.00 45.43 5.19
2689 3034 1.821241 CTCTCGCTCTCTCTCGCTCG 61.821 65.000 0.00 0.00 0.00 5.03
2999 3400 1.070134 TCAAGTCAAGACCGGTTCCTG 59.930 52.381 9.42 6.88 0.00 3.86
3000 3401 0.250338 AAGTCAAGACCGGTTCCTGC 60.250 55.000 9.42 0.00 0.00 4.85
3001 3402 1.671379 GTCAAGACCGGTTCCTGCC 60.671 63.158 9.42 0.00 0.00 4.85
3002 3403 1.841556 TCAAGACCGGTTCCTGCCT 60.842 57.895 9.42 0.00 0.00 4.75
3003 3404 1.376037 CAAGACCGGTTCCTGCCTC 60.376 63.158 9.42 0.00 0.00 4.70
3004 3405 2.593956 AAGACCGGTTCCTGCCTCC 61.594 63.158 9.42 0.00 0.00 4.30
3005 3406 3.319198 GACCGGTTCCTGCCTCCA 61.319 66.667 9.42 0.00 0.00 3.86
3006 3407 2.852075 ACCGGTTCCTGCCTCCAA 60.852 61.111 0.00 0.00 0.00 3.53
3007 3408 2.359975 CCGGTTCCTGCCTCCAAC 60.360 66.667 0.00 0.00 0.00 3.77
3008 3409 2.429930 CGGTTCCTGCCTCCAACA 59.570 61.111 0.00 0.00 0.00 3.33
3009 3410 1.228124 CGGTTCCTGCCTCCAACAA 60.228 57.895 0.00 0.00 0.00 2.83
3010 3411 1.515521 CGGTTCCTGCCTCCAACAAC 61.516 60.000 0.00 0.00 0.00 3.32
3011 3412 0.467290 GGTTCCTGCCTCCAACAACA 60.467 55.000 0.00 0.00 0.00 3.33
3012 3413 1.398692 GTTCCTGCCTCCAACAACAA 58.601 50.000 0.00 0.00 0.00 2.83
3013 3414 1.754226 GTTCCTGCCTCCAACAACAAA 59.246 47.619 0.00 0.00 0.00 2.83
3014 3415 1.398692 TCCTGCCTCCAACAACAAAC 58.601 50.000 0.00 0.00 0.00 2.93
3015 3416 0.389025 CCTGCCTCCAACAACAAACC 59.611 55.000 0.00 0.00 0.00 3.27
3016 3417 1.402787 CTGCCTCCAACAACAAACCT 58.597 50.000 0.00 0.00 0.00 3.50
3017 3418 1.338020 CTGCCTCCAACAACAAACCTC 59.662 52.381 0.00 0.00 0.00 3.85
3018 3419 0.673985 GCCTCCAACAACAAACCTCC 59.326 55.000 0.00 0.00 0.00 4.30
3019 3420 2.026905 GCCTCCAACAACAAACCTCCA 61.027 52.381 0.00 0.00 0.00 3.86
3020 3421 1.681264 CCTCCAACAACAAACCTCCAC 59.319 52.381 0.00 0.00 0.00 4.02
3021 3422 2.374184 CTCCAACAACAAACCTCCACA 58.626 47.619 0.00 0.00 0.00 4.17
3022 3423 2.958355 CTCCAACAACAAACCTCCACAT 59.042 45.455 0.00 0.00 0.00 3.21
3023 3424 2.955660 TCCAACAACAAACCTCCACATC 59.044 45.455 0.00 0.00 0.00 3.06
3024 3425 2.958355 CCAACAACAAACCTCCACATCT 59.042 45.455 0.00 0.00 0.00 2.90
3025 3426 3.243501 CCAACAACAAACCTCCACATCTG 60.244 47.826 0.00 0.00 0.00 2.90
3026 3427 2.586425 ACAACAAACCTCCACATCTGG 58.414 47.619 0.00 0.00 39.23 3.86
3027 3428 1.270550 CAACAAACCTCCACATCTGGC 59.729 52.381 0.00 0.00 37.49 4.85
3028 3429 0.606401 ACAAACCTCCACATCTGGCG 60.606 55.000 0.00 0.00 37.49 5.69
3029 3430 1.002134 AAACCTCCACATCTGGCGG 60.002 57.895 0.00 0.00 46.80 6.13
3030 3431 1.488705 AAACCTCCACATCTGGCGGA 61.489 55.000 2.66 0.00 44.48 5.54
3031 3432 1.488705 AACCTCCACATCTGGCGGAA 61.489 55.000 2.66 0.00 44.48 4.30
3032 3433 1.299648 CCTCCACATCTGGCGGAAA 59.700 57.895 0.00 0.00 44.48 3.13
3033 3434 0.322456 CCTCCACATCTGGCGGAAAA 60.322 55.000 0.00 0.00 44.48 2.29
3034 3435 1.089920 CTCCACATCTGGCGGAAAAG 58.910 55.000 0.00 0.00 37.49 2.27
3035 3436 0.400213 TCCACATCTGGCGGAAAAGT 59.600 50.000 0.00 0.00 37.49 2.66
3036 3437 1.626321 TCCACATCTGGCGGAAAAGTA 59.374 47.619 0.00 0.00 37.49 2.24
3037 3438 2.009774 CCACATCTGGCGGAAAAGTAG 58.990 52.381 0.00 0.00 0.00 2.57
3038 3439 2.009774 CACATCTGGCGGAAAAGTAGG 58.990 52.381 0.00 0.00 0.00 3.18
3039 3440 1.906574 ACATCTGGCGGAAAAGTAGGA 59.093 47.619 0.00 0.00 0.00 2.94
3040 3441 2.505819 ACATCTGGCGGAAAAGTAGGAT 59.494 45.455 0.00 0.00 0.00 3.24
3041 3442 2.981859 TCTGGCGGAAAAGTAGGATC 57.018 50.000 0.00 0.00 0.00 3.36
3042 3443 1.136305 TCTGGCGGAAAAGTAGGATCG 59.864 52.381 0.00 0.00 0.00 3.69
3043 3444 0.461339 TGGCGGAAAAGTAGGATCGC 60.461 55.000 0.00 0.00 42.02 4.58
3044 3445 0.179081 GGCGGAAAAGTAGGATCGCT 60.179 55.000 0.00 0.00 42.33 4.93
3045 3446 1.209998 GCGGAAAAGTAGGATCGCTC 58.790 55.000 0.00 0.00 40.00 5.03
3046 3447 1.854227 CGGAAAAGTAGGATCGCTCC 58.146 55.000 0.00 0.00 42.43 4.70
3047 3448 1.136305 CGGAAAAGTAGGATCGCTCCA 59.864 52.381 8.23 0.00 44.79 3.86
3048 3449 2.799917 CGGAAAAGTAGGATCGCTCCAG 60.800 54.545 8.23 0.00 44.79 3.86
3049 3450 2.431057 GGAAAAGTAGGATCGCTCCAGA 59.569 50.000 8.23 0.00 44.79 3.86
3050 3451 3.449632 GAAAAGTAGGATCGCTCCAGAC 58.550 50.000 8.23 5.22 44.79 3.51
3051 3452 1.025812 AAGTAGGATCGCTCCAGACG 58.974 55.000 8.23 0.00 44.79 4.18
3052 3453 0.180642 AGTAGGATCGCTCCAGACGA 59.819 55.000 8.23 0.00 44.79 4.20
3057 3458 3.955291 ATCGCTCCAGACGATCAAG 57.045 52.632 0.00 0.00 46.80 3.02
3058 3459 0.387202 ATCGCTCCAGACGATCAAGG 59.613 55.000 0.00 0.00 46.80 3.61
3059 3460 1.227089 CGCTCCAGACGATCAAGGG 60.227 63.158 0.00 0.00 0.00 3.95
3060 3461 1.667154 CGCTCCAGACGATCAAGGGA 61.667 60.000 0.00 0.00 0.00 4.20
3061 3462 0.537188 GCTCCAGACGATCAAGGGAA 59.463 55.000 0.00 0.00 0.00 3.97
3062 3463 1.472376 GCTCCAGACGATCAAGGGAAG 60.472 57.143 0.00 0.00 0.00 3.46
3063 3464 0.537188 TCCAGACGATCAAGGGAAGC 59.463 55.000 0.00 0.00 0.00 3.86
3064 3465 0.807667 CCAGACGATCAAGGGAAGCG 60.808 60.000 0.00 0.00 0.00 4.68
3065 3466 0.173481 CAGACGATCAAGGGAAGCGA 59.827 55.000 0.00 0.00 0.00 4.93
3066 3467 0.173708 AGACGATCAAGGGAAGCGAC 59.826 55.000 0.00 0.00 0.00 5.19
3067 3468 1.140407 GACGATCAAGGGAAGCGACG 61.140 60.000 0.00 0.00 0.00 5.12
3068 3469 1.138883 CGATCAAGGGAAGCGACGA 59.861 57.895 0.00 0.00 0.00 4.20
3069 3470 0.867753 CGATCAAGGGAAGCGACGAG 60.868 60.000 0.00 0.00 0.00 4.18
3070 3471 0.528684 GATCAAGGGAAGCGACGAGG 60.529 60.000 0.00 0.00 0.00 4.63
3071 3472 1.961180 ATCAAGGGAAGCGACGAGGG 61.961 60.000 0.00 0.00 0.00 4.30
3072 3473 2.603776 AAGGGAAGCGACGAGGGT 60.604 61.111 0.00 0.00 0.00 4.34
3073 3474 2.214920 AAGGGAAGCGACGAGGGTT 61.215 57.895 0.00 0.00 0.00 4.11
3074 3475 2.125633 GGGAAGCGACGAGGGTTC 60.126 66.667 0.00 11.90 42.22 3.62
3076 3477 2.125633 GAAGCGACGAGGGTTCCC 60.126 66.667 0.00 0.00 38.22 3.97
3077 3478 2.603776 AAGCGACGAGGGTTCCCT 60.604 61.111 10.51 10.51 39.51 4.20
3078 3479 2.168666 GAAGCGACGAGGGTTCCCTT 62.169 60.000 12.04 0.00 38.22 3.95
3079 3480 2.434359 GCGACGAGGGTTCCCTTG 60.434 66.667 20.35 20.35 42.06 3.61
3080 3481 2.434359 CGACGAGGGTTCCCTTGC 60.434 66.667 21.52 14.36 40.45 4.01
3081 3482 2.434359 GACGAGGGTTCCCTTGCG 60.434 66.667 21.52 17.93 40.45 4.85
3082 3483 4.699522 ACGAGGGTTCCCTTGCGC 62.700 66.667 21.52 0.00 40.45 6.09
3109 3510 4.790861 GACGCCGTCGGTTCCCTC 62.791 72.222 13.94 0.00 40.69 4.30
3111 3512 4.493747 CGCCGTCGGTTCCCTCTC 62.494 72.222 13.94 0.00 0.00 3.20
3112 3513 3.069318 GCCGTCGGTTCCCTCTCT 61.069 66.667 13.94 0.00 0.00 3.10
3113 3514 3.066233 GCCGTCGGTTCCCTCTCTC 62.066 68.421 13.94 0.00 0.00 3.20
3114 3515 1.378778 CCGTCGGTTCCCTCTCTCT 60.379 63.158 2.08 0.00 0.00 3.10
3115 3516 0.966370 CCGTCGGTTCCCTCTCTCTT 60.966 60.000 2.08 0.00 0.00 2.85
3116 3517 0.452585 CGTCGGTTCCCTCTCTCTTC 59.547 60.000 0.00 0.00 0.00 2.87
3117 3518 0.452585 GTCGGTTCCCTCTCTCTTCG 59.547 60.000 0.00 0.00 0.00 3.79
3118 3519 0.037877 TCGGTTCCCTCTCTCTTCGT 59.962 55.000 0.00 0.00 0.00 3.85
3119 3520 0.452585 CGGTTCCCTCTCTCTTCGTC 59.547 60.000 0.00 0.00 0.00 4.20
3120 3521 0.452585 GGTTCCCTCTCTCTTCGTCG 59.547 60.000 0.00 0.00 0.00 5.12
3121 3522 1.451067 GTTCCCTCTCTCTTCGTCGA 58.549 55.000 0.00 0.00 0.00 4.20
3122 3523 1.130938 GTTCCCTCTCTCTTCGTCGAC 59.869 57.143 5.18 5.18 0.00 4.20
3123 3524 0.392729 TCCCTCTCTCTTCGTCGACC 60.393 60.000 10.58 0.00 0.00 4.79
3124 3525 1.707239 CCCTCTCTCTTCGTCGACCG 61.707 65.000 10.58 5.50 38.13 4.79
3125 3526 1.061253 CTCTCTCTTCGTCGACCGC 59.939 63.158 10.58 0.00 36.19 5.68
3126 3527 1.363145 CTCTCTCTTCGTCGACCGCT 61.363 60.000 10.58 0.00 36.19 5.52
3127 3528 1.061253 CTCTCTTCGTCGACCGCTC 59.939 63.158 10.58 0.00 36.19 5.03
3128 3529 1.363145 CTCTCTTCGTCGACCGCTCT 61.363 60.000 10.58 0.00 36.19 4.09
3129 3530 1.226156 CTCTTCGTCGACCGCTCTG 60.226 63.158 10.58 0.00 36.19 3.35
3130 3531 2.202492 CTTCGTCGACCGCTCTGG 60.202 66.667 10.58 0.00 46.41 3.86
3131 3532 4.415332 TTCGTCGACCGCTCTGGC 62.415 66.667 10.58 0.00 43.94 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 241 5.259632 AGCTTGCACTTCCTTCTTTATCAT 58.740 37.500 0.00 0.00 0.00 2.45
366 612 3.619242 GCCTAAGCGAAAAGACCCTAGTT 60.619 47.826 0.00 0.00 0.00 2.24
369 615 2.685850 GCCTAAGCGAAAAGACCCTA 57.314 50.000 0.00 0.00 0.00 3.53
370 616 3.553109 GCCTAAGCGAAAAGACCCT 57.447 52.632 0.00 0.00 0.00 4.34
381 627 4.680171 AACAAATTGTCTACGCCTAAGC 57.320 40.909 0.00 0.00 0.00 3.09
382 628 7.544566 TCTCTAAACAAATTGTCTACGCCTAAG 59.455 37.037 0.00 0.00 0.00 2.18
383 629 7.380536 TCTCTAAACAAATTGTCTACGCCTAA 58.619 34.615 0.00 0.00 0.00 2.69
384 630 6.927416 TCTCTAAACAAATTGTCTACGCCTA 58.073 36.000 0.00 0.00 0.00 3.93
385 631 5.790593 TCTCTAAACAAATTGTCTACGCCT 58.209 37.500 0.00 0.00 0.00 5.52
386 632 6.456988 CCATCTCTAAACAAATTGTCTACGCC 60.457 42.308 0.00 0.00 0.00 5.68
387 633 6.478588 CCATCTCTAAACAAATTGTCTACGC 58.521 40.000 0.00 0.00 0.00 4.42
388 634 6.456988 GGCCATCTCTAAACAAATTGTCTACG 60.457 42.308 0.00 0.00 0.00 3.51
389 635 6.599638 AGGCCATCTCTAAACAAATTGTCTAC 59.400 38.462 5.01 0.00 0.00 2.59
390 636 6.721318 AGGCCATCTCTAAACAAATTGTCTA 58.279 36.000 5.01 0.00 0.00 2.59
391 637 5.574188 AGGCCATCTCTAAACAAATTGTCT 58.426 37.500 5.01 0.00 0.00 3.41
392 638 5.904362 AGGCCATCTCTAAACAAATTGTC 57.096 39.130 5.01 0.00 0.00 3.18
393 639 7.775053 TTTAGGCCATCTCTAAACAAATTGT 57.225 32.000 5.01 0.00 33.37 2.71
394 640 8.087750 TGTTTTAGGCCATCTCTAAACAAATTG 58.912 33.333 5.01 0.00 37.28 2.32
395 641 8.088365 GTGTTTTAGGCCATCTCTAAACAAATT 58.912 33.333 5.01 0.00 39.56 1.82
396 642 7.232534 TGTGTTTTAGGCCATCTCTAAACAAAT 59.767 33.333 5.01 0.00 39.56 2.32
397 643 6.547880 TGTGTTTTAGGCCATCTCTAAACAAA 59.452 34.615 5.01 4.51 39.56 2.83
398 644 6.065374 TGTGTTTTAGGCCATCTCTAAACAA 58.935 36.000 5.01 1.60 39.56 2.83
399 645 5.626142 TGTGTTTTAGGCCATCTCTAAACA 58.374 37.500 5.01 9.01 37.58 2.83
400 646 6.759497 ATGTGTTTTAGGCCATCTCTAAAC 57.241 37.500 5.01 6.49 36.70 2.01
401 647 7.775053 AAATGTGTTTTAGGCCATCTCTAAA 57.225 32.000 5.01 0.00 35.61 1.85
402 648 8.107095 AGTAAATGTGTTTTAGGCCATCTCTAA 58.893 33.333 5.01 0.00 30.46 2.10
403 649 7.630082 AGTAAATGTGTTTTAGGCCATCTCTA 58.370 34.615 5.01 0.00 30.46 2.43
404 650 6.485171 AGTAAATGTGTTTTAGGCCATCTCT 58.515 36.000 5.01 0.00 30.46 3.10
405 651 6.759497 AGTAAATGTGTTTTAGGCCATCTC 57.241 37.500 5.01 0.00 30.46 2.75
406 652 9.914834 TTATAGTAAATGTGTTTTAGGCCATCT 57.085 29.630 5.01 0.00 30.46 2.90
407 653 9.946165 GTTATAGTAAATGTGTTTTAGGCCATC 57.054 33.333 5.01 0.00 30.46 3.51
408 654 8.909923 GGTTATAGTAAATGTGTTTTAGGCCAT 58.090 33.333 5.01 0.00 30.46 4.40
409 655 7.339976 GGGTTATAGTAAATGTGTTTTAGGCCA 59.660 37.037 5.01 0.00 30.46 5.36
410 656 7.558807 AGGGTTATAGTAAATGTGTTTTAGGCC 59.441 37.037 0.00 0.00 30.46 5.19
411 657 8.515695 AGGGTTATAGTAAATGTGTTTTAGGC 57.484 34.615 0.00 0.00 30.46 3.93
431 677 9.547279 AACCATTCTAATCTCAATAAAAGGGTT 57.453 29.630 0.00 0.00 35.27 4.11
432 678 8.971073 CAACCATTCTAATCTCAATAAAAGGGT 58.029 33.333 0.00 0.00 31.31 4.34
433 679 8.971073 ACAACCATTCTAATCTCAATAAAAGGG 58.029 33.333 0.00 0.00 0.00 3.95
441 687 9.959749 GTTTTTGTACAACCATTCTAATCTCAA 57.040 29.630 8.07 0.00 0.00 3.02
442 688 8.573035 GGTTTTTGTACAACCATTCTAATCTCA 58.427 33.333 8.07 0.00 43.00 3.27
443 689 8.965986 GGTTTTTGTACAACCATTCTAATCTC 57.034 34.615 8.07 0.00 43.00 2.75
483 729 5.999663 CGTTGACGAGCATGGTACACATAC 62.000 50.000 0.00 0.26 42.10 2.39
484 730 3.977051 CGTTGACGAGCATGGTACACATA 60.977 47.826 0.00 0.00 42.10 2.29
485 731 3.243572 CGTTGACGAGCATGGTACACAT 61.244 50.000 0.00 0.00 42.10 3.21
486 732 1.933052 CGTTGACGAGCATGGTACACA 60.933 52.381 0.00 0.00 42.10 3.72
487 733 0.713883 CGTTGACGAGCATGGTACAC 59.286 55.000 0.00 0.00 42.10 2.90
488 734 0.315886 ACGTTGACGAGCATGGTACA 59.684 50.000 10.87 0.00 43.28 2.90
489 735 1.916000 GTACGTTGACGAGCATGGTAC 59.084 52.381 10.87 0.00 43.02 3.34
490 736 1.814394 AGTACGTTGACGAGCATGGTA 59.186 47.619 10.87 0.00 43.02 3.25
491 737 0.601558 AGTACGTTGACGAGCATGGT 59.398 50.000 10.87 0.00 43.02 3.55
492 738 2.159421 AGTAGTACGTTGACGAGCATGG 60.159 50.000 10.87 0.00 43.02 3.66
493 739 2.846550 CAGTAGTACGTTGACGAGCATG 59.153 50.000 10.87 0.00 43.02 4.06
494 740 2.159421 CCAGTAGTACGTTGACGAGCAT 60.159 50.000 10.87 0.00 43.02 3.79
495 741 1.198408 CCAGTAGTACGTTGACGAGCA 59.802 52.381 10.87 0.00 43.02 4.26
496 742 1.198637 ACCAGTAGTACGTTGACGAGC 59.801 52.381 10.87 2.63 43.02 5.03
497 743 4.330894 TCATACCAGTAGTACGTTGACGAG 59.669 45.833 10.87 0.00 43.39 4.18
498 744 4.252878 TCATACCAGTAGTACGTTGACGA 58.747 43.478 10.87 0.00 43.39 4.20
499 745 4.604843 TCATACCAGTAGTACGTTGACG 57.395 45.455 0.00 1.41 46.33 4.35
500 746 7.758528 AGAAATTCATACCAGTAGTACGTTGAC 59.241 37.037 0.00 0.00 32.46 3.18
501 747 7.758076 CAGAAATTCATACCAGTAGTACGTTGA 59.242 37.037 0.00 0.00 32.46 3.18
502 748 7.464178 GCAGAAATTCATACCAGTAGTACGTTG 60.464 40.741 0.00 0.00 32.46 4.10
503 749 6.534079 GCAGAAATTCATACCAGTAGTACGTT 59.466 38.462 0.00 0.00 32.46 3.99
504 750 6.040878 GCAGAAATTCATACCAGTAGTACGT 58.959 40.000 0.00 0.00 32.46 3.57
505 751 6.273825 AGCAGAAATTCATACCAGTAGTACG 58.726 40.000 0.00 0.00 32.46 3.67
506 752 8.630917 TCTAGCAGAAATTCATACCAGTAGTAC 58.369 37.037 0.00 0.00 32.46 2.73
507 753 8.630917 GTCTAGCAGAAATTCATACCAGTAGTA 58.369 37.037 0.00 0.00 34.76 1.82
508 754 7.418025 GGTCTAGCAGAAATTCATACCAGTAGT 60.418 40.741 0.00 0.00 0.00 2.73
509 755 6.926272 GGTCTAGCAGAAATTCATACCAGTAG 59.074 42.308 0.00 0.00 0.00 2.57
510 756 6.611642 AGGTCTAGCAGAAATTCATACCAGTA 59.388 38.462 0.00 0.00 0.00 2.74
511 757 5.426833 AGGTCTAGCAGAAATTCATACCAGT 59.573 40.000 0.00 0.00 0.00 4.00
512 758 5.923204 AGGTCTAGCAGAAATTCATACCAG 58.077 41.667 0.00 0.00 0.00 4.00
513 759 5.425217 TGAGGTCTAGCAGAAATTCATACCA 59.575 40.000 0.00 0.00 0.00 3.25
514 760 5.918608 TGAGGTCTAGCAGAAATTCATACC 58.081 41.667 0.00 0.00 0.00 2.73
515 761 6.364706 CGATGAGGTCTAGCAGAAATTCATAC 59.635 42.308 0.00 0.00 0.00 2.39
516 762 6.040955 ACGATGAGGTCTAGCAGAAATTCATA 59.959 38.462 0.00 0.00 0.00 2.15
517 763 5.163364 ACGATGAGGTCTAGCAGAAATTCAT 60.163 40.000 0.00 0.00 0.00 2.57
518 764 4.160439 ACGATGAGGTCTAGCAGAAATTCA 59.840 41.667 0.00 0.00 0.00 2.57
519 765 4.505922 CACGATGAGGTCTAGCAGAAATTC 59.494 45.833 0.00 0.00 0.00 2.17
520 766 4.437239 CACGATGAGGTCTAGCAGAAATT 58.563 43.478 0.00 0.00 0.00 1.82
521 767 3.181471 CCACGATGAGGTCTAGCAGAAAT 60.181 47.826 0.00 0.00 0.00 2.17
522 768 2.166459 CCACGATGAGGTCTAGCAGAAA 59.834 50.000 0.00 0.00 0.00 2.52
523 769 1.751351 CCACGATGAGGTCTAGCAGAA 59.249 52.381 0.00 0.00 0.00 3.02
524 770 1.393603 CCACGATGAGGTCTAGCAGA 58.606 55.000 0.00 0.00 0.00 4.26
525 771 0.387202 CCCACGATGAGGTCTAGCAG 59.613 60.000 0.00 0.00 0.00 4.24
526 772 1.676678 GCCCACGATGAGGTCTAGCA 61.677 60.000 0.00 0.00 0.00 3.49
527 773 1.068250 GCCCACGATGAGGTCTAGC 59.932 63.158 0.00 0.00 0.00 3.42
528 774 0.757188 AGGCCCACGATGAGGTCTAG 60.757 60.000 0.00 0.00 35.95 2.43
529 775 0.755698 GAGGCCCACGATGAGGTCTA 60.756 60.000 0.00 0.00 38.52 2.59
530 776 2.039624 AGGCCCACGATGAGGTCT 59.960 61.111 0.00 0.00 31.62 3.85
531 777 2.060980 AGAGGCCCACGATGAGGTC 61.061 63.158 0.00 0.00 0.00 3.85
532 778 2.039624 AGAGGCCCACGATGAGGT 59.960 61.111 0.00 0.00 0.00 3.85
533 779 2.362369 ACAGAGGCCCACGATGAGG 61.362 63.158 0.00 0.00 0.00 3.86
534 780 1.153489 CACAGAGGCCCACGATGAG 60.153 63.158 0.00 0.00 0.00 2.90
535 781 1.888436 GACACAGAGGCCCACGATGA 61.888 60.000 0.00 0.00 0.00 2.92
536 782 1.448540 GACACAGAGGCCCACGATG 60.449 63.158 0.00 0.88 0.00 3.84
537 783 2.982130 GACACAGAGGCCCACGAT 59.018 61.111 0.00 0.00 0.00 3.73
538 784 3.680786 CGACACAGAGGCCCACGA 61.681 66.667 0.00 0.00 0.00 4.35
539 785 3.991051 ACGACACAGAGGCCCACG 61.991 66.667 0.00 0.00 0.00 4.94
540 786 2.357517 CACGACACAGAGGCCCAC 60.358 66.667 0.00 0.00 0.00 4.61
541 787 3.625897 CCACGACACAGAGGCCCA 61.626 66.667 0.00 0.00 0.00 5.36
545 791 4.742201 CCGGCCACGACACAGAGG 62.742 72.222 2.24 0.00 44.60 3.69
546 792 4.742201 CCCGGCCACGACACAGAG 62.742 72.222 2.24 0.00 44.60 3.35
553 799 4.652131 AATTGTGCCCGGCCACGA 62.652 61.111 8.15 8.15 44.60 4.35
554 800 4.114997 GAATTGTGCCCGGCCACG 62.115 66.667 11.45 0.00 38.55 4.94
555 801 4.114997 CGAATTGTGCCCGGCCAC 62.115 66.667 9.01 9.01 36.28 5.01
556 802 3.851897 TTCGAATTGTGCCCGGCCA 62.852 57.895 7.03 1.35 0.00 5.36
557 803 2.414785 ATTCGAATTGTGCCCGGCC 61.415 57.895 7.03 0.00 0.00 6.13
558 804 1.226660 CATTCGAATTGTGCCCGGC 60.227 57.895 8.21 1.04 0.00 6.13
559 805 0.525761 AACATTCGAATTGTGCCCGG 59.474 50.000 8.21 0.00 0.00 5.73
560 806 1.068610 ACAACATTCGAATTGTGCCCG 60.069 47.619 14.65 2.62 37.64 6.13
561 807 2.723124 ACAACATTCGAATTGTGCCC 57.277 45.000 14.65 0.00 37.64 5.36
562 808 4.403453 GTCTACAACATTCGAATTGTGCC 58.597 43.478 21.68 9.52 39.36 5.01
563 809 4.081761 CGTCTACAACATTCGAATTGTGC 58.918 43.478 21.68 13.07 39.36 4.57
564 810 4.387559 TCCGTCTACAACATTCGAATTGTG 59.612 41.667 21.68 17.74 39.36 3.33
565 811 4.387862 GTCCGTCTACAACATTCGAATTGT 59.612 41.667 18.29 18.29 41.77 2.71
566 812 4.625742 AGTCCGTCTACAACATTCGAATTG 59.374 41.667 8.21 8.93 0.00 2.32
567 813 4.817517 AGTCCGTCTACAACATTCGAATT 58.182 39.130 8.21 0.00 0.00 2.17
568 814 4.451629 AGTCCGTCTACAACATTCGAAT 57.548 40.909 4.39 4.39 0.00 3.34
569 815 3.928727 AGTCCGTCTACAACATTCGAA 57.071 42.857 0.00 0.00 0.00 3.71
570 816 3.005050 ACAAGTCCGTCTACAACATTCGA 59.995 43.478 0.00 0.00 0.00 3.71
571 817 3.314553 ACAAGTCCGTCTACAACATTCG 58.685 45.455 0.00 0.00 0.00 3.34
572 818 5.467705 ACTACAAGTCCGTCTACAACATTC 58.532 41.667 0.00 0.00 0.00 2.67
573 819 5.464030 ACTACAAGTCCGTCTACAACATT 57.536 39.130 0.00 0.00 0.00 2.71
574 820 5.942236 TCTACTACAAGTCCGTCTACAACAT 59.058 40.000 0.00 0.00 0.00 2.71
575 821 5.308014 TCTACTACAAGTCCGTCTACAACA 58.692 41.667 0.00 0.00 0.00 3.33
576 822 5.869753 TCTACTACAAGTCCGTCTACAAC 57.130 43.478 0.00 0.00 0.00 3.32
577 823 5.106396 GCTTCTACTACAAGTCCGTCTACAA 60.106 44.000 0.00 0.00 0.00 2.41
578 824 4.394300 GCTTCTACTACAAGTCCGTCTACA 59.606 45.833 0.00 0.00 0.00 2.74
579 825 4.394300 TGCTTCTACTACAAGTCCGTCTAC 59.606 45.833 0.00 0.00 0.00 2.59
580 826 4.582869 TGCTTCTACTACAAGTCCGTCTA 58.417 43.478 0.00 0.00 0.00 2.59
581 827 3.418995 TGCTTCTACTACAAGTCCGTCT 58.581 45.455 0.00 0.00 0.00 4.18
582 828 3.844577 TGCTTCTACTACAAGTCCGTC 57.155 47.619 0.00 0.00 0.00 4.79
583 829 4.595762 TTTGCTTCTACTACAAGTCCGT 57.404 40.909 0.00 0.00 0.00 4.69
584 830 5.408604 ACAATTTGCTTCTACTACAAGTCCG 59.591 40.000 0.00 0.00 0.00 4.79
585 831 6.803154 ACAATTTGCTTCTACTACAAGTCC 57.197 37.500 0.00 0.00 0.00 3.85
586 832 9.760660 CATAACAATTTGCTTCTACTACAAGTC 57.239 33.333 0.00 0.00 0.00 3.01
587 833 8.730680 CCATAACAATTTGCTTCTACTACAAGT 58.269 33.333 0.00 0.00 0.00 3.16
588 834 8.946085 TCCATAACAATTTGCTTCTACTACAAG 58.054 33.333 0.00 0.00 0.00 3.16
589 835 8.726988 GTCCATAACAATTTGCTTCTACTACAA 58.273 33.333 0.00 0.00 0.00 2.41
590 836 7.880713 TGTCCATAACAATTTGCTTCTACTACA 59.119 33.333 0.00 0.00 34.03 2.74
591 837 8.175716 GTGTCCATAACAATTTGCTTCTACTAC 58.824 37.037 0.00 0.00 40.31 2.73
592 838 7.335924 GGTGTCCATAACAATTTGCTTCTACTA 59.664 37.037 0.00 0.00 40.31 1.82
593 839 6.151144 GGTGTCCATAACAATTTGCTTCTACT 59.849 38.462 0.00 0.00 40.31 2.57
594 840 6.151144 AGGTGTCCATAACAATTTGCTTCTAC 59.849 38.462 0.00 0.00 40.31 2.59
595 841 6.245408 AGGTGTCCATAACAATTTGCTTCTA 58.755 36.000 0.00 0.00 40.31 2.10
596 842 5.079643 AGGTGTCCATAACAATTTGCTTCT 58.920 37.500 0.00 0.00 40.31 2.85
597 843 5.391312 AGGTGTCCATAACAATTTGCTTC 57.609 39.130 0.00 0.00 40.31 3.86
598 844 5.279456 GGAAGGTGTCCATAACAATTTGCTT 60.279 40.000 0.00 0.00 46.97 3.91
599 845 4.220602 GGAAGGTGTCCATAACAATTTGCT 59.779 41.667 0.00 0.00 46.97 3.91
600 846 4.494484 GGAAGGTGTCCATAACAATTTGC 58.506 43.478 0.00 0.00 46.97 3.68
619 865 9.958180 ATTTTCTTTCTTTTCTTTTTGAGGGAA 57.042 25.926 0.00 0.00 0.00 3.97
620 866 9.958180 AATTTTCTTTCTTTTCTTTTTGAGGGA 57.042 25.926 0.00 0.00 0.00 4.20
621 867 9.992910 CAATTTTCTTTCTTTTCTTTTTGAGGG 57.007 29.630 0.00 0.00 0.00 4.30
628 874 9.276590 CCCATAGCAATTTTCTTTCTTTTCTTT 57.723 29.630 0.00 0.00 0.00 2.52
629 875 7.388776 GCCCATAGCAATTTTCTTTCTTTTCTT 59.611 33.333 0.00 0.00 42.97 2.52
630 876 6.875726 GCCCATAGCAATTTTCTTTCTTTTCT 59.124 34.615 0.00 0.00 42.97 2.52
631 877 6.183360 CGCCCATAGCAATTTTCTTTCTTTTC 60.183 38.462 0.00 0.00 44.04 2.29
632 878 5.639082 CGCCCATAGCAATTTTCTTTCTTTT 59.361 36.000 0.00 0.00 44.04 2.27
633 879 5.170748 CGCCCATAGCAATTTTCTTTCTTT 58.829 37.500 0.00 0.00 44.04 2.52
634 880 4.220602 ACGCCCATAGCAATTTTCTTTCTT 59.779 37.500 0.00 0.00 44.04 2.52
635 881 3.763897 ACGCCCATAGCAATTTTCTTTCT 59.236 39.130 0.00 0.00 44.04 2.52
636 882 4.105486 GACGCCCATAGCAATTTTCTTTC 58.895 43.478 0.00 0.00 44.04 2.62
637 883 3.427503 CGACGCCCATAGCAATTTTCTTT 60.428 43.478 0.00 0.00 44.04 2.52
638 884 2.097466 CGACGCCCATAGCAATTTTCTT 59.903 45.455 0.00 0.00 44.04 2.52
639 885 1.670811 CGACGCCCATAGCAATTTTCT 59.329 47.619 0.00 0.00 44.04 2.52
640 886 1.400494 ACGACGCCCATAGCAATTTTC 59.600 47.619 0.00 0.00 44.04 2.29
641 887 1.132262 CACGACGCCCATAGCAATTTT 59.868 47.619 0.00 0.00 44.04 1.82
642 888 0.732571 CACGACGCCCATAGCAATTT 59.267 50.000 0.00 0.00 44.04 1.82
643 889 1.714899 GCACGACGCCCATAGCAATT 61.715 55.000 0.00 0.00 44.04 2.32
644 890 2.180204 GCACGACGCCCATAGCAAT 61.180 57.895 0.00 0.00 44.04 3.56
645 891 2.817834 GCACGACGCCCATAGCAA 60.818 61.111 0.00 0.00 44.04 3.91
646 892 3.384275 ATGCACGACGCCCATAGCA 62.384 57.895 0.00 0.00 44.04 3.49
647 893 2.588877 ATGCACGACGCCCATAGC 60.589 61.111 0.00 0.00 41.33 2.97
648 894 1.956170 GGATGCACGACGCCCATAG 60.956 63.158 0.00 0.00 41.33 2.23
649 895 2.108157 GGATGCACGACGCCCATA 59.892 61.111 0.00 0.00 41.33 2.74
928 1223 1.105167 ACCTGTCTTGACGGTGTCGA 61.105 55.000 13.43 0.00 40.11 4.20
931 1226 0.674534 GAGACCTGTCTTGACGGTGT 59.325 55.000 17.15 14.39 40.61 4.16
932 1227 0.038159 GGAGACCTGTCTTGACGGTG 60.038 60.000 17.15 8.49 40.61 4.94
933 1228 2.352817 GGAGACCTGTCTTGACGGT 58.647 57.895 13.86 13.86 40.61 4.83
2605 2949 1.062810 GGGTAGACTCTGATCCTGGGT 60.063 57.143 0.00 0.00 0.00 4.51
2689 3034 3.186119 CGTTGATTTCAGGAGAGAGAGC 58.814 50.000 0.00 0.00 0.00 4.09
2999 3400 0.673985 GGAGGTTTGTTGTTGGAGGC 59.326 55.000 0.00 0.00 0.00 4.70
3000 3401 1.681264 GTGGAGGTTTGTTGTTGGAGG 59.319 52.381 0.00 0.00 0.00 4.30
3001 3402 2.374184 TGTGGAGGTTTGTTGTTGGAG 58.626 47.619 0.00 0.00 0.00 3.86
3002 3403 2.516227 TGTGGAGGTTTGTTGTTGGA 57.484 45.000 0.00 0.00 0.00 3.53
3003 3404 2.958355 AGATGTGGAGGTTTGTTGTTGG 59.042 45.455 0.00 0.00 0.00 3.77
3004 3405 3.968649 CAGATGTGGAGGTTTGTTGTTG 58.031 45.455 0.00 0.00 0.00 3.33
3018 3419 2.009774 CCTACTTTTCCGCCAGATGTG 58.990 52.381 0.00 0.00 0.00 3.21
3019 3420 1.906574 TCCTACTTTTCCGCCAGATGT 59.093 47.619 0.00 0.00 0.00 3.06
3020 3421 2.691409 TCCTACTTTTCCGCCAGATG 57.309 50.000 0.00 0.00 0.00 2.90
3021 3422 2.224066 CGATCCTACTTTTCCGCCAGAT 60.224 50.000 0.00 0.00 0.00 2.90
3022 3423 1.136305 CGATCCTACTTTTCCGCCAGA 59.864 52.381 0.00 0.00 0.00 3.86
3023 3424 1.571919 CGATCCTACTTTTCCGCCAG 58.428 55.000 0.00 0.00 0.00 4.85
3024 3425 0.461339 GCGATCCTACTTTTCCGCCA 60.461 55.000 0.00 0.00 37.09 5.69
3025 3426 0.179081 AGCGATCCTACTTTTCCGCC 60.179 55.000 0.00 0.00 43.11 6.13
3026 3427 1.209998 GAGCGATCCTACTTTTCCGC 58.790 55.000 0.00 0.00 42.52 5.54
3027 3428 1.136305 TGGAGCGATCCTACTTTTCCG 59.864 52.381 22.18 0.00 0.00 4.30
3028 3429 2.431057 TCTGGAGCGATCCTACTTTTCC 59.569 50.000 22.18 0.00 0.00 3.13
3029 3430 3.449632 GTCTGGAGCGATCCTACTTTTC 58.550 50.000 22.18 0.94 0.00 2.29
3030 3431 2.159226 CGTCTGGAGCGATCCTACTTTT 60.159 50.000 22.18 0.00 0.00 2.27
3031 3432 1.405821 CGTCTGGAGCGATCCTACTTT 59.594 52.381 22.18 0.00 0.00 2.66
3032 3433 1.025812 CGTCTGGAGCGATCCTACTT 58.974 55.000 22.18 0.00 0.00 2.24
3033 3434 0.180642 TCGTCTGGAGCGATCCTACT 59.819 55.000 22.18 0.00 33.09 2.57
3034 3435 1.240256 ATCGTCTGGAGCGATCCTAC 58.760 55.000 22.18 17.25 44.54 3.18
3035 3436 3.727738 ATCGTCTGGAGCGATCCTA 57.272 52.632 22.18 6.23 44.54 2.94
3036 3437 4.589046 ATCGTCTGGAGCGATCCT 57.411 55.556 22.18 0.00 44.54 3.24
3040 3441 1.667154 CCCTTGATCGTCTGGAGCGA 61.667 60.000 0.00 0.00 42.75 4.93
3041 3442 1.227089 CCCTTGATCGTCTGGAGCG 60.227 63.158 0.00 0.00 32.36 5.03
3042 3443 0.537188 TTCCCTTGATCGTCTGGAGC 59.463 55.000 0.00 0.00 0.00 4.70
3043 3444 1.472376 GCTTCCCTTGATCGTCTGGAG 60.472 57.143 0.00 0.00 0.00 3.86
3044 3445 0.537188 GCTTCCCTTGATCGTCTGGA 59.463 55.000 0.00 0.00 0.00 3.86
3045 3446 0.807667 CGCTTCCCTTGATCGTCTGG 60.808 60.000 0.00 0.00 0.00 3.86
3046 3447 0.173481 TCGCTTCCCTTGATCGTCTG 59.827 55.000 0.00 0.00 0.00 3.51
3047 3448 0.173708 GTCGCTTCCCTTGATCGTCT 59.826 55.000 0.00 0.00 0.00 4.18
3048 3449 1.140407 CGTCGCTTCCCTTGATCGTC 61.140 60.000 0.00 0.00 0.00 4.20
3049 3450 1.153823 CGTCGCTTCCCTTGATCGT 60.154 57.895 0.00 0.00 0.00 3.73
3050 3451 0.867753 CTCGTCGCTTCCCTTGATCG 60.868 60.000 0.00 0.00 0.00 3.69
3051 3452 0.528684 CCTCGTCGCTTCCCTTGATC 60.529 60.000 0.00 0.00 0.00 2.92
3052 3453 1.517832 CCTCGTCGCTTCCCTTGAT 59.482 57.895 0.00 0.00 0.00 2.57
3053 3454 2.646175 CCCTCGTCGCTTCCCTTGA 61.646 63.158 0.00 0.00 0.00 3.02
3054 3455 2.125512 CCCTCGTCGCTTCCCTTG 60.126 66.667 0.00 0.00 0.00 3.61
3055 3456 2.168666 GAACCCTCGTCGCTTCCCTT 62.169 60.000 0.00 0.00 0.00 3.95
3056 3457 2.603776 AACCCTCGTCGCTTCCCT 60.604 61.111 0.00 0.00 0.00 4.20
3057 3458 2.125633 GAACCCTCGTCGCTTCCC 60.126 66.667 0.00 0.00 0.00 3.97
3058 3459 2.125633 GGAACCCTCGTCGCTTCC 60.126 66.667 0.00 0.00 0.00 3.46
3102 3503 1.130938 GTCGACGAAGAGAGAGGGAAC 59.869 57.143 0.00 0.00 0.00 3.62
3103 3504 1.451067 GTCGACGAAGAGAGAGGGAA 58.549 55.000 0.00 0.00 0.00 3.97
3104 3505 0.392729 GGTCGACGAAGAGAGAGGGA 60.393 60.000 9.92 0.00 0.00 4.20
3105 3506 2.099994 GGTCGACGAAGAGAGAGGG 58.900 63.158 9.92 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.