Multiple sequence alignment - TraesCS6A01G345100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G345100 chr6A 100.000 2525 0 0 1 2525 578953725 578956249 0.000000e+00 4663.0
1 TraesCS6A01G345100 chr6A 74.442 403 65 33 1139 1510 578942373 578942768 3.390000e-29 139.0
2 TraesCS6A01G345100 chr6D 89.946 1492 85 28 399 1849 432852107 432853574 0.000000e+00 1864.0
3 TraesCS6A01G345100 chr6D 84.929 491 22 16 1847 2302 432853619 432854092 1.380000e-122 449.0
4 TraesCS6A01G345100 chr6D 83.197 244 16 7 2300 2523 432854123 432854361 1.530000e-47 200.0
5 TraesCS6A01G345100 chr6D 73.621 417 70 32 1139 1523 432824017 432824425 9.480000e-25 124.0
6 TraesCS6A01G345100 chr6B 89.650 1401 84 22 399 1769 652983024 652984393 0.000000e+00 1727.0
7 TraesCS6A01G345100 chr6B 82.679 433 24 22 1847 2246 652984788 652985202 1.120000e-88 337.0
8 TraesCS6A01G345100 chr6B 84.416 231 13 4 2300 2516 652985356 652985577 3.290000e-49 206.0
9 TraesCS6A01G345100 chr6B 73.913 414 74 30 1139 1523 652945494 652945902 4.380000e-28 135.0
10 TraesCS6A01G345100 chr6B 92.727 55 4 0 2246 2300 652985265 652985319 2.080000e-11 80.5
11 TraesCS6A01G345100 chr4D 87.697 317 36 2 80 396 469305772 469305459 1.430000e-97 366.0
12 TraesCS6A01G345100 chrUn 85.804 317 42 3 80 396 306175614 306175927 1.450000e-87 333.0
13 TraesCS6A01G345100 chrUn 85.804 317 42 3 80 396 345479711 345480024 1.450000e-87 333.0
14 TraesCS6A01G345100 chr7A 84.735 321 42 6 80 397 98021583 98021899 5.240000e-82 315.0
15 TraesCS6A01G345100 chr7A 78.065 310 57 10 91 396 75395304 75395606 4.290000e-43 185.0
16 TraesCS6A01G345100 chr3A 87.200 250 24 5 148 396 620605192 620605434 6.880000e-71 278.0
17 TraesCS6A01G345100 chr7D 77.812 320 61 10 81 396 36522633 36522946 3.320000e-44 189.0
18 TraesCS6A01G345100 chr2A 77.640 322 62 9 80 396 179966738 179966422 1.190000e-43 187.0
19 TraesCS6A01G345100 chr3B 77.329 322 62 10 80 396 70117353 70117038 2.000000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G345100 chr6A 578953725 578956249 2524 False 4663.000000 4663 100.000 1 2525 1 chr6A.!!$F2 2524
1 TraesCS6A01G345100 chr6D 432852107 432854361 2254 False 837.666667 1864 86.024 399 2523 3 chr6D.!!$F2 2124
2 TraesCS6A01G345100 chr6B 652983024 652985577 2553 False 587.625000 1727 87.368 399 2516 4 chr6B.!!$F2 2117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.179037 ATGCATAGCCACAGCGTGAT 60.179 50.0 0.0 2.18 46.67 3.06 F
169 170 0.254747 TGTTTGGATAGGGAAGCGGG 59.745 55.0 0.0 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1331 0.252742 TCCCCCAGAAGAGGTTCTCC 60.253 60.000 0.0 0.0 41.4 3.71 R
2094 2537 1.305633 TGGACCTGGGAGAGCAGAG 60.306 63.158 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.915575 GGCAGCCAATCTGACCTG 58.084 61.111 6.55 0.00 45.36 4.00
19 20 1.001641 GGCAGCCAATCTGACCTGT 60.002 57.895 6.55 0.00 45.36 4.00
20 21 0.253044 GGCAGCCAATCTGACCTGTA 59.747 55.000 6.55 0.00 45.36 2.74
21 22 1.340017 GGCAGCCAATCTGACCTGTAA 60.340 52.381 6.55 0.00 45.36 2.41
22 23 2.436417 GCAGCCAATCTGACCTGTAAA 58.564 47.619 0.00 0.00 45.72 2.01
23 24 2.421424 GCAGCCAATCTGACCTGTAAAG 59.579 50.000 0.00 0.00 45.72 1.85
24 25 3.869912 GCAGCCAATCTGACCTGTAAAGA 60.870 47.826 0.00 0.00 45.72 2.52
25 26 3.937706 CAGCCAATCTGACCTGTAAAGAG 59.062 47.826 0.00 0.00 45.72 2.85
26 27 2.680339 GCCAATCTGACCTGTAAAGAGC 59.320 50.000 0.00 0.00 0.00 4.09
27 28 2.932614 CCAATCTGACCTGTAAAGAGCG 59.067 50.000 0.00 0.00 0.00 5.03
28 29 2.301577 ATCTGACCTGTAAAGAGCGC 57.698 50.000 0.00 0.00 0.00 5.92
29 30 0.246635 TCTGACCTGTAAAGAGCGCC 59.753 55.000 2.29 0.00 0.00 6.53
30 31 0.247736 CTGACCTGTAAAGAGCGCCT 59.752 55.000 2.29 0.00 0.00 5.52
31 32 0.685097 TGACCTGTAAAGAGCGCCTT 59.315 50.000 2.29 4.27 36.47 4.35
32 33 1.071699 TGACCTGTAAAGAGCGCCTTT 59.928 47.619 21.88 21.88 46.21 3.11
33 34 2.152016 GACCTGTAAAGAGCGCCTTTT 58.848 47.619 22.91 17.27 42.13 2.27
34 35 1.880027 ACCTGTAAAGAGCGCCTTTTG 59.120 47.619 22.91 15.28 42.13 2.44
35 36 1.200020 CCTGTAAAGAGCGCCTTTTGG 59.800 52.381 22.91 18.67 42.13 3.28
45 46 3.431725 CCTTTTGGCGGGCTCGAC 61.432 66.667 12.03 8.06 46.45 4.20
57 58 2.566529 CTCGACAGTGTGCCGCTA 59.433 61.111 0.00 0.00 0.00 4.26
58 59 1.801913 CTCGACAGTGTGCCGCTAC 60.802 63.158 0.00 0.00 0.00 3.58
59 60 2.049526 CGACAGTGTGCCGCTACA 60.050 61.111 0.00 0.00 0.00 2.74
60 61 1.446099 CGACAGTGTGCCGCTACAT 60.446 57.895 0.00 0.00 32.43 2.29
61 62 1.686566 CGACAGTGTGCCGCTACATG 61.687 60.000 0.00 0.00 32.43 3.21
62 63 1.361668 GACAGTGTGCCGCTACATGG 61.362 60.000 0.00 0.00 32.43 3.66
69 70 3.749981 CCGCTACATGGCATTCCC 58.250 61.111 0.00 0.00 0.00 3.97
70 71 1.149174 CCGCTACATGGCATTCCCT 59.851 57.895 0.00 0.00 0.00 4.20
71 72 1.168407 CCGCTACATGGCATTCCCTG 61.168 60.000 0.00 0.00 34.59 4.45
72 73 0.464373 CGCTACATGGCATTCCCTGT 60.464 55.000 0.00 0.00 42.66 4.00
73 74 1.767759 GCTACATGGCATTCCCTGTT 58.232 50.000 0.00 0.00 40.85 3.16
74 75 1.406539 GCTACATGGCATTCCCTGTTG 59.593 52.381 0.00 0.00 40.85 3.33
75 76 2.945440 GCTACATGGCATTCCCTGTTGA 60.945 50.000 0.00 0.00 40.85 3.18
76 77 1.549203 ACATGGCATTCCCTGTTGAC 58.451 50.000 0.00 0.00 37.88 3.18
77 78 1.076024 ACATGGCATTCCCTGTTGACT 59.924 47.619 0.00 0.00 37.88 3.41
78 79 1.475280 CATGGCATTCCCTGTTGACTG 59.525 52.381 0.00 0.00 0.00 3.51
79 80 0.251297 TGGCATTCCCTGTTGACTGG 60.251 55.000 0.46 0.46 35.06 4.00
85 86 4.007457 CCTGTTGACTGGGGCATG 57.993 61.111 0.00 0.00 0.00 4.06
86 87 1.679977 CCTGTTGACTGGGGCATGG 60.680 63.158 0.00 0.00 0.00 3.66
87 88 2.283101 TGTTGACTGGGGCATGGC 60.283 61.111 11.56 11.56 0.00 4.40
102 103 3.938048 GGCCAATGCATAGCCACA 58.062 55.556 27.58 0.00 46.34 4.17
103 104 1.737816 GGCCAATGCATAGCCACAG 59.262 57.895 27.58 3.63 46.34 3.66
104 105 1.066918 GCCAATGCATAGCCACAGC 59.933 57.895 0.00 0.00 37.47 4.40
105 106 1.357690 CCAATGCATAGCCACAGCG 59.642 57.895 0.00 0.00 46.67 5.18
106 107 1.378882 CCAATGCATAGCCACAGCGT 61.379 55.000 0.00 0.00 46.67 5.07
107 108 0.248336 CAATGCATAGCCACAGCGTG 60.248 55.000 0.00 2.27 46.67 5.34
108 109 0.392863 AATGCATAGCCACAGCGTGA 60.393 50.000 0.00 0.00 46.67 4.35
109 110 0.179037 ATGCATAGCCACAGCGTGAT 60.179 50.000 0.00 2.18 46.67 3.06
110 111 1.091197 TGCATAGCCACAGCGTGATG 61.091 55.000 9.75 7.17 46.67 3.07
111 112 1.645455 CATAGCCACAGCGTGATGC 59.355 57.895 9.75 6.17 46.67 3.91
124 125 3.600187 TGATGCCTCACATGCCATT 57.400 47.368 0.00 0.00 39.84 3.16
125 126 1.855295 TGATGCCTCACATGCCATTT 58.145 45.000 0.00 0.00 39.84 2.32
126 127 3.015675 TGATGCCTCACATGCCATTTA 57.984 42.857 0.00 0.00 39.84 1.40
127 128 2.953648 TGATGCCTCACATGCCATTTAG 59.046 45.455 0.00 0.00 39.84 1.85
128 129 1.766494 TGCCTCACATGCCATTTAGG 58.234 50.000 0.00 0.00 41.84 2.69
129 130 1.284491 TGCCTCACATGCCATTTAGGA 59.716 47.619 0.00 0.00 41.22 2.94
130 131 2.091720 TGCCTCACATGCCATTTAGGAT 60.092 45.455 0.00 0.00 41.22 3.24
131 132 2.961062 GCCTCACATGCCATTTAGGATT 59.039 45.455 0.00 0.00 41.22 3.01
132 133 3.243636 GCCTCACATGCCATTTAGGATTG 60.244 47.826 0.00 0.00 41.22 2.67
133 134 3.319972 CCTCACATGCCATTTAGGATTGG 59.680 47.826 0.00 0.00 41.22 3.16
134 135 4.209538 CTCACATGCCATTTAGGATTGGA 58.790 43.478 0.00 0.00 41.22 3.53
135 136 4.806892 TCACATGCCATTTAGGATTGGAT 58.193 39.130 0.00 0.00 41.22 3.41
136 137 5.951204 TCACATGCCATTTAGGATTGGATA 58.049 37.500 0.00 0.00 41.22 2.59
137 138 6.372104 TCACATGCCATTTAGGATTGGATAA 58.628 36.000 0.00 0.00 41.22 1.75
138 139 7.011994 TCACATGCCATTTAGGATTGGATAAT 58.988 34.615 0.00 0.00 41.22 1.28
139 140 8.169393 TCACATGCCATTTAGGATTGGATAATA 58.831 33.333 0.00 0.00 41.22 0.98
140 141 8.805175 CACATGCCATTTAGGATTGGATAATAA 58.195 33.333 0.00 0.00 41.22 1.40
141 142 9.378504 ACATGCCATTTAGGATTGGATAATAAA 57.621 29.630 0.00 0.00 41.22 1.40
167 168 7.687941 AAATATATGTTTGGATAGGGAAGCG 57.312 36.000 0.00 0.00 0.00 4.68
168 169 2.348411 ATGTTTGGATAGGGAAGCGG 57.652 50.000 0.00 0.00 0.00 5.52
169 170 0.254747 TGTTTGGATAGGGAAGCGGG 59.745 55.000 0.00 0.00 0.00 6.13
170 171 0.544697 GTTTGGATAGGGAAGCGGGA 59.455 55.000 0.00 0.00 0.00 5.14
171 172 1.143073 GTTTGGATAGGGAAGCGGGAT 59.857 52.381 0.00 0.00 0.00 3.85
172 173 1.056660 TTGGATAGGGAAGCGGGATC 58.943 55.000 0.00 0.00 0.00 3.36
173 174 0.836400 TGGATAGGGAAGCGGGATCC 60.836 60.000 1.92 1.92 37.23 3.36
174 175 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
175 176 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
176 177 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
177 178 0.264955 TAGGGAAGCGGGATCCTCTT 59.735 55.000 12.58 14.81 37.14 2.85
178 179 1.051556 AGGGAAGCGGGATCCTCTTC 61.052 60.000 25.83 25.83 37.14 2.87
179 180 1.338136 GGGAAGCGGGATCCTCTTCA 61.338 60.000 30.35 0.00 38.29 3.02
180 181 0.541863 GGAAGCGGGATCCTCTTCAA 59.458 55.000 30.35 0.00 38.29 2.69
181 182 1.474143 GGAAGCGGGATCCTCTTCAAG 60.474 57.143 30.35 11.91 38.29 3.02
182 183 1.482593 GAAGCGGGATCCTCTTCAAGA 59.517 52.381 27.44 0.00 36.96 3.02
183 184 1.118838 AGCGGGATCCTCTTCAAGAG 58.881 55.000 12.58 7.53 41.96 2.85
184 185 1.115467 GCGGGATCCTCTTCAAGAGA 58.885 55.000 16.64 2.59 45.07 3.10
185 186 1.202475 GCGGGATCCTCTTCAAGAGAC 60.202 57.143 16.64 6.81 45.07 3.36
186 187 1.066303 CGGGATCCTCTTCAAGAGACG 59.934 57.143 16.64 8.24 45.07 4.18
187 188 1.410882 GGGATCCTCTTCAAGAGACGG 59.589 57.143 16.64 0.00 45.07 4.79
188 189 1.410882 GGATCCTCTTCAAGAGACGGG 59.589 57.143 16.64 0.00 45.07 5.28
189 190 2.104170 GATCCTCTTCAAGAGACGGGT 58.896 52.381 16.64 0.00 45.07 5.28
190 191 1.257743 TCCTCTTCAAGAGACGGGTG 58.742 55.000 16.64 0.00 45.07 4.61
191 192 0.390472 CCTCTTCAAGAGACGGGTGC 60.390 60.000 16.64 0.00 45.07 5.01
192 193 0.605589 CTCTTCAAGAGACGGGTGCT 59.394 55.000 8.98 0.00 45.07 4.40
193 194 1.001406 CTCTTCAAGAGACGGGTGCTT 59.999 52.381 8.98 0.00 45.07 3.91
194 195 2.231478 CTCTTCAAGAGACGGGTGCTTA 59.769 50.000 8.98 0.00 45.07 3.09
195 196 2.231478 TCTTCAAGAGACGGGTGCTTAG 59.769 50.000 0.00 0.00 0.00 2.18
196 197 1.919240 TCAAGAGACGGGTGCTTAGA 58.081 50.000 0.00 0.00 0.00 2.10
197 198 1.819288 TCAAGAGACGGGTGCTTAGAG 59.181 52.381 0.00 0.00 0.00 2.43
198 199 1.819288 CAAGAGACGGGTGCTTAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
199 200 1.465794 AGAGACGGGTGCTTAGAGAC 58.534 55.000 0.00 0.00 0.00 3.36
200 201 1.174783 GAGACGGGTGCTTAGAGACA 58.825 55.000 0.00 0.00 0.00 3.41
201 202 1.544691 GAGACGGGTGCTTAGAGACAA 59.455 52.381 0.00 0.00 0.00 3.18
202 203 1.968493 AGACGGGTGCTTAGAGACAAA 59.032 47.619 0.00 0.00 0.00 2.83
203 204 2.367567 AGACGGGTGCTTAGAGACAAAA 59.632 45.455 0.00 0.00 0.00 2.44
204 205 3.135994 GACGGGTGCTTAGAGACAAAAA 58.864 45.455 0.00 0.00 0.00 1.94
205 206 3.139077 ACGGGTGCTTAGAGACAAAAAG 58.861 45.455 0.00 0.00 0.00 2.27
206 207 3.139077 CGGGTGCTTAGAGACAAAAAGT 58.861 45.455 0.00 0.00 0.00 2.66
207 208 3.058914 CGGGTGCTTAGAGACAAAAAGTG 60.059 47.826 0.00 0.00 0.00 3.16
208 209 3.883489 GGGTGCTTAGAGACAAAAAGTGT 59.117 43.478 0.00 0.00 45.74 3.55
209 210 4.338400 GGGTGCTTAGAGACAAAAAGTGTT 59.662 41.667 0.00 0.00 41.96 3.32
210 211 5.273944 GGTGCTTAGAGACAAAAAGTGTTG 58.726 41.667 0.00 0.00 41.96 3.33
211 212 5.163652 GGTGCTTAGAGACAAAAAGTGTTGT 60.164 40.000 0.00 0.00 44.38 3.32
219 220 4.974368 ACAAAAAGTGTTGTCCGATTCA 57.026 36.364 0.00 0.00 37.10 2.57
220 221 5.514274 ACAAAAAGTGTTGTCCGATTCAT 57.486 34.783 0.00 0.00 37.10 2.57
221 222 6.627395 ACAAAAAGTGTTGTCCGATTCATA 57.373 33.333 0.00 0.00 37.10 2.15
222 223 7.033530 ACAAAAAGTGTTGTCCGATTCATAA 57.966 32.000 0.00 0.00 37.10 1.90
223 224 7.484975 ACAAAAAGTGTTGTCCGATTCATAAA 58.515 30.769 0.00 0.00 37.10 1.40
224 225 7.647715 ACAAAAAGTGTTGTCCGATTCATAAAG 59.352 33.333 0.00 0.00 37.10 1.85
225 226 6.877611 AAAGTGTTGTCCGATTCATAAAGT 57.122 33.333 0.00 0.00 0.00 2.66
226 227 6.877611 AAGTGTTGTCCGATTCATAAAGTT 57.122 33.333 0.00 0.00 0.00 2.66
227 228 6.241207 AGTGTTGTCCGATTCATAAAGTTG 57.759 37.500 0.00 0.00 0.00 3.16
228 229 5.995282 AGTGTTGTCCGATTCATAAAGTTGA 59.005 36.000 0.00 0.00 0.00 3.18
229 230 6.485313 AGTGTTGTCCGATTCATAAAGTTGAA 59.515 34.615 0.00 0.00 39.77 2.69
230 231 7.012894 AGTGTTGTCCGATTCATAAAGTTGAAA 59.987 33.333 0.00 0.00 38.98 2.69
231 232 7.646130 GTGTTGTCCGATTCATAAAGTTGAAAA 59.354 33.333 0.00 0.00 38.98 2.29
232 233 8.191446 TGTTGTCCGATTCATAAAGTTGAAAAA 58.809 29.630 0.00 0.00 38.98 1.94
233 234 8.690840 GTTGTCCGATTCATAAAGTTGAAAAAG 58.309 33.333 0.00 0.00 38.98 2.27
234 235 7.936584 TGTCCGATTCATAAAGTTGAAAAAGT 58.063 30.769 0.00 0.00 38.98 2.66
235 236 8.410141 TGTCCGATTCATAAAGTTGAAAAAGTT 58.590 29.630 0.00 0.00 38.98 2.66
236 237 8.690840 GTCCGATTCATAAAGTTGAAAAAGTTG 58.309 33.333 0.00 0.00 38.98 3.16
237 238 8.625651 TCCGATTCATAAAGTTGAAAAAGTTGA 58.374 29.630 0.00 0.00 38.98 3.18
238 239 9.243637 CCGATTCATAAAGTTGAAAAAGTTGAA 57.756 29.630 0.00 0.00 38.98 2.69
243 244 9.323985 TCATAAAGTTGAAAAAGTTGAAATGGG 57.676 29.630 0.00 0.00 0.00 4.00
244 245 8.558700 CATAAAGTTGAAAAAGTTGAAATGGGG 58.441 33.333 0.00 0.00 0.00 4.96
245 246 5.948742 AGTTGAAAAAGTTGAAATGGGGA 57.051 34.783 0.00 0.00 0.00 4.81
246 247 5.917462 AGTTGAAAAAGTTGAAATGGGGAG 58.083 37.500 0.00 0.00 0.00 4.30
247 248 5.660864 AGTTGAAAAAGTTGAAATGGGGAGA 59.339 36.000 0.00 0.00 0.00 3.71
248 249 6.156083 AGTTGAAAAAGTTGAAATGGGGAGAA 59.844 34.615 0.00 0.00 0.00 2.87
249 250 6.160576 TGAAAAAGTTGAAATGGGGAGAAG 57.839 37.500 0.00 0.00 0.00 2.85
250 251 5.070313 TGAAAAAGTTGAAATGGGGAGAAGG 59.930 40.000 0.00 0.00 0.00 3.46
251 252 4.469469 AAAGTTGAAATGGGGAGAAGGA 57.531 40.909 0.00 0.00 0.00 3.36
252 253 4.469469 AAGTTGAAATGGGGAGAAGGAA 57.531 40.909 0.00 0.00 0.00 3.36
253 254 4.682021 AGTTGAAATGGGGAGAAGGAAT 57.318 40.909 0.00 0.00 0.00 3.01
254 255 4.347607 AGTTGAAATGGGGAGAAGGAATG 58.652 43.478 0.00 0.00 0.00 2.67
255 256 2.738743 TGAAATGGGGAGAAGGAATGC 58.261 47.619 0.00 0.00 0.00 3.56
256 257 2.042842 TGAAATGGGGAGAAGGAATGCA 59.957 45.455 0.00 0.00 0.00 3.96
257 258 3.303049 GAAATGGGGAGAAGGAATGCAT 58.697 45.455 0.00 0.00 0.00 3.96
258 259 2.376695 ATGGGGAGAAGGAATGCATG 57.623 50.000 0.00 0.00 0.00 4.06
259 260 1.002069 TGGGGAGAAGGAATGCATGT 58.998 50.000 0.00 0.00 0.00 3.21
260 261 1.341285 TGGGGAGAAGGAATGCATGTG 60.341 52.381 0.00 0.00 0.00 3.21
261 262 1.341383 GGGGAGAAGGAATGCATGTGT 60.341 52.381 0.00 0.00 0.00 3.72
262 263 2.092429 GGGGAGAAGGAATGCATGTGTA 60.092 50.000 0.00 0.00 0.00 2.90
263 264 3.209410 GGGAGAAGGAATGCATGTGTAG 58.791 50.000 0.00 0.00 0.00 2.74
264 265 3.370953 GGGAGAAGGAATGCATGTGTAGT 60.371 47.826 0.00 0.00 0.00 2.73
265 266 3.624861 GGAGAAGGAATGCATGTGTAGTG 59.375 47.826 0.00 0.00 0.00 2.74
266 267 4.507710 GAGAAGGAATGCATGTGTAGTGA 58.492 43.478 0.00 0.00 0.00 3.41
267 268 4.511527 AGAAGGAATGCATGTGTAGTGAG 58.488 43.478 0.00 0.00 0.00 3.51
268 269 4.223700 AGAAGGAATGCATGTGTAGTGAGA 59.776 41.667 0.00 0.00 0.00 3.27
269 270 4.134379 AGGAATGCATGTGTAGTGAGAG 57.866 45.455 0.00 0.00 0.00 3.20
270 271 3.517100 AGGAATGCATGTGTAGTGAGAGT 59.483 43.478 0.00 0.00 0.00 3.24
271 272 3.868077 GGAATGCATGTGTAGTGAGAGTC 59.132 47.826 0.00 0.00 0.00 3.36
272 273 2.636768 TGCATGTGTAGTGAGAGTCG 57.363 50.000 0.00 0.00 0.00 4.18
273 274 1.272781 GCATGTGTAGTGAGAGTCGC 58.727 55.000 0.00 0.00 0.00 5.19
274 275 1.135257 GCATGTGTAGTGAGAGTCGCT 60.135 52.381 0.00 0.00 40.76 4.93
275 276 2.672478 GCATGTGTAGTGAGAGTCGCTT 60.672 50.000 0.00 0.00 38.35 4.68
276 277 3.579709 CATGTGTAGTGAGAGTCGCTTT 58.420 45.455 0.00 0.00 38.35 3.51
277 278 3.728076 TGTGTAGTGAGAGTCGCTTTT 57.272 42.857 0.00 0.00 38.35 2.27
278 279 4.054780 TGTGTAGTGAGAGTCGCTTTTT 57.945 40.909 0.00 0.00 38.35 1.94
279 280 5.190992 TGTGTAGTGAGAGTCGCTTTTTA 57.809 39.130 0.00 0.00 38.35 1.52
280 281 5.779922 TGTGTAGTGAGAGTCGCTTTTTAT 58.220 37.500 0.00 0.00 38.35 1.40
281 282 6.220930 TGTGTAGTGAGAGTCGCTTTTTATT 58.779 36.000 0.00 0.00 38.35 1.40
282 283 6.365247 TGTGTAGTGAGAGTCGCTTTTTATTC 59.635 38.462 0.00 0.00 38.35 1.75
283 284 6.586844 GTGTAGTGAGAGTCGCTTTTTATTCT 59.413 38.462 0.00 0.00 38.35 2.40
284 285 7.116519 GTGTAGTGAGAGTCGCTTTTTATTCTT 59.883 37.037 0.00 0.00 38.35 2.52
285 286 7.656137 TGTAGTGAGAGTCGCTTTTTATTCTTT 59.344 33.333 0.00 0.00 38.35 2.52
286 287 6.892691 AGTGAGAGTCGCTTTTTATTCTTTG 58.107 36.000 0.00 0.00 32.48 2.77
287 288 6.706270 AGTGAGAGTCGCTTTTTATTCTTTGA 59.294 34.615 0.00 0.00 32.48 2.69
288 289 7.389053 AGTGAGAGTCGCTTTTTATTCTTTGAT 59.611 33.333 0.00 0.00 32.48 2.57
289 290 7.479916 GTGAGAGTCGCTTTTTATTCTTTGATG 59.520 37.037 0.00 0.00 0.00 3.07
290 291 7.387673 TGAGAGTCGCTTTTTATTCTTTGATGA 59.612 33.333 0.00 0.00 0.00 2.92
291 292 8.099364 AGAGTCGCTTTTTATTCTTTGATGAA 57.901 30.769 0.00 0.00 0.00 2.57
292 293 8.233190 AGAGTCGCTTTTTATTCTTTGATGAAG 58.767 33.333 0.00 0.00 36.67 3.02
293 294 7.875971 AGTCGCTTTTTATTCTTTGATGAAGT 58.124 30.769 0.00 0.00 36.70 3.01
294 295 8.017946 AGTCGCTTTTTATTCTTTGATGAAGTC 58.982 33.333 0.00 0.00 36.70 3.01
295 296 7.271438 GTCGCTTTTTATTCTTTGATGAAGTCC 59.729 37.037 0.00 0.00 36.70 3.85
296 297 7.040755 TCGCTTTTTATTCTTTGATGAAGTCCA 60.041 33.333 0.00 0.00 36.70 4.02
297 298 7.061094 CGCTTTTTATTCTTTGATGAAGTCCAC 59.939 37.037 0.00 0.00 36.70 4.02
298 299 8.084684 GCTTTTTATTCTTTGATGAAGTCCACT 58.915 33.333 0.00 0.00 36.70 4.00
301 302 9.793259 TTTTATTCTTTGATGAAGTCCACTAGT 57.207 29.630 0.00 0.00 36.70 2.57
304 305 7.540474 TTCTTTGATGAAGTCCACTAGTAGT 57.460 36.000 0.00 0.00 36.70 2.73
305 306 8.645814 TTCTTTGATGAAGTCCACTAGTAGTA 57.354 34.615 1.57 0.00 36.70 1.82
306 307 8.282455 TCTTTGATGAAGTCCACTAGTAGTAG 57.718 38.462 1.57 2.87 36.70 2.57
307 308 6.452494 TTGATGAAGTCCACTAGTAGTAGC 57.548 41.667 1.57 0.00 0.00 3.58
308 309 5.756918 TGATGAAGTCCACTAGTAGTAGCT 58.243 41.667 1.57 0.00 0.00 3.32
309 310 6.188407 TGATGAAGTCCACTAGTAGTAGCTT 58.812 40.000 1.57 7.56 0.00 3.74
310 311 5.899120 TGAAGTCCACTAGTAGTAGCTTG 57.101 43.478 1.57 0.00 0.00 4.01
311 312 4.158025 TGAAGTCCACTAGTAGTAGCTTGC 59.842 45.833 1.57 3.86 0.00 4.01
312 313 3.698289 AGTCCACTAGTAGTAGCTTGCA 58.302 45.455 1.57 0.00 0.00 4.08
313 314 3.444388 AGTCCACTAGTAGTAGCTTGCAC 59.556 47.826 1.57 0.00 0.00 4.57
314 315 3.444388 GTCCACTAGTAGTAGCTTGCACT 59.556 47.826 1.57 0.00 0.00 4.40
315 316 3.444034 TCCACTAGTAGTAGCTTGCACTG 59.556 47.826 1.57 0.00 0.00 3.66
316 317 3.444034 CCACTAGTAGTAGCTTGCACTGA 59.556 47.826 1.57 0.00 0.00 3.41
317 318 4.439426 CCACTAGTAGTAGCTTGCACTGAG 60.439 50.000 1.57 0.00 0.00 3.35
318 319 3.697045 ACTAGTAGTAGCTTGCACTGAGG 59.303 47.826 0.00 0.00 0.00 3.86
319 320 2.808919 AGTAGTAGCTTGCACTGAGGA 58.191 47.619 0.00 0.00 0.00 3.71
320 321 2.757868 AGTAGTAGCTTGCACTGAGGAG 59.242 50.000 0.00 0.00 0.00 3.69
321 322 1.930251 AGTAGCTTGCACTGAGGAGA 58.070 50.000 0.00 0.00 0.00 3.71
322 323 2.251818 AGTAGCTTGCACTGAGGAGAA 58.748 47.619 0.00 0.00 0.00 2.87
323 324 2.634940 AGTAGCTTGCACTGAGGAGAAA 59.365 45.455 0.00 0.00 0.00 2.52
324 325 2.645838 AGCTTGCACTGAGGAGAAAA 57.354 45.000 0.00 0.00 0.00 2.29
325 326 2.936202 AGCTTGCACTGAGGAGAAAAA 58.064 42.857 0.00 0.00 0.00 1.94
352 353 9.762933 AAATCAACACATGTGCTTTAAATTACT 57.237 25.926 25.68 0.00 0.00 2.24
353 354 9.762933 AATCAACACATGTGCTTTAAATTACTT 57.237 25.926 25.68 4.98 0.00 2.24
354 355 9.762933 ATCAACACATGTGCTTTAAATTACTTT 57.237 25.926 25.68 4.77 0.00 2.66
355 356 9.593134 TCAACACATGTGCTTTAAATTACTTTT 57.407 25.926 25.68 4.33 0.00 2.27
362 363 8.973835 TGTGCTTTAAATTACTTTTTATCCCG 57.026 30.769 0.00 0.00 0.00 5.14
363 364 8.794553 TGTGCTTTAAATTACTTTTTATCCCGA 58.205 29.630 0.00 0.00 0.00 5.14
364 365 9.285770 GTGCTTTAAATTACTTTTTATCCCGAG 57.714 33.333 0.00 0.00 0.00 4.63
365 366 9.233649 TGCTTTAAATTACTTTTTATCCCGAGA 57.766 29.630 0.00 0.00 0.00 4.04
366 367 9.499585 GCTTTAAATTACTTTTTATCCCGAGAC 57.500 33.333 0.00 0.00 0.00 3.36
371 372 8.438676 AATTACTTTTTATCCCGAGACATCTG 57.561 34.615 0.00 0.00 0.00 2.90
372 373 5.422214 ACTTTTTATCCCGAGACATCTGT 57.578 39.130 0.00 0.00 0.00 3.41
373 374 6.540438 ACTTTTTATCCCGAGACATCTGTA 57.460 37.500 0.00 0.00 0.00 2.74
374 375 7.125792 ACTTTTTATCCCGAGACATCTGTAT 57.874 36.000 0.00 0.00 0.00 2.29
375 376 7.565680 ACTTTTTATCCCGAGACATCTGTATT 58.434 34.615 0.00 0.00 0.00 1.89
376 377 7.711339 ACTTTTTATCCCGAGACATCTGTATTC 59.289 37.037 0.00 0.00 0.00 1.75
377 378 6.724893 TTTATCCCGAGACATCTGTATTCA 57.275 37.500 0.00 0.00 0.00 2.57
378 379 6.918067 TTATCCCGAGACATCTGTATTCAT 57.082 37.500 0.00 0.00 0.00 2.57
379 380 8.417273 TTTATCCCGAGACATCTGTATTCATA 57.583 34.615 0.00 0.00 0.00 2.15
380 381 8.595362 TTATCCCGAGACATCTGTATTCATAT 57.405 34.615 0.00 0.00 0.00 1.78
381 382 6.272822 TCCCGAGACATCTGTATTCATATG 57.727 41.667 0.00 0.00 35.29 1.78
382 383 4.867047 CCCGAGACATCTGTATTCATATGC 59.133 45.833 0.00 0.00 33.34 3.14
383 384 4.867047 CCGAGACATCTGTATTCATATGCC 59.133 45.833 0.00 0.00 33.34 4.40
384 385 5.473039 CGAGACATCTGTATTCATATGCCA 58.527 41.667 0.00 0.00 33.34 4.92
385 386 5.347093 CGAGACATCTGTATTCATATGCCAC 59.653 44.000 0.00 0.00 33.34 5.01
386 387 5.555017 AGACATCTGTATTCATATGCCACC 58.445 41.667 0.00 0.00 33.34 4.61
387 388 5.072193 AGACATCTGTATTCATATGCCACCA 59.928 40.000 0.00 0.00 33.34 4.17
388 389 5.884322 ACATCTGTATTCATATGCCACCAT 58.116 37.500 0.00 0.00 33.34 3.55
389 390 6.309357 ACATCTGTATTCATATGCCACCATT 58.691 36.000 0.00 0.00 33.34 3.16
390 391 6.208007 ACATCTGTATTCATATGCCACCATTG 59.792 38.462 0.00 0.00 33.34 2.82
391 392 5.693961 TCTGTATTCATATGCCACCATTGT 58.306 37.500 0.00 0.00 32.85 2.71
392 393 6.836242 TCTGTATTCATATGCCACCATTGTA 58.164 36.000 0.00 0.00 32.85 2.41
393 394 6.710295 TCTGTATTCATATGCCACCATTGTAC 59.290 38.462 0.00 0.00 32.85 2.90
394 395 6.360618 TGTATTCATATGCCACCATTGTACA 58.639 36.000 0.00 0.00 32.85 2.90
395 396 7.003482 TGTATTCATATGCCACCATTGTACAT 58.997 34.615 0.00 0.00 32.85 2.29
396 397 6.982160 ATTCATATGCCACCATTGTACATT 57.018 33.333 0.00 0.00 32.85 2.71
397 398 5.771153 TCATATGCCACCATTGTACATTG 57.229 39.130 10.21 10.21 32.85 2.82
402 403 2.739287 GCCACCATTGTACATTGCATGG 60.739 50.000 22.65 22.65 35.45 3.66
404 405 2.094130 CACCATTGTACATTGCATGGCA 60.094 45.455 19.78 0.00 36.47 4.92
431 432 4.851114 CACGATGCGCGCCTTTCG 62.851 66.667 32.44 32.44 46.04 3.46
500 501 0.811281 GATAAACACAGCTGGCCCAC 59.189 55.000 19.93 0.00 0.00 4.61
526 527 3.214328 CCATTTACCAGTGCCTACCATC 58.786 50.000 0.00 0.00 0.00 3.51
538 539 2.224402 GCCTACCATCATCCAGAGTTCC 60.224 54.545 0.00 0.00 0.00 3.62
539 540 3.312890 CCTACCATCATCCAGAGTTCCT 58.687 50.000 0.00 0.00 0.00 3.36
540 541 3.070734 CCTACCATCATCCAGAGTTCCTG 59.929 52.174 0.00 0.00 42.55 3.86
541 542 2.555664 ACCATCATCCAGAGTTCCTGT 58.444 47.619 0.00 0.00 41.33 4.00
542 543 2.238144 ACCATCATCCAGAGTTCCTGTG 59.762 50.000 0.00 0.00 41.33 3.66
544 545 3.136077 CCATCATCCAGAGTTCCTGTGAT 59.864 47.826 0.00 0.00 41.33 3.06
546 547 5.295950 CATCATCCAGAGTTCCTGTGATAC 58.704 45.833 0.00 0.00 41.33 2.24
548 549 4.403752 TCATCCAGAGTTCCTGTGATACAG 59.596 45.833 2.05 2.05 45.53 2.74
575 603 8.200792 AGAATTTGTGTAGATGCTCTAGTTAGG 58.799 37.037 0.00 0.00 28.01 2.69
584 612 7.719871 AGATGCTCTAGTTAGGAACTTAACA 57.280 36.000 8.94 0.00 42.81 2.41
591 619 5.464030 AGTTAGGAACTTAACAGAAGCGA 57.536 39.130 8.94 0.00 39.04 4.93
609 637 7.063426 CAGAAGCGAATGAACAGTTGAACTATA 59.937 37.037 0.00 0.00 0.00 1.31
610 638 7.766278 AGAAGCGAATGAACAGTTGAACTATAT 59.234 33.333 0.00 0.00 0.00 0.86
650 678 9.813446 ATGTTACTAATTAGTACTCGGAAAAGG 57.187 33.333 22.22 0.00 38.43 3.11
673 701 0.745845 GCCAAGGCACGTCTGATCAT 60.746 55.000 6.14 0.00 41.49 2.45
800 836 1.508088 GCCGCTGCTGCTAATTTGT 59.492 52.632 14.03 0.00 36.97 2.83
805 841 2.253603 GCTGCTGCTAATTTGTTTCCG 58.746 47.619 8.53 0.00 36.03 4.30
889 925 4.796231 CTCGCCTCCCCAACGACG 62.796 72.222 0.00 0.00 0.00 5.12
925 961 2.089980 CTGACAAGATTTCCTGCCCTG 58.910 52.381 0.00 0.00 0.00 4.45
977 1021 1.506718 CGTCCGTAAGCAGAGCAGA 59.493 57.895 0.00 0.00 0.00 4.26
978 1022 0.524392 CGTCCGTAAGCAGAGCAGAG 60.524 60.000 0.00 0.00 0.00 3.35
979 1023 0.804156 GTCCGTAAGCAGAGCAGAGC 60.804 60.000 0.00 0.00 0.00 4.09
1287 1349 1.275421 GGGAGAACCTCTTCTGGGGG 61.275 65.000 0.00 0.00 36.82 5.40
1526 1588 2.472909 GCATGCGCCCCTACTGAAC 61.473 63.158 4.18 0.00 0.00 3.18
1530 1592 2.267961 CGCCCCTACTGAACACCC 59.732 66.667 0.00 0.00 0.00 4.61
1534 1596 1.285280 CCCCTACTGAACACCCATGA 58.715 55.000 0.00 0.00 0.00 3.07
1536 1598 1.405526 CCCTACTGAACACCCATGACG 60.406 57.143 0.00 0.00 0.00 4.35
1537 1599 1.405526 CCTACTGAACACCCATGACGG 60.406 57.143 0.00 0.00 0.00 4.79
1538 1600 1.548719 CTACTGAACACCCATGACGGA 59.451 52.381 0.00 0.00 36.56 4.69
1596 1658 4.129737 TCTCGCCGGCCTTCTTCG 62.130 66.667 23.46 4.61 0.00 3.79
1652 1720 3.688330 CGGCGCGGCGTAGTAATG 61.688 66.667 41.95 16.01 0.00 1.90
1656 1724 1.538117 GCGCGGCGTAGTAATGTCTC 61.538 60.000 24.46 0.00 0.00 3.36
1677 1745 1.404583 GCTGTCCCATTCATTGTTGCC 60.405 52.381 0.00 0.00 0.00 4.52
1689 1757 1.522668 TTGTTGCCCATCGAGAGTTG 58.477 50.000 0.00 0.00 0.00 3.16
1777 1851 5.464389 GCTGCATTTTATTTATCCTTGCCAG 59.536 40.000 0.00 0.00 0.00 4.85
1779 1853 7.180322 TGCATTTTATTTATCCTTGCCAGAA 57.820 32.000 0.00 0.00 0.00 3.02
1780 1854 7.794041 TGCATTTTATTTATCCTTGCCAGAAT 58.206 30.769 0.00 0.00 0.00 2.40
1810 2152 3.607741 TCCTGTTGTGGTTACGAAACAA 58.392 40.909 0.00 0.00 37.34 2.83
1826 2168 7.873739 ACGAAACAAAATCTGAAATGAATCC 57.126 32.000 0.00 0.00 0.00 3.01
1835 2177 5.682234 TCTGAAATGAATCCTGAGCTACA 57.318 39.130 0.00 0.00 0.00 2.74
1853 2246 6.749139 AGCTACATATTTGACTGCTCGATTA 58.251 36.000 0.00 0.00 0.00 1.75
1859 2252 7.815068 ACATATTTGACTGCTCGATTATACTCC 59.185 37.037 0.00 0.00 0.00 3.85
1860 2253 4.585955 TTGACTGCTCGATTATACTCCC 57.414 45.455 0.00 0.00 0.00 4.30
1881 2274 3.609373 CCATGCTTGTAAAAATGACAGCG 59.391 43.478 0.00 0.00 0.00 5.18
1914 2319 6.616774 AAAAGAAGAAGAAGAAGACAGCAG 57.383 37.500 0.00 0.00 0.00 4.24
1966 2371 3.390003 AAAGTCCACTTTTCGGCGA 57.610 47.368 4.99 4.99 43.07 5.54
1981 2386 2.407428 GCGAGGCTTTTAGGTGGCC 61.407 63.158 0.00 0.00 45.57 5.36
2045 2459 1.280886 GAGCATGCATAGTCGAGGCG 61.281 60.000 21.98 0.00 37.80 5.52
2076 2519 2.743928 GCCACCTTGCGACAGAGG 60.744 66.667 0.00 0.00 39.02 3.69
2094 2537 4.486503 CTGGGCCTCCTGCTCTGC 62.487 72.222 4.53 0.00 42.79 4.26
2096 2539 4.173924 GGGCCTCCTGCTCTGCTC 62.174 72.222 0.84 0.00 37.53 4.26
2097 2540 3.082701 GGCCTCCTGCTCTGCTCT 61.083 66.667 0.00 0.00 40.92 4.09
2098 2541 2.187424 GCCTCCTGCTCTGCTCTG 59.813 66.667 0.00 0.00 36.87 3.35
2314 2860 3.138798 GGCCGTCGAGTAGGAGCA 61.139 66.667 5.77 0.00 0.00 4.26
2337 2883 1.521681 GCTGGTGGCGGAGTATCAC 60.522 63.158 0.00 0.00 36.25 3.06
2339 2885 0.460284 CTGGTGGCGGAGTATCACAC 60.460 60.000 0.00 0.00 36.25 3.82
2352 2898 0.670546 ATCACACGCGGGTCAAAGAG 60.671 55.000 13.25 0.00 0.00 2.85
2357 2903 1.292223 CGCGGGTCAAAGAGGAAGA 59.708 57.895 0.00 0.00 0.00 2.87
2358 2904 0.320421 CGCGGGTCAAAGAGGAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
2359 2905 1.443802 GCGGGTCAAAGAGGAAGAAG 58.556 55.000 0.00 0.00 0.00 2.85
2360 2906 1.946283 GCGGGTCAAAGAGGAAGAAGG 60.946 57.143 0.00 0.00 0.00 3.46
2361 2907 1.339151 CGGGTCAAAGAGGAAGAAGGG 60.339 57.143 0.00 0.00 0.00 3.95
2362 2908 1.985895 GGGTCAAAGAGGAAGAAGGGA 59.014 52.381 0.00 0.00 0.00 4.20
2364 2910 3.371059 GGGTCAAAGAGGAAGAAGGGATC 60.371 52.174 0.00 0.00 0.00 3.36
2365 2911 3.371059 GGTCAAAGAGGAAGAAGGGATCC 60.371 52.174 1.92 1.92 35.88 3.36
2366 2912 2.846827 TCAAAGAGGAAGAAGGGATCCC 59.153 50.000 24.59 24.59 36.31 3.85
2367 2913 1.501582 AAGAGGAAGAAGGGATCCCG 58.498 55.000 25.48 0.00 41.95 5.14
2411 2957 4.749310 AGGTCTCGGCTGCGCTTG 62.749 66.667 9.73 2.28 0.00 4.01
2459 3010 1.333308 TCGTGTGGCAAATGTCAACAG 59.667 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302285 CAGGTCAGATTGGCTGCCT 59.698 57.895 21.03 0.00 45.75 4.75
1 2 0.253044 TACAGGTCAGATTGGCTGCC 59.747 55.000 12.87 12.87 44.52 4.85
2 3 2.113860 TTACAGGTCAGATTGGCTGC 57.886 50.000 0.00 0.00 44.52 5.25
3 4 3.937706 CTCTTTACAGGTCAGATTGGCTG 59.062 47.826 0.00 0.00 46.31 4.85
4 5 3.620966 GCTCTTTACAGGTCAGATTGGCT 60.621 47.826 0.00 0.00 0.00 4.75
5 6 2.680339 GCTCTTTACAGGTCAGATTGGC 59.320 50.000 0.00 0.00 0.00 4.52
6 7 2.932614 CGCTCTTTACAGGTCAGATTGG 59.067 50.000 0.00 0.00 0.00 3.16
7 8 2.349886 GCGCTCTTTACAGGTCAGATTG 59.650 50.000 0.00 0.00 0.00 2.67
8 9 2.622436 GCGCTCTTTACAGGTCAGATT 58.378 47.619 0.00 0.00 0.00 2.40
9 10 1.134670 GGCGCTCTTTACAGGTCAGAT 60.135 52.381 7.64 0.00 0.00 2.90
10 11 0.246635 GGCGCTCTTTACAGGTCAGA 59.753 55.000 7.64 0.00 0.00 3.27
11 12 0.247736 AGGCGCTCTTTACAGGTCAG 59.752 55.000 7.64 0.00 0.00 3.51
12 13 0.685097 AAGGCGCTCTTTACAGGTCA 59.315 50.000 7.64 0.00 29.99 4.02
13 14 1.809684 AAAGGCGCTCTTTACAGGTC 58.190 50.000 18.42 0.00 43.35 3.85
14 15 1.880027 CAAAAGGCGCTCTTTACAGGT 59.120 47.619 19.64 5.76 44.30 4.00
15 16 1.200020 CCAAAAGGCGCTCTTTACAGG 59.800 52.381 19.64 17.41 44.30 4.00
16 17 1.401539 GCCAAAAGGCGCTCTTTACAG 60.402 52.381 19.64 13.76 44.30 2.74
17 18 0.596082 GCCAAAAGGCGCTCTTTACA 59.404 50.000 19.64 0.00 44.30 2.41
18 19 3.401577 GCCAAAAGGCGCTCTTTAC 57.598 52.632 19.64 11.45 44.30 2.01
28 29 3.431725 GTCGAGCCCGCCAAAAGG 61.432 66.667 0.00 0.00 35.37 3.11
29 30 2.668212 TGTCGAGCCCGCCAAAAG 60.668 61.111 0.00 0.00 35.37 2.27
30 31 2.668212 CTGTCGAGCCCGCCAAAA 60.668 61.111 0.00 0.00 35.37 2.44
31 32 3.936203 ACTGTCGAGCCCGCCAAA 61.936 61.111 0.00 0.00 35.37 3.28
32 33 4.680237 CACTGTCGAGCCCGCCAA 62.680 66.667 0.00 0.00 35.37 4.52
43 44 1.361668 CCATGTAGCGGCACACTGTC 61.362 60.000 1.45 0.00 0.00 3.51
44 45 1.375908 CCATGTAGCGGCACACTGT 60.376 57.895 1.45 0.00 0.00 3.55
45 46 3.489731 CCATGTAGCGGCACACTG 58.510 61.111 1.45 5.65 0.00 3.66
52 53 1.149174 AGGGAATGCCATGTAGCGG 59.851 57.895 0.00 0.00 35.15 5.52
53 54 2.324215 CAGGGAATGCCATGTAGCG 58.676 57.895 0.00 0.00 40.98 4.26
59 60 1.617804 CCAGTCAACAGGGAATGCCAT 60.618 52.381 0.00 0.00 31.86 4.40
60 61 0.251297 CCAGTCAACAGGGAATGCCA 60.251 55.000 0.00 0.00 31.86 4.92
61 62 0.967380 CCCAGTCAACAGGGAATGCC 60.967 60.000 4.66 0.00 44.73 4.40
62 63 0.967380 CCCCAGTCAACAGGGAATGC 60.967 60.000 11.93 0.00 44.73 3.56
63 64 0.967380 GCCCCAGTCAACAGGGAATG 60.967 60.000 11.93 0.00 44.73 2.67
64 65 1.384191 GCCCCAGTCAACAGGGAAT 59.616 57.895 11.93 0.00 44.73 3.01
65 66 1.434513 ATGCCCCAGTCAACAGGGAA 61.435 55.000 11.93 1.99 44.73 3.97
66 67 1.852157 ATGCCCCAGTCAACAGGGA 60.852 57.895 11.93 0.00 44.73 4.20
67 68 1.679977 CATGCCCCAGTCAACAGGG 60.680 63.158 3.69 3.69 44.33 4.45
68 69 1.679977 CCATGCCCCAGTCAACAGG 60.680 63.158 0.00 0.00 0.00 4.00
69 70 2.345760 GCCATGCCCCAGTCAACAG 61.346 63.158 0.00 0.00 0.00 3.16
70 71 2.283101 GCCATGCCCCAGTCAACA 60.283 61.111 0.00 0.00 0.00 3.33
71 72 3.070576 GGCCATGCCCCAGTCAAC 61.071 66.667 0.00 0.00 44.06 3.18
85 86 1.737816 CTGTGGCTATGCATTGGCC 59.262 57.895 26.86 26.67 45.45 5.36
86 87 1.066918 GCTGTGGCTATGCATTGGC 59.933 57.895 24.19 24.19 36.58 4.52
87 88 1.357690 CGCTGTGGCTATGCATTGG 59.642 57.895 3.54 0.00 36.09 3.16
88 89 0.248336 CACGCTGTGGCTATGCATTG 60.248 55.000 3.54 3.55 36.09 2.82
89 90 0.392863 TCACGCTGTGGCTATGCATT 60.393 50.000 3.54 0.00 33.87 3.56
90 91 0.179037 ATCACGCTGTGGCTATGCAT 60.179 50.000 3.79 3.79 33.87 3.96
91 92 1.091197 CATCACGCTGTGGCTATGCA 61.091 55.000 8.46 0.00 33.87 3.96
92 93 1.645455 CATCACGCTGTGGCTATGC 59.355 57.895 8.46 0.00 33.87 3.14
93 94 1.645455 GCATCACGCTGTGGCTATG 59.355 57.895 8.46 6.65 37.77 2.23
94 95 1.524621 GGCATCACGCTGTGGCTAT 60.525 57.895 8.46 0.00 41.91 2.97
95 96 2.125147 GGCATCACGCTGTGGCTA 60.125 61.111 8.46 0.00 41.91 3.93
96 97 4.025858 AGGCATCACGCTGTGGCT 62.026 61.111 8.46 5.02 45.16 4.75
97 98 3.503363 GAGGCATCACGCTGTGGC 61.503 66.667 8.46 5.47 41.91 5.01
98 99 2.046988 TGAGGCATCACGCTGTGG 60.047 61.111 0.00 0.00 41.91 4.17
99 100 3.171987 GTGAGGCATCACGCTGTG 58.828 61.111 16.59 2.79 46.01 3.66
110 111 2.057137 TCCTAAATGGCATGTGAGGC 57.943 50.000 14.68 0.00 35.26 4.70
111 112 3.319972 CCAATCCTAAATGGCATGTGAGG 59.680 47.826 13.73 13.73 35.26 3.86
112 113 4.209538 TCCAATCCTAAATGGCATGTGAG 58.790 43.478 0.00 0.00 36.62 3.51
113 114 4.248174 TCCAATCCTAAATGGCATGTGA 57.752 40.909 0.00 0.00 36.62 3.58
114 115 6.653526 TTATCCAATCCTAAATGGCATGTG 57.346 37.500 0.00 0.00 36.62 3.21
115 116 8.954834 TTATTATCCAATCCTAAATGGCATGT 57.045 30.769 0.00 0.00 36.62 3.21
141 142 8.576442 CGCTTCCCTATCCAAACATATATTTTT 58.424 33.333 0.00 0.00 0.00 1.94
142 143 7.176690 CCGCTTCCCTATCCAAACATATATTTT 59.823 37.037 0.00 0.00 0.00 1.82
143 144 6.659242 CCGCTTCCCTATCCAAACATATATTT 59.341 38.462 0.00 0.00 0.00 1.40
144 145 6.180472 CCGCTTCCCTATCCAAACATATATT 58.820 40.000 0.00 0.00 0.00 1.28
145 146 5.339200 CCCGCTTCCCTATCCAAACATATAT 60.339 44.000 0.00 0.00 0.00 0.86
146 147 4.019681 CCCGCTTCCCTATCCAAACATATA 60.020 45.833 0.00 0.00 0.00 0.86
147 148 3.244911 CCCGCTTCCCTATCCAAACATAT 60.245 47.826 0.00 0.00 0.00 1.78
148 149 2.105821 CCCGCTTCCCTATCCAAACATA 59.894 50.000 0.00 0.00 0.00 2.29
149 150 1.133792 CCCGCTTCCCTATCCAAACAT 60.134 52.381 0.00 0.00 0.00 2.71
150 151 0.254747 CCCGCTTCCCTATCCAAACA 59.745 55.000 0.00 0.00 0.00 2.83
151 152 0.544697 TCCCGCTTCCCTATCCAAAC 59.455 55.000 0.00 0.00 0.00 2.93
152 153 1.420138 GATCCCGCTTCCCTATCCAAA 59.580 52.381 0.00 0.00 0.00 3.28
153 154 1.056660 GATCCCGCTTCCCTATCCAA 58.943 55.000 0.00 0.00 0.00 3.53
154 155 0.836400 GGATCCCGCTTCCCTATCCA 60.836 60.000 0.00 0.00 36.83 3.41
155 156 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
156 157 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
157 158 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
158 159 0.264955 AAGAGGATCCCGCTTCCCTA 59.735 55.000 8.55 0.00 39.34 3.53
159 160 1.003573 AAGAGGATCCCGCTTCCCT 59.996 57.895 8.55 0.00 39.34 4.20
160 161 3.648694 AAGAGGATCCCGCTTCCC 58.351 61.111 8.55 0.00 39.34 3.97
163 164 1.484240 CTCTTGAAGAGGATCCCGCTT 59.516 52.381 14.32 15.32 45.81 4.68
164 165 1.118838 CTCTTGAAGAGGATCCCGCT 58.881 55.000 14.32 3.15 38.67 5.52
165 166 1.115467 TCTCTTGAAGAGGATCCCGC 58.885 55.000 21.04 0.33 42.54 6.13
166 167 1.066303 CGTCTCTTGAAGAGGATCCCG 59.934 57.143 21.04 11.97 42.54 5.14
167 168 1.410882 CCGTCTCTTGAAGAGGATCCC 59.589 57.143 21.04 0.00 42.54 3.85
168 169 1.410882 CCCGTCTCTTGAAGAGGATCC 59.589 57.143 21.04 2.48 42.54 3.36
169 170 2.104170 ACCCGTCTCTTGAAGAGGATC 58.896 52.381 21.04 11.37 42.54 3.36
170 171 1.827969 CACCCGTCTCTTGAAGAGGAT 59.172 52.381 21.04 1.26 42.54 3.24
171 172 1.257743 CACCCGTCTCTTGAAGAGGA 58.742 55.000 21.04 6.34 42.54 3.71
172 173 0.390472 GCACCCGTCTCTTGAAGAGG 60.390 60.000 21.04 9.29 42.54 3.69
173 174 0.605589 AGCACCCGTCTCTTGAAGAG 59.394 55.000 15.90 15.90 43.64 2.85
174 175 1.048601 AAGCACCCGTCTCTTGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
175 176 2.231478 TCTAAGCACCCGTCTCTTGAAG 59.769 50.000 0.00 0.00 0.00 3.02
176 177 2.231478 CTCTAAGCACCCGTCTCTTGAA 59.769 50.000 0.00 0.00 0.00 2.69
177 178 1.819288 CTCTAAGCACCCGTCTCTTGA 59.181 52.381 0.00 0.00 0.00 3.02
178 179 1.819288 TCTCTAAGCACCCGTCTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
179 180 1.819903 GTCTCTAAGCACCCGTCTCTT 59.180 52.381 0.00 0.00 0.00 2.85
180 181 1.271982 TGTCTCTAAGCACCCGTCTCT 60.272 52.381 0.00 0.00 0.00 3.10
181 182 1.174783 TGTCTCTAAGCACCCGTCTC 58.825 55.000 0.00 0.00 0.00 3.36
182 183 1.629043 TTGTCTCTAAGCACCCGTCT 58.371 50.000 0.00 0.00 0.00 4.18
183 184 2.450609 TTTGTCTCTAAGCACCCGTC 57.549 50.000 0.00 0.00 0.00 4.79
184 185 2.922740 TTTTGTCTCTAAGCACCCGT 57.077 45.000 0.00 0.00 0.00 5.28
185 186 3.058914 CACTTTTTGTCTCTAAGCACCCG 60.059 47.826 0.00 0.00 0.00 5.28
186 187 3.883489 ACACTTTTTGTCTCTAAGCACCC 59.117 43.478 0.00 0.00 29.79 4.61
187 188 5.163652 ACAACACTTTTTGTCTCTAAGCACC 60.164 40.000 0.00 0.00 37.51 5.01
188 189 5.880341 ACAACACTTTTTGTCTCTAAGCAC 58.120 37.500 0.00 0.00 37.51 4.40
198 199 4.974368 TGAATCGGACAACACTTTTTGT 57.026 36.364 0.00 0.00 42.55 2.83
199 200 7.647715 ACTTTATGAATCGGACAACACTTTTTG 59.352 33.333 0.00 0.00 0.00 2.44
200 201 7.712797 ACTTTATGAATCGGACAACACTTTTT 58.287 30.769 0.00 0.00 0.00 1.94
201 202 7.272037 ACTTTATGAATCGGACAACACTTTT 57.728 32.000 0.00 0.00 0.00 2.27
202 203 6.877611 ACTTTATGAATCGGACAACACTTT 57.122 33.333 0.00 0.00 0.00 2.66
203 204 6.485313 TCAACTTTATGAATCGGACAACACTT 59.515 34.615 0.00 0.00 0.00 3.16
204 205 5.995282 TCAACTTTATGAATCGGACAACACT 59.005 36.000 0.00 0.00 0.00 3.55
205 206 6.236017 TCAACTTTATGAATCGGACAACAC 57.764 37.500 0.00 0.00 0.00 3.32
206 207 6.869315 TTCAACTTTATGAATCGGACAACA 57.131 33.333 0.00 0.00 34.50 3.33
207 208 8.568732 TTTTTCAACTTTATGAATCGGACAAC 57.431 30.769 0.00 0.00 38.98 3.32
208 209 8.410141 ACTTTTTCAACTTTATGAATCGGACAA 58.590 29.630 0.00 0.00 38.98 3.18
209 210 7.936584 ACTTTTTCAACTTTATGAATCGGACA 58.063 30.769 0.00 0.00 38.98 4.02
210 211 8.690840 CAACTTTTTCAACTTTATGAATCGGAC 58.309 33.333 0.00 0.00 38.98 4.79
211 212 8.625651 TCAACTTTTTCAACTTTATGAATCGGA 58.374 29.630 0.00 0.00 38.98 4.55
212 213 8.795786 TCAACTTTTTCAACTTTATGAATCGG 57.204 30.769 0.00 0.00 38.98 4.18
217 218 9.323985 CCCATTTCAACTTTTTCAACTTTATGA 57.676 29.630 0.00 0.00 0.00 2.15
218 219 8.558700 CCCCATTTCAACTTTTTCAACTTTATG 58.441 33.333 0.00 0.00 0.00 1.90
219 220 8.490311 TCCCCATTTCAACTTTTTCAACTTTAT 58.510 29.630 0.00 0.00 0.00 1.40
220 221 7.852263 TCCCCATTTCAACTTTTTCAACTTTA 58.148 30.769 0.00 0.00 0.00 1.85
221 222 6.716284 TCCCCATTTCAACTTTTTCAACTTT 58.284 32.000 0.00 0.00 0.00 2.66
222 223 6.156083 TCTCCCCATTTCAACTTTTTCAACTT 59.844 34.615 0.00 0.00 0.00 2.66
223 224 5.660864 TCTCCCCATTTCAACTTTTTCAACT 59.339 36.000 0.00 0.00 0.00 3.16
224 225 5.912892 TCTCCCCATTTCAACTTTTTCAAC 58.087 37.500 0.00 0.00 0.00 3.18
225 226 6.407979 CCTTCTCCCCATTTCAACTTTTTCAA 60.408 38.462 0.00 0.00 0.00 2.69
226 227 5.070313 CCTTCTCCCCATTTCAACTTTTTCA 59.930 40.000 0.00 0.00 0.00 2.69
227 228 5.304357 TCCTTCTCCCCATTTCAACTTTTTC 59.696 40.000 0.00 0.00 0.00 2.29
228 229 5.215845 TCCTTCTCCCCATTTCAACTTTTT 58.784 37.500 0.00 0.00 0.00 1.94
229 230 4.814967 TCCTTCTCCCCATTTCAACTTTT 58.185 39.130 0.00 0.00 0.00 2.27
230 231 4.469469 TCCTTCTCCCCATTTCAACTTT 57.531 40.909 0.00 0.00 0.00 2.66
231 232 4.469469 TTCCTTCTCCCCATTTCAACTT 57.531 40.909 0.00 0.00 0.00 2.66
232 233 4.347607 CATTCCTTCTCCCCATTTCAACT 58.652 43.478 0.00 0.00 0.00 3.16
233 234 3.118992 GCATTCCTTCTCCCCATTTCAAC 60.119 47.826 0.00 0.00 0.00 3.18
234 235 3.099141 GCATTCCTTCTCCCCATTTCAA 58.901 45.455 0.00 0.00 0.00 2.69
235 236 2.042842 TGCATTCCTTCTCCCCATTTCA 59.957 45.455 0.00 0.00 0.00 2.69
236 237 2.738743 TGCATTCCTTCTCCCCATTTC 58.261 47.619 0.00 0.00 0.00 2.17
237 238 2.925966 TGCATTCCTTCTCCCCATTT 57.074 45.000 0.00 0.00 0.00 2.32
238 239 2.023695 ACATGCATTCCTTCTCCCCATT 60.024 45.455 0.00 0.00 0.00 3.16
239 240 1.572415 ACATGCATTCCTTCTCCCCAT 59.428 47.619 0.00 0.00 0.00 4.00
240 241 1.002069 ACATGCATTCCTTCTCCCCA 58.998 50.000 0.00 0.00 0.00 4.96
241 242 1.341383 ACACATGCATTCCTTCTCCCC 60.341 52.381 0.00 0.00 0.00 4.81
242 243 2.134789 ACACATGCATTCCTTCTCCC 57.865 50.000 0.00 0.00 0.00 4.30
243 244 3.624861 CACTACACATGCATTCCTTCTCC 59.375 47.826 0.00 0.00 0.00 3.71
244 245 4.507710 TCACTACACATGCATTCCTTCTC 58.492 43.478 0.00 0.00 0.00 2.87
245 246 4.223700 TCTCACTACACATGCATTCCTTCT 59.776 41.667 0.00 0.00 0.00 2.85
246 247 4.507710 TCTCACTACACATGCATTCCTTC 58.492 43.478 0.00 0.00 0.00 3.46
247 248 4.019860 ACTCTCACTACACATGCATTCCTT 60.020 41.667 0.00 0.00 0.00 3.36
248 249 3.517100 ACTCTCACTACACATGCATTCCT 59.483 43.478 0.00 0.00 0.00 3.36
249 250 3.866651 ACTCTCACTACACATGCATTCC 58.133 45.455 0.00 0.00 0.00 3.01
250 251 3.549471 CGACTCTCACTACACATGCATTC 59.451 47.826 0.00 0.00 0.00 2.67
251 252 3.515630 CGACTCTCACTACACATGCATT 58.484 45.455 0.00 0.00 0.00 3.56
252 253 2.736719 GCGACTCTCACTACACATGCAT 60.737 50.000 0.00 0.00 0.00 3.96
253 254 1.402852 GCGACTCTCACTACACATGCA 60.403 52.381 0.00 0.00 0.00 3.96
254 255 1.135257 AGCGACTCTCACTACACATGC 60.135 52.381 0.00 0.00 0.00 4.06
255 256 2.929531 AGCGACTCTCACTACACATG 57.070 50.000 0.00 0.00 0.00 3.21
256 257 3.944055 AAAGCGACTCTCACTACACAT 57.056 42.857 0.00 0.00 0.00 3.21
257 258 3.728076 AAAAGCGACTCTCACTACACA 57.272 42.857 0.00 0.00 0.00 3.72
258 259 6.586844 AGAATAAAAAGCGACTCTCACTACAC 59.413 38.462 0.00 0.00 0.00 2.90
259 260 6.688578 AGAATAAAAAGCGACTCTCACTACA 58.311 36.000 0.00 0.00 0.00 2.74
260 261 7.583860 AAGAATAAAAAGCGACTCTCACTAC 57.416 36.000 0.00 0.00 0.00 2.73
261 262 7.870954 TCAAAGAATAAAAAGCGACTCTCACTA 59.129 33.333 0.00 0.00 0.00 2.74
262 263 6.706270 TCAAAGAATAAAAAGCGACTCTCACT 59.294 34.615 0.00 0.00 0.00 3.41
263 264 6.888430 TCAAAGAATAAAAAGCGACTCTCAC 58.112 36.000 0.00 0.00 0.00 3.51
264 265 7.387673 TCATCAAAGAATAAAAAGCGACTCTCA 59.612 33.333 0.00 0.00 0.00 3.27
265 266 7.743104 TCATCAAAGAATAAAAAGCGACTCTC 58.257 34.615 0.00 0.00 0.00 3.20
266 267 7.672983 TCATCAAAGAATAAAAAGCGACTCT 57.327 32.000 0.00 0.00 0.00 3.24
267 268 8.017946 ACTTCATCAAAGAATAAAAAGCGACTC 58.982 33.333 0.00 0.00 38.44 3.36
268 269 7.875971 ACTTCATCAAAGAATAAAAAGCGACT 58.124 30.769 0.00 0.00 38.44 4.18
269 270 7.271438 GGACTTCATCAAAGAATAAAAAGCGAC 59.729 37.037 0.00 0.00 38.44 5.19
270 271 7.040755 TGGACTTCATCAAAGAATAAAAAGCGA 60.041 33.333 0.00 0.00 38.44 4.93
271 272 7.061094 GTGGACTTCATCAAAGAATAAAAAGCG 59.939 37.037 0.00 0.00 38.44 4.68
272 273 8.084684 AGTGGACTTCATCAAAGAATAAAAAGC 58.915 33.333 0.00 0.00 38.44 3.51
275 276 9.793259 ACTAGTGGACTTCATCAAAGAATAAAA 57.207 29.630 0.00 0.00 38.44 1.52
278 279 9.256228 ACTACTAGTGGACTTCATCAAAGAATA 57.744 33.333 13.86 0.00 38.44 1.75
279 280 8.140112 ACTACTAGTGGACTTCATCAAAGAAT 57.860 34.615 13.86 0.00 38.44 2.40
280 281 7.540474 ACTACTAGTGGACTTCATCAAAGAA 57.460 36.000 13.86 0.00 38.44 2.52
281 282 7.148052 GCTACTACTAGTGGACTTCATCAAAGA 60.148 40.741 13.86 0.00 38.44 2.52
282 283 6.975772 GCTACTACTAGTGGACTTCATCAAAG 59.024 42.308 13.86 0.00 41.08 2.77
283 284 6.663953 AGCTACTACTAGTGGACTTCATCAAA 59.336 38.462 13.86 0.00 0.00 2.69
284 285 6.188407 AGCTACTACTAGTGGACTTCATCAA 58.812 40.000 13.86 0.00 0.00 2.57
285 286 5.756918 AGCTACTACTAGTGGACTTCATCA 58.243 41.667 13.86 0.00 0.00 3.07
286 287 6.500041 CAAGCTACTACTAGTGGACTTCATC 58.500 44.000 13.86 0.00 0.00 2.92
287 288 5.163499 GCAAGCTACTACTAGTGGACTTCAT 60.163 44.000 13.86 0.00 0.00 2.57
288 289 4.158025 GCAAGCTACTACTAGTGGACTTCA 59.842 45.833 13.86 0.00 0.00 3.02
289 290 4.158025 TGCAAGCTACTACTAGTGGACTTC 59.842 45.833 13.86 8.01 0.00 3.01
290 291 4.082136 GTGCAAGCTACTACTAGTGGACTT 60.082 45.833 13.86 10.08 0.00 3.01
291 292 3.444388 GTGCAAGCTACTACTAGTGGACT 59.556 47.826 13.86 4.47 0.00 3.85
292 293 3.444388 AGTGCAAGCTACTACTAGTGGAC 59.556 47.826 13.86 1.28 0.00 4.02
293 294 3.444034 CAGTGCAAGCTACTACTAGTGGA 59.556 47.826 13.86 0.00 0.00 4.02
294 295 3.444034 TCAGTGCAAGCTACTACTAGTGG 59.556 47.826 5.39 4.89 0.00 4.00
295 296 4.439426 CCTCAGTGCAAGCTACTACTAGTG 60.439 50.000 5.39 0.00 0.00 2.74
296 297 3.697045 CCTCAGTGCAAGCTACTACTAGT 59.303 47.826 0.00 0.00 0.00 2.57
297 298 3.948473 TCCTCAGTGCAAGCTACTACTAG 59.052 47.826 0.00 0.00 0.00 2.57
298 299 3.948473 CTCCTCAGTGCAAGCTACTACTA 59.052 47.826 0.00 0.00 0.00 1.82
299 300 2.757868 CTCCTCAGTGCAAGCTACTACT 59.242 50.000 0.00 0.00 0.00 2.57
300 301 2.755655 TCTCCTCAGTGCAAGCTACTAC 59.244 50.000 0.00 0.00 0.00 2.73
301 302 3.087370 TCTCCTCAGTGCAAGCTACTA 57.913 47.619 0.00 0.00 0.00 1.82
302 303 1.930251 TCTCCTCAGTGCAAGCTACT 58.070 50.000 0.00 0.00 0.00 2.57
303 304 2.751166 TTCTCCTCAGTGCAAGCTAC 57.249 50.000 0.00 0.00 0.00 3.58
304 305 3.769739 TTTTCTCCTCAGTGCAAGCTA 57.230 42.857 0.00 0.00 0.00 3.32
305 306 2.645838 TTTTCTCCTCAGTGCAAGCT 57.354 45.000 0.00 0.00 0.00 3.74
326 327 9.762933 AGTAATTTAAAGCACATGTGTTGATTT 57.237 25.926 26.01 21.12 0.00 2.17
327 328 9.762933 AAGTAATTTAAAGCACATGTGTTGATT 57.237 25.926 26.01 18.59 0.00 2.57
328 329 9.762933 AAAGTAATTTAAAGCACATGTGTTGAT 57.237 25.926 26.01 15.44 0.00 2.57
329 330 9.593134 AAAAGTAATTTAAAGCACATGTGTTGA 57.407 25.926 26.01 10.25 0.00 3.18
336 337 9.581099 CGGGATAAAAAGTAATTTAAAGCACAT 57.419 29.630 0.00 0.00 0.00 3.21
337 338 8.794553 TCGGGATAAAAAGTAATTTAAAGCACA 58.205 29.630 0.00 0.00 0.00 4.57
338 339 9.285770 CTCGGGATAAAAAGTAATTTAAAGCAC 57.714 33.333 0.00 0.00 0.00 4.40
339 340 9.233649 TCTCGGGATAAAAAGTAATTTAAAGCA 57.766 29.630 0.00 0.00 0.00 3.91
340 341 9.499585 GTCTCGGGATAAAAAGTAATTTAAAGC 57.500 33.333 0.00 0.00 0.00 3.51
345 346 8.893727 CAGATGTCTCGGGATAAAAAGTAATTT 58.106 33.333 0.00 0.00 0.00 1.82
346 347 8.047310 ACAGATGTCTCGGGATAAAAAGTAATT 58.953 33.333 0.00 0.00 0.00 1.40
347 348 7.565680 ACAGATGTCTCGGGATAAAAAGTAAT 58.434 34.615 0.00 0.00 0.00 1.89
348 349 6.942976 ACAGATGTCTCGGGATAAAAAGTAA 58.057 36.000 0.00 0.00 0.00 2.24
349 350 6.540438 ACAGATGTCTCGGGATAAAAAGTA 57.460 37.500 0.00 0.00 0.00 2.24
350 351 5.422214 ACAGATGTCTCGGGATAAAAAGT 57.578 39.130 0.00 0.00 0.00 2.66
351 352 7.710907 TGAATACAGATGTCTCGGGATAAAAAG 59.289 37.037 0.00 0.00 0.00 2.27
352 353 7.561251 TGAATACAGATGTCTCGGGATAAAAA 58.439 34.615 0.00 0.00 0.00 1.94
353 354 7.119709 TGAATACAGATGTCTCGGGATAAAA 57.880 36.000 0.00 0.00 0.00 1.52
354 355 6.724893 TGAATACAGATGTCTCGGGATAAA 57.275 37.500 0.00 0.00 0.00 1.40
355 356 6.918067 ATGAATACAGATGTCTCGGGATAA 57.082 37.500 0.00 0.00 0.00 1.75
356 357 7.416777 GCATATGAATACAGATGTCTCGGGATA 60.417 40.741 6.97 0.00 44.50 2.59
357 358 6.629068 GCATATGAATACAGATGTCTCGGGAT 60.629 42.308 6.97 0.00 44.50 3.85
358 359 5.336770 GCATATGAATACAGATGTCTCGGGA 60.337 44.000 6.97 0.00 44.50 5.14
359 360 4.867047 GCATATGAATACAGATGTCTCGGG 59.133 45.833 6.97 0.00 44.50 5.14
360 361 4.867047 GGCATATGAATACAGATGTCTCGG 59.133 45.833 6.97 0.00 43.96 4.63
361 362 5.347093 GTGGCATATGAATACAGATGTCTCG 59.653 44.000 6.97 0.00 46.37 4.04
362 363 5.641209 GGTGGCATATGAATACAGATGTCTC 59.359 44.000 6.97 6.88 46.37 3.36
363 364 5.072193 TGGTGGCATATGAATACAGATGTCT 59.928 40.000 6.97 0.00 46.37 3.41
364 365 5.308014 TGGTGGCATATGAATACAGATGTC 58.692 41.667 6.97 0.00 46.40 3.06
365 366 5.308976 TGGTGGCATATGAATACAGATGT 57.691 39.130 6.97 0.00 44.50 3.06
366 367 6.208007 ACAATGGTGGCATATGAATACAGATG 59.792 38.462 6.97 0.00 45.17 2.90
367 368 6.309357 ACAATGGTGGCATATGAATACAGAT 58.691 36.000 6.97 0.00 0.00 2.90
368 369 5.693961 ACAATGGTGGCATATGAATACAGA 58.306 37.500 6.97 0.00 0.00 3.41
369 370 6.486320 TGTACAATGGTGGCATATGAATACAG 59.514 38.462 6.97 0.00 0.00 2.74
370 371 6.360618 TGTACAATGGTGGCATATGAATACA 58.639 36.000 6.97 0.00 0.00 2.29
371 372 6.875948 TGTACAATGGTGGCATATGAATAC 57.124 37.500 6.97 1.49 0.00 1.89
372 373 7.523544 GCAATGTACAATGGTGGCATATGAATA 60.524 37.037 12.73 0.00 0.00 1.75
373 374 6.739286 GCAATGTACAATGGTGGCATATGAAT 60.739 38.462 12.73 0.00 0.00 2.57
374 375 5.451659 GCAATGTACAATGGTGGCATATGAA 60.452 40.000 12.73 0.00 0.00 2.57
375 376 4.037803 GCAATGTACAATGGTGGCATATGA 59.962 41.667 12.73 0.00 0.00 2.15
376 377 4.202131 TGCAATGTACAATGGTGGCATATG 60.202 41.667 12.73 0.00 0.00 1.78
377 378 3.959449 TGCAATGTACAATGGTGGCATAT 59.041 39.130 12.73 0.00 0.00 1.78
378 379 3.359950 TGCAATGTACAATGGTGGCATA 58.640 40.909 12.73 0.00 0.00 3.14
379 380 2.177734 TGCAATGTACAATGGTGGCAT 58.822 42.857 12.73 0.00 0.00 4.40
380 381 1.625511 TGCAATGTACAATGGTGGCA 58.374 45.000 12.73 2.62 0.00 4.92
381 382 2.542597 CATGCAATGTACAATGGTGGC 58.457 47.619 12.73 0.00 40.20 5.01
382 383 2.739287 GCCATGCAATGTACAATGGTGG 60.739 50.000 20.37 15.76 44.81 4.61
383 384 2.094130 TGCCATGCAATGTACAATGGTG 60.094 45.455 20.37 9.55 44.81 4.17
384 385 2.177734 TGCCATGCAATGTACAATGGT 58.822 42.857 20.37 0.00 44.81 3.55
385 386 2.963548 TGCCATGCAATGTACAATGG 57.036 45.000 16.78 16.78 44.81 3.16
404 405 3.282157 GCATCGTGGCATCGGCAT 61.282 61.111 9.05 0.00 43.71 4.40
431 432 1.082690 CGCTCAGAAAGAAAGAGGCC 58.917 55.000 0.00 0.00 0.00 5.19
442 443 2.583441 CCAGGGTGGTCGCTCAGAA 61.583 63.158 0.00 0.00 34.60 3.02
495 496 0.975040 TGGTAAATGGCATGGTGGGC 60.975 55.000 0.00 0.00 0.00 5.36
496 497 1.113788 CTGGTAAATGGCATGGTGGG 58.886 55.000 0.00 0.00 0.00 4.61
500 501 0.461135 GGCACTGGTAAATGGCATGG 59.539 55.000 0.00 0.00 40.91 3.66
526 527 4.403752 TCTGTATCACAGGAACTCTGGATG 59.596 45.833 6.48 0.00 45.94 3.51
539 540 7.278646 GCATCTACACAAATTCTCTGTATCACA 59.721 37.037 0.00 0.00 0.00 3.58
540 541 7.493971 AGCATCTACACAAATTCTCTGTATCAC 59.506 37.037 0.00 0.00 0.00 3.06
541 542 7.559486 AGCATCTACACAAATTCTCTGTATCA 58.441 34.615 0.00 0.00 0.00 2.15
542 543 8.071122 GAGCATCTACACAAATTCTCTGTATC 57.929 38.462 0.00 0.00 0.00 2.24
561 581 7.773149 TCTGTTAAGTTCCTAACTAGAGCATC 58.227 38.462 0.00 0.00 41.91 3.91
575 603 5.985781 TGTTCATTCGCTTCTGTTAAGTTC 58.014 37.500 0.00 0.00 0.00 3.01
584 612 4.130118 AGTTCAACTGTTCATTCGCTTCT 58.870 39.130 0.00 0.00 0.00 2.85
628 656 6.460123 CCGCCTTTTCCGAGTACTAATTAGTA 60.460 42.308 19.30 19.30 37.73 1.82
630 658 4.743644 CCGCCTTTTCCGAGTACTAATTAG 59.256 45.833 11.05 11.05 0.00 1.73
637 665 2.104859 GCCCGCCTTTTCCGAGTAC 61.105 63.158 0.00 0.00 0.00 2.73
642 670 3.747976 CTTGGCCCGCCTTTTCCG 61.748 66.667 7.35 0.00 36.94 4.30
690 718 0.320374 TTCGTTGTAGGCTGGTGAGG 59.680 55.000 0.00 0.00 0.00 3.86
693 721 0.319211 TCGTTCGTTGTAGGCTGGTG 60.319 55.000 0.00 0.00 0.00 4.17
800 836 7.056844 ACCTAAAATGAAAATCAACCGGAAA 57.943 32.000 9.46 0.00 0.00 3.13
805 841 8.349568 AGGTCTACCTAAAATGAAAATCAACC 57.650 34.615 0.00 0.00 46.48 3.77
925 961 4.410228 TGATATATATGGAGGCTTGGAGGC 59.590 45.833 0.00 0.00 41.73 4.70
977 1021 4.962836 GTGGGTGGTGCTGCTGCT 62.963 66.667 17.00 0.00 40.48 4.24
979 1023 4.275508 AGGTGGGTGGTGCTGCTG 62.276 66.667 0.00 0.00 0.00 4.41
1263 1325 2.389715 CAGAAGAGGTTCTCCCCGTAT 58.610 52.381 0.00 0.00 41.40 3.06
1269 1331 0.252742 TCCCCCAGAAGAGGTTCTCC 60.253 60.000 0.00 0.00 41.40 3.71
1431 1493 3.190849 CACTCGACCATGGCGCAG 61.191 66.667 13.04 16.15 0.00 5.18
1579 1641 4.129737 CGAAGAAGGCCGGCGAGA 62.130 66.667 22.54 0.00 0.00 4.04
1588 1650 3.901797 AACGGGGCTGCGAAGAAGG 62.902 63.158 0.00 0.00 0.00 3.46
1677 1745 2.921634 TCGTCTTCAACTCTCGATGG 57.078 50.000 0.00 0.00 0.00 3.51
1689 1757 3.251817 TCGCCATCGATTCGTCTTC 57.748 52.632 14.19 0.00 40.21 2.87
1734 1802 4.276183 GCAGCACTAGTAGTATAGCAGTGA 59.724 45.833 12.22 0.00 39.13 3.41
1735 1803 4.036852 TGCAGCACTAGTAGTATAGCAGTG 59.963 45.833 14.93 7.10 39.65 3.66
1750 1820 6.044682 GCAAGGATAAATAAAATGCAGCACT 58.955 36.000 0.00 0.00 32.80 4.40
1779 1853 9.524496 TCGTAACCACAACAGGAGTATATATAT 57.476 33.333 0.00 0.00 0.00 0.86
1780 1854 8.922931 TCGTAACCACAACAGGAGTATATATA 57.077 34.615 0.00 0.00 0.00 0.86
1810 2152 7.114754 TGTAGCTCAGGATTCATTTCAGATTT 58.885 34.615 0.00 0.00 0.00 2.17
1826 2168 4.443725 CGAGCAGTCAAATATGTAGCTCAG 59.556 45.833 11.42 1.80 41.39 3.35
1835 2177 7.039011 TGGGAGTATAATCGAGCAGTCAAATAT 60.039 37.037 0.00 0.00 0.00 1.28
1853 2246 6.663093 TGTCATTTTTACAAGCATGGGAGTAT 59.337 34.615 0.00 0.00 0.00 2.12
1859 2252 3.609373 CGCTGTCATTTTTACAAGCATGG 59.391 43.478 0.00 0.00 0.00 3.66
1860 2253 4.229096 ACGCTGTCATTTTTACAAGCATG 58.771 39.130 0.00 0.00 0.00 4.06
1914 2319 2.352127 GCTCACCATTCTCCTTTGCAAC 60.352 50.000 0.00 0.00 0.00 4.17
1961 2366 2.106683 CCACCTAAAAGCCTCGCCG 61.107 63.158 0.00 0.00 0.00 6.46
1964 2369 2.106683 CGGCCACCTAAAAGCCTCG 61.107 63.158 2.24 0.00 44.84 4.63
1966 2371 1.571773 ATCCGGCCACCTAAAAGCCT 61.572 55.000 2.24 0.00 44.84 4.58
2076 2519 4.486503 CAGAGCAGGAGGCCCAGC 62.487 72.222 0.00 0.00 46.50 4.85
2094 2537 1.305633 TGGACCTGGGAGAGCAGAG 60.306 63.158 0.00 0.00 0.00 3.35
2095 2538 1.305633 CTGGACCTGGGAGAGCAGA 60.306 63.158 0.00 0.00 0.00 4.26
2096 2539 2.365586 CCTGGACCTGGGAGAGCAG 61.366 68.421 9.57 0.00 0.00 4.24
2097 2540 2.284921 CCTGGACCTGGGAGAGCA 60.285 66.667 9.57 0.00 0.00 4.26
2098 2541 3.791586 GCCTGGACCTGGGAGAGC 61.792 72.222 18.38 0.53 0.00 4.09
2186 2631 0.748367 GCGGAGTTGGAGGGGAATTC 60.748 60.000 0.00 0.00 0.00 2.17
2213 2659 2.524148 GGGGGTTGCAACTTGGCT 60.524 61.111 27.64 0.00 34.04 4.75
2322 2868 1.518572 CGTGTGATACTCCGCCACC 60.519 63.158 0.00 0.00 0.00 4.61
2337 2883 1.291877 CTTCCTCTTTGACCCGCGTG 61.292 60.000 4.92 0.00 0.00 5.34
2339 2885 0.320421 TTCTTCCTCTTTGACCCGCG 60.320 55.000 0.00 0.00 0.00 6.46
2352 2898 0.180642 GGAACGGGATCCCTTCTTCC 59.819 60.000 28.42 26.44 33.05 3.46
2367 2913 3.358076 CTCTCGCTCCACCGGGAAC 62.358 68.421 6.32 0.00 44.38 3.62
2387 2933 4.070552 AGCCGAGACCTTGACCGC 62.071 66.667 0.00 0.00 0.00 5.68
2476 3041 1.009389 CACGCTCCTTCGTCAAGTCC 61.009 60.000 0.00 0.00 41.21 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.