>input_sequence_77443
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---ATGG---------CCTCCTCCACTTGTACCCGAGCCCAGCTGGCCGTCGCCCTCCTGGCCGTCGCGCTGTGCAATGC
GGCCCTCCTCGTCGTCGTC---GACGCCGGCTACCCCC------GCGGCGGGGACTACCGGGCGCAGTTCCTGTTCCAGC
AGAACGCGGCGCGGGCGGCGATGGGGCTGCCGGCGCTGAGGTGGGACGAGCGGGTGGCGGCGTACGCGCGGTCGTACGCC
GAGTCGCGGCGCGGGGACTGCGCGCTGGTGCACTCGTCGGGGCCATACGGGGAGAACCTCTTCTGGGGGAGCGGCACGGG
GTGGGCGCCGGCGCAGGCCGTCGGGGCGTGGCTGGCGGAGCGGCCCCGGTACGACTACTGGAGCAACCGCTGCAGCGGCG
GCATGTGCGGGCACTACACGCAGATCGTGTGGCGCGGCAGCACCCGCGTGGGCTGCGCCATGGTCGAGTGCTACGCCGGC
CGCGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGA--------------
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>chr6A_1_TraesCS6A01G345100
AGGCAGCCAATCTGACCTGTAAAGAGCGCCTTTTGGCGGGCTCGACAGTGTGCCGCTACATGGCATTCCCTGTTGACTGG
GGCATGGCCAATGCATAGCCACAGCGTGATGCCTCACATGCCATTTAGGATTGGATAATAAAAAAATATATGTTTGGATA
GGGAAGCGGGATCCTCTTCAAGAGACGGGTGCTTAGAGACAAAAAGTGTTGTCCGATTCATAAAGTTGAAAAAGTTGAAA
TGGGGAGAAGGAATGCATGTGTAGTGAGAGTCGCTTTTTATTCTTTGATGAAGTCCACTAGTAGTAGCTTGCACTGAGGA
GAAAAAAAATCAACACATGTGCTTTAAATTACTTTTTATCCCGAGACATCTGTATTCATATGCCACCATTGTACATTGCA
TGGCATGCCGATGCCACGATGCGCGCCTTTCGGCCTCTTTCTTTCTGAGCGACCACCCTGGCCAATTGAATGGCGTTCCG
TGATAAACACAGCTGGCCCACCATGCCATTTACCAGTGCCTACCATCATCCAGAGTTCCTGTGATACAGAGA--------
-----------ATTTGTGTAGATGCTCTA--------GTTAGGAACTTAACAGAAGCGAATGAACAGTTGAACTATATAT
TCAGAGACAAGATGTTACTAATTAGTACTCGGAAAAGGCGGGCCAAGGCACGTCTGATCATCGTGCTCAATGCACATCCT
CACCAGCCTACAACGAACGAACTAATCAGTTAGCAGCAATTTGATTCCAGTGGAG-----CACTAATAATTCAATAAGCA
CCGCCCGGAACAGAGCCGCT---GCTGCTAATTTGTTTCCGGTTGATTTTCATTTTAGGTAGACCTTCCTTCCAGTTCCA
GAGCGCGCAATCATGGCGGAACATGGCCTCGCCTCCCCAACGACGCATCTTAAAAATATTCTGACAAGATTTCCTGCCCT
GCCTC--------CAAGCCTCCATATATATCAACCAACCTCCCGTCCGTAAGCAGAGCAGAGCAGCAGCACCACCCACCT
CCAATGG---------CCTCCTCCACTTGTACCCGAGCCCAGCTGGCCGTCGCCCTCCTGGCCGTCGCGCTGTGCAATGC
GGCCCTCCTCGTCGTCGTC---GACGCCGGCTACCCCC------GCGGCGGGGACTACCGGGCGCAGTTCCTGTTCCAGC
AGAACGCGGCGCGGGCGGCGATGGGGCTGCCGGCGCTGAGGTGGGACGAGCGGGTGGCGGCGTACGCGCGGTCGTACGCC
GAGTCGCGGCGCGGGGACTGCGCGCTGGTGCACTCGTCGGGGCCATACGGGGAGAACCTCTTCTGGGGGAGCGGCACGGG
GTGGGCGCCGGCGCAGGCCGTCGGGGCGTGGCTGGCGGAGCGGCCCCGGTACGACTACTGGAGCAACCGCTGCAGCGGCG
GCATGTGCGGGCACTACACGCAGATCGTGTGGCGCGGCAGCACCCGCGTGGGCTGCGCCATGGTCGAGTGCTACGCCGGC
CGCGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGAACACCCATGACGGA
CCGGCCGCTGCGGCCGCCGTCGCGCCGCGTTGCCGCTCCGTCTCGCCGGCCTTCTTCG------CAGCCCCGTTGCCGGC
CGGCCAGCGCGTACGGGCGATGCGGCGCGGCGTAGTAATGTCTCGCTGTCCCATTCATTGTTGCCCATCGAGAGTTGAAG
ACGAATCGATGGCGATGCCACGAGTGTACAAAATATTTTTTTCACTGC--TATACTACTAGTGCTGCATTT----TATTT
ATCCTTGCCAGAATAT----------------------------------------------------------------
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--------------------------------------------ATATACTCCTGTTGTGGTTACGAAACAAAATCTGAA
ATGAATCCTGAGCTACATATTTGACTGCTC--------------------------------------------------
-GATTATACTCCCATGCTTGTAAAAATGACAGCGTTTTTCTCAAAA------------AGAAGAAGAAGAAGACAGCAGT
TGCAAAGGAGAATGGTGAGCTGCTGAGGCAAAAAAGTCCACTTTTCGGCGAGGCTTTTAGGTGGCCGGAT----TCCTTC
CTGCTCAGGAGCTGTAGAAGTGAGCTGTGTACGTGAGC-----ATGCATAGTCGAGGCGGGCTGGC----GCATGTGCCA
CCTTGCGA-------------------------CAGAGGCTGGGCCTCCTGCTCTGCTCTGCTCTCCCAGGTCCAGGCGT
GCGATGCGTCATGGGCAGGGGCAGCAGTTGGAATCCGATGCTGCGGTCCGGTGCGGCCCCGG--CTCCTTGAATTCCCCT
CC-AACTCCGCGGTGCCAAGCCAAGTTGCAACCCCCGCGCATTCATCTCG------------------------------
---------------------------------CTGTACATGCGCGTGACCGCTGCAAGCCTCGCCGGCGACCATGGGGT
CTCTCGGC-------------------------------------CGTCGAGTAGGAGCAGGCTGCTGGTGGCGGAGTAT
CACACGCGGGTCAAAGAGGAAGAAGGGATCCCGTTCCCGGTGGAGCGAGAGGGCGGTCAAGGTCTCGGCTGCGCTTGGGG
GGATCGAGGATGTTGCAGTGCAG-----GTCGTGTGGCAAATGTCAACAGAGGCGC--------------GGAGCGCTGC
GGACTTGACGAAGGAGCGTGCATGTGCTCGCCCGCTTGCAGTTGCAACT
>chr6D_399
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------------------------------------------------------------------------------CA
TGACGTGCCGATGCCACGATGCGCGTCTTTCTGCCTCTTTATGTCTGAACGACCACCCTGGCCAATTGAATGACATTCCG
TGATAAACACAGCTGTTCCATCATGCCAGTGTC----------------CCAGAGTTCGATCAACAAAATTTCTGAATCA
TCTCCAAAAGCATTTGTCTGCATGCTCTA--------GTTAGCAACTTAACTGAAGCGGATGAGCAATTTAACGGTGAAT
TCAGAGACAGGATGTCAAT------TACTTGGAAAAGACGGGCCAAGGCAGGTTTGATCAACGTGCTCAATGCACATTCT
GACCAGCCTACAACGAACGAACTAATCAGTTAGCAGCAATTTGATTCCAGTGGAGTGGAGCACTAATAATTCAATAAGCA
CCGCCCGGAAAAGAGCCGCTGCTGCTGCTAATTTGATTCCAGTTGATTTTCATTTTAGGTAGACCTTCCTTCCAGTTCCA
GAGCGCGCAATCATGGCGGAACATGGCCTCGCCTCCCCAACGACACATCTTAAAAATATTCTGACAAGATTTCTTGCCCT
CCCTCCCTCCCTCCAAGCCTCCATATATATCAACCAACCTCCCGTCCGTAAGCAGAGCAG---AGCAGCACCACCCACCT
CCAATGGCCCCCTCCTCCTCCTCCACTTGTACCCGAGCCCAGCTGGCCATCGCCCTCATCGCCGCCGCGCTGTGCAATGC
GGCCCTCCTCGTCGTGGTC---GACGCCGGCTACCCCC------GCGGCGGGGACTACCGGGCGCAGTTCCTGTTCCAGC
AGAACGCGGCGCGGGCGGCGATGGGGCTGCCGGCGCTGAGGTGGGACGAGCGGGTGGCGGCGTACGCGCGGTCGTACGCC
GAGTCGCGGCGCGGGGACTGCGCGCTGGTGCACTCGTCCGGGCCCTACGGCGAGAACCTCTTCTGGGGCAGCGGCACGGG
CTGGGCGCCGGCGCAGGCCGTGGGGGCGTGGCTGGCGGAGCGGCCCCGGTACGACTACTGGAGCAACCGCTGCAGCGGCG
GCATGTGCGGGCACTACACGCAGATCGTGTGGCGCGGCAGCACCCGCGTGGGGTGCGCCATGGTCGAGTGCTACGCCGGC
CGCGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCATACTGAATACCGATGG----
CCGGCCGGTGCAGCCGCCGTCGC---ACGTTGCCGCTCCGCCTCGCCGGTCTTCTTCACATTCACAGCCCCGTTGCCGGC
CGGCCAGCGCGTGC-GGCGATGCGGCGCGGCGTAGCACTATCTTGCTGTCCCATTCATTGTTGCTCATCGAGAGTTCAAG
ACGAATCGATGGCGATGCCACGAGTGTACAAAATATTTTTT--ACTGC--TATACTACTGGTACTGCATTCTAAGTATTT
ATCCTTGCCAAA--AT----------------------------------------------------------------
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--------------------------------------------ATATACTCCCGTTGTGGTTACGAAACATAATCTGAA
ATGAATCGTGAGCTACGTATTTGACTGCTCTGTCTCAAATAAAAAAAAGGCATTCCTCCCTTTGCTC----TTGGCGTCT
CGATTGTACTCGTATGCTTGTAAAAATGACAACATTGTTCTCAAAC------------AGAAGAAGAAGAAGACAGCA--
---------------TGAGCTGCTGAGGCAAAAAAGTCCACTTTTTGGGGTGGCTTTTAGGTGGCTGGATGGATTCCTTC
CTGCTGAGGAGCTGTAGAAGTGAGCTGTGTACGTGAGCATGCAATGCATAGTCGAGGCTGGCTGGCTAGCGCATGTGCCA
CCTTGCGAGGATGGATTGGAGGGCGACGGTCGACAGAGCCTGGGCCTCCTGCTCTG-----CTCTCCCAGGTCCAGGCGT
GCGATGCGTCATGGGCAGGGGCAGCAGTTGGAATCCGATGCTGCGGTCCGGTGCGGCCCCGCGCCTCCTTCAATTCCCCT
CC-AACTCCGCGGTGCCACGCCAAGTTGCAACCCCCGCGCATTCATCTCG------------------------------
---------------------------------CTGTACATGCGCGTGACCGCTGCAACCCTCGCCGGCGACCACGGAGT
CTCTCGGCCGGCC----GGCCGGCGCCACGGCGTGTGCGGGCCTCCGTCGAGTCGGAGCCGGCTGCTAGTGGCGGAGTAT
CATATGCGGGTCAAAGACGGAGGGATCCCA---TTCCCGGAGGAGCGAGAGGACGGTCAAGGTCTCGGCTGGGGCT-TGG
GGATCGAGGATGTTGCAGTGCAGTGCAGGTCGTGTGGCAAATGTCAACAAAGGCGCAGCGTGCGTTGGGTAGAGCGCTGC
AGACTTGACAAAGGAGTGTGCATGTGCTCGCGCGCTTGCAATTGCAA--
>chr6B_399
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------------------------------------------------------------------------------CA
TGACGTGCCGATGCCACGATGCGCGCCTTTCTGCCTCTTTCTGTCTGAGCGACCACCCTCGCCAATTGAATGGCACTCCG
TGATGAACACAGCTGTTCCATCATGCCATTTACCAGTGCCTACCATTATCTAGAGAATT----------TTTCTGAATAA
TCTCCAAAATCATTTGTGTACATGCTCTAGTGCTCTAGTTAGCAAATTAACCGAAGCGGATGAACAGTTGAACTATTAAT
TCAGAGACAAGATGCC---AATTACTACTTGGAAACGACGGGCCAAGGCACGTCTGATCAACGTGCTCAATGCGCACTCT
GACCAGCCTACAACGAACGAGCTAATCAATCAGTAGCAATTTGATTCCAAATC---GGAGCACTAATAATTCAGTAAGCA
CCGCCCGGAACAGAGCA---GCTGCTGCTAATTTGATTCCAGTTGATTTTCATTTTAGGTAGACCTTCCTTCCAGTTCCA
GAGCGCGCAATCATGGCGGAACATGGCCTCGCCTCCCCAACGACACATCTTAAAAATATTCTGACAAGATTTCCTGCCCT
CCCTC--------CGAGCCTCCATATAT----ACCAACCTCCCGTCCGTAAGCAGAGCAG-----CATCACCACCCACCT
CCCATGG---------CCTCCTCCACTTGTACTCGAGCCCAGCTGGCCATCGCCCTCCTCGCCGTCGCGCTGTGCAATGC
GGCGTTCCTCGTCGTCGTGGTGGACGCCGGCTACCCCCGCGGCGGCGGCGGGGACTACAGGGCGCAGTTCCTGTTCCAGC
AGAACGCGGCGCGGGCGGCGATGGGGCTGCCGGCGCTGAGGTGGGACGAGCGGGTGGCGGCGTACGCGCGGTCGTACGCC
GAGTCGCGGCGCGGGGACTGCGCGCTGGTGCACTCGTCGGGGCCCTACGGCGAGAACCTCTTCTGGGGCAGCGGCACCGG
CTGGGCGCCCGCGCAGGCCGTGGGGGCGTGGCTGGCGGAGCGGCCCCGGTACGACTACTGGAGCAACCGCTGCAGCGGCG
GCATGTGCGGGCACTACACGCAGATCGTGTGGCGCGGCAGCACCCGCGTGGGGTGCGCCATGGTCGAGTGCTACGGCGGC
CGCGGCACCTTCATCACCTGCAACTACGACCCGCCCGGCAACTACGTCGGCATGCGCCCCTACTGAATACTGATGGC---
----------CGGCCGCCGTCGC---GCGTTGCCGCTCCGCCTCGCCGGTCTTCG------TCGCAGCTCCGTTGCCGGC
CGGCCAGCGCGGAC-GGCGATGCGGCGCGGCGTAGCACTATCTTGATGTCCCATTGATTGTTGCTCATCGAGAGTTCAAG
ACAAATCGATGGCGATGCCACGAGTGTACAAAGTATTTTTT--ACTGCTATATACTACTGGTGCTGCATAT----TATTT
ATAGAGGGTGTTTGTTTTCAGGAACTTATTGACTTATAGACTTAAAAATGTCCCTATAAGTCTCATCTAAACCAAACAGG
ATGGATTTATAGGGACTTAATGTGCGCATTTGGGATTTATGGAATAAGACTTTCAAGGAGGGACTTATAGGGACTTATAG
TTGTAATATGGTCTTAAAGGGACTTATAAGTCCTAGAAACCAAACGGGTAGGGGCTTTTTAAAGACTTGGGACTTATAAT
TTGAGACTACAAAAAATCCTAGGAGTTATGAACCAAACAGGGCCATATACTCCTGTTGTGGTTACAAAACATAATGTGAA
ATGAATCGTGAGCTATGTATTTGGCTGCTCTG--TCAAATAAATAAAAGGCATTCCTCCCTTTTTCGCTTATTGGCGTCT
CGATTGTACTCGTATGCTTGTAAAAATGACAGCATTTTTCTCAAAAAAAAAACAAAAGAGAAAGAGAAGAAGACAGCATT
TGCAAAGGAGAATGGTGAGCTGCTCACCCAAAAAGTCT-----------GTGGCTTTTAGGTGGCTGGAT--------TC
CTGCTCAGGAGCTGTAGAAGTGAGCTGTGTACGTGAGCG-----TGCATAGTCGAGGCTGGCTGGC----GCATGTGCCA
CCTTGCGAGGATGGATTGGAGGGCGACGGTCGACACAGCCTGGGCCTCCTGCTCTG-----CCCTCCCAGGTCCAGGCGT
GCGATGCGTCATGGGCAGGGGCAGCAGTTGGAATCCGATGCTGTGCC---GTGCGGCCCCGG--CTCCTTCAATTCCCCT
CCCAACTCCGCGGTGCCACGCCAAGTTGCGACCCGAGCGCATTCATCGCGCCATGGCAGGCTAGCAGCTAGACGTGCCCG
TGCACGCCCCGCGTGTCCAGTTGTGCAGCAGACCTGTACATGCGCGTGACCGCTGCAAGCCTCGCCGGCGGCCACGGAGT
TTCTCGGCAGGCCGGCCGGCCGGCGCCACGGCGTATGCGGGTCTCCGTCGAGTCGGAGCCGGCTGCTAGTGGCGGAGTAT
CATATGCGGGTCAAAGATGATGGGATCCTA---TTCCCGGTGGAGCGAGAGGACGGTCAAGGTCTCGGCTGCGCTT-GGG
GGATCGAGGATGTTGCAG----------GTCGTGTGGCAAATGTCAACAAAGGCGCAGCGTGCGTTGGGTGGAGCGCTGC
CGACTTGACGAAGGAGCGTGCATGTGCTCGCGCGCTTGCA---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--S-S--------------------------S----------S-------------------------------S-----
---------------SS---S-------------------------S-----------SSSSS-S-S-SSSS--------
--------------------S---------------------S--------S------S-----------------SS--
---------------S-S------S----S-------S----------------------S----------------S--
S-------------------------------------------------------------------------------
-----------------------------------S----S---------------------------------------
--------------------------------------------S-----------------------------------
S-----------------------------------------------------------SSS-----------------
------------------------------------------------S----------S--------------------
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--------------------------------------------S-----S-----------------S-----------
S--------------------S----------------------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------------------------------S---S---S-SSS
-------S---------------SSS--------------S--------S-------S----------------------
--------------S--------------------S-S-S---S--------------------S-----------S---
-----------------------------------------SS----------------S--------------------
----------S-SS------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
-------S--------S---------------------------------------------------------------
-----S-----SS--------------------S--------------------------------------------S-
---------------------------------------------S--S-S--------------S--------------
----------------------------------------------------------S---------------------
--------------------------------------S-----------------SSSSS-------------------
----------------------------------------------------------------------S---------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------S--S--
-----------------------------------------------------S-----S-------S------------
--S-S------------S----SSSSSS-SSSS-------------------S-----------------------S---
-------------------------------------------------S------------------------------
S------------------------------S--------S------SS
>forward_110
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----------ATGCATAGCCACAGCGTGAT--------------------------------------------------
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>reverse_1331
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--------------------------------------------------GGAGAACCTCTTCTGGGGGA----------
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>forward_170
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----------------------------------------------------------------------TGTTTGGATA
GGGAAGCGGG----------------------------------------------------------------------
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>reverse_2537
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--------------------------------------------------------CTCTGCTCTCCCAGGTCCA-----
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