Multiple sequence alignment - TraesCS6A01G337500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G337500 chr6A 100.000 2546 0 0 1 2546 571652112 571649567 0.000000e+00 4702
1 TraesCS6A01G337500 chr6B 96.213 977 31 2 704 1674 642385173 642384197 0.000000e+00 1594
2 TraesCS6A01G337500 chr6B 87.133 715 53 13 1666 2379 642383361 642382685 0.000000e+00 774
3 TraesCS6A01G337500 chr6B 90.476 399 26 8 4 402 642385691 642385305 1.350000e-142 516
4 TraesCS6A01G337500 chr6B 85.753 365 50 2 2012 2375 261696743 261696380 3.970000e-103 385
5 TraesCS6A01G337500 chr6B 84.658 365 54 2 2012 2375 391081182 391080819 1.860000e-96 363
6 TraesCS6A01G337500 chr6D 91.674 1093 52 9 1286 2375 426893132 426892076 0.000000e+00 1478
7 TraesCS6A01G337500 chr6D 98.658 298 4 0 990 1287 426893511 426893214 1.730000e-146 529
8 TraesCS6A01G337500 chr6D 96.246 293 11 0 706 998 426895462 426895170 4.930000e-132 481
9 TraesCS6A01G337500 chr6D 91.341 358 20 3 1 357 426923225 426922878 1.770000e-131 479
10 TraesCS6A01G337500 chr3B 93.377 302 20 0 400 701 449806848 449806547 5.000000e-122 448
11 TraesCS6A01G337500 chr3B 92.258 310 23 1 400 709 191186549 191186857 3.010000e-119 438
12 TraesCS6A01G337500 chr3B 84.932 365 53 2 2012 2375 434724868 434725231 4.000000e-98 368
13 TraesCS6A01G337500 chr3B 84.658 365 54 2 2012 2375 818931975 818932338 1.860000e-96 363
14 TraesCS6A01G337500 chr3B 85.465 172 19 6 231 399 94704008 94703840 9.360000e-40 174
15 TraesCS6A01G337500 chr3B 85.465 172 20 4 233 402 151402990 151402822 9.360000e-40 174
16 TraesCS6A01G337500 chr7B 92.810 306 22 0 400 705 728122711 728122406 6.460000e-121 444
17 TraesCS6A01G337500 chr7B 85.205 365 52 2 2012 2375 192778292 192778655 8.600000e-100 374
18 TraesCS6A01G337500 chr7B 84.890 364 53 2 2012 2374 512148946 512149308 1.440000e-97 366
19 TraesCS6A01G337500 chr4B 93.092 304 20 1 398 701 45199563 45199865 6.460000e-121 444
20 TraesCS6A01G337500 chr2A 93.046 302 21 0 400 701 7915767 7915466 2.320000e-120 442
21 TraesCS6A01G337500 chr2A 92.233 309 24 0 397 705 51641250 51641558 3.010000e-119 438
22 TraesCS6A01G337500 chr1B 93.046 302 21 0 400 701 683992174 683991873 2.320000e-120 442
23 TraesCS6A01G337500 chr1B 86.782 174 19 4 230 402 388006056 388006226 9.300000e-45 191
24 TraesCS6A01G337500 chr5A 92.233 309 24 0 393 701 569789256 569789564 3.010000e-119 438
25 TraesCS6A01G337500 chr5B 92.715 302 22 0 400 701 8364309 8364008 1.080000e-118 436
26 TraesCS6A01G337500 chr1D 85.135 370 52 3 2012 2379 204216286 204216654 2.390000e-100 375
27 TraesCS6A01G337500 chr1D 85.714 175 20 4 230 402 7339906 7339735 2.010000e-41 180
28 TraesCS6A01G337500 chr1D 84.270 178 17 7 230 402 285439278 285439449 2.030000e-36 163
29 TraesCS6A01G337500 chr1D 78.378 259 40 6 1682 1937 204144392 204144637 1.220000e-33 154
30 TraesCS6A01G337500 chr1A 84.932 365 53 2 2012 2375 12678771 12679134 4.000000e-98 368
31 TraesCS6A01G337500 chr4A 84.658 365 54 2 2012 2375 717457251 717456888 1.860000e-96 363
32 TraesCS6A01G337500 chr3D 76.909 537 90 24 1167 1678 436180070 436179543 8.970000e-70 274
33 TraesCS6A01G337500 chr3D 88.608 158 15 3 233 389 100768755 100768600 3.340000e-44 189
34 TraesCS6A01G337500 chr2B 86.782 174 20 3 230 402 135084293 135084122 9.300000e-45 191
35 TraesCS6A01G337500 chr2D 85.629 167 17 5 224 389 354623950 354624110 4.360000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G337500 chr6A 571649567 571652112 2545 True 4702.000000 4702 100.000 1 2546 1 chr6A.!!$R1 2545
1 TraesCS6A01G337500 chr6B 642382685 642385691 3006 True 961.333333 1594 91.274 4 2379 3 chr6B.!!$R3 2375
2 TraesCS6A01G337500 chr6D 426892076 426895462 3386 True 829.333333 1478 95.526 706 2375 3 chr6D.!!$R2 1669
3 TraesCS6A01G337500 chr3D 436179543 436180070 527 True 274.000000 274 76.909 1167 1678 1 chr3D.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.036765 TCACCCCTATGAACGCACAC 60.037 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 4413 0.036732 TGGAAGGCAATGCGACTCTT 59.963 50.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.616956 ACGAAGAAGCCAAGATGATGA 57.383 42.857 0.00 0.00 0.00 2.92
91 92 1.465200 GCACCGGGATAGGGTCTCTC 61.465 65.000 6.32 0.00 34.97 3.20
99 100 1.606668 GATAGGGTCTCTCGAGCACAG 59.393 57.143 7.81 0.00 39.38 3.66
132 133 3.655777 AGGACTACTTTGATCCCAAACCA 59.344 43.478 0.00 0.00 37.36 3.67
162 163 1.069500 GGTGAATGGTTTCGTCAACGG 60.069 52.381 2.31 0.00 40.29 4.44
173 174 1.066787 TCGTCAACGGTTCCATATGCA 60.067 47.619 2.31 0.00 40.29 3.96
181 182 2.355756 CGGTTCCATATGCAGAAACCAG 59.644 50.000 19.11 12.22 0.00 4.00
192 193 0.663153 AGAAACCAGTGTTCTTGCGC 59.337 50.000 0.00 0.00 32.15 6.09
195 196 4.724697 CCAGTGTTCTTGCGCGCG 62.725 66.667 28.44 28.44 0.00 6.86
197 198 3.702555 AGTGTTCTTGCGCGCGTC 61.703 61.111 32.35 23.18 0.00 5.19
198 199 3.995669 GTGTTCTTGCGCGCGTCA 61.996 61.111 32.35 25.55 0.00 4.35
222 223 1.153086 GGAGTGGAGGCGCATGATT 60.153 57.895 10.83 0.00 0.00 2.57
223 224 0.106708 GGAGTGGAGGCGCATGATTA 59.893 55.000 10.83 0.00 0.00 1.75
224 225 1.475034 GGAGTGGAGGCGCATGATTAA 60.475 52.381 10.83 0.00 0.00 1.40
225 226 2.498167 GAGTGGAGGCGCATGATTAAT 58.502 47.619 10.83 0.00 0.00 1.40
226 227 2.880890 GAGTGGAGGCGCATGATTAATT 59.119 45.455 10.83 0.00 0.00 1.40
228 229 2.030805 GTGGAGGCGCATGATTAATTCC 60.031 50.000 10.83 0.00 0.00 3.01
229 230 1.541588 GGAGGCGCATGATTAATTCCC 59.458 52.381 10.83 0.00 0.00 3.97
230 231 2.508526 GAGGCGCATGATTAATTCCCT 58.491 47.619 10.83 0.00 0.00 4.20
231 232 2.227388 GAGGCGCATGATTAATTCCCTG 59.773 50.000 10.83 0.00 0.00 4.45
232 233 1.336240 GGCGCATGATTAATTCCCTGC 60.336 52.381 10.83 0.00 0.00 4.85
234 235 2.606308 GCGCATGATTAATTCCCTGCAG 60.606 50.000 6.78 6.78 33.70 4.41
236 237 3.504906 CGCATGATTAATTCCCTGCAGAT 59.495 43.478 17.39 0.00 33.70 2.90
237 238 4.615223 CGCATGATTAATTCCCTGCAGATG 60.615 45.833 17.39 7.80 33.70 2.90
238 239 4.806330 CATGATTAATTCCCTGCAGATGC 58.194 43.478 17.39 0.00 42.50 3.91
251 252 3.523142 GCAGATGCATCAGAATCTTCG 57.477 47.619 27.81 6.18 38.12 3.79
256 257 5.346551 CAGATGCATCAGAATCTTCGAGATC 59.653 44.000 27.81 0.00 38.12 2.75
277 278 5.333299 TCATTAGGTACACGCACAACTAT 57.667 39.130 0.00 0.00 0.00 2.12
279 280 5.808540 TCATTAGGTACACGCACAACTATTC 59.191 40.000 0.00 0.00 0.00 1.75
292 293 5.409520 GCACAACTATTCAGTGATCTTGTGA 59.590 40.000 23.53 5.73 39.36 3.58
317 318 4.563404 GTGGACCCACAACGGAAA 57.437 55.556 13.92 0.00 45.53 3.13
335 336 6.386654 ACGGAAACCAAATAGCTAATGTTTG 58.613 36.000 14.23 12.33 39.13 2.93
389 390 8.373048 TCGAACATATATTTTTCGCTACCAAT 57.627 30.769 16.47 0.00 41.48 3.16
424 425 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
425 426 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
426 427 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
427 428 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
428 429 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
429 430 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
430 431 0.663269 TCAGTACAGACACAAGCGCG 60.663 55.000 0.00 0.00 0.00 6.86
431 432 2.022129 AGTACAGACACAAGCGCGC 61.022 57.895 26.66 26.66 0.00 6.86
436 437 1.208259 CAGACACAAGCGCGCATATA 58.792 50.000 35.10 0.00 0.00 0.86
446 447 1.056869 CGCGCATATACACGTGCATA 58.943 50.000 17.22 13.68 41.32 3.14
447 448 1.201661 CGCGCATATACACGTGCATAC 60.202 52.381 17.22 0.85 41.32 2.39
448 449 1.790043 GCGCATATACACGTGCATACA 59.210 47.619 17.22 0.00 41.32 2.29
449 450 2.409752 GCGCATATACACGTGCATACAC 60.410 50.000 17.22 7.56 41.32 2.90
450 451 3.049912 CGCATATACACGTGCATACACT 58.950 45.455 17.22 0.00 45.10 3.55
451 452 3.119628 CGCATATACACGTGCATACACTC 59.880 47.826 17.22 2.42 45.10 3.51
452 453 4.048504 GCATATACACGTGCATACACTCA 58.951 43.478 17.22 0.00 45.10 3.41
453 454 4.085055 GCATATACACGTGCATACACTCAC 60.085 45.833 17.22 0.00 45.10 3.51
454 455 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
455 456 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
457 458 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
458 459 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
459 460 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
462 463 3.111484 TGCATACACTCACCCCTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
463 464 3.118408 TGCATACACTCACCCCTATGAAC 60.118 47.826 0.00 0.00 0.00 3.18
464 465 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
465 466 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
466 467 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
467 468 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
468 469 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
469 470 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
470 471 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
471 472 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
472 473 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
473 474 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
474 475 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
475 476 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
477 478 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
478 479 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
481 482 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
482 483 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
483 484 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
484 485 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
485 486 2.525877 ACACGCACACCCTACCCT 60.526 61.111 0.00 0.00 0.00 4.34
487 488 0.832983 ACACGCACACCCTACCCTTA 60.833 55.000 0.00 0.00 0.00 2.69
488 489 0.539986 CACGCACACCCTACCCTTAT 59.460 55.000 0.00 0.00 0.00 1.73
489 490 0.539986 ACGCACACCCTACCCTTATG 59.460 55.000 0.00 0.00 0.00 1.90
491 492 1.202533 CGCACACCCTACCCTTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
492 493 1.475213 GCACACCCTACCCTTATGAGC 60.475 57.143 0.00 0.00 0.00 4.26
493 494 1.837439 CACACCCTACCCTTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
494 495 1.838077 ACACCCTACCCTTATGAGCAC 59.162 52.381 0.00 0.00 0.00 4.40
495 496 1.141053 CACCCTACCCTTATGAGCACC 59.859 57.143 0.00 0.00 0.00 5.01
496 497 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
497 498 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
498 499 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
499 500 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
500 501 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
501 502 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
502 503 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
503 504 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
504 505 2.168521 CCTTATGAGCACCTCCGAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
505 506 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
506 507 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
508 509 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
509 510 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
510 511 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
511 512 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
512 513 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
513 514 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
514 515 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
515 516 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
516 517 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
517 518 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
518 519 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
521 522 1.109920 AGACTGAGCCGGCATATCGT 61.110 55.000 31.54 18.45 0.00 3.73
522 523 0.664767 GACTGAGCCGGCATATCGTC 60.665 60.000 31.54 22.06 0.00 4.20
524 525 0.881796 CTGAGCCGGCATATCGTCTA 59.118 55.000 31.54 6.18 0.00 2.59
525 526 0.881796 TGAGCCGGCATATCGTCTAG 59.118 55.000 31.54 0.00 0.00 2.43
526 527 1.166129 GAGCCGGCATATCGTCTAGA 58.834 55.000 31.54 0.00 0.00 2.43
527 528 1.540267 GAGCCGGCATATCGTCTAGAA 59.460 52.381 31.54 0.00 0.00 2.10
528 529 1.961394 AGCCGGCATATCGTCTAGAAA 59.039 47.619 31.54 0.00 0.00 2.52
530 531 3.006967 AGCCGGCATATCGTCTAGAAATT 59.993 43.478 31.54 0.00 0.00 1.82
531 532 3.746492 GCCGGCATATCGTCTAGAAATTT 59.254 43.478 24.80 0.00 0.00 1.82
532 533 4.927425 GCCGGCATATCGTCTAGAAATTTA 59.073 41.667 24.80 0.00 0.00 1.40
533 534 5.163982 GCCGGCATATCGTCTAGAAATTTAC 60.164 44.000 24.80 0.00 0.00 2.01
534 535 5.060569 CCGGCATATCGTCTAGAAATTTACG 59.939 44.000 5.11 5.11 36.71 3.18
535 536 5.854866 CGGCATATCGTCTAGAAATTTACGA 59.145 40.000 14.35 14.35 46.98 3.43
536 537 6.361481 CGGCATATCGTCTAGAAATTTACGAA 59.639 38.462 15.58 7.79 46.18 3.85
537 538 7.409449 CGGCATATCGTCTAGAAATTTACGAAG 60.409 40.741 15.58 10.75 46.18 3.79
538 539 7.381678 GGCATATCGTCTAGAAATTTACGAAGT 59.618 37.037 15.58 5.59 46.18 3.01
540 541 9.447040 CATATCGTCTAGAAATTTACGAAGTCA 57.553 33.333 15.58 4.97 46.18 3.41
542 543 6.088824 TCGTCTAGAAATTTACGAAGTCACC 58.911 40.000 10.62 0.00 43.93 4.02
545 546 7.023575 GTCTAGAAATTTACGAAGTCACCGTA 58.976 38.462 0.00 0.00 43.93 4.02
558 559 2.654877 CCGTAGGCACCTCGTTGT 59.345 61.111 0.00 0.00 46.14 3.32
559 560 1.445582 CCGTAGGCACCTCGTTGTC 60.446 63.158 0.00 0.00 46.14 3.18
560 561 1.800315 CGTAGGCACCTCGTTGTCG 60.800 63.158 0.00 0.00 38.55 4.35
561 562 1.582968 GTAGGCACCTCGTTGTCGA 59.417 57.895 0.00 0.00 44.12 4.20
562 563 0.731855 GTAGGCACCTCGTTGTCGAC 60.732 60.000 9.11 9.11 41.35 4.20
581 582 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
582 583 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
583 584 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
584 585 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
585 586 1.645710 AACGTCTCCTCCCACTGAAT 58.354 50.000 0.00 0.00 0.00 2.57
586 587 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
587 588 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
588 589 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
589 590 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
590 591 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
591 592 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
592 593 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
593 594 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
604 605 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
605 606 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
606 607 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
607 608 0.732571 GCATCGCCGGAAATTCTGAA 59.267 50.000 5.05 0.00 0.00 3.02
608 609 1.132262 GCATCGCCGGAAATTCTGAAA 59.868 47.619 5.05 0.00 0.00 2.69
609 610 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
610 611 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
611 612 4.497340 GCATCGCCGGAAATTCTGAAATAA 60.497 41.667 5.05 0.00 0.00 1.40
612 613 5.577835 CATCGCCGGAAATTCTGAAATAAA 58.422 37.500 5.05 0.00 0.00 1.40
613 614 5.828299 TCGCCGGAAATTCTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
614 615 6.202516 TCGCCGGAAATTCTGAAATAAATT 57.797 33.333 5.05 0.00 0.00 1.82
615 616 6.262601 TCGCCGGAAATTCTGAAATAAATTC 58.737 36.000 5.05 0.00 38.60 2.17
616 617 6.033341 CGCCGGAAATTCTGAAATAAATTCA 58.967 36.000 5.05 0.00 45.71 2.57
617 618 6.697019 CGCCGGAAATTCTGAAATAAATTCAT 59.303 34.615 5.05 0.00 46.62 2.57
618 619 7.306167 CGCCGGAAATTCTGAAATAAATTCATG 60.306 37.037 5.05 0.00 46.62 3.07
619 620 7.706179 GCCGGAAATTCTGAAATAAATTCATGA 59.294 33.333 5.05 0.00 46.62 3.07
620 621 9.585099 CCGGAAATTCTGAAATAAATTCATGAA 57.415 29.630 11.26 11.26 46.62 2.57
631 632 9.999883 GAAATAAATTCATGAATAAATGCGAGC 57.000 29.630 21.00 3.01 37.99 5.03
632 633 9.531942 AAATAAATTCATGAATAAATGCGAGCA 57.468 25.926 21.00 0.00 0.00 4.26
633 634 9.701098 AATAAATTCATGAATAAATGCGAGCAT 57.299 25.926 21.00 4.52 38.46 3.79
634 635 7.633361 AAATTCATGAATAAATGCGAGCATC 57.367 32.000 21.00 0.00 35.31 3.91
635 636 5.754543 TTCATGAATAAATGCGAGCATCA 57.245 34.783 11.26 5.94 35.31 3.07
636 637 5.754543 TCATGAATAAATGCGAGCATCAA 57.245 34.783 11.26 3.11 35.31 2.57
637 638 5.754778 TCATGAATAAATGCGAGCATCAAG 58.245 37.500 11.26 3.14 35.31 3.02
638 639 5.528320 TCATGAATAAATGCGAGCATCAAGA 59.472 36.000 11.26 5.40 35.31 3.02
639 640 6.206048 TCATGAATAAATGCGAGCATCAAGAT 59.794 34.615 11.26 0.39 35.31 2.40
640 641 6.381481 TGAATAAATGCGAGCATCAAGATT 57.619 33.333 11.26 8.31 35.31 2.40
641 642 6.798482 TGAATAAATGCGAGCATCAAGATTT 58.202 32.000 11.26 4.40 35.31 2.17
642 643 6.914215 TGAATAAATGCGAGCATCAAGATTTC 59.086 34.615 11.26 9.22 35.31 2.17
643 644 4.707030 AAATGCGAGCATCAAGATTTCA 57.293 36.364 11.26 0.00 35.31 2.69
644 645 4.707030 AATGCGAGCATCAAGATTTCAA 57.293 36.364 11.26 0.00 35.31 2.69
645 646 3.476295 TGCGAGCATCAAGATTTCAAC 57.524 42.857 0.00 0.00 33.17 3.18
646 647 3.076621 TGCGAGCATCAAGATTTCAACT 58.923 40.909 0.00 0.00 33.17 3.16
647 648 3.125829 TGCGAGCATCAAGATTTCAACTC 59.874 43.478 0.00 0.00 33.17 3.01
648 649 3.373439 GCGAGCATCAAGATTTCAACTCT 59.627 43.478 0.00 0.00 33.17 3.24
649 650 4.568359 GCGAGCATCAAGATTTCAACTCTA 59.432 41.667 0.00 0.00 33.17 2.43
650 651 5.276773 GCGAGCATCAAGATTTCAACTCTAG 60.277 44.000 0.00 0.00 33.17 2.43
651 652 5.809562 CGAGCATCAAGATTTCAACTCTAGT 59.190 40.000 0.00 0.00 33.17 2.57
652 653 6.237781 CGAGCATCAAGATTTCAACTCTAGTG 60.238 42.308 0.00 0.00 33.17 2.74
653 654 5.879223 AGCATCAAGATTTCAACTCTAGTGG 59.121 40.000 0.00 0.00 0.00 4.00
654 655 5.065731 GCATCAAGATTTCAACTCTAGTGGG 59.934 44.000 0.00 0.00 0.00 4.61
655 656 4.579869 TCAAGATTTCAACTCTAGTGGGC 58.420 43.478 0.00 0.00 0.00 5.36
656 657 4.287067 TCAAGATTTCAACTCTAGTGGGCT 59.713 41.667 0.00 0.00 0.00 5.19
657 658 5.483937 TCAAGATTTCAACTCTAGTGGGCTA 59.516 40.000 0.00 0.00 0.00 3.93
658 659 5.606348 AGATTTCAACTCTAGTGGGCTAG 57.394 43.478 0.00 0.00 44.60 3.42
659 660 4.407296 AGATTTCAACTCTAGTGGGCTAGG 59.593 45.833 0.00 0.00 43.68 3.02
661 662 1.644337 TCAACTCTAGTGGGCTAGGGA 59.356 52.381 8.35 0.00 46.33 4.20
662 663 2.247635 TCAACTCTAGTGGGCTAGGGAT 59.752 50.000 8.35 0.00 46.33 3.85
663 664 3.465966 TCAACTCTAGTGGGCTAGGGATA 59.534 47.826 8.35 0.00 46.33 2.59
664 665 3.529216 ACTCTAGTGGGCTAGGGATAC 57.471 52.381 8.35 0.00 46.33 2.24
676 677 4.401657 GGATACCACAGCCCCTCT 57.598 61.111 0.00 0.00 0.00 3.69
677 678 3.552594 GGATACCACAGCCCCTCTA 57.447 57.895 0.00 0.00 0.00 2.43
678 679 1.802553 GGATACCACAGCCCCTCTAA 58.197 55.000 0.00 0.00 0.00 2.10
679 680 1.416772 GGATACCACAGCCCCTCTAAC 59.583 57.143 0.00 0.00 0.00 2.34
680 681 1.416772 GATACCACAGCCCCTCTAACC 59.583 57.143 0.00 0.00 0.00 2.85
681 682 0.117541 TACCACAGCCCCTCTAACCA 59.882 55.000 0.00 0.00 0.00 3.67
682 683 0.550147 ACCACAGCCCCTCTAACCAT 60.550 55.000 0.00 0.00 0.00 3.55
683 684 0.181350 CCACAGCCCCTCTAACCATC 59.819 60.000 0.00 0.00 0.00 3.51
684 685 0.181350 CACAGCCCCTCTAACCATCC 59.819 60.000 0.00 0.00 0.00 3.51
685 686 0.253160 ACAGCCCCTCTAACCATCCA 60.253 55.000 0.00 0.00 0.00 3.41
686 687 0.918983 CAGCCCCTCTAACCATCCAA 59.081 55.000 0.00 0.00 0.00 3.53
687 688 0.919710 AGCCCCTCTAACCATCCAAC 59.080 55.000 0.00 0.00 0.00 3.77
688 689 0.106669 GCCCCTCTAACCATCCAACC 60.107 60.000 0.00 0.00 0.00 3.77
689 690 1.295020 CCCCTCTAACCATCCAACCA 58.705 55.000 0.00 0.00 0.00 3.67
690 691 1.064685 CCCCTCTAACCATCCAACCAC 60.065 57.143 0.00 0.00 0.00 4.16
691 692 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
692 693 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
693 694 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
694 695 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
710 711 3.813166 CACAGGTTGGTTCACGTTTCTAT 59.187 43.478 0.00 0.00 0.00 1.98
741 742 0.655733 GTGCCGGATTTGGTGTATCG 59.344 55.000 5.05 0.00 0.00 2.92
815 816 8.935844 ACCATATCACACAAATATATGTTAGCG 58.064 33.333 0.00 0.00 33.58 4.26
818 819 5.676552 TCACACAAATATATGTTAGCGGGT 58.323 37.500 0.00 0.00 0.00 5.28
1016 2684 2.369860 TCTCCATGGCCAACTATAGCAG 59.630 50.000 10.96 0.00 0.00 4.24
1062 2730 5.301551 ACTCTCGATGCTTCTTCTCATATGT 59.698 40.000 1.90 0.00 0.00 2.29
1354 3116 5.392811 GGCAGAATCTTGGAAGACATGAAAG 60.393 44.000 0.00 0.00 37.98 2.62
1584 3352 0.758123 TGATGCCGGATGTGCTCATA 59.242 50.000 5.05 0.00 34.06 2.15
1758 4374 2.109181 GCCGTGGGCTACATCCTC 59.891 66.667 0.88 0.00 46.69 3.71
1760 4376 1.972660 GCCGTGGGCTACATCCTCTT 61.973 60.000 0.88 0.00 46.69 2.85
1761 4377 0.541863 CCGTGGGCTACATCCTCTTT 59.458 55.000 0.88 0.00 0.00 2.52
1762 4378 1.473434 CCGTGGGCTACATCCTCTTTC 60.473 57.143 0.88 0.00 0.00 2.62
1763 4379 1.473434 CGTGGGCTACATCCTCTTTCC 60.473 57.143 0.88 0.00 0.00 3.13
1764 4380 1.840635 GTGGGCTACATCCTCTTTCCT 59.159 52.381 0.00 0.00 0.00 3.36
1772 4388 7.180408 GGGCTACATCCTCTTTCCTTATATACA 59.820 40.741 0.00 0.00 0.00 2.29
1797 4413 4.513692 GCGTGTATGCACCCAATCTAATTA 59.486 41.667 8.45 0.00 42.39 1.40
1803 4419 7.715249 TGTATGCACCCAATCTAATTAAGAGTC 59.285 37.037 0.00 0.00 37.74 3.36
1816 4432 0.036732 AAGAGTCGCATTGCCTTCCA 59.963 50.000 2.41 0.00 0.00 3.53
1835 4451 6.017109 CCTTCCAATATGGTATCAGTTTTCCG 60.017 42.308 0.00 0.00 39.03 4.30
1872 4488 2.493907 AAGTCTTCCGCTCCTGTCGC 62.494 60.000 0.00 0.00 0.00 5.19
1873 4489 3.760035 TCTTCCGCTCCTGTCGCC 61.760 66.667 0.00 0.00 0.00 5.54
1885 4501 4.760047 GTCGCCGCCACACCATCT 62.760 66.667 0.00 0.00 0.00 2.90
1886 4502 3.071837 TCGCCGCCACACCATCTA 61.072 61.111 0.00 0.00 0.00 1.98
1887 4503 2.586079 CGCCGCCACACCATCTAG 60.586 66.667 0.00 0.00 0.00 2.43
1888 4504 2.203070 GCCGCCACACCATCTAGG 60.203 66.667 0.00 0.00 45.67 3.02
1987 4626 1.227249 CCTACTCTCTCCTCCTCCCA 58.773 60.000 0.00 0.00 0.00 4.37
1988 4627 1.571457 CCTACTCTCTCCTCCTCCCAA 59.429 57.143 0.00 0.00 0.00 4.12
1989 4628 2.178984 CCTACTCTCTCCTCCTCCCAAT 59.821 54.545 0.00 0.00 0.00 3.16
1990 4629 2.470057 ACTCTCTCCTCCTCCCAATC 57.530 55.000 0.00 0.00 0.00 2.67
1991 4630 1.327303 CTCTCTCCTCCTCCCAATCG 58.673 60.000 0.00 0.00 0.00 3.34
1992 4631 0.757188 TCTCTCCTCCTCCCAATCGC 60.757 60.000 0.00 0.00 0.00 4.58
1993 4632 1.753368 CTCTCCTCCTCCCAATCGCC 61.753 65.000 0.00 0.00 0.00 5.54
1994 4633 2.040442 TCCTCCTCCCAATCGCCA 59.960 61.111 0.00 0.00 0.00 5.69
1995 4634 1.384502 TCCTCCTCCCAATCGCCAT 60.385 57.895 0.00 0.00 0.00 4.40
1996 4635 0.105194 TCCTCCTCCCAATCGCCATA 60.105 55.000 0.00 0.00 0.00 2.74
1997 4636 0.764890 CCTCCTCCCAATCGCCATAA 59.235 55.000 0.00 0.00 0.00 1.90
1998 4637 1.543429 CCTCCTCCCAATCGCCATAAC 60.543 57.143 0.00 0.00 0.00 1.89
1999 4638 0.472471 TCCTCCCAATCGCCATAACC 59.528 55.000 0.00 0.00 0.00 2.85
2000 4639 0.537371 CCTCCCAATCGCCATAACCC 60.537 60.000 0.00 0.00 0.00 4.11
2001 4640 0.537371 CTCCCAATCGCCATAACCCC 60.537 60.000 0.00 0.00 0.00 4.95
2002 4641 1.530655 CCCAATCGCCATAACCCCC 60.531 63.158 0.00 0.00 0.00 5.40
2003 4642 1.228793 CCAATCGCCATAACCCCCA 59.771 57.895 0.00 0.00 0.00 4.96
2004 4643 1.106944 CCAATCGCCATAACCCCCAC 61.107 60.000 0.00 0.00 0.00 4.61
2005 4644 1.106944 CAATCGCCATAACCCCCACC 61.107 60.000 0.00 0.00 0.00 4.61
2019 4677 2.579201 CACCGATCGCCACCTCTT 59.421 61.111 10.32 0.00 0.00 2.85
2043 4701 2.436115 GTGTCTACCTTGGGCCGC 60.436 66.667 0.00 0.00 0.00 6.53
2057 4715 1.227263 GCCGCCACTCATATCGTGT 60.227 57.895 2.10 0.00 0.00 4.49
2094 4752 1.119684 CATGGTGTCCCGATCCAGTA 58.880 55.000 0.00 0.00 34.62 2.74
2095 4753 1.484653 CATGGTGTCCCGATCCAGTAA 59.515 52.381 0.00 0.00 34.62 2.24
2109 4767 3.305720 TCCAGTAATGAGGCCGAGTATT 58.694 45.455 0.00 0.00 0.00 1.89
2137 4795 0.447801 GCTAACGCCATCACCAAGTG 59.552 55.000 0.00 0.00 34.45 3.16
2140 4798 1.398692 AACGCCATCACCAAGTGTTT 58.601 45.000 0.00 0.00 34.79 2.83
2147 4805 3.119388 CCATCACCAAGTGTTTATGGCTG 60.119 47.826 2.18 0.00 40.51 4.85
2172 4830 0.320247 ACTTCTTCAGGAGCTGCACG 60.320 55.000 8.35 0.00 0.00 5.34
2204 4862 3.006967 CCAAGGCTACTGTTGTCTACTGT 59.993 47.826 0.00 2.86 41.24 3.55
2209 4867 4.322049 GGCTACTGTTGTCTACTGTGACAT 60.322 45.833 11.82 3.20 45.03 3.06
2210 4868 5.230942 GCTACTGTTGTCTACTGTGACATT 58.769 41.667 11.82 0.00 45.03 2.71
2213 4871 5.050490 ACTGTTGTCTACTGTGACATTGTC 58.950 41.667 9.93 9.93 45.03 3.18
2214 4872 5.163405 ACTGTTGTCTACTGTGACATTGTCT 60.163 40.000 17.26 0.27 45.03 3.41
2215 4873 5.289595 TGTTGTCTACTGTGACATTGTCTC 58.710 41.667 17.26 14.06 45.03 3.36
2216 4874 4.521130 TGTCTACTGTGACATTGTCTCC 57.479 45.455 17.26 8.80 41.43 3.71
2217 4875 3.057526 TGTCTACTGTGACATTGTCTCCG 60.058 47.826 17.26 12.36 41.43 4.63
2218 4876 2.094700 TCTACTGTGACATTGTCTCCGC 60.095 50.000 17.26 6.38 33.15 5.54
2219 4877 0.320771 ACTGTGACATTGTCTCCGCC 60.321 55.000 17.26 2.19 33.15 6.13
2220 4878 1.354337 CTGTGACATTGTCTCCGCCG 61.354 60.000 17.26 0.66 33.15 6.46
2221 4879 1.374252 GTGACATTGTCTCCGCCGT 60.374 57.895 17.26 0.00 33.15 5.68
2222 4880 1.080093 TGACATTGTCTCCGCCGTC 60.080 57.895 17.26 0.00 33.15 4.79
2223 4881 1.215647 GACATTGTCTCCGCCGTCT 59.784 57.895 9.59 0.00 0.00 4.18
2224 4882 0.454600 GACATTGTCTCCGCCGTCTA 59.545 55.000 9.59 0.00 0.00 2.59
2225 4883 0.456221 ACATTGTCTCCGCCGTCTAG 59.544 55.000 0.00 0.00 0.00 2.43
2250 4908 1.312371 CGCCAACCCCGTTCATCATT 61.312 55.000 0.00 0.00 0.00 2.57
2282 4940 3.806521 AGCATATTGAGCTCGACATTCAC 59.193 43.478 5.59 0.00 38.01 3.18
2316 4974 3.111838 CAGATGACTCTCGGACATTTCG 58.888 50.000 0.00 0.00 31.12 3.46
2375 5033 2.443632 TGTCATGACAAAGGGGTTACCA 59.556 45.455 26.02 0.00 39.19 3.25
2376 5034 3.075283 TGTCATGACAAAGGGGTTACCAT 59.925 43.478 26.02 0.00 39.19 3.55
2377 5035 3.443681 GTCATGACAAAGGGGTTACCATG 59.556 47.826 21.07 0.00 43.89 3.66
2378 5036 1.917872 TGACAAAGGGGTTACCATGC 58.082 50.000 2.98 0.00 43.89 4.06
2379 5037 0.808755 GACAAAGGGGTTACCATGCG 59.191 55.000 2.98 0.00 43.89 4.73
2380 5038 0.111639 ACAAAGGGGTTACCATGCGT 59.888 50.000 2.98 0.00 43.89 5.24
2381 5039 0.525761 CAAAGGGGTTACCATGCGTG 59.474 55.000 2.98 0.00 43.89 5.34
2382 5040 0.402504 AAAGGGGTTACCATGCGTGA 59.597 50.000 7.72 0.00 43.89 4.35
2383 5041 0.035439 AAGGGGTTACCATGCGTGAG 60.035 55.000 7.72 0.00 43.89 3.51
2396 5054 2.945315 CGTGAGCAGGTGACGTATC 58.055 57.895 3.18 0.00 0.00 2.24
2397 5055 0.861866 CGTGAGCAGGTGACGTATCG 60.862 60.000 3.18 0.00 0.00 2.92
2398 5056 0.450583 GTGAGCAGGTGACGTATCGA 59.549 55.000 0.00 0.00 0.00 3.59
2399 5057 0.450583 TGAGCAGGTGACGTATCGAC 59.549 55.000 0.00 0.00 0.00 4.20
2400 5058 0.733729 GAGCAGGTGACGTATCGACT 59.266 55.000 0.00 0.00 0.00 4.18
2401 5059 0.452184 AGCAGGTGACGTATCGACTG 59.548 55.000 0.00 0.00 35.43 3.51
2402 5060 1.140407 GCAGGTGACGTATCGACTGC 61.140 60.000 12.31 12.31 44.61 4.40
2403 5061 0.861866 CAGGTGACGTATCGACTGCG 60.862 60.000 0.00 0.00 39.08 5.18
2404 5062 1.585521 GGTGACGTATCGACTGCGG 60.586 63.158 9.35 0.00 37.27 5.69
2405 5063 1.585521 GTGACGTATCGACTGCGGG 60.586 63.158 0.00 0.00 37.27 6.13
2406 5064 2.025727 GACGTATCGACTGCGGGG 59.974 66.667 0.00 0.00 37.27 5.73
2407 5065 3.480225 GACGTATCGACTGCGGGGG 62.480 68.421 0.00 0.00 37.27 5.40
2423 5081 2.806945 GGGGGAGTTGAATCATCACA 57.193 50.000 0.00 0.00 34.61 3.58
2424 5082 3.303351 GGGGGAGTTGAATCATCACAT 57.697 47.619 0.00 0.00 34.61 3.21
2425 5083 2.954318 GGGGGAGTTGAATCATCACATG 59.046 50.000 0.00 0.00 34.61 3.21
2426 5084 3.624777 GGGGAGTTGAATCATCACATGT 58.375 45.455 0.00 0.00 34.61 3.21
2427 5085 4.385199 GGGGGAGTTGAATCATCACATGTA 60.385 45.833 0.00 0.00 34.61 2.29
2428 5086 5.380043 GGGGAGTTGAATCATCACATGTAT 58.620 41.667 0.00 0.00 34.61 2.29
2429 5087 5.240183 GGGGAGTTGAATCATCACATGTATG 59.760 44.000 0.00 3.61 34.61 2.39
2430 5088 5.240183 GGGAGTTGAATCATCACATGTATGG 59.760 44.000 0.00 0.00 34.61 2.74
2431 5089 5.824624 GGAGTTGAATCATCACATGTATGGT 59.175 40.000 0.00 0.00 34.61 3.55
2432 5090 6.319658 GGAGTTGAATCATCACATGTATGGTT 59.680 38.462 0.00 5.82 34.61 3.67
2433 5091 7.498900 GGAGTTGAATCATCACATGTATGGTTA 59.501 37.037 0.00 0.00 34.61 2.85
2434 5092 8.442632 AGTTGAATCATCACATGTATGGTTAG 57.557 34.615 0.00 0.00 34.61 2.34
2435 5093 7.500227 AGTTGAATCATCACATGTATGGTTAGG 59.500 37.037 0.00 0.00 34.61 2.69
2436 5094 7.135591 TGAATCATCACATGTATGGTTAGGA 57.864 36.000 0.00 0.00 27.84 2.94
2437 5095 7.748677 TGAATCATCACATGTATGGTTAGGAT 58.251 34.615 0.00 0.00 27.84 3.24
2438 5096 7.879677 TGAATCATCACATGTATGGTTAGGATC 59.120 37.037 0.00 0.00 27.84 3.36
2439 5097 6.745794 TCATCACATGTATGGTTAGGATCA 57.254 37.500 0.00 0.00 0.00 2.92
2440 5098 7.320384 TCATCACATGTATGGTTAGGATCAT 57.680 36.000 0.00 0.00 0.00 2.45
2441 5099 7.748677 TCATCACATGTATGGTTAGGATCATT 58.251 34.615 0.00 0.00 0.00 2.57
2442 5100 8.219868 TCATCACATGTATGGTTAGGATCATTT 58.780 33.333 0.00 0.00 0.00 2.32
2443 5101 8.509690 CATCACATGTATGGTTAGGATCATTTC 58.490 37.037 0.00 0.00 0.00 2.17
2444 5102 7.805163 TCACATGTATGGTTAGGATCATTTCT 58.195 34.615 0.00 0.00 0.00 2.52
2445 5103 8.274322 TCACATGTATGGTTAGGATCATTTCTT 58.726 33.333 0.00 0.00 0.00 2.52
2446 5104 9.559732 CACATGTATGGTTAGGATCATTTCTTA 57.440 33.333 0.00 0.00 0.00 2.10
2450 5108 9.967451 TGTATGGTTAGGATCATTTCTTAACAA 57.033 29.630 9.05 0.10 44.57 2.83
2453 5111 8.117813 TGGTTAGGATCATTTCTTAACAAACC 57.882 34.615 9.05 0.00 44.57 3.27
2454 5112 7.177744 TGGTTAGGATCATTTCTTAACAAACCC 59.822 37.037 9.05 0.00 44.57 4.11
2455 5113 7.177744 GGTTAGGATCATTTCTTAACAAACCCA 59.822 37.037 9.05 0.00 44.57 4.51
2456 5114 6.590234 AGGATCATTTCTTAACAAACCCAC 57.410 37.500 0.00 0.00 0.00 4.61
2457 5115 5.480422 AGGATCATTTCTTAACAAACCCACC 59.520 40.000 0.00 0.00 0.00 4.61
2458 5116 5.480422 GGATCATTTCTTAACAAACCCACCT 59.520 40.000 0.00 0.00 0.00 4.00
2459 5117 6.350194 GGATCATTTCTTAACAAACCCACCTC 60.350 42.308 0.00 0.00 0.00 3.85
2460 5118 5.450453 TCATTTCTTAACAAACCCACCTCA 58.550 37.500 0.00 0.00 0.00 3.86
2461 5119 6.074648 TCATTTCTTAACAAACCCACCTCAT 58.925 36.000 0.00 0.00 0.00 2.90
2462 5120 5.782893 TTTCTTAACAAACCCACCTCATG 57.217 39.130 0.00 0.00 0.00 3.07
2463 5121 4.447138 TCTTAACAAACCCACCTCATGT 57.553 40.909 0.00 0.00 0.00 3.21
2464 5122 4.798882 TCTTAACAAACCCACCTCATGTT 58.201 39.130 0.00 0.00 37.86 2.71
2465 5123 5.205056 TCTTAACAAACCCACCTCATGTTT 58.795 37.500 0.00 0.00 35.89 2.83
2466 5124 5.300792 TCTTAACAAACCCACCTCATGTTTC 59.699 40.000 0.00 0.00 35.89 2.78
2467 5125 2.316108 ACAAACCCACCTCATGTTTCC 58.684 47.619 0.00 0.00 30.19 3.13
2468 5126 2.091333 ACAAACCCACCTCATGTTTCCT 60.091 45.455 0.00 0.00 30.19 3.36
2469 5127 2.965147 CAAACCCACCTCATGTTTCCTT 59.035 45.455 0.00 0.00 30.19 3.36
2470 5128 2.292828 ACCCACCTCATGTTTCCTTG 57.707 50.000 0.00 0.00 0.00 3.61
2471 5129 1.499007 ACCCACCTCATGTTTCCTTGT 59.501 47.619 0.00 0.00 0.00 3.16
2472 5130 2.714250 ACCCACCTCATGTTTCCTTGTA 59.286 45.455 0.00 0.00 0.00 2.41
2473 5131 3.244911 ACCCACCTCATGTTTCCTTGTAG 60.245 47.826 0.00 0.00 0.00 2.74
2474 5132 3.009033 CCCACCTCATGTTTCCTTGTAGA 59.991 47.826 0.00 0.00 0.00 2.59
2475 5133 4.256920 CCACCTCATGTTTCCTTGTAGAG 58.743 47.826 0.00 0.00 0.00 2.43
2476 5134 4.263068 CCACCTCATGTTTCCTTGTAGAGT 60.263 45.833 0.00 0.00 0.00 3.24
2477 5135 5.308825 CACCTCATGTTTCCTTGTAGAGTT 58.691 41.667 0.00 0.00 0.00 3.01
2478 5136 5.180117 CACCTCATGTTTCCTTGTAGAGTTG 59.820 44.000 0.00 0.00 0.00 3.16
2479 5137 5.071788 ACCTCATGTTTCCTTGTAGAGTTGA 59.928 40.000 0.00 0.00 0.00 3.18
2480 5138 5.641209 CCTCATGTTTCCTTGTAGAGTTGAG 59.359 44.000 0.00 0.00 0.00 3.02
2481 5139 5.551233 TCATGTTTCCTTGTAGAGTTGAGG 58.449 41.667 0.00 0.00 0.00 3.86
2482 5140 5.306937 TCATGTTTCCTTGTAGAGTTGAGGA 59.693 40.000 0.00 0.00 36.55 3.71
2483 5141 4.957296 TGTTTCCTTGTAGAGTTGAGGAC 58.043 43.478 0.00 0.00 37.99 3.85
2484 5142 3.936372 TTCCTTGTAGAGTTGAGGACG 57.064 47.619 0.00 0.00 37.99 4.79
2485 5143 2.872732 TCCTTGTAGAGTTGAGGACGT 58.127 47.619 0.00 0.00 33.51 4.34
2486 5144 2.557056 TCCTTGTAGAGTTGAGGACGTG 59.443 50.000 0.00 0.00 33.51 4.49
2487 5145 2.352814 CCTTGTAGAGTTGAGGACGTGG 60.353 54.545 0.00 0.00 0.00 4.94
2488 5146 1.254026 TGTAGAGTTGAGGACGTGGG 58.746 55.000 0.00 0.00 0.00 4.61
2489 5147 0.108756 GTAGAGTTGAGGACGTGGGC 60.109 60.000 0.00 0.00 0.00 5.36
2490 5148 0.251653 TAGAGTTGAGGACGTGGGCT 60.252 55.000 0.00 0.00 0.00 5.19
2491 5149 0.251653 AGAGTTGAGGACGTGGGCTA 60.252 55.000 0.00 0.00 0.00 3.93
2492 5150 0.108756 GAGTTGAGGACGTGGGCTAC 60.109 60.000 0.00 0.00 0.00 3.58
2493 5151 0.830444 AGTTGAGGACGTGGGCTACA 60.830 55.000 0.00 0.00 0.00 2.74
2494 5152 0.669625 GTTGAGGACGTGGGCTACAC 60.670 60.000 0.00 2.56 46.78 2.90
2502 5160 1.959226 GTGGGCTACACCGTGTGTG 60.959 63.158 14.66 8.09 46.84 3.82
2509 5167 2.403186 CACCGTGTGTGTGTGCAC 59.597 61.111 10.75 10.75 45.44 4.57
2529 5187 2.983030 GCGTGTGGATGCACCCAA 60.983 61.111 15.34 0.00 38.06 4.12
2530 5188 2.342650 GCGTGTGGATGCACCCAAT 61.343 57.895 15.34 0.00 38.06 3.16
2531 5189 1.802636 CGTGTGGATGCACCCAATC 59.197 57.895 15.34 0.00 38.06 2.67
2532 5190 0.677731 CGTGTGGATGCACCCAATCT 60.678 55.000 15.34 0.00 38.06 2.40
2533 5191 1.406751 CGTGTGGATGCACCCAATCTA 60.407 52.381 15.34 0.00 38.06 1.98
2534 5192 2.722094 GTGTGGATGCACCCAATCTAA 58.278 47.619 15.34 0.00 38.06 2.10
2535 5193 3.290710 GTGTGGATGCACCCAATCTAAT 58.709 45.455 15.34 0.00 38.06 1.73
2536 5194 3.701040 GTGTGGATGCACCCAATCTAATT 59.299 43.478 15.34 0.00 38.06 1.40
2537 5195 3.700539 TGTGGATGCACCCAATCTAATTG 59.299 43.478 15.34 0.00 38.06 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.258543 TGGCTTCTTCGTTAAAATCCGAT 58.741 39.130 0.00 0.00 32.44 4.18
2 3 4.153475 TCTTGGCTTCTTCGTTAAAATCCG 59.847 41.667 0.00 0.00 0.00 4.18
3 4 5.622770 TCTTGGCTTCTTCGTTAAAATCC 57.377 39.130 0.00 0.00 0.00 3.01
4 5 6.842163 TCATCTTGGCTTCTTCGTTAAAATC 58.158 36.000 0.00 0.00 0.00 2.17
6 7 6.429692 TCATCATCTTGGCTTCTTCGTTAAAA 59.570 34.615 0.00 0.00 0.00 1.52
7 8 5.937540 TCATCATCTTGGCTTCTTCGTTAAA 59.062 36.000 0.00 0.00 0.00 1.52
8 9 5.487433 TCATCATCTTGGCTTCTTCGTTAA 58.513 37.500 0.00 0.00 0.00 2.01
9 10 5.084818 TCATCATCTTGGCTTCTTCGTTA 57.915 39.130 0.00 0.00 0.00 3.18
31 32 1.679680 CGAAGCCAATTGGATGCTCAT 59.320 47.619 29.02 6.06 37.39 2.90
75 76 0.606944 CTCGAGAGACCCTATCCCGG 60.607 65.000 6.58 0.00 35.39 5.73
99 100 9.752961 GGATCAAAGTAGTCCTTTTAGAGTATC 57.247 37.037 0.00 0.00 41.51 2.24
132 133 0.779997 ACCATTCACCAGGGAAAGCT 59.220 50.000 0.00 0.00 0.00 3.74
162 163 3.758554 ACACTGGTTTCTGCATATGGAAC 59.241 43.478 4.56 0.00 0.00 3.62
173 174 0.663153 GCGCAAGAACACTGGTTTCT 59.337 50.000 0.30 0.00 37.36 2.52
181 182 3.295228 ATGACGCGCGCAAGAACAC 62.295 57.895 32.58 13.23 43.02 3.32
192 193 2.202797 CACTCCCTCCATGACGCG 60.203 66.667 3.53 3.53 0.00 6.01
195 196 1.977293 GCCTCCACTCCCTCCATGAC 61.977 65.000 0.00 0.00 0.00 3.06
197 198 2.914289 GCCTCCACTCCCTCCATG 59.086 66.667 0.00 0.00 0.00 3.66
198 199 2.765807 CGCCTCCACTCCCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
229 230 7.025136 CTCGAAGATTCTGATGCATCTGCAG 62.025 48.000 26.32 16.58 46.97 4.41
230 231 8.629844 ATCTCGAAGATTCTGATGCATCTGCA 62.630 42.308 26.32 17.33 43.44 4.41
231 232 3.129109 TCGAAGATTCTGATGCATCTGC 58.871 45.455 26.32 13.53 42.50 4.26
232 233 4.618965 TCTCGAAGATTCTGATGCATCTG 58.381 43.478 26.32 24.85 33.89 2.90
234 235 5.228665 TGATCTCGAAGATTCTGATGCATC 58.771 41.667 20.14 20.14 34.53 3.91
236 237 4.660789 TGATCTCGAAGATTCTGATGCA 57.339 40.909 0.00 0.00 34.53 3.96
237 238 6.310956 CCTAATGATCTCGAAGATTCTGATGC 59.689 42.308 0.00 0.00 34.53 3.91
238 239 7.377398 ACCTAATGATCTCGAAGATTCTGATG 58.623 38.462 0.00 0.00 34.53 3.07
239 240 7.537596 ACCTAATGATCTCGAAGATTCTGAT 57.462 36.000 0.00 0.00 34.53 2.90
240 241 6.968263 ACCTAATGATCTCGAAGATTCTGA 57.032 37.500 0.00 0.00 34.53 3.27
241 242 7.593273 GTGTACCTAATGATCTCGAAGATTCTG 59.407 40.741 0.00 0.00 34.53 3.02
242 243 7.520776 CGTGTACCTAATGATCTCGAAGATTCT 60.521 40.741 0.00 0.00 34.53 2.40
243 244 6.579292 CGTGTACCTAATGATCTCGAAGATTC 59.421 42.308 0.00 0.00 34.53 2.52
244 245 6.439599 CGTGTACCTAATGATCTCGAAGATT 58.560 40.000 0.00 0.00 34.53 2.40
245 246 5.563085 GCGTGTACCTAATGATCTCGAAGAT 60.563 44.000 0.00 0.00 37.73 2.40
246 247 4.261072 GCGTGTACCTAATGATCTCGAAGA 60.261 45.833 0.00 0.00 0.00 2.87
247 248 3.975670 GCGTGTACCTAATGATCTCGAAG 59.024 47.826 0.00 0.00 0.00 3.79
248 249 3.379057 TGCGTGTACCTAATGATCTCGAA 59.621 43.478 0.00 0.00 0.00 3.71
249 250 2.946990 TGCGTGTACCTAATGATCTCGA 59.053 45.455 0.00 0.00 0.00 4.04
250 251 3.043586 GTGCGTGTACCTAATGATCTCG 58.956 50.000 0.00 0.00 0.00 4.04
251 252 4.041740 TGTGCGTGTACCTAATGATCTC 57.958 45.455 0.00 0.00 0.00 2.75
256 257 5.579119 TGAATAGTTGTGCGTGTACCTAATG 59.421 40.000 0.00 0.00 0.00 1.90
277 278 6.093082 CACATATGCTTCACAAGATCACTGAA 59.907 38.462 1.58 0.00 0.00 3.02
279 280 5.220796 CCACATATGCTTCACAAGATCACTG 60.221 44.000 1.58 0.00 0.00 3.66
317 318 7.818930 CCACAATTCAAACATTAGCTATTTGGT 59.181 33.333 15.08 4.18 34.70 3.67
402 403 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
403 404 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
404 405 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
407 408 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
408 409 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
409 410 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
410 411 1.714794 GCGCTTGTGTCTGTACTGAT 58.285 50.000 0.00 0.00 0.00 2.90
411 412 0.663269 CGCGCTTGTGTCTGTACTGA 60.663 55.000 5.56 0.00 0.00 3.41
412 413 1.775344 CGCGCTTGTGTCTGTACTG 59.225 57.895 5.56 0.00 0.00 2.74
413 414 2.022129 GCGCGCTTGTGTCTGTACT 61.022 57.895 26.67 0.00 0.00 2.73
414 415 1.626654 ATGCGCGCTTGTGTCTGTAC 61.627 55.000 33.29 0.00 0.00 2.90
415 416 0.109039 TATGCGCGCTTGTGTCTGTA 60.109 50.000 33.29 7.91 0.00 2.74
416 417 0.740868 ATATGCGCGCTTGTGTCTGT 60.741 50.000 33.29 8.92 0.00 3.41
417 418 1.071239 GTATATGCGCGCTTGTGTCTG 60.071 52.381 33.29 0.00 0.00 3.51
418 419 1.209128 GTATATGCGCGCTTGTGTCT 58.791 50.000 33.29 11.88 0.00 3.41
419 420 0.927537 TGTATATGCGCGCTTGTGTC 59.072 50.000 33.29 19.81 0.00 3.67
420 421 0.650512 GTGTATATGCGCGCTTGTGT 59.349 50.000 33.29 17.98 0.00 3.72
421 422 0.381789 CGTGTATATGCGCGCTTGTG 60.382 55.000 33.29 8.46 35.59 3.33
422 423 0.804544 ACGTGTATATGCGCGCTTGT 60.805 50.000 33.29 25.72 45.06 3.16
423 424 0.381789 CACGTGTATATGCGCGCTTG 60.382 55.000 33.29 14.90 45.06 4.01
424 425 1.924335 CACGTGTATATGCGCGCTT 59.076 52.632 33.29 28.14 45.06 4.68
425 426 2.585869 GCACGTGTATATGCGCGCT 61.586 57.895 33.29 19.73 45.06 5.92
426 427 2.128128 GCACGTGTATATGCGCGC 60.128 61.111 27.26 27.26 45.06 6.86
427 428 1.056869 TATGCACGTGTATATGCGCG 58.943 50.000 20.58 22.60 45.13 6.86
428 429 1.790043 TGTATGCACGTGTATATGCGC 59.210 47.619 25.81 15.09 45.13 6.09
429 430 3.418281 GTGTATGCACGTGTATATGCG 57.582 47.619 25.81 0.00 45.13 4.73
443 444 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
446 447 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
447 448 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
448 449 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
449 450 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
450 451 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
451 452 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
452 453 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
453 454 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
454 455 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
455 456 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
457 458 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
458 459 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
459 460 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
464 465 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
465 466 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
466 467 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
467 468 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
468 469 0.832983 TAAGGGTAGGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
469 470 0.539986 ATAAGGGTAGGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
470 471 0.539986 CATAAGGGTAGGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
471 472 0.828022 TCATAAGGGTAGGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
472 473 1.475213 GCTCATAAGGGTAGGGTGTGC 60.475 57.143 0.00 0.00 0.00 4.57
473 474 1.837439 TGCTCATAAGGGTAGGGTGTG 59.163 52.381 0.00 0.00 0.00 3.82
474 475 1.838077 GTGCTCATAAGGGTAGGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
475 476 1.141053 GGTGCTCATAAGGGTAGGGTG 59.859 57.143 0.00 0.00 0.00 4.61
477 478 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
478 479 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
479 480 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
481 482 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
482 483 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
483 484 2.168521 TCTTTCGGAGGTGCTCATAAGG 59.831 50.000 0.00 0.00 31.08 2.69
484 485 3.118956 AGTCTTTCGGAGGTGCTCATAAG 60.119 47.826 0.00 0.00 31.08 1.73
485 486 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
487 488 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
488 489 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
489 490 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
491 492 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
492 493 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
493 494 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
494 495 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
495 496 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
496 497 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
497 498 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
498 499 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
499 500 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
500 501 1.539065 CGATATGCCGGCTCAGTCTTT 60.539 52.381 29.70 3.35 0.00 2.52
501 502 0.032678 CGATATGCCGGCTCAGTCTT 59.967 55.000 29.70 5.10 0.00 3.01
502 503 1.109920 ACGATATGCCGGCTCAGTCT 61.110 55.000 29.70 6.09 0.00 3.24
503 504 0.664767 GACGATATGCCGGCTCAGTC 60.665 60.000 29.70 23.15 34.11 3.51
504 505 1.109920 AGACGATATGCCGGCTCAGT 61.110 55.000 29.70 19.46 46.40 3.41
505 506 0.881796 TAGACGATATGCCGGCTCAG 59.118 55.000 29.70 16.33 46.40 3.35
506 507 0.881796 CTAGACGATATGCCGGCTCA 59.118 55.000 29.70 15.91 46.40 4.26
509 510 2.433868 TTTCTAGACGATATGCCGGC 57.566 50.000 22.73 22.73 37.97 6.13
510 511 5.060569 CGTAAATTTCTAGACGATATGCCGG 59.939 44.000 0.00 0.00 37.50 6.13
511 512 5.854866 TCGTAAATTTCTAGACGATATGCCG 59.145 40.000 9.29 0.00 39.25 5.69
512 513 7.381678 ACTTCGTAAATTTCTAGACGATATGCC 59.618 37.037 13.11 0.00 43.23 4.40
513 514 8.283340 ACTTCGTAAATTTCTAGACGATATGC 57.717 34.615 13.11 0.00 43.23 3.14
514 515 9.447040 TGACTTCGTAAATTTCTAGACGATATG 57.553 33.333 13.11 9.76 43.23 1.78
515 516 9.448294 GTGACTTCGTAAATTTCTAGACGATAT 57.552 33.333 13.11 6.22 43.23 1.63
516 517 7.912250 GGTGACTTCGTAAATTTCTAGACGATA 59.088 37.037 13.11 5.72 43.23 2.92
517 518 6.750963 GGTGACTTCGTAAATTTCTAGACGAT 59.249 38.462 13.11 1.91 43.23 3.73
518 519 6.088824 GGTGACTTCGTAAATTTCTAGACGA 58.911 40.000 9.29 9.29 42.17 4.20
521 522 6.017400 ACGGTGACTTCGTAAATTTCTAGA 57.983 37.500 0.00 0.00 39.22 2.43
522 523 6.471519 CCTACGGTGACTTCGTAAATTTCTAG 59.528 42.308 0.00 0.00 41.62 2.43
524 525 5.166398 CCTACGGTGACTTCGTAAATTTCT 58.834 41.667 0.00 0.00 41.62 2.52
525 526 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
526 527 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
527 528 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
528 529 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
530 531 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
531 532 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
532 533 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
533 534 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
534 535 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
535 536 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
536 537 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
537 538 2.151049 AACGAGGTGCCTACGGTGAC 62.151 60.000 12.22 0.00 0.00 3.67
538 539 1.904865 AACGAGGTGCCTACGGTGA 60.905 57.895 12.22 0.00 0.00 4.02
540 541 2.151049 GACAACGAGGTGCCTACGGT 62.151 60.000 12.22 5.36 0.00 4.83
542 543 1.800315 CGACAACGAGGTGCCTACG 60.800 63.158 0.00 0.00 42.66 3.51
553 554 3.604400 ACGTTTCCGTCGACAACG 58.396 55.556 27.79 27.79 46.28 4.10
562 563 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
563 564 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
564 565 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
565 566 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
566 567 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
567 568 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
568 569 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
569 570 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
570 571 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
571 572 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
572 573 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
573 574 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
574 575 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
575 576 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
576 577 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
587 588 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
588 589 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
589 590 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
590 591 5.828299 TTTATTTCAGAATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
591 592 5.828299 ATTTATTTCAGAATTTCCGGCGA 57.172 34.783 9.30 0.00 0.00 5.54
592 593 6.033341 TGAATTTATTTCAGAATTTCCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
605 606 9.999883 GCTCGCATTTATTCATGAATTTATTTC 57.000 29.630 25.26 10.27 34.72 2.17
606 607 9.531942 TGCTCGCATTTATTCATGAATTTATTT 57.468 25.926 25.26 4.24 32.50 1.40
607 608 9.701098 ATGCTCGCATTTATTCATGAATTTATT 57.299 25.926 25.26 4.99 31.82 1.40
608 609 9.350357 GATGCTCGCATTTATTCATGAATTTAT 57.650 29.630 25.26 15.63 36.70 1.40
609 610 8.351461 TGATGCTCGCATTTATTCATGAATTTA 58.649 29.630 25.26 14.15 36.70 1.40
610 611 7.204604 TGATGCTCGCATTTATTCATGAATTT 58.795 30.769 25.26 6.52 36.70 1.82
611 612 6.741109 TGATGCTCGCATTTATTCATGAATT 58.259 32.000 25.26 5.77 36.70 2.17
612 613 6.321848 TGATGCTCGCATTTATTCATGAAT 57.678 33.333 23.75 23.75 36.70 2.57
613 614 5.754543 TGATGCTCGCATTTATTCATGAA 57.245 34.783 11.26 11.26 36.70 2.57
614 615 5.528320 TCTTGATGCTCGCATTTATTCATGA 59.472 36.000 5.79 5.17 36.70 3.07
615 616 5.754778 TCTTGATGCTCGCATTTATTCATG 58.245 37.500 5.79 3.05 36.70 3.07
616 617 6.570672 ATCTTGATGCTCGCATTTATTCAT 57.429 33.333 5.79 0.00 36.70 2.57
617 618 6.381481 AATCTTGATGCTCGCATTTATTCA 57.619 33.333 5.79 0.00 36.70 2.57
618 619 6.914215 TGAAATCTTGATGCTCGCATTTATTC 59.086 34.615 5.79 6.41 36.70 1.75
619 620 6.798482 TGAAATCTTGATGCTCGCATTTATT 58.202 32.000 5.79 1.98 36.70 1.40
620 621 6.381481 TGAAATCTTGATGCTCGCATTTAT 57.619 33.333 5.79 0.00 36.70 1.40
621 622 5.816449 TGAAATCTTGATGCTCGCATTTA 57.184 34.783 5.79 0.00 36.70 1.40
622 623 4.707030 TGAAATCTTGATGCTCGCATTT 57.293 36.364 5.79 0.00 36.70 2.32
623 624 4.157289 AGTTGAAATCTTGATGCTCGCATT 59.843 37.500 5.79 0.00 36.70 3.56
624 625 3.693085 AGTTGAAATCTTGATGCTCGCAT 59.307 39.130 3.70 3.70 39.69 4.73
625 626 3.076621 AGTTGAAATCTTGATGCTCGCA 58.923 40.909 0.00 0.00 0.00 5.10
626 627 3.373439 AGAGTTGAAATCTTGATGCTCGC 59.627 43.478 0.00 0.00 0.00 5.03
627 628 5.809562 ACTAGAGTTGAAATCTTGATGCTCG 59.190 40.000 10.70 0.00 0.00 5.03
628 629 6.036953 CCACTAGAGTTGAAATCTTGATGCTC 59.963 42.308 10.70 0.00 0.00 4.26
629 630 5.879223 CCACTAGAGTTGAAATCTTGATGCT 59.121 40.000 10.70 0.00 0.00 3.79
630 631 5.065731 CCCACTAGAGTTGAAATCTTGATGC 59.934 44.000 10.70 0.00 0.00 3.91
631 632 5.065731 GCCCACTAGAGTTGAAATCTTGATG 59.934 44.000 10.70 5.68 0.00 3.07
632 633 5.045286 AGCCCACTAGAGTTGAAATCTTGAT 60.045 40.000 10.70 0.00 0.00 2.57
633 634 4.287067 AGCCCACTAGAGTTGAAATCTTGA 59.713 41.667 10.70 0.00 0.00 3.02
634 635 4.583871 AGCCCACTAGAGTTGAAATCTTG 58.416 43.478 0.00 1.09 0.00 3.02
635 636 4.917906 AGCCCACTAGAGTTGAAATCTT 57.082 40.909 0.00 0.00 0.00 2.40
647 648 2.249139 GTGGTATCCCTAGCCCACTAG 58.751 57.143 0.00 0.00 43.21 2.57
648 649 1.576757 TGTGGTATCCCTAGCCCACTA 59.423 52.381 8.91 0.00 46.02 2.74
649 650 0.341961 TGTGGTATCCCTAGCCCACT 59.658 55.000 8.91 0.00 46.02 4.00
650 651 0.759346 CTGTGGTATCCCTAGCCCAC 59.241 60.000 0.00 0.00 46.04 4.61
651 652 1.054406 GCTGTGGTATCCCTAGCCCA 61.054 60.000 0.00 0.00 36.35 5.36
652 653 1.755384 GCTGTGGTATCCCTAGCCC 59.245 63.158 0.00 0.00 36.35 5.19
653 654 1.755384 GGCTGTGGTATCCCTAGCC 59.245 63.158 7.28 7.28 46.86 3.93
654 655 1.755384 GGGCTGTGGTATCCCTAGC 59.245 63.158 0.00 0.00 39.46 3.42
655 656 2.453242 GGGGCTGTGGTATCCCTAG 58.547 63.158 0.00 0.00 39.95 3.02
656 657 4.741647 GGGGCTGTGGTATCCCTA 57.258 61.111 0.00 0.00 39.95 3.53
657 658 2.795147 AGGGGCTGTGGTATCCCT 59.205 61.111 0.00 0.00 44.43 4.20
658 659 0.105142 TAGAGGGGCTGTGGTATCCC 60.105 60.000 0.00 0.00 39.67 3.85
659 660 1.416772 GTTAGAGGGGCTGTGGTATCC 59.583 57.143 0.00 0.00 0.00 2.59
660 661 1.416772 GGTTAGAGGGGCTGTGGTATC 59.583 57.143 0.00 0.00 0.00 2.24
661 662 1.274184 TGGTTAGAGGGGCTGTGGTAT 60.274 52.381 0.00 0.00 0.00 2.73
662 663 0.117541 TGGTTAGAGGGGCTGTGGTA 59.882 55.000 0.00 0.00 0.00 3.25
663 664 0.550147 ATGGTTAGAGGGGCTGTGGT 60.550 55.000 0.00 0.00 0.00 4.16
664 665 0.181350 GATGGTTAGAGGGGCTGTGG 59.819 60.000 0.00 0.00 0.00 4.17
665 666 0.181350 GGATGGTTAGAGGGGCTGTG 59.819 60.000 0.00 0.00 0.00 3.66
666 667 0.253160 TGGATGGTTAGAGGGGCTGT 60.253 55.000 0.00 0.00 0.00 4.40
667 668 0.918983 TTGGATGGTTAGAGGGGCTG 59.081 55.000 0.00 0.00 0.00 4.85
668 669 0.919710 GTTGGATGGTTAGAGGGGCT 59.080 55.000 0.00 0.00 0.00 5.19
669 670 0.106669 GGTTGGATGGTTAGAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
670 671 1.064685 GTGGTTGGATGGTTAGAGGGG 60.065 57.143 0.00 0.00 0.00 4.79
671 672 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
672 673 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
673 674 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
674 675 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
675 676 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
688 689 2.014128 AGAAACGTGAACCAACCTGTG 58.986 47.619 0.00 0.00 0.00 3.66
689 690 2.413310 AGAAACGTGAACCAACCTGT 57.587 45.000 0.00 0.00 0.00 4.00
690 691 3.188460 CCATAGAAACGTGAACCAACCTG 59.812 47.826 0.00 0.00 0.00 4.00
691 692 3.071892 TCCATAGAAACGTGAACCAACCT 59.928 43.478 0.00 0.00 0.00 3.50
692 693 3.187842 GTCCATAGAAACGTGAACCAACC 59.812 47.826 0.00 0.00 0.00 3.77
693 694 3.120786 CGTCCATAGAAACGTGAACCAAC 60.121 47.826 0.00 0.00 34.30 3.77
694 695 3.061322 CGTCCATAGAAACGTGAACCAA 58.939 45.455 0.00 0.00 34.30 3.67
695 696 2.679450 CGTCCATAGAAACGTGAACCA 58.321 47.619 0.00 0.00 34.30 3.67
702 703 4.698276 CACTTCAAACGTCCATAGAAACG 58.302 43.478 0.00 0.00 44.22 3.60
710 711 1.890041 CCGGCACTTCAAACGTCCA 60.890 57.895 0.00 0.00 0.00 4.02
741 742 5.126707 AGTGAAATGAGAGCATCCAAAATCC 59.873 40.000 0.00 0.00 33.66 3.01
838 839 7.696453 CAGACCGTTAAAATCATTGTGTATTCC 59.304 37.037 0.00 0.00 0.00 3.01
860 861 2.405892 AGCGTGCAATCAAAACAGAC 57.594 45.000 0.00 0.00 0.00 3.51
1016 2684 5.704515 AGTATGATTGATGTATGGAAGCAGC 59.295 40.000 0.00 0.00 0.00 5.25
1062 2730 2.632028 ACATTGTGCATGGGTAGCAAAA 59.368 40.909 0.00 0.00 44.64 2.44
1354 3116 5.473504 CACCTGGTATATTGACCCTAATTGC 59.526 44.000 0.00 0.00 38.89 3.56
1394 3156 2.501223 TACGTCTTTGCAGCCCCGAG 62.501 60.000 0.00 0.00 0.00 4.63
1783 4399 5.116180 TGCGACTCTTAATTAGATTGGGTG 58.884 41.667 0.00 0.00 30.92 4.61
1785 4401 6.662616 CAATGCGACTCTTAATTAGATTGGG 58.337 40.000 0.00 0.00 30.92 4.12
1797 4413 0.036732 TGGAAGGCAATGCGACTCTT 59.963 50.000 0.00 0.00 0.00 2.85
1803 4419 1.682854 ACCATATTGGAAGGCAATGCG 59.317 47.619 0.00 0.00 40.96 4.73
1816 4432 5.374071 GGGTCGGAAAACTGATACCATATT 58.626 41.667 0.00 0.00 0.00 1.28
1835 4451 3.036819 ACTTAGGTTTAGGATCGGGGTC 58.963 50.000 0.00 0.00 0.00 4.46
1880 4496 4.647615 CGGCGGCGACCTAGATGG 62.648 72.222 29.19 0.00 42.93 3.51
1987 4626 1.229076 GGTGGGGGTTATGGCGATT 59.771 57.895 0.00 0.00 0.00 3.34
1988 4627 2.923837 GGTGGGGGTTATGGCGAT 59.076 61.111 0.00 0.00 0.00 4.58
1989 4628 3.788145 CGGTGGGGGTTATGGCGA 61.788 66.667 0.00 0.00 0.00 5.54
1990 4629 3.114825 ATCGGTGGGGGTTATGGCG 62.115 63.158 0.00 0.00 0.00 5.69
1991 4630 1.228154 GATCGGTGGGGGTTATGGC 60.228 63.158 0.00 0.00 0.00 4.40
1992 4631 1.070786 CGATCGGTGGGGGTTATGG 59.929 63.158 7.38 0.00 0.00 2.74
1993 4632 1.597027 GCGATCGGTGGGGGTTATG 60.597 63.158 18.30 0.00 0.00 1.90
1994 4633 2.814835 GGCGATCGGTGGGGGTTAT 61.815 63.158 18.30 0.00 0.00 1.89
1995 4634 3.472726 GGCGATCGGTGGGGGTTA 61.473 66.667 18.30 0.00 0.00 2.85
2000 4639 4.530857 GAGGTGGCGATCGGTGGG 62.531 72.222 18.30 0.00 0.00 4.61
2001 4640 3.019003 AAGAGGTGGCGATCGGTGG 62.019 63.158 18.30 0.00 0.00 4.61
2002 4641 1.811266 CAAGAGGTGGCGATCGGTG 60.811 63.158 18.30 0.00 0.00 4.94
2003 4642 1.827399 AACAAGAGGTGGCGATCGGT 61.827 55.000 18.30 0.00 0.00 4.69
2004 4643 0.174845 TAACAAGAGGTGGCGATCGG 59.825 55.000 18.30 0.00 0.00 4.18
2005 4644 1.135083 AGTAACAAGAGGTGGCGATCG 60.135 52.381 11.69 11.69 0.00 3.69
2019 4677 2.038033 GCCCAAGGTAGACACAGTAACA 59.962 50.000 0.00 0.00 0.00 2.41
2043 4701 2.159296 TGGACGAACACGATATGAGTGG 60.159 50.000 11.29 0.00 43.41 4.00
2094 4752 1.213296 ACCCAATACTCGGCCTCATT 58.787 50.000 0.00 0.00 0.00 2.57
2095 4753 1.134098 CAACCCAATACTCGGCCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
2130 4788 0.881118 CGCAGCCATAAACACTTGGT 59.119 50.000 0.00 0.00 35.34 3.67
2137 4795 0.243636 AAGTTGCCGCAGCCATAAAC 59.756 50.000 3.27 0.00 38.69 2.01
2140 4798 0.322456 AAGAAGTTGCCGCAGCCATA 60.322 50.000 3.27 0.00 38.69 2.74
2147 4805 1.916697 GCTCCTGAAGAAGTTGCCGC 61.917 60.000 0.00 0.00 0.00 6.53
2204 4862 1.080093 GACGGCGGAGACAATGTCA 60.080 57.895 16.38 0.00 34.60 3.58
2209 4867 1.654954 GAGCTAGACGGCGGAGACAA 61.655 60.000 13.24 0.00 27.25 3.18
2210 4868 2.045242 AGCTAGACGGCGGAGACA 60.045 61.111 13.24 0.00 27.25 3.41
2213 4871 2.548295 GGAGAGCTAGACGGCGGAG 61.548 68.421 13.24 6.60 37.29 4.63
2214 4872 2.516460 GGAGAGCTAGACGGCGGA 60.516 66.667 13.24 0.00 37.29 5.54
2215 4873 3.955101 CGGAGAGCTAGACGGCGG 61.955 72.222 13.24 0.00 37.29 6.13
2216 4874 4.615834 GCGGAGAGCTAGACGGCG 62.616 72.222 4.80 4.80 44.04 6.46
2250 4908 1.926510 CTCAATATGCTTCGTGCGACA 59.073 47.619 0.00 0.00 46.63 4.35
2282 4940 0.733909 TCATCTGCTCACGCACGAAG 60.734 55.000 0.00 0.00 42.25 3.79
2301 4959 0.966920 ACACCGAAATGTCCGAGAGT 59.033 50.000 0.00 0.00 0.00 3.24
2316 4974 1.074775 TGGGGACATGCAAGACACC 59.925 57.895 5.72 5.72 33.40 4.16
2375 5033 1.873270 TACGTCACCTGCTCACGCAT 61.873 55.000 0.00 0.00 46.74 4.73
2376 5034 1.873270 ATACGTCACCTGCTCACGCA 61.873 55.000 0.00 0.00 45.60 5.24
2377 5035 1.140407 GATACGTCACCTGCTCACGC 61.140 60.000 0.00 0.00 37.02 5.34
2378 5036 0.861866 CGATACGTCACCTGCTCACG 60.862 60.000 0.00 0.00 39.48 4.35
2379 5037 0.450583 TCGATACGTCACCTGCTCAC 59.549 55.000 0.00 0.00 0.00 3.51
2380 5038 0.450583 GTCGATACGTCACCTGCTCA 59.549 55.000 0.00 0.00 0.00 4.26
2381 5039 0.733729 AGTCGATACGTCACCTGCTC 59.266 55.000 0.00 0.00 0.00 4.26
2382 5040 0.452184 CAGTCGATACGTCACCTGCT 59.548 55.000 0.00 0.00 0.00 4.24
2383 5041 1.140407 GCAGTCGATACGTCACCTGC 61.140 60.000 4.87 4.87 39.21 4.85
2384 5042 0.861866 CGCAGTCGATACGTCACCTG 60.862 60.000 0.00 0.00 38.10 4.00
2385 5043 1.428219 CGCAGTCGATACGTCACCT 59.572 57.895 0.00 0.00 38.10 4.00
2386 5044 1.585521 CCGCAGTCGATACGTCACC 60.586 63.158 0.00 0.00 38.10 4.02
2387 5045 1.585521 CCCGCAGTCGATACGTCAC 60.586 63.158 0.00 0.00 38.10 3.67
2388 5046 2.767445 CCCCGCAGTCGATACGTCA 61.767 63.158 0.00 0.00 38.10 4.35
2389 5047 2.025727 CCCCGCAGTCGATACGTC 59.974 66.667 0.00 0.00 38.10 4.34
2390 5048 3.524606 CCCCCGCAGTCGATACGT 61.525 66.667 0.00 0.00 38.10 3.57
2404 5062 2.806945 TGTGATGATTCAACTCCCCC 57.193 50.000 0.00 0.00 32.48 5.40
2405 5063 3.624777 ACATGTGATGATTCAACTCCCC 58.375 45.455 0.00 0.00 32.48 4.81
2406 5064 5.240183 CCATACATGTGATGATTCAACTCCC 59.760 44.000 9.11 0.00 32.48 4.30
2407 5065 5.824624 ACCATACATGTGATGATTCAACTCC 59.175 40.000 9.11 0.00 32.48 3.85
2408 5066 6.932356 ACCATACATGTGATGATTCAACTC 57.068 37.500 9.11 0.00 32.48 3.01
2409 5067 7.500227 CCTAACCATACATGTGATGATTCAACT 59.500 37.037 9.11 0.00 32.48 3.16
2410 5068 7.498900 TCCTAACCATACATGTGATGATTCAAC 59.501 37.037 9.11 0.00 32.48 3.18
2411 5069 7.572814 TCCTAACCATACATGTGATGATTCAA 58.427 34.615 9.11 0.00 32.48 2.69
2412 5070 7.135591 TCCTAACCATACATGTGATGATTCA 57.864 36.000 9.11 0.00 0.00 2.57
2413 5071 7.879677 TGATCCTAACCATACATGTGATGATTC 59.120 37.037 9.11 0.00 0.00 2.52
2414 5072 7.748677 TGATCCTAACCATACATGTGATGATT 58.251 34.615 9.11 4.58 0.00 2.57
2415 5073 7.320384 TGATCCTAACCATACATGTGATGAT 57.680 36.000 9.11 0.00 0.00 2.45
2416 5074 6.745794 TGATCCTAACCATACATGTGATGA 57.254 37.500 9.11 0.00 0.00 2.92
2417 5075 7.991084 AATGATCCTAACCATACATGTGATG 57.009 36.000 9.11 8.27 0.00 3.07
2418 5076 8.443176 AGAAATGATCCTAACCATACATGTGAT 58.557 33.333 9.11 0.00 0.00 3.06
2419 5077 7.805163 AGAAATGATCCTAACCATACATGTGA 58.195 34.615 9.11 0.00 0.00 3.58
2420 5078 8.455903 AAGAAATGATCCTAACCATACATGTG 57.544 34.615 9.11 0.00 0.00 3.21
2424 5082 9.967451 TTGTTAAGAAATGATCCTAACCATACA 57.033 29.630 0.00 0.00 35.10 2.29
2427 5085 8.749354 GGTTTGTTAAGAAATGATCCTAACCAT 58.251 33.333 0.63 0.00 35.10 3.55
2428 5086 7.177744 GGGTTTGTTAAGAAATGATCCTAACCA 59.822 37.037 0.63 0.00 35.10 3.67
2429 5087 7.177744 TGGGTTTGTTAAGAAATGATCCTAACC 59.822 37.037 0.63 0.00 35.10 2.85
2430 5088 8.027189 GTGGGTTTGTTAAGAAATGATCCTAAC 58.973 37.037 0.63 0.00 36.09 2.34
2431 5089 7.177744 GGTGGGTTTGTTAAGAAATGATCCTAA 59.822 37.037 0.63 0.00 0.00 2.69
2432 5090 6.661805 GGTGGGTTTGTTAAGAAATGATCCTA 59.338 38.462 0.63 0.00 0.00 2.94
2433 5091 5.480422 GGTGGGTTTGTTAAGAAATGATCCT 59.520 40.000 0.63 0.00 0.00 3.24
2434 5092 5.480422 AGGTGGGTTTGTTAAGAAATGATCC 59.520 40.000 0.63 0.00 0.00 3.36
2435 5093 6.208599 TGAGGTGGGTTTGTTAAGAAATGATC 59.791 38.462 0.63 0.00 0.00 2.92
2436 5094 6.074648 TGAGGTGGGTTTGTTAAGAAATGAT 58.925 36.000 0.63 0.00 0.00 2.45
2437 5095 5.450453 TGAGGTGGGTTTGTTAAGAAATGA 58.550 37.500 0.63 0.00 0.00 2.57
2438 5096 5.782893 TGAGGTGGGTTTGTTAAGAAATG 57.217 39.130 0.63 0.00 0.00 2.32
2439 5097 5.838521 ACATGAGGTGGGTTTGTTAAGAAAT 59.161 36.000 0.00 0.00 0.00 2.17
2440 5098 5.205056 ACATGAGGTGGGTTTGTTAAGAAA 58.795 37.500 0.00 0.00 0.00 2.52
2441 5099 4.798882 ACATGAGGTGGGTTTGTTAAGAA 58.201 39.130 0.00 0.00 0.00 2.52
2442 5100 4.447138 ACATGAGGTGGGTTTGTTAAGA 57.553 40.909 0.00 0.00 0.00 2.10
2443 5101 5.508994 GGAAACATGAGGTGGGTTTGTTAAG 60.509 44.000 0.00 0.00 35.08 1.85
2444 5102 4.342665 GGAAACATGAGGTGGGTTTGTTAA 59.657 41.667 0.00 0.00 35.08 2.01
2445 5103 3.892588 GGAAACATGAGGTGGGTTTGTTA 59.107 43.478 0.00 0.00 35.08 2.41
2446 5104 2.698274 GGAAACATGAGGTGGGTTTGTT 59.302 45.455 0.00 0.00 35.08 2.83
2447 5105 2.091333 AGGAAACATGAGGTGGGTTTGT 60.091 45.455 0.00 0.00 35.08 2.83
2448 5106 2.597455 AGGAAACATGAGGTGGGTTTG 58.403 47.619 0.00 0.00 35.08 2.93
2449 5107 2.965147 CAAGGAAACATGAGGTGGGTTT 59.035 45.455 0.00 0.00 37.44 3.27
2450 5108 2.091333 ACAAGGAAACATGAGGTGGGTT 60.091 45.455 0.00 0.00 32.24 4.11
2451 5109 1.499007 ACAAGGAAACATGAGGTGGGT 59.501 47.619 0.00 0.00 32.24 4.51
2452 5110 2.292828 ACAAGGAAACATGAGGTGGG 57.707 50.000 0.00 0.00 32.24 4.61
2453 5111 4.256920 CTCTACAAGGAAACATGAGGTGG 58.743 47.826 0.00 0.00 32.24 4.61
2454 5112 4.899502 ACTCTACAAGGAAACATGAGGTG 58.100 43.478 0.00 0.00 32.24 4.00
2455 5113 5.071788 TCAACTCTACAAGGAAACATGAGGT 59.928 40.000 0.00 0.00 32.24 3.85
2456 5114 5.551233 TCAACTCTACAAGGAAACATGAGG 58.449 41.667 0.00 0.00 32.24 3.86
2457 5115 5.641209 CCTCAACTCTACAAGGAAACATGAG 59.359 44.000 0.00 0.00 32.24 2.90
2458 5116 5.306937 TCCTCAACTCTACAAGGAAACATGA 59.693 40.000 0.00 0.00 35.01 3.07
2459 5117 5.409826 GTCCTCAACTCTACAAGGAAACATG 59.590 44.000 0.00 0.00 39.55 3.21
2460 5118 5.552178 GTCCTCAACTCTACAAGGAAACAT 58.448 41.667 0.00 0.00 39.55 2.71
2461 5119 4.500887 CGTCCTCAACTCTACAAGGAAACA 60.501 45.833 0.00 0.00 39.55 2.83
2462 5120 3.988517 CGTCCTCAACTCTACAAGGAAAC 59.011 47.826 0.00 0.00 39.55 2.78
2463 5121 3.640029 ACGTCCTCAACTCTACAAGGAAA 59.360 43.478 0.00 0.00 39.55 3.13
2464 5122 3.005472 CACGTCCTCAACTCTACAAGGAA 59.995 47.826 0.00 0.00 39.55 3.36
2465 5123 2.557056 CACGTCCTCAACTCTACAAGGA 59.443 50.000 0.00 0.00 35.56 3.36
2466 5124 2.352814 CCACGTCCTCAACTCTACAAGG 60.353 54.545 0.00 0.00 0.00 3.61
2467 5125 2.352814 CCCACGTCCTCAACTCTACAAG 60.353 54.545 0.00 0.00 0.00 3.16
2468 5126 1.616865 CCCACGTCCTCAACTCTACAA 59.383 52.381 0.00 0.00 0.00 2.41
2469 5127 1.254026 CCCACGTCCTCAACTCTACA 58.746 55.000 0.00 0.00 0.00 2.74
2470 5128 0.108756 GCCCACGTCCTCAACTCTAC 60.109 60.000 0.00 0.00 0.00 2.59
2471 5129 0.251653 AGCCCACGTCCTCAACTCTA 60.252 55.000 0.00 0.00 0.00 2.43
2472 5130 0.251653 TAGCCCACGTCCTCAACTCT 60.252 55.000 0.00 0.00 0.00 3.24
2473 5131 0.108756 GTAGCCCACGTCCTCAACTC 60.109 60.000 0.00 0.00 0.00 3.01
2474 5132 0.830444 TGTAGCCCACGTCCTCAACT 60.830 55.000 0.00 0.00 0.00 3.16
2475 5133 0.669625 GTGTAGCCCACGTCCTCAAC 60.670 60.000 0.00 0.00 33.61 3.18
2476 5134 1.669440 GTGTAGCCCACGTCCTCAA 59.331 57.895 0.00 0.00 33.61 3.02
2477 5135 2.280552 GGTGTAGCCCACGTCCTCA 61.281 63.158 0.00 0.00 45.52 3.86
2478 5136 2.577593 GGTGTAGCCCACGTCCTC 59.422 66.667 0.00 0.00 45.52 3.71
2479 5137 3.379445 CGGTGTAGCCCACGTCCT 61.379 66.667 0.00 0.00 45.52 3.85
2480 5138 3.688159 ACGGTGTAGCCCACGTCC 61.688 66.667 0.00 0.00 45.52 4.79
2481 5139 2.431942 CACGGTGTAGCCCACGTC 60.432 66.667 0.00 0.00 45.52 4.34
2482 5140 3.228759 ACACGGTGTAGCCCACGT 61.229 61.111 12.96 0.00 45.52 4.49
2483 5141 2.736995 CACACGGTGTAGCCCACG 60.737 66.667 14.30 0.00 45.52 4.94
2484 5142 1.959226 CACACACGGTGTAGCCCAC 60.959 63.158 14.30 0.00 45.65 4.61
2485 5143 2.423874 CACACACGGTGTAGCCCA 59.576 61.111 14.30 0.00 45.65 5.36
2514 5172 2.418368 TAGATTGGGTGCATCCACAC 57.582 50.000 21.13 15.70 45.77 3.82
2515 5173 3.668141 ATTAGATTGGGTGCATCCACA 57.332 42.857 21.13 10.88 43.88 4.17
2516 5174 4.311816 CAATTAGATTGGGTGCATCCAC 57.688 45.455 21.13 8.60 41.32 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.