>input_sequence_76683
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---------------------------ATGGCCAACTATAGCAGCTGCTTCCATACATCAATCATACTCTCGATGCTTCT
TCTCATATGTTTTGCTACCCATGCACAATGTAAGTTTCGAAAACCAACCGATCCACTTACTGTTATACCTCAGATGATTA
GTCTTTTCATTACTGATCTTCCATTATCGTTGAGTTAATGCATATGCTACGTATAACTTTTTTTGAGTTGTTTATAACTT
TTATTTCTTCCGAAGTTCTTACGGTTTTTCTGAGTGCTTGTGTATTTGTTTGCTGCTGTATCAGTTACTTGT--------
---------------------------------------------------------------------------TAGTT
GATAAGCAGAGACTAACGTGAAAC-----TGTTTTATG---TTCTATA---GGCAGAATCTTGGAAGACATGAAAGCAAT
TAGGGTCAATATACCAGGTGGTCTGTGCGCCCGTGCTCGGGGCTGCAAAGACG------TATGCATATGTTGTTTAGTAA
AGGATTCCTGCTATGATTCATTTGATGAATGCCTGGCCGACTGTCCAAAAGCTTCTCCGTTAGACCCAGCGGCAGCGATG
AATCGTTCTCCATCACCATCCTATCTAATCTAG-----------------------------------------------
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>chr6A_1_TraesCS6A01G337500
ATCGGATTTTAACGAAGAAGCCAAGATGATGATGAGCATCCAATTGGCTTCGATCAAAGGGAGAAGAGTTCTGCACCGGG
ATAGGGTCTCTCGAGCACAGATACTCTAAAAGGACTACTTTGATCCCAAACCAGCTTTCCCTGGTGAATGGTTTCGTCAA
CGGTTCCATATGCAGAAACCAGTGTTCTTGCGCGCGTCATGGAGGGAGTGGAGGCGCATGATTAATTCCCTGCAGATGCA
TCAGAATCTTCGAGATCATTAGGTACACGCACAACTATTCAGTGATCTTGTGAAGCATATGTGGACCCACAACGGAAACC
AAATAGCTAATGTTTGAATTGTGGACTTAAAATAAATTTTATGTTCGAACATATATTTTTCGCTACCAATAAATGTTTAT
TTTTTTGAACATCAGTACAGACACAAGCGCGCATATACACGTGCATACACTCACCCCTATGAACGCACACACGCACACCC
TACCCTTATGAGCACCTCCGAAAGACTGAGCCGGCATATCGTCTAGAAATTTACGAAGTCACCGTAGGCACCTCGTTGTC
GACGGAAACGTCTCCTCCCACTGAATGCGCATCGCCGGAAATTCTGAAATAAATTCATGAATAAATGCGAGCATCAAGAT
TTCAACTCTAGTGGGCTAGGGATACCACAGCCCCTCTAACCATCCAACCACAGGTTGGTTCACGTTTCTATGGACGTTTG
AAGTGCCGGATTTGGTGTATCGGATTTTGGATGCTCTCATTTCACTAGAGATTGTATAAGGAATGTCAAACCATATCACA
CAAATATATGTTAGCGGGTATGCTATTTATCTATATATGGAATACACAATGATTTTAACGGTCTGTTTTGATTGCACGCT
TTACTTCTTTCCTCTTTACCTCAAGTTGATTGGTGGGTATATTAGAACACCCCTCCCCTCCACAACAAAGTTACTGTGTT
ATAGACGCGTACCGGACAAGCCTAGATAG---------------------------------------------------
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----------------TAATTTTCTCCATGGCCAACTATAGCAGCTGCTTCCATACATCAATCATACTCTCGATGCTTCT
TCTCATATGTTTTGCTACCCATGCACAATGTAAGTTTCGAAAACCAACCGATCCACTTACTGTTATACCTCAGATGATTA
GTCTTTTCATTACTGATCTTCCATTATCGTTGAGTTAATGCATATGCTACGTATAACTTTTTTTGAGTTGTTTATAACTT
TTATTTCTTCCGAAGTTCTTACGGTTTTTCTGAGTGCTTGTGTATTTGTTTGCTGCTGTATCAGTTACTTGT--------
---------------------------------------------------------------------------TAGTT
GATAAGCAGAGACTAACGTGAAAC-----TGTTTTATG---TTCTATA---GGCAGAATCTTGGAAGACATGAAAGCAAT
TAGGGTCAATATACCAGGTGGTCTGTGCGCCCGTGCTCGGGGCTGCAAAGACG------TATGCATATGTTGTTTAGTAA
AGGATTCCTGCTATGATTCATTTGATGAATGCCTGGCCGACTGTCCAAAAGCTTCTCCGTTAGACCCAGCGGCAGCGATG
AATCGTTCTCCATCACCATCCTATCTAATCTAGTCATATGGCTTTTGAAGGATGATGCCGGATGTGCTCATAAATAATTT
ATTATAATAAATAATATCATAATATTTGCTTTACAATAGTTGATAAGTTTTATATCAA----TGTTCTTTACGAGT----
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----------------------------------------TAATTAGTTTTGTTGAATATATGTATTAAGATCTTTTCCT
AATAAACCCCGCCTCCTGTTTCCTTGTATAATTGAGGCCGTGGGCTACATCCTCTTTCCTTATATACATGCGTGTATGCA
CCCAATCTAATTAAGAGTCGCATTGCCTTCCAATATGGTATCAGTTTTCCGACCCCGATCCTAAACCTAAGTCTTCCGCT
CCTGTCGCCGCCACACCATCTAGGTCGCCGCCGCCGCACCACCTAGGTCGCCGCCGC-----------------------
TGCACCTGCCGCCACTCCTTCCCCTAGCCGCCGCAGCCCACCCTACCCTACTCTCTCCTCCTCCCAATCGCCATAACCCC
CACCGATCGCCAC-------------------CTCTTGTTACTGTGTCTACCTTGGGCCGCCACTCATATCGTGTTCGTC
CAAACGACAACCCATGGTGTCCCGATCCAGTAATGAGGCCGAGTATTGGGTTGTGGCTAACGCCATCACCAAGTGTTTAT
GGCTGCGGCAACTTCTTCAGGAGCTGCACGTTGGCGTGGCCAAGGCTACTGTTGTCTACTGTGACATTGTCTCCGCCGTC
TAGCTCTCCGCCAACCCCGTTCATCATTGTCGCACGAAGCATATTGAGCTCGACATTCACTTCGTGCGTGAGCAGATGAC
TCTCGGACATTTCGGTGTCTTGCATGTCCCCACTGCTCAGCAATTCGCCGATGTCATGACAAAGGGGTTACCATGCGTGA
GCAGGTGACGTATCGACTGCGGGGGGAGTTGAATCATCACATGTATGGTTAGGATCATTTCTTAACAAACCCACCTCATG
TTTCCTTGTAGAGTTGAGGACGTGGGCTACACCGTGTGTGTGTGCACGCGCGTGTGGATGCACCCAATCTAATTGGAAGT
TGC
>chr6B_4
GGATTCG---AACGAAGAAGCCAAGATGATGGTGAGCATCCAATTGGCTTCGATCAAAGGGAGAAGAGTTCTGCATCGGG
ATAGGGTCTCTGGAGCACAAATACTCTAAAAGGACTACTTTGATCCAAAACCTGCTTTCCCTGGTGAATGGTTTCGTCAA
CGCTTCCATATGCGGAAACCATTGTTCTTGCGTGCATGGTGGAGGGAGTGGAGGCGCATGATATTCACGTGTTATACCTT
------------AGATGATTAGGTACACGCACAACTACTTAGTGATCTTGTGGAGCATATGTGGACCCACAACGGAAGCC
AAATAGCTAATGTTTCAATTGTGGACTTAAAATAAATTTTATGTTCGAACATATATTTTTCGCTACCAACAAATGTTTAT
TTACATGTG-----------------------ATATTCACGTGTATGATGGACGTGCATGGATTTGTATGGATTTGAAGA
TTTAGATTCCATGTTTGTGACTGTGTGGTATGCCATATGCGGGTCTGTTTGGCGATGTCCGCGGTCGTGACCGGGT----
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---------------------------------------------------------------GTTTCTACAGACGTTTG
AAGTGCCGGATTTTGTGTATCCAATTTTGGATGCTCTCATTTCACTAGAGATTGTATAAGGAATGCCAAACCATATCACA
CAAATATATGTTAGCAGGCATGCGATTTATCTATATATAGAATACACAATGATTTTAACGATCTGTTTTGATTGCACGCT
TTACTTCTTTCCTCTTTACCTCAAGTTGATTGGTGGGTATATTAGAACACCCCTCCCCTCCACAACAAAGTTACTGTGTT
ATAGACGCGTACCGGACAAGCCTAGATAG---------------------------------------------------
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----------------TAATTTTCTCCATGGCCAACTATAGCAACTGCTTCCATACATCAATCATACTCTCGATGCTTCT
TCTCATATGCTTTGCTACCCATGCACAATGTATGTTTCGAAAACCAACCGATCCACTTACTGTTATACCTCAGATGATTA
GTCTTTTCATTACTGATCTTCCATTATCGTCGAGTTAATGCATATGCTACGTATAACTTTTTTTGAGTTGTTTATAACTT
TTATTTCTTCTGAAGTTCATACGGTTTTTCTGAGTGCTTGTGTATTTGTTTGCTGCTGCATCAATTACTTGTTAC-----
---------------------------------------------------------------------------TAGTT
GATAAGCAGAGATTAACGTGAAAC-----TGTTTTATG---TTCTATAGGCGGCAGAATCCTGGAAGACATGAAATCAAT
TAGGGTCAATATACCAGGTGGTCTGTGCGCCCGTGTTCGGGGCTGCAAAGACG------TATGCATATGTTGTTTAGTAA
AGGATTCCTGCTATGATTCATTTGATGAATGCCTGGCCGACTGTCCAAAAACTTCTCCGTTAGACCCAGCGGCAGCGATG
AGTCGTTCTCCATCACCATCCTATCTAATCTAGTCATATGGCTTTTGAAGGATGATGCCGGATGTGCTCATGAATAATTT
ATTATAATAAATAATATCATAATATTTGCTTTACAATAGTTGATAACTTATATATCCA----TGTTCTCTACAAGTTAAT
TAGTTGGCGGCTGCTACAGATAAGTCGGATGATTTCCTAGAGAAATCATCCGCCTAGCCCGCCGTCCGATCTGACCGAGG
GTGGCCGTTCAATCGCCGCATACGAAGCCGTTTTCTTTCTCTCTGTTCTTCCATCCTGCACCCCGTAGCATCTGCAGCAA
AAAAAAAAGCTTCAACGCAGCTGCTCCCATGGCAGCACCGCGCGGCGCGGCGCCCGGCGGTGCTTCACTGCAACCCCGGC
GATGCCCCAATGCACCCCGGTGCTTCAATGCAACCCCGAGAAAGCTTCAACGACCCCAACGGTGCTTCACTATAGCTCCG
GCTCGCTTCATTGCAGCTCCGCCGCCGGCGATTGCAGCACCAGCAGCACCGCCCTCTGAGGTTGCACCGCAGCACTGTGG
ACATGGGCGAGTTTCTATGTCGCAACACCGAGTTCGTCGACGAGCGCCGCCATTCCAGCGAACGGCCGCCTCCCCTGCGT
GTTGCGTCGCCCCCTCGGGGTTGCAGCACTGTGGCGGTGCGCTCGTAGGGCTTCATTGCCCTTCATTTGCGGGTGGGCAG
CAGGCAGTGTCGCCGTCGCTCCTGGTTCGCCGCACCGTGGAGTGAGAGGGGCGATGTCCGCCATGGAAGCCTCTCTCCTC
TGTGGTGTGTGAAGATGCAGAGACGGGGAACGAATCCGACGGGGAAAGGGGAAAATGAGTGGGGAGAACGAGTGGAGGAG
AATAGAGGTGGAAGAGATAAGGCTGGCTGTGGGCGGTGGATGGGCCCAGTGGACACGTGTCGAGTCCTGCGTGCGGCTTA
TGTTTGTTTGTTTTAATCCGATTGAAAACAAACGTTTTCCTAATTAGTTTTGTTGAATATATGTATTAAGATATTTTCCT
AATAAACCCCGCCTCCTGTTTCCTTGTATAATTGAGGCCGTGGGCTACATCCTATACA--TATATACGTGCGTGTATGTA
TCCAATCTAATAGAGAGTTGCATTGCCTTCCGATATAGTATCAGTTTTCCTACCCCGATCCTAAACTTAAGTCTTTTGCT
CCCGTCG-----------------------CCGCCGCACCATCTAGGTCGCCGCCGC-----------------------
TGCACCCGCCGCCGCTCCTTCCCCTAGCCGCCGCAGCCAACCCTACCCTACTCTCTCCTCCTCCC---------------
----GATCATTATAACCCCCACCGATCACCAACTCTGGTTACCGTGTCTACCTTGGGCCGTCACTCATATCATGGTCGTC
CAAACGACAACCCGTGGTGTCCCGATCCAGTGCTGAGGCCGAGTATCGGGTTGTGGCTAACACCATCGCCAAGTCTTCAT
GGCTCCGGCAACTTCTTCAGGAGCTGCACCTTGGCGTGGCCAAGGCTATTGTTGTCTACGGCGACAACGT----------
---CTCTCCGCTAACCCCGTTCATCATCGTCGCACGAAGCATATTGAACTCGACATTCATTTCGTGCATGAGCAGATGGC
TCTCAGACATTTCCGTGTCTTGCATGTCCCCACTGCTCAGCAATTCGCCGATGTCATGACAAAGGGGTTACCGATGC---
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>chr6D_706
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-----------------------------------------------------------------TTCTACGGACGTTTG
AAGTGCCAGATTTGGTGTATCCGATTTTGGATGCTCTCATTTCACTAGATATTGTATAAGGAATGCCAAACCATATCACA
CAAATATATGTTAGCAGGCATGCTATTTATCTATACATAGAATACACAATGATTTTAACGATCTGTTTTGATTGCACGCT
TTACTTCTTTCCTCTTTACCTCAAGTTGATTGGTGGGTATATTAGAACACCCCTCCCCTCCACAACAAAGTTACTGTGTT
ATAGACGCGTATCGGACAAGCCTAGATAGTAATTTTCTGAGGTAATTACACCACTGGTGCTTGAACTTGCCATGAATGTG
CACTTTAGTGCCTGAACTTGAAAAATACATTGAACTGGTTCTATAACTTGGCATGGACGTGCAAATACGGTTCACATCTT
ATATGTATACGTCCACGGCCCTGACGAGGCACCCCAAGTGTCCTGGTTTATGTGGAAAAATCCCTGGAATTGTTTTCTCC
TTACATAAAAGACCTCGGTGAGAAACAAATATATATTCACACGCTTGTGGTGAGGGATCGAACATGTTACCTGTACCTTC
ATGTGGGAGTGGCTAACCAGCAGACAAGGTGAAATTTGTTGTCATATATATATATATATTCACACGCTTTTTATACAGCA
GGTTGAACAACGTAAACAAATTAATTTATTCGATCAAAAATAGTGCCGGGTCAATTATTTGAACCTGCACCCTAATATTA
TATAGCGGCCACAAATACCACTCCAACCAAGAACATGTAATTTTACAAAGGATAAATTTCTCTTTATATAACACAATGCG
CTCGTGTGGGTAAAATGGATCATTTTCAACATTTCAGTTTTTTCCAGTTTTTGTAAAACTATGTAAATTATAATTGTGTG
TTATAAATGATATATATAATTAAATTAAAGTACATTAAAAATTCATATGATTTAATAAAATATCTCCACAAATAATTTTA
AAAATAAAAATATTAAATATTAAATTAAATTAATTTTACAATTTTAAAAGTGCTCACATTTTTAATGAAATATTAAAATA
ATTTAAGAAAGTTTTGTATATTTAAATAGATTCCCATATAATTCTAAACATTTCCACGTTATAAATAAAATATTTATGTA
GTACATTAAAGTGTTCATACTTTAAGAAAAAAAGTGTTGTTTTAAAAAGTTTATATAATATATAAAAGTTTGTGTGTTTT
AAAAAAAAGCGAACCTAGTGCACCCTCAGATTGCAGATCCTCACATGAATAATATTTGAATAAAATAGACATTTTTCTAA
TTCATAAATATTTAAATTGTATGTATATGTTTTAAAATAACACATGAATTATTTTTAAAATGACATGTAAAATTTAAATT
CTTTTTGAAATCATGTTTGTTATATAGTCATAAATATTAATTATACTTTAGAAACATGAGACCTTTTTGGTAGAAGTGGT
ATCCAAGGCTGATATATAACATTTTGTCGGATGTTTGGATCACAAACCCGACACTATTTTTTGCTGGATTATTAAATTCC
TTTAATTTATGTTGTTTCGCCTAGTGTACATAATGGTCATGAATCCAGTTTTGACTATACAACTGTGCTGCGGTCAACTG
GCTAGCCGCGAGCTAACAGTAGTTCACTGGTTCGATTCCCTGCCAGTCTAGCTTTCAGTTTTATTTCAGCCCTTTATCTG
TGAGGTCCTATTTCTAAGAAAATAGTTTTAAGGGGTTTTCCAAAAAATAGGCCGCACGCCCTGCCATTCAGTAGCTGACA
GCGGGCCCCATGCCACGCCGGAATGCCTTGTCAGCATCGTGTGCGTATGCTGAAGAGATTTGAACTGTATTTGCACGCTC
ATGCCAAGTTATGGAACTAGTTCAATGTATTTTTCAAGTTTAGGCACTAAAGTGAACATCCATGACAAGTTCAAGCACCA
ACGGTGTATTTACCTCTAATTTTCTCCATGGACAACTATAGCAACTGCTTCCATACATCAATCATACTCTCGATGCTTCT
TCTCATATGCTTTGCTACCCATGCACAATGTAAGTTTCGAAAACCAACCGATCCACTTACTGTTATACCTCAGATGATTA
GTCTTTTCATTACTGATCTTCCATTATCGTTGAGTTAATGCATATGCTACGTATAACTTTTTTTGAGTTGTTTATAACTT
TTATTTCTTCCGAAGTTCTTATGGTTTTTCTGAGTGCTTGTGTATTTGTTTGCTGCTGTATCAGTTACTTGTTACTCCCT
CCGTCCCATAATGTAAGATGTCTTTTGATACTACGCTAGTGTCAGAAAACGTCTTATATTATGAGACAGAGGGAGTAGTT
GATAAGCAGAGATTAATGTGAAAC-----TGTTTTATG---TTCTATAGGCGGCAGAATCTTGGAAGACATGAAATCAAT
TAGGGTCAATATACCAGGTGGTCTGTGCGCCCGTGTTCGGGGCTGCAAAGACG------TATGCATATGTTGTTTAGTAA
AGGATTCCTGCTATGATTCATTTGATGAATGCCTGGCCGACTGTCCAAAAACTTCTCCGTTAGACCCAGCGGCAGCGATG
AATCGTTCTCCATCACCATCCTATCTAATCTAGTCATATGGCTTTTGAAGGATGATGCCGGATGTGCTCATGAATCATTT
ATTATAATAAATAATATCCTAATATTTGCTTTACAATAGTTGATAAGTTATATATCAA----TGTTCTTTACGAGT----
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----------------------------------------TAATTAGTTTTGTTGAATATATGTATTAAGATCTTTTTCT
AATAAACCCCGCCTCCTGTTTCCTTGTATAATTGAGGCCATGGGCTACATCCTGTACA--TATATACGTGCGTGTATGTA
TCCAATCTAATTGAGAGTTGCATTGCCTTCCGATATGGTATCAGTTTCCCTACCCCGATCCTAAACCTAAGTCTTCCGCT
CCTGTCG-----------------------CCGCCGCACCATCTAGGTCGCCGCCGCCGCACCACCTAGGTCGCCGCCGC
TGCACCTGCCGCCACTCCTTCCCCTAGCCGCTGCAGCCCACCCTACCCTACTCTCTCCTCCTCCC---------------
----GATCGCCAC-------------------CTCTGGTTACTGTGTCTACATTGGGCCGTCACTCATATCGTGGTCGTC
CAAACGACAACCCATGGTGTCCCGATTCAGTGTTGAGGCCGAGTATCGGGTTGTGGCTAACGCCATCGCCAAATCTTCAT
GGCTCCAACAACTTC--CAGGAGCTGCACCTTGGCGTGGCTAAGGCTACTGTTGTCTACTGCGACAACGT----------
---CTCTCCGCCAACCCCGTTCATCATCGCCGCACGAAGCATATTGAGCTCGACATTCATTTCGTGCGTGAGCAGATGGC
TCTCGGACATTTTCGTGTATTGCATCTCCCCACTGCTCAGCAATTCGCCGATGTCATTACAAAGGGGTTACC--------
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>chr3D_1167
GTTATA--------------------------------------------------------------------------
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--------------------------------------TGCAAATGCTATGTATATCTTATTTTTTATTTGTGTATACTT
TTATTTCTTCAGGAGTTCTTACGGTTTTTATTCGTGATTCTGCAT---TTTTTTTATGCATCAGTTATTTGTTAC-----
---------------------------------------------------------------------------TACTA
GATAACCAGAGACTAGTATGAATATTAATTGTTTTATCATCTTCTATA---GGCAGAATCTTGGAAGACGTCGAAAACGT
TAAGATCAAGTT---AGATGGTCTGTGCGCCCGCGATCCAAACTGCAAAAACTCTTCGTTGTGTTTCTGTTGTTTTGCAA
ACCATCTTTGTTATCCTTCTTTGGATGATTGCATGGTCGGCTGCCGAAATGCTTCTCCGTTAGACCCGGCGGCAGCGATG
ATACGTTCTCCATCACCCTCCTATCTAATCTAGTCATATGGCTTTTTAAGGATGGTGCCATATGTGCTCATGAATAATTT
AGTGTAATAAACAATGTTGCTATATTTACTTTTCAAGAGTTGAGAAGTTATATAATTATGACTGTTCATTATAAAT----
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----------------------------------------TAATTACTTATGT---------------------------
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---
>SNPs
S-SSS-SSSS---------------------S-------------------------------------------S----
-----------S-------S--------------------------S-----S---------------------------
--S----------S-------S----------S--S-SS-----------------------SSSSS-SSSSS-S-SSSS
SSSSSSSSSSSS----S--------------------S-S------------S------------------------S--
---------------S-----------------------------------------------------S----------
--SSS--SSSSSSSSSSSSSSSSSSSSSSSSS----S------S--SSSSSSSSSS-SSS--SSSSSSSSSSSSSS-SSS
-SSSSS-SSS-SSSSSSSSSSSSSSSS-SSSSSSSSSSS--SS-SSSSS-SSSSSSSSS-S-S--S-SS---SS--SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------
---------------------S-------------------------------------------S--------------
---------------S--S-------------------S---------------------S-------------------
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-------------------------------------------S------------------------------------
---------S----------------------------------------------------------------------
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---------------------------------------------------------------------------S----
-----------------------------------S--------------------------------------------
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-----------------------------------------------------------------------S--------
-------------------------------------------------S------------------------------
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-----------------------------------------------------S-SSSSS-------S----------S-
S-----------S-----S------------S------------------S-----------------------------
-------SSSSSSSSSSSSSSSSSSSSSSS-----------S--------------------------------------
-----------------------------------------------------------------SSSSSSSSSSSSSSS
SSSS--------------------------------S-----------------------S-------------S-----
-------------------------------SS-------------S--------------------S------S--S--
----S------------------------S-------------------------------S----SS--SSSSSSSSSS
SSS------------------------S-------------------------------S------------------S-
-------------S----------------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_470
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--------------------------------------------------TCACCCCTATGAACGCACAC----------
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>reverse_4413
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------------AAGAGTCGCATTGCCTTCCA------------------------------------------------
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