Multiple sequence alignment - TraesCS6A01G337400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G337400 chr6A 100.000 2064 0 0 1 2064 571639402 571641465 0.000000e+00 3812.0
1 TraesCS6A01G337400 chr6A 100.000 342 0 0 2253 2594 571641654 571641995 1.310000e-177 632.0
2 TraesCS6A01G337400 chr6A 93.023 172 12 0 1674 1845 571641017 571641188 4.290000e-63 252.0
3 TraesCS6A01G337400 chr6A 93.023 172 12 0 1616 1787 571641075 571641246 4.290000e-63 252.0
4 TraesCS6A01G337400 chr6A 92.593 162 11 1 293 454 571639579 571639739 5.580000e-57 231.0
5 TraesCS6A01G337400 chr6A 92.593 162 11 1 178 338 571639694 571639855 5.580000e-57 231.0
6 TraesCS6A01G337400 chr6A 93.913 115 7 0 1731 1845 571641016 571641130 9.540000e-40 174.0
7 TraesCS6A01G337400 chr6A 93.913 115 7 0 1615 1729 571641132 571641246 9.540000e-40 174.0
8 TraesCS6A01G337400 chr6A 92.982 57 4 0 1789 1845 571641016 571641072 1.650000e-12 84.2
9 TraesCS6A01G337400 chr6A 92.982 57 4 0 1615 1671 571641190 571641246 1.650000e-12 84.2
10 TraesCS6A01G337400 chr6D 95.074 2030 66 11 1 2009 426884145 426886161 0.000000e+00 3164.0
11 TraesCS6A01G337400 chr6D 93.567 342 22 0 2253 2594 426886587 426886928 6.400000e-141 510.0
12 TraesCS6A01G337400 chr6D 93.210 162 10 1 178 338 426884451 426884612 1.200000e-58 237.0
13 TraesCS6A01G337400 chr6D 89.634 164 14 3 293 454 426884334 426884496 3.380000e-49 206.0
14 TraesCS6A01G337400 chr6D 92.913 127 9 0 1674 1800 426885774 426885900 4.410000e-43 185.0
15 TraesCS6A01G337400 chr6D 93.043 115 8 0 1731 1845 426885773 426885887 4.440000e-38 169.0
16 TraesCS6A01G337400 chr6D 96.154 52 2 0 1626 1677 426885949 426886000 4.600000e-13 86.1
17 TraesCS6A01G337400 chr6B 96.844 1109 31 2 679 1787 642347504 642348608 0.000000e+00 1851.0
18 TraesCS6A01G337400 chr6B 93.306 732 35 2 1 718 642346775 642347506 0.000000e+00 1068.0
19 TraesCS6A01G337400 chr6B 94.152 342 18 2 2253 2594 642349227 642349566 1.060000e-143 520.0
20 TraesCS6A01G337400 chr6B 92.262 336 25 1 1674 2009 642348438 642348772 2.340000e-130 475.0
21 TraesCS6A01G337400 chr6B 92.593 162 11 1 178 338 642347081 642347242 5.580000e-57 231.0
22 TraesCS6A01G337400 chr6B 89.024 164 15 3 293 454 642346964 642347126 1.570000e-47 200.0
23 TraesCS6A01G337400 chr6B 93.913 115 6 1 1615 1729 642348495 642348608 3.430000e-39 172.0
24 TraesCS6A01G337400 chr6B 94.737 57 3 0 1615 1671 642348552 642348608 3.560000e-14 89.8
25 TraesCS6A01G337400 chr6B 100.000 35 0 0 2021 2055 642348759 642348793 5.990000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G337400 chr6A 571639402 571641995 2593 False 592.640000 3812 94.502200 1 2594 10 chr6A.!!$F1 2593
1 TraesCS6A01G337400 chr6D 426884145 426886928 2783 False 651.014286 3164 93.370714 1 2594 7 chr6D.!!$F1 2593
2 TraesCS6A01G337400 chr6B 642346775 642349566 2791 False 519.177778 1851 94.092333 1 2594 9 chr6B.!!$F1 2593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 158 0.951040 CTGACTGACTGAAACCGGCC 60.951 60.000 0.0 0.0 0.0 6.13 F
712 764 1.063717 CCATATTCCCCAAGCACCACT 60.064 52.381 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 1538 0.898326 TCAGTAGGCAGCTCCGTTGA 60.898 55.0 0.0 0.0 40.77 3.18 R
2466 2761 1.230635 AATCTTCGTTGCGTGCTGCT 61.231 50.0 0.0 0.0 46.63 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 94 3.823873 TCCTGACAACAACAAACAACACT 59.176 39.130 0.00 0.00 0.00 3.55
144 157 1.569479 GCTGACTGACTGAAACCGGC 61.569 60.000 0.00 0.00 0.00 6.13
145 158 0.951040 CTGACTGACTGAAACCGGCC 60.951 60.000 0.00 0.00 0.00 6.13
150 163 1.376037 GACTGAAACCGGCCTCCTG 60.376 63.158 0.00 0.00 0.00 3.86
167 180 2.229543 TCCTGCAACATGCTTCATCAAC 59.770 45.455 3.78 0.00 45.31 3.18
176 189 4.083324 ACATGCTTCATCAACCAAACTACG 60.083 41.667 0.00 0.00 0.00 3.51
201 214 3.064900 AGGGCAAAGAAGACATGAGAC 57.935 47.619 0.00 0.00 0.00 3.36
206 219 3.653344 CAAAGAAGACATGAGACGGACA 58.347 45.455 0.00 0.00 0.00 4.02
229 242 5.640189 ATTCTGAATTGCTTCCTGAACAG 57.360 39.130 0.00 0.00 30.80 3.16
230 243 2.816087 TCTGAATTGCTTCCTGAACAGC 59.184 45.455 0.00 0.00 36.49 4.40
231 244 2.555325 CTGAATTGCTTCCTGAACAGCA 59.445 45.455 0.00 0.00 44.43 4.41
240 255 4.378874 GCTTCCTGAACAGCAAACATACTC 60.379 45.833 0.00 0.00 35.95 2.59
245 260 3.987868 TGAACAGCAAACATACTCGAGAC 59.012 43.478 21.68 0.00 0.00 3.36
246 261 2.596452 ACAGCAAACATACTCGAGACG 58.404 47.619 21.68 9.15 0.00 4.18
271 286 5.620738 ACTTGCAGAGAAAGGATATGCTA 57.379 39.130 0.00 0.00 37.76 3.49
274 289 4.697514 TGCAGAGAAAGGATATGCTACAC 58.302 43.478 0.00 0.00 37.76 2.90
331 346 4.005650 ACATGAGACGAACAATGCTGAAT 58.994 39.130 0.00 0.00 0.00 2.57
391 406 5.118990 TGCAGAGAAAGGATATGCTACAAC 58.881 41.667 0.00 0.00 37.76 3.32
403 418 1.210722 TGCTACAACACAGAACCCACA 59.789 47.619 0.00 0.00 0.00 4.17
434 449 3.648067 AGGGACAAAGAAGACATGAGACA 59.352 43.478 0.00 0.00 0.00 3.41
587 602 3.744238 ATTTGGGTTTTCAGTTTCCCG 57.256 42.857 0.00 0.00 42.54 5.14
712 764 1.063717 CCATATTCCCCAAGCACCACT 60.064 52.381 0.00 0.00 0.00 4.00
1486 1538 3.252554 AGGAAGAAGACTGTGAGGAGT 57.747 47.619 0.00 0.00 0.00 3.85
1503 1555 0.900647 AGTCAACGGAGCTGCCTACT 60.901 55.000 0.00 0.00 0.00 2.57
1599 1651 1.024271 TGTGTTGCTGCTGAGGAAAC 58.976 50.000 0.00 0.00 30.29 2.78
1736 1788 5.995897 GGTACCTTATCAAGTCACTTGTGTT 59.004 40.000 17.27 6.54 41.66 3.32
1742 1794 7.011950 CCTTATCAAGTCACTTGTGTTTGTGTA 59.988 37.037 17.27 0.00 41.66 2.90
1743 1795 6.751514 ATCAAGTCACTTGTGTTTGTGTAA 57.248 33.333 17.27 0.00 41.66 2.41
1744 1796 6.751514 TCAAGTCACTTGTGTTTGTGTAAT 57.248 33.333 17.27 0.00 41.66 1.89
1746 1798 8.270080 TCAAGTCACTTGTGTTTGTGTAATTA 57.730 30.769 17.27 0.00 41.66 1.40
1747 1799 8.731605 TCAAGTCACTTGTGTTTGTGTAATTAA 58.268 29.630 17.27 0.00 41.66 1.40
1749 1801 7.703328 AGTCACTTGTGTTTGTGTAATTAAGG 58.297 34.615 0.46 0.00 35.82 2.69
1750 1802 7.338449 AGTCACTTGTGTTTGTGTAATTAAGGT 59.662 33.333 0.46 0.00 35.82 3.50
1751 1803 8.614346 GTCACTTGTGTTTGTGTAATTAAGGTA 58.386 33.333 0.46 0.00 35.82 3.08
1752 1804 9.344772 TCACTTGTGTTTGTGTAATTAAGGTAT 57.655 29.630 0.46 0.00 35.82 2.73
1756 1808 8.804688 TGTGTTTGTGTAATTAAGGTATTTGC 57.195 30.769 0.00 0.00 0.00 3.68
1757 1809 7.868415 TGTGTTTGTGTAATTAAGGTATTTGCC 59.132 33.333 0.00 0.00 0.00 4.52
1758 1810 7.868415 GTGTTTGTGTAATTAAGGTATTTGCCA 59.132 33.333 0.00 0.00 0.00 4.92
1759 1811 8.421784 TGTTTGTGTAATTAAGGTATTTGCCAA 58.578 29.630 0.00 0.00 0.00 4.52
1760 1812 9.262358 GTTTGTGTAATTAAGGTATTTGCCAAA 57.738 29.630 0.00 0.00 0.00 3.28
1761 1813 9.482627 TTTGTGTAATTAAGGTATTTGCCAAAG 57.517 29.630 0.00 0.00 0.00 2.77
1762 1814 8.410673 TGTGTAATTAAGGTATTTGCCAAAGA 57.589 30.769 0.00 0.00 0.00 2.52
1763 1815 9.030452 TGTGTAATTAAGGTATTTGCCAAAGAT 57.970 29.630 0.00 0.00 0.00 2.40
1821 1877 6.533723 GTGTAATTAAGGTATTTGCCAAAGCC 59.466 38.462 0.00 0.86 38.69 4.35
1867 1923 3.287312 TGTGCAGCAAGCTGAAATAAC 57.713 42.857 25.03 13.68 46.30 1.89
1889 1945 7.828508 AACATGCTTGTGATGTATATTCCAT 57.171 32.000 5.94 0.00 35.83 3.41
1893 1949 7.263100 TGCTTGTGATGTATATTCCATGTTC 57.737 36.000 0.00 0.00 0.00 3.18
1955 2013 1.476488 TCCGACTTTCGATGCAGATCA 59.524 47.619 0.00 0.00 43.74 2.92
1969 2027 4.763073 TGCAGATCAGTGGTTGAGATTAG 58.237 43.478 0.00 0.00 39.68 1.73
1991 2050 3.064900 ACTTGCCTCTTCAGCTAAAGG 57.935 47.619 0.00 0.00 0.00 3.11
1993 2052 1.362224 TGCCTCTTCAGCTAAAGGGT 58.638 50.000 0.00 0.00 0.00 4.34
1995 2054 2.910319 TGCCTCTTCAGCTAAAGGGTAA 59.090 45.455 0.00 0.00 0.00 2.85
1996 2055 3.055094 TGCCTCTTCAGCTAAAGGGTAAG 60.055 47.826 0.00 0.00 0.00 2.34
1997 2056 3.055021 GCCTCTTCAGCTAAAGGGTAAGT 60.055 47.826 0.00 0.00 0.00 2.24
1998 2057 4.565861 GCCTCTTCAGCTAAAGGGTAAGTT 60.566 45.833 0.00 0.00 0.00 2.66
1999 2058 5.338137 GCCTCTTCAGCTAAAGGGTAAGTTA 60.338 44.000 0.00 0.00 0.00 2.24
2000 2059 6.632900 GCCTCTTCAGCTAAAGGGTAAGTTAT 60.633 42.308 0.00 0.00 0.00 1.89
2001 2060 6.987404 CCTCTTCAGCTAAAGGGTAAGTTATC 59.013 42.308 0.00 0.00 0.00 1.75
2002 2061 6.885922 TCTTCAGCTAAAGGGTAAGTTATCC 58.114 40.000 3.76 3.76 0.00 2.59
2003 2062 6.672657 TCTTCAGCTAAAGGGTAAGTTATCCT 59.327 38.462 9.06 9.06 42.42 3.24
2012 2071 6.886178 AGGGTAAGTTATCCTTTTAGCTGA 57.114 37.500 9.06 0.00 35.10 4.26
2013 2072 7.266905 AGGGTAAGTTATCCTTTTAGCTGAA 57.733 36.000 9.06 0.00 35.10 3.02
2014 2073 7.339482 AGGGTAAGTTATCCTTTTAGCTGAAG 58.661 38.462 9.06 0.04 35.10 3.02
2015 2074 7.182206 AGGGTAAGTTATCCTTTTAGCTGAAGA 59.818 37.037 9.06 0.00 35.10 2.87
2016 2075 7.827729 GGGTAAGTTATCCTTTTAGCTGAAGAA 59.172 37.037 4.81 0.00 34.46 2.52
2017 2076 8.884726 GGTAAGTTATCCTTTTAGCTGAAGAAG 58.115 37.037 11.88 0.00 34.46 2.85
2018 2077 9.438228 GTAAGTTATCCTTTTAGCTGAAGAAGT 57.562 33.333 11.88 1.49 34.46 3.01
2019 2078 7.913674 AGTTATCCTTTTAGCTGAAGAAGTG 57.086 36.000 11.88 0.00 0.00 3.16
2057 2116 7.875971 AGTTTTTGATAAGTAAAGCTGGACAG 58.124 34.615 0.00 0.00 0.00 3.51
2063 2122 7.272978 TGATAAGTAAAGCTGGACAGATTACC 58.727 38.462 17.38 7.51 35.80 2.85
2348 2643 7.231317 AGCTATGAAATTTCAGGAACAAACTCA 59.769 33.333 24.17 0.00 41.08 3.41
2497 2792 2.366533 ACGAAGATTCTCTCGTGCCTA 58.633 47.619 17.26 0.00 37.44 3.93
2543 2838 2.579207 AACCTATCATGTCGTGTCCG 57.421 50.000 0.00 0.00 0.00 4.79
2576 2871 0.531200 GTCGAGAGGGAACATTCGGT 59.469 55.000 0.00 0.00 38.48 4.69
2578 2873 1.747355 TCGAGAGGGAACATTCGGTAC 59.253 52.381 0.00 0.00 38.48 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.036732 TGGCGAATGAGGAGCAAAGT 59.963 50.000 0.00 0.00 0.00 2.66
150 163 2.728690 TGGTTGATGAAGCATGTTGC 57.271 45.000 0.00 0.00 45.46 4.17
167 180 0.671251 TGCCCTTTTGCGTAGTTTGG 59.329 50.000 0.00 0.00 0.00 3.28
176 189 2.888834 TGTCTTCTTTGCCCTTTTGC 57.111 45.000 0.00 0.00 0.00 3.68
206 219 5.566230 GCTGTTCAGGAAGCAATTCAGAATT 60.566 40.000 2.20 2.20 39.31 2.17
223 236 3.987868 GTCTCGAGTATGTTTGCTGTTCA 59.012 43.478 13.13 0.00 0.00 3.18
229 242 1.630148 AGCGTCTCGAGTATGTTTGC 58.370 50.000 13.13 7.16 0.00 3.68
230 243 4.017380 AGTAGCGTCTCGAGTATGTTTG 57.983 45.455 13.13 0.00 0.00 2.93
231 244 4.413087 CAAGTAGCGTCTCGAGTATGTTT 58.587 43.478 13.13 0.00 0.00 2.83
246 261 4.213059 GCATATCCTTTCTCTGCAAGTAGC 59.787 45.833 0.00 0.00 45.96 3.58
271 286 0.395173 GGTGGTGGGTTCTGTTGTGT 60.395 55.000 0.00 0.00 0.00 3.72
274 289 1.530655 GGGGTGGTGGGTTCTGTTG 60.531 63.158 0.00 0.00 0.00 3.33
391 406 0.396417 TTGGGGTTGTGGGTTCTGTG 60.396 55.000 0.00 0.00 0.00 3.66
434 449 4.280174 AGATGAAGCAATTCAGCAGTGTTT 59.720 37.500 8.71 0.00 39.61 2.83
587 602 8.301720 TGAAGGCTTCATTTGATAATATCATGC 58.698 33.333 25.38 2.99 35.33 4.06
712 764 1.182667 CAGTGGGACGTGATGGTCTA 58.817 55.000 0.00 0.00 37.12 2.59
1243 1295 1.153489 CATCCTCACCAGTGCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
1252 1304 3.070734 ACAGCATCTATGTCATCCTCACC 59.929 47.826 0.00 0.00 0.00 4.02
1302 1354 1.820519 GCATGGGTCTCTTTGATTGCA 59.179 47.619 0.00 0.00 0.00 4.08
1486 1538 0.898326 TCAGTAGGCAGCTCCGTTGA 60.898 55.000 0.00 0.00 40.77 3.18
1503 1555 3.295093 CACTCTCCTATTCAGCTCCTCA 58.705 50.000 0.00 0.00 0.00 3.86
1599 1651 6.364165 CACAAAGACAAACATGATTAAGCCAG 59.636 38.462 0.00 0.00 0.00 4.85
1736 1788 8.861086 TCTTTGGCAAATACCTTAATTACACAA 58.139 29.630 13.89 0.00 0.00 3.33
1765 1817 6.527057 AGTGACTTGATAAGGTACTGGTAC 57.473 41.667 2.58 2.58 40.86 3.34
1766 1818 6.495872 ACAAGTGACTTGATAAGGTACTGGTA 59.504 38.462 30.03 0.00 43.42 3.25
1767 1819 5.307196 ACAAGTGACTTGATAAGGTACTGGT 59.693 40.000 30.03 1.45 43.42 4.00
1768 1820 5.639506 CACAAGTGACTTGATAAGGTACTGG 59.360 44.000 30.03 0.73 43.42 4.00
1769 1821 6.223852 ACACAAGTGACTTGATAAGGTACTG 58.776 40.000 30.03 16.67 43.42 2.74
1770 1822 6.420913 ACACAAGTGACTTGATAAGGTACT 57.579 37.500 30.03 2.94 43.42 2.73
1771 1823 7.012044 ACAAACACAAGTGACTTGATAAGGTAC 59.988 37.037 30.03 0.00 43.42 3.34
1772 1824 7.011950 CACAAACACAAGTGACTTGATAAGGTA 59.988 37.037 30.03 0.00 43.42 3.08
1773 1825 5.885912 ACAAACACAAGTGACTTGATAAGGT 59.114 36.000 30.03 18.29 43.42 3.50
1774 1826 6.183360 ACACAAACACAAGTGACTTGATAAGG 60.183 38.462 30.03 17.73 43.42 2.69
1775 1827 6.785191 ACACAAACACAAGTGACTTGATAAG 58.215 36.000 30.03 17.99 43.42 1.73
1776 1828 6.751514 ACACAAACACAAGTGACTTGATAA 57.248 33.333 30.03 0.00 43.42 1.75
1777 1829 7.851387 TTACACAAACACAAGTGACTTGATA 57.149 32.000 30.03 7.52 43.42 2.15
1778 1830 6.751514 TTACACAAACACAAGTGACTTGAT 57.248 33.333 30.03 15.43 43.42 2.57
1821 1877 2.093658 ACTTGATAAGGTACCAGTGCCG 60.094 50.000 15.94 0.00 40.50 5.69
1824 1880 6.655003 ACATTTGACTTGATAAGGTACCAGTG 59.345 38.462 15.94 0.00 0.00 3.66
1867 1923 7.210718 ACATGGAATATACATCACAAGCATG 57.789 36.000 0.00 0.00 0.00 4.06
1889 1945 3.438434 TGTTGCTTGCATAATAGCGAACA 59.562 39.130 15.73 15.73 40.26 3.18
1893 1949 5.954434 ATTTTGTTGCTTGCATAATAGCG 57.046 34.783 3.79 0.00 40.26 4.26
1955 2013 4.042187 AGGCAAGTTCTAATCTCAACCACT 59.958 41.667 0.00 0.00 0.00 4.00
1969 2027 3.438434 CCTTTAGCTGAAGAGGCAAGTTC 59.562 47.826 19.19 0.00 0.00 3.01
1991 2050 8.788325 TTCTTCAGCTAAAAGGATAACTTACC 57.212 34.615 7.88 0.00 38.85 2.85
1993 2052 9.436957 CACTTCTTCAGCTAAAAGGATAACTTA 57.563 33.333 7.88 0.00 38.85 2.24
1995 2054 7.680730 TCACTTCTTCAGCTAAAAGGATAACT 58.319 34.615 7.88 0.00 0.00 2.24
1996 2055 7.604545 ACTCACTTCTTCAGCTAAAAGGATAAC 59.395 37.037 7.88 0.00 0.00 1.89
1997 2056 7.680730 ACTCACTTCTTCAGCTAAAAGGATAA 58.319 34.615 7.88 0.00 0.00 1.75
1998 2057 7.246171 ACTCACTTCTTCAGCTAAAAGGATA 57.754 36.000 7.88 0.00 0.00 2.59
1999 2058 6.120507 ACTCACTTCTTCAGCTAAAAGGAT 57.879 37.500 7.88 0.00 0.00 3.24
2000 2059 5.552870 ACTCACTTCTTCAGCTAAAAGGA 57.447 39.130 7.88 0.00 0.00 3.36
2001 2060 7.065204 GGATAACTCACTTCTTCAGCTAAAAGG 59.935 40.741 7.88 0.00 0.00 3.11
2002 2061 7.821846 AGGATAACTCACTTCTTCAGCTAAAAG 59.178 37.037 2.32 2.32 0.00 2.27
2003 2062 7.680730 AGGATAACTCACTTCTTCAGCTAAAA 58.319 34.615 0.00 0.00 0.00 1.52
2004 2063 7.246171 AGGATAACTCACTTCTTCAGCTAAA 57.754 36.000 0.00 0.00 0.00 1.85
2005 2064 6.859112 AGGATAACTCACTTCTTCAGCTAA 57.141 37.500 0.00 0.00 0.00 3.09
2006 2065 6.665680 AGAAGGATAACTCACTTCTTCAGCTA 59.334 38.462 0.00 0.00 46.32 3.32
2007 2066 5.483583 AGAAGGATAACTCACTTCTTCAGCT 59.516 40.000 0.00 0.00 46.32 4.24
2008 2067 5.729510 AGAAGGATAACTCACTTCTTCAGC 58.270 41.667 0.00 0.00 46.32 4.26
2009 2068 8.062065 ACTAGAAGGATAACTCACTTCTTCAG 57.938 38.462 10.91 6.67 46.32 3.02
2010 2069 8.423906 AACTAGAAGGATAACTCACTTCTTCA 57.576 34.615 10.91 0.00 46.32 3.02
2011 2070 9.713713 AAAACTAGAAGGATAACTCACTTCTTC 57.286 33.333 10.91 0.00 46.32 2.87
2014 2073 9.490379 TCAAAAACTAGAAGGATAACTCACTTC 57.510 33.333 0.00 0.00 40.59 3.01
2385 2680 4.943705 ACGAGTGATTTTGCCACTATTCAT 59.056 37.500 0.00 0.00 44.14 2.57
2431 2726 8.459635 GCTACCTTCGTATTGATCTATCACATA 58.540 37.037 0.00 0.00 36.36 2.29
2466 2761 1.230635 AATCTTCGTTGCGTGCTGCT 61.231 50.000 0.00 0.00 46.63 4.24
2508 2803 1.796459 AGGTTAACTTGCTACGCGTTG 59.204 47.619 20.78 18.31 0.00 4.10
2543 2838 3.243569 CCTCTCGACTGTTACCATGATCC 60.244 52.174 0.00 0.00 0.00 3.36
2560 2855 2.738964 GCAGTACCGAATGTTCCCTCTC 60.739 54.545 0.00 0.00 0.00 3.20
2565 2860 2.380084 TCTGCAGTACCGAATGTTCC 57.620 50.000 14.67 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.