>input_sequence_74829
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-----------ATGGCTAGAGGCTACGCAGGCCGGATCCAGGCCTTCTCCAAAGCCGCTCTTCTTGGTTTGGTCCTCTTA
TCCATGGTGACCTGGGTACCGCATGCGTGTTCTTGCCTGAGGGCCTTCCTCTTTGTGTCACTTCCTTCTGCTGCTTCAGC
GATCGCCACACCCAAGTGCCTCTTCATCTTCTCCAACATCATCGTCCTCTTCCTCGCCACCGAGTCCAGGCTCTCGCGGA
ACGGTGCTCGATCCCCGAGCACTGGTGAGGATGACATAGATGCTGTGGTCCGTGAGCTTGTGGCTTTTACACATGCAATC
AAAGAGACCCATGCTGCAGAAGAGATCGTCAAAGCAGAACAAGAAGTTAGTGTACGCATGACCACGCAGCAGCTAGATCA
ATGTGAAAAGGAAGAAGAGAGCGACGTCGCACTGGTTAACAATAATGTTGGTGATGACCTGCAAGAAGAGGTGATGAAGG
AAGAAGACTGTGAGGAGTCAACGGAGCTGCCTACTGAGGAGCTGAATAGGAGAGTGGAAGACTTCATTGCAAGATTCAAC
ATGGAGAGGCAGCTCGAGGCAAGGATGGTCGTGTGTTGCTGCTGA-----------------------------------
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>chr6A_1_TraesCS6A01G337400
TTCCCCATTACTTTGCTCCTCATTCGCCAACACAAAATATCAACCTGATTTCGCCAGCTTCCTG------------ACAA
CAACAAACAACACTCTGCTAAAGGCCTAAAGCCTAAAGCACCTGACCAACGGTTTCAGCTGACTGACTGAAACCGGCCTC
CTGCAACATGCTTCATCAACCAAACTACGCAAAAGGGCAAAGAAGACATGAGACGGACAATTCTGAATTGCTTCCTGAAC
AGCA--AACATACTCGAGACGCTACTTGCAGAGAAAGGATATGCTACACAACAGAACCCACCACCCCAAAAGGGACAAAG
AAGACATGAGACGAACAATGCTGAATTGCTTCCCCAACAGCAAACATACTCGAGATACTACTTGCAGAGAAAGGATATGC
TACAACACAGAACCCACAACCCCAAAAGGGACAAAGAAGACATGAGACAAACACTGCTGAATTGCTTCATCTTCATTGCA
GAAGCAACACCTTTTGTTCCTCTACCATTTGCATCTCGATAGATTGGATCTTATTTGGAATAATCCCTCGATAGATACAT
TGAACAAATATCTTCATCTAAATTTGGGTTTTCAGTTTCCCGCATGATATTATCAAATGAAGCCTTCAAAAAATAAAAAT
AAATTCCACCGAGTCCAGCGTCGAGAATGATGTAGAGCCACCATAGCAAGACACCTTGCAATCAGCCCATATTCCCCAA-
------------------------------------GCACCACTAGACCATCACGTCCCACTGCTTTTTGCAAAGATGGG
AAAAGCAGAGAACAGCATAAGGCAGGGAATCAAGTGATTGATTTCAACCGGGAATAACTTAGCCGGCGGGGTAAAGACCA
ACTGACTTTTGGCCACTACTCTCCAGCTATAAATAGACCACACCCGCATGCGTTAGGTGCCGTGCATCCATCAGGTTCCT
TGTGTTTTTTCATGCATATGCTCGTTCTTCTTTTCGCTATTGCAAAGCCAAGAGTGCAACGCAACATCGCCCCTTTACCA
CGAAAACCGCCATGGCTAGAGGCTACGCAGGCCGGATCCAGGCCTTCTCCAAAGCCGCTCTTCTTGGTTTGGTCCTCTTA
TCCATGGTGACCTGGGTACCGCATGCGTGTTCTTGCCTGAGGGCCTTCCTCTTTGTGTCACTTCCTTCTGCTGCTTCAGC
GATCGCCACACCCAAGTGCCTCTTCATCTTCTCCAACATCATCGTCCTCTTCCTCGCCACCGAGTCCAGGCTCTCGCGGA
ACGGTGCTCGATCCCCGAGCACTGGTGAGGATGACATAGATGCTGTGGTCCGTGAGCTTGTGGCTTTTACACATGCAATC
AAAGAGACCCATGCTGCAGAAGAGATCGTCAAAGCAGAACAAGAAGTTAGTGTACGCATGACCACGCAGCAGCTAGATCA
ATGTGAAAAGGAAGAAGAGAGCGACGTCGCACTGGTTAACAATAATGTTGGTGATGACCTGCAAGAAGAGGTGATGAAGG
AAGAAGACTGTGAGGAGTCAACGGAGCTGCCTACTGAGGAGCTGAATAGGAGAGTGGAAGACTTCATTGCAAGATTCAAC
ATGGAGAGGCAGCTCGAGGCAAGGATGGTCGTGTGTTGCTGCTGAGGAAACTGGCTTAATCATGTTTGTCTTTGTGTAAT
TAAGGTATTTGCCAAAGCTGGTACTAGTACCTTATCAAGTCACCTGTGTTTGTGTAATTAAGGTATTTGCCAAAGTTGGT
ACTGGTACCTTATCAAGTCACTTGTGTTTGTGTAATTAAGGTATTTGCCAAAGATGGTACCAGTACCTTATCAAGTCACT
TGTGTTTGTGTAATTAA----GGTATTTGCCAAAGCCGGCACTGGTACCTTATCAAGTCAAATGTGCAGCAAGCTGAAAT
AACATGCTTGTGATGTATATTCCATGTTCGCTATTATGCAAGCAACAAAATTACATCTTCCTTT--TTTATTTCCGACTT
TCGATGCAGATCAGTGGTTGAGATTAG-AACTTGCCTCTTCAGCTAAAGGGTAAGTTATCCTTTTAGCTGAAGAAGTGAG
TTATCCTTCTAGTTTTTGATAAGTAAAGCTGGACAGATTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------
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------------------------------------------------------------------AAATTGCCAGATTT
GTATACCTCTACGAGTATCAACAAAAGTTCTTTATGGGAGGTAGTATGTTATATATAGCTATGAAATTTCAGGAACAAAC
TCAAATGAACCAGATAATATGAAATTTATAAGCCGCAAAATGAATAGTGGCAAAATCACTCGTGGTACATGATTCATATG
ATGTATATGTGATAGATCAATACGAAGGTAGCATCGTGTAAGCAGCACGCAACGAAGATTCTCTCGTGCCTACACCTGTC
GGCAACGCGTAGCAAGTTAACCTATCATGTCGTGTCCGGATCATGGTAACAGTCGAGAGGGAACATTCGGTACTGCAGAA
TGGAGCAC
>chr6D_1
TTCCCCATTGCTTTGCTCCTCATTCGCCAACACAAAATATCAACCTGATTTCGCCAGCTTCCTGGCAGCAAAGTTAACAA
CAACAAACAACACACTGCTAAAGGCCTAAAGCCTAAAGCACCTGACCAACGGTTTCAGCTGACTGACTGAAACCGGAGTC
CTACAACATGCTTCATCAATCAAACTACACAAAAGGGCAAAGAAGACATGAGATGGACGATTCTGAATTGCTTCCCGAAC
ACATCGAACATACTTGAGATACTACTTGCAGAGAAAGGATATGCTGCAAAACAGAACCCACCACCCCAAAAGGGACAAAG
AAGACATGAGACGAACAATGCTGAAGTGCTTCCCCAACAGCAAACATACTCCAGATACTACTTGCAGAGAAAGGATATGC
TACAAAACAGAACCCACCACCCCAAAAGGGACAAAGAAGACATGAGACGAACACTGCTGAATTGCTTCATCTTCATTGCA
GAAGCAACACCTTTTGTTCCTCTACCATTTGCATCTCGATAGATTGGATCTTATTTGGAATAATCCCTCGATAGATACAC
TGAACAAATATCTTCATCTAAATTTGGGTTTTCAGTTTCCCACATGGTATTATCAAATGAAGCCTTCAAAATATAAAAAT
AAATTCCACCGAGTCCAGCGTCGAGAATGATGTAGAGCCACCATAGCAAGACACCTTGCAATCAGCCCATATTCCCCAA-
------------------------------------GCACCACCAGACCATCACGTCCCACTGCTTTTTGCAAAGATGGG
AAAAGCAGAGAACAGCATAAGGCAGGGAATCAAGTGATTGATTTCAACCGGGAATAACTTAGCCGGCGGGGTAAAGACCA
ACTGACTTTTGGCCACTACTCTCCAGCTATAAATAGACCACACCCGCATGCGTTAGGTGCCGTGCATCCATCAGGTTCCT
TGTGTTTTTTCATGCATATGCTCGTTCTTCTTTTCGCTATTGCAAAGCCAAGAGTGCAACGCAACATCGCCCCTTTACCA
CGAAAACCACCATGGCTAGAGGCTACGCAGGCCGGATCCAGGCCTTCTCCAAAGCCGCTCTTCTTGGTTTGGTCCTCTTA
TCCATGGTGACCTGGGTACCGCATGCGTGTTCTTGCCTGAGGGCCTTCCTCTTTGTGTCACTTCCTTCTGCTGCTTCAGC
GATCGCCACACCCAAGTGCCTCTTCATCTTCTCCAACATCATCGTCCTCTTCCTCGCCACCGAGTGCAGGCTCTCGCGGA
ACGGTGCTCGATCCACGAGCACTAATGAGGATGACATAGATGCTGTGGTCCGTGAGCTTGTGGCTTTTACACACGCAATC
AAAGAGACACATGCTGCACAAGAGATCGTCAAAGCAGAACAAGAAGTTAGTGTACGCATGACCACGCAGCAGCTAGATCA
ATGTGAAAAGGAAGAAGAGAGCGACGTCGCACTGGTTAACAATAATGTTGGTGATGACCTGCAAGAAGAGGTGATGAAGG
AAGAAGACTGTGAAGAGGCAACGGAGCTGCCTACCGAGGAGCTGAATAGGAGAGTGGAAGACTTCATTGCAAGATTCAAC
ATGGAGAGGCAGCTCGAGGCAAGGATGGTCGTGTGTTGCTGCTGAGGAAAGTGGCTTAATCATGTTTGTCTTTGTGTAAT
TAAGGTATTTGCCAAAACTGGTACTAGTACCTTATCAAGTCACCTGTGTTTGTGTAATTAAGGTATTTGCCAAAGTTGGT
ACTGGTACCTTATCAAGTCACTTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTGAGAA-------------CAAGTCACT
TGTGTTTGTGTAATTAATTAAGGTATTTGCCAAAGCTGGTACTGGTACCTTATCAAGTCAACTGTGCAGCAAGCTGAAAT
AATATGCTTGTGATGTATATTCCACGTTTGCTATTATGCAAGCAACAAAGTCACATCTTCCTTTTTTTTATTTCCGACTT
TCGATGCAGATCCGTGGTTGAGATTAAAAACTTGCCTCTTCAGCTAAAGAGCA-------------------------AG
TTATCCTTCTAGTTTTTTATAAGTAAAGCTGGACAAATTACTCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN-----------------------------TAAGTTCTTACTCAATCTCAGTATTTGTGGAAATTGACAGATTT
GTATACCTCTACGAGTATCAACAAAAGTTCTTTATGGGAGGTAGTATGTTATATATAGCAATGAAATTTCAGGAAGAAAC
TCGAATGAACTAGATAATATGAAATTTATAAGCCGCAAACTGAATAGTGGCAAAATCACTCGTGGTACATAATTTGTATG
ATGTAAATGTGATAGATCAATACGAAGGTAGCATCGTGTACGCAGCACGCAACGAAGATTCTCTCGCGCCTGCACCTATC
GGTAACGCGTGGCAAGTTAACCTATCATGTTGTGTCCTGATCATGGTAACAGTCAAGAGAGAACATTCGGCAGTGCAGAA
TGGAGCAC
>chr6B_1
TTCCCCATTGCTTTGCTCCTCATTCGCCAACACAAAATATCAACCTGATTTCGCCAGCTTCCTGGCAGCAAAGTTAACAA
CAACAAACAACACACTGCTAAAGGCCTAAAGCCTAAAGCACCTGACCAACGGTTTCAGCTGACTGACTGAAACCGGAGCC
CTACAACATGCTTCATCAATCAAACTACACAAAAGGGCAAAGAAGACATGAGATGGACGATTCTAAATTGCTTCCCGAAC
ACATCGAACATACTTGAGATACTACTTGCAGAGAAAGGATATGCTGCAAAACAGAACCCACCACCCCAAAAGGGACAAAG
AAGACATGAGACGAACAATGCTGAAGTGCTTCCCCAACAGCAAACATACTCGAGATACTACTTGCAGAGAAAGGATATGC
TACAAAACAGAACGCACCACCCCAAAAGGGACAAAGAAGACATGAGAAGAACACTGCTGAATTGCTTCATCTTCATTGCA
GAAGCAACACCTTTTGTTCCTCTACCATTTGCATCTCGATAGATTGGATCTTATTTGGAATAATCCCTCGATAGATACAT
CAGACAAATATCTTCATCTAAATTTGGATTTTCAGTTTCCCACGTGATAATATCAAATGAAGCCTTCAAAAAATAAAAGT
AAATTCCACCGAGTCCAGCGTCCAGAATGATGTAGAGCCACCATAGCAAGACACCTTGCAATCAGCCCATATTCCCCAAG
CACCACCAGACCTTGCAATCAGCCCATATTCCCCAAGCACCACCAGACCATCACGTCCCACTGCTTTTTGCAAAGATGGG
AAAAGCAGAGAACAGCATAAGGCAGGGAATCAAGTGATTGATTTCAACCGGGAATAACTTAGCCGGCGGGGTAAAGACCA
ACTGACTTTTGGCCACTACTCTCCAGCTATAAATAGACCACACCCGCATGCGTTAGGTGCCGTGCATCCATCAGGTTCCT
TGTGTTTTTTCATGCATATGCTCGTTCTTCTTTTCGCTATTGCAAAGCCAAGAGTGCAACGCAACATCGCCCCTTTACCA
CGAAAACCGCCATGGCCAGAGGCTACGCAGGCCGGCTCCAGGCCTTCTCCAAAGCCGCTCTTCTTGGTTTGGTCCTCTTA
TCCATGGTGACCTGGGTGCTGCATGCATGTTCTTGCCTGAGGGCCTTCCTCTTTGTGTCACTTCCTTCTGCTGCTTCAGC
GATCGCCACACCCAAGTGCCTCTTCATCTTCTCCAACATCATCGTCCTCTTCCTCGCCACCGAGTGCAGGCTCTCGCGGA
ACGGTGCTCGATCCACAAGCACTAGCGACGATGACATAGATGCTGTGGTCCGTGAGCTTGTGGCTTTTACACACGCACTC
AAAGAGACCCATGCTGCAGAAGAGATCGTCAAAGCAGAACAAGAAGTTAGTGTACGCATGACCACGCAGCAGCTAGATCA
ATGTGAAAAGGAAGAAGAGAGTGACGTCGCACTGCTTAATAATTTA---GGTGATGACCTGCAAGAAGAGGTGATGAAGG
AAGAAGACTGTGAGGAGGCAACGGAGCTGCCTACCGAGGAGCTGAATAGGAGAGTGGAAGACTTCATTGCAAGATTCAAC
ATGGAGAGGCAGCTCGAGGCAAGGATGGTCGTGTGTTGCTGCTGACGAAAGTGGCTTAATCATGTTTGTTTTTGTGTGAT
TAAGGTATTTACCAAAGCTGGTACTAGTAACTTATCAAGTCACTTGTGTTT-TGTAATTAAGGTATTTGCCAAAGCTGGT
ACCGGTACCTTA----------------------------------------------------------TCAAGTCACT
TGTGTTTGTGTAATTAA----GGTATTTGCCAAAGCTGGTACCGGTACCTTATCAAGTCAAATGTGCAGCAAGCTGAAAT
AATATGCTTGTGATGTATATTCCACGTTTGCTATTATGCAAGCAACATAATTACACATTCCTTC--TTTATGTTCGACTT
TCGATGCAGATCCGTGGTTGAGATT-AAAACTTGCCTCTTCAGCTAAAGAGCA-------------------------AG
TTATCCTTCTAGTTTTTGATAAGTAAAGCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGTGCTTTATGGATTTGTATAC
CATGGTTTGAGTCAAGTTCAAGCTCATCTTCCTCTTTAAGTTCTTACTCAATCTCAGTATTTGTGGAAATTGCCAGATTT
GTATACCTCTACGAGTATCAACAAAAGTTCTTTATGGAGGT--GTATGTTATATATAGCTATGAAACTTCAGGAACAAAC
TCGAATGAACCAGATAATATGAAATTTATAAGCCGCAAACTGGATAGTGGCAAAATCACTCATGGTACATAATTCTTATG
ATGTAAATGTGATAGATCAATACGAAGGTAGCATCGTGTACGCAGCACCCAACGAAGATTCTCTCGTGCCTGCGCCTGTC
GGTAACGCGTAGCAAGTTAACCTATCATGTCGTGTCCCGATCATGGTAACAGTCAAGAGAGAACATTCGGCAGTGCAGAA
TGGAGCAC
>SNPs
---------S----------------------------------------------------------------------
-------------S--------------------------------------------------------------SS--
--S----------------S--------S------------------------S----S----------------S----
-SSS----------S----SS------------------------S--S-------------------------------
-------------------------S------------------------------------------------------
-----S-----------S------------------------------S-------------------------------
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--------------S--------S-------------------------------------------------S------
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-----------------S----------------S---------------------------------------------
--------------------------------------------------S-----------------------------
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---------------------------S-----SSS-SS-SSSS-SSSSSSSSSS-SSSSSSSSSSSSSS----------
------------------------------------S--S----------------------------------------
--S---------------------S---S---------------------------------------------------
------------S-------------S----------------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSS--
-----------------------------------S-----S--------------------------------------
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--S------------------------------------S------------------------------S----S----
-----S----------------------------------S------------------------------S--------
--S----------------------------------S----------------S----S----------S-S-------
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>forward_158
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----------------------------------------------------------CTGACTGACTGAAACCGGCC--
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>reverse_1538
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-----------------TCAACGGAGCTGCCTACTGA-------------------------------------------
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>forward_764
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-----------------------CCATATTCCCCAAGCACCACT------------------------------------
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>reverse_2761
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----------------------------------------AGCAGCACGCAACGAAGATT--------------------
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