Multiple sequence alignment - TraesCS6A01G309500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G309500 chr6A 100.000 3246 0 0 1 3246 545647074 545650319 0.000000e+00 5995.0
1 TraesCS6A01G309500 chr6D 91.456 2060 83 36 543 2552 399758934 399760950 0.000000e+00 2743.0
2 TraesCS6A01G309500 chr6D 89.167 360 23 7 2898 3246 399761313 399761667 4.970000e-118 435.0
3 TraesCS6A01G309500 chr6D 84.848 330 24 2 2588 2891 399760947 399761276 3.150000e-80 309.0
4 TraesCS6A01G309500 chr6D 91.908 173 11 2 2 171 399758726 399758898 4.190000e-59 239.0
5 TraesCS6A01G309500 chr6B 89.033 1696 88 43 1591 3246 598451614 598453251 0.000000e+00 2012.0
6 TraesCS6A01G309500 chr6B 93.974 1062 39 14 539 1585 598450483 598451534 0.000000e+00 1583.0
7 TraesCS6A01G309500 chr6B 84.000 175 20 5 2 171 598450278 598450449 9.320000e-36 161.0
8 TraesCS6A01G309500 chr7B 84.672 274 33 8 995 1268 113060450 113060714 6.910000e-67 265.0
9 TraesCS6A01G309500 chr7A 84.191 272 31 8 1000 1268 150559748 150560010 1.490000e-63 254.0
10 TraesCS6A01G309500 chr7D 83.755 277 33 7 995 1268 150900639 150900906 5.380000e-63 252.0
11 TraesCS6A01G309500 chr7D 83.575 207 25 5 339 537 511156601 511156806 5.530000e-43 185.0
12 TraesCS6A01G309500 chr7D 83.575 207 25 5 339 537 511161444 511161649 5.530000e-43 185.0
13 TraesCS6A01G309500 chr7D 83.415 205 24 6 342 537 517318711 517318508 7.150000e-42 182.0
14 TraesCS6A01G309500 chr7D 82.609 207 27 5 339 537 511154186 511154391 1.200000e-39 174.0
15 TraesCS6A01G309500 chr7D 82.609 207 27 5 339 537 511159018 511159223 1.200000e-39 174.0
16 TraesCS6A01G309500 chr2A 87.678 211 21 3 332 537 180102186 180101976 1.160000e-59 241.0
17 TraesCS6A01G309500 chr4D 83.173 208 25 6 339 537 36473567 36473773 7.150000e-42 182.0
18 TraesCS6A01G309500 chr4D 82.692 208 26 6 339 537 36474161 36474367 3.330000e-40 176.0
19 TraesCS6A01G309500 chr3B 81.991 211 32 6 331 537 439467706 439467498 1.200000e-39 174.0
20 TraesCS6A01G309500 chr3A 89.130 46 5 0 263 308 453819331 453819376 1.260000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G309500 chr6A 545647074 545650319 3245 False 5995.0 5995 100.000000 1 3246 1 chr6A.!!$F1 3245
1 TraesCS6A01G309500 chr6D 399758726 399761667 2941 False 931.5 2743 89.344750 2 3246 4 chr6D.!!$F1 3244
2 TraesCS6A01G309500 chr6B 598450278 598453251 2973 False 1252.0 2012 89.002333 2 3246 3 chr6B.!!$F1 3244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 413 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.0 0.0 0.0 4.73 F
1292 1313 0.100861 GGTAAGCTTCGAGTCTCCGG 59.899 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2177 0.034896 GGTTCAGAACGGGAGCAGAA 59.965 55.0 7.22 0.0 0.00 3.02 R
2804 2968 0.108329 AGGTATCGTGGGCGTCAAAG 60.108 55.0 0.00 0.0 39.49 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 73 0.238289 CAAGTTTAGTGCACGGCCAG 59.762 55.000 12.01 0.00 0.00 4.85
160 164 1.801025 CGGCGAAACCAGCAACTTTTT 60.801 47.619 0.00 0.00 39.03 1.94
161 165 1.592543 GGCGAAACCAGCAACTTTTTG 59.407 47.619 0.00 0.00 38.86 2.44
176 180 7.220599 CAACTTTTTGCTTGATCGAAAAAGA 57.779 32.000 24.15 8.67 44.22 2.52
177 181 7.674564 CAACTTTTTGCTTGATCGAAAAAGAA 58.325 30.769 24.15 5.38 44.22 2.52
178 182 8.330302 CAACTTTTTGCTTGATCGAAAAAGAAT 58.670 29.630 24.15 15.74 44.22 2.40
179 183 8.065557 ACTTTTTGCTTGATCGAAAAAGAATC 57.934 30.769 24.15 0.00 44.22 2.52
203 208 6.376299 TCTTTTGCTTGATGAGTGCATAGAAT 59.624 34.615 0.00 0.00 36.55 2.40
223 228 7.334844 AGAATTTCAATTAATTCGGGGAGAC 57.665 36.000 0.00 0.00 45.08 3.36
234 239 2.415624 TCGGGGAGACAGGTAGATAGA 58.584 52.381 0.00 0.00 0.00 1.98
235 240 2.987437 TCGGGGAGACAGGTAGATAGAT 59.013 50.000 0.00 0.00 0.00 1.98
236 241 4.173594 TCGGGGAGACAGGTAGATAGATA 58.826 47.826 0.00 0.00 0.00 1.98
237 242 4.789159 TCGGGGAGACAGGTAGATAGATAT 59.211 45.833 0.00 0.00 0.00 1.63
239 244 5.591067 CGGGGAGACAGGTAGATAGATATTC 59.409 48.000 0.00 0.00 0.00 1.75
240 245 5.894964 GGGGAGACAGGTAGATAGATATTCC 59.105 48.000 0.00 0.00 0.00 3.01
241 246 6.297948 GGGGAGACAGGTAGATAGATATTCCT 60.298 46.154 0.00 0.00 0.00 3.36
242 247 7.186268 GGGAGACAGGTAGATAGATATTCCTT 58.814 42.308 0.00 0.00 0.00 3.36
243 248 7.340999 GGGAGACAGGTAGATAGATATTCCTTC 59.659 44.444 0.00 0.00 0.00 3.46
244 249 7.066525 GGAGACAGGTAGATAGATATTCCTTCG 59.933 44.444 0.00 0.00 0.00 3.79
245 250 6.887545 AGACAGGTAGATAGATATTCCTTCGG 59.112 42.308 0.00 0.00 0.00 4.30
246 251 6.553857 ACAGGTAGATAGATATTCCTTCGGT 58.446 40.000 0.00 0.00 0.00 4.69
247 252 7.011382 ACAGGTAGATAGATATTCCTTCGGTT 58.989 38.462 0.00 0.00 0.00 4.44
248 253 7.509659 ACAGGTAGATAGATATTCCTTCGGTTT 59.490 37.037 0.00 0.00 0.00 3.27
249 254 8.368668 CAGGTAGATAGATATTCCTTCGGTTTT 58.631 37.037 0.00 0.00 0.00 2.43
250 255 9.597681 AGGTAGATAGATATTCCTTCGGTTTTA 57.402 33.333 0.00 0.00 0.00 1.52
251 256 9.857957 GGTAGATAGATATTCCTTCGGTTTTAG 57.142 37.037 0.00 0.00 0.00 1.85
252 257 9.857957 GTAGATAGATATTCCTTCGGTTTTAGG 57.142 37.037 0.00 0.00 0.00 2.69
253 258 7.908453 AGATAGATATTCCTTCGGTTTTAGGG 58.092 38.462 0.00 0.00 32.20 3.53
254 259 5.306114 AGATATTCCTTCGGTTTTAGGGG 57.694 43.478 0.00 0.00 32.20 4.79
255 260 4.725304 AGATATTCCTTCGGTTTTAGGGGT 59.275 41.667 0.00 0.00 32.20 4.95
256 261 5.907079 AGATATTCCTTCGGTTTTAGGGGTA 59.093 40.000 0.00 0.00 32.20 3.69
257 262 3.986996 TTCCTTCGGTTTTAGGGGTAG 57.013 47.619 0.00 0.00 32.20 3.18
258 263 2.906568 TCCTTCGGTTTTAGGGGTAGT 58.093 47.619 0.00 0.00 32.20 2.73
259 264 2.568509 TCCTTCGGTTTTAGGGGTAGTG 59.431 50.000 0.00 0.00 32.20 2.74
260 265 2.355412 CCTTCGGTTTTAGGGGTAGTGG 60.355 54.545 0.00 0.00 0.00 4.00
261 266 2.323999 TCGGTTTTAGGGGTAGTGGA 57.676 50.000 0.00 0.00 0.00 4.02
262 267 2.836667 TCGGTTTTAGGGGTAGTGGAT 58.163 47.619 0.00 0.00 0.00 3.41
263 268 3.992999 TCGGTTTTAGGGGTAGTGGATA 58.007 45.455 0.00 0.00 0.00 2.59
264 269 3.962718 TCGGTTTTAGGGGTAGTGGATAG 59.037 47.826 0.00 0.00 0.00 2.08
265 270 3.962718 CGGTTTTAGGGGTAGTGGATAGA 59.037 47.826 0.00 0.00 0.00 1.98
266 271 4.591924 CGGTTTTAGGGGTAGTGGATAGAT 59.408 45.833 0.00 0.00 0.00 1.98
267 272 5.776716 CGGTTTTAGGGGTAGTGGATAGATA 59.223 44.000 0.00 0.00 0.00 1.98
268 273 6.071503 CGGTTTTAGGGGTAGTGGATAGATAG 60.072 46.154 0.00 0.00 0.00 2.08
269 274 6.786461 GGTTTTAGGGGTAGTGGATAGATAGT 59.214 42.308 0.00 0.00 0.00 2.12
270 275 7.952368 GGTTTTAGGGGTAGTGGATAGATAGTA 59.048 40.741 0.00 0.00 0.00 1.82
271 276 8.801299 GTTTTAGGGGTAGTGGATAGATAGTAC 58.199 40.741 0.00 0.00 0.00 2.73
272 277 7.901804 TTAGGGGTAGTGGATAGATAGTACT 57.098 40.000 0.00 0.00 0.00 2.73
273 278 6.800223 AGGGGTAGTGGATAGATAGTACTT 57.200 41.667 0.00 0.00 0.00 2.24
274 279 6.792424 AGGGGTAGTGGATAGATAGTACTTC 58.208 44.000 0.00 0.00 0.00 3.01
275 280 5.951148 GGGGTAGTGGATAGATAGTACTTCC 59.049 48.000 0.00 1.61 0.00 3.46
276 281 6.240527 GGGGTAGTGGATAGATAGTACTTCCT 60.241 46.154 0.00 1.08 31.79 3.36
277 282 6.885918 GGGTAGTGGATAGATAGTACTTCCTC 59.114 46.154 0.00 2.53 31.79 3.71
278 283 6.885918 GGTAGTGGATAGATAGTACTTCCTCC 59.114 46.154 0.00 8.52 0.00 4.30
279 284 5.562635 AGTGGATAGATAGTACTTCCTCCG 58.437 45.833 0.00 0.00 0.00 4.63
280 285 5.310068 AGTGGATAGATAGTACTTCCTCCGA 59.690 44.000 0.00 0.00 0.00 4.55
281 286 6.012333 AGTGGATAGATAGTACTTCCTCCGAT 60.012 42.308 0.00 0.00 0.00 4.18
282 287 6.660094 GTGGATAGATAGTACTTCCTCCGATT 59.340 42.308 0.00 0.00 0.00 3.34
283 288 6.885376 TGGATAGATAGTACTTCCTCCGATTC 59.115 42.308 0.00 0.00 0.00 2.52
284 289 6.885376 GGATAGATAGTACTTCCTCCGATTCA 59.115 42.308 0.00 0.00 0.00 2.57
285 290 7.558444 GGATAGATAGTACTTCCTCCGATTCAT 59.442 40.741 0.00 0.00 0.00 2.57
286 291 9.616156 GATAGATAGTACTTCCTCCGATTCATA 57.384 37.037 0.00 0.00 0.00 2.15
288 293 8.887264 AGATAGTACTTCCTCCGATTCATATT 57.113 34.615 0.00 0.00 0.00 1.28
289 294 9.976776 AGATAGTACTTCCTCCGATTCATATTA 57.023 33.333 0.00 0.00 0.00 0.98
293 298 9.712305 AGTACTTCCTCCGATTCATATTAATTG 57.288 33.333 0.00 0.00 0.00 2.32
294 299 9.490379 GTACTTCCTCCGATTCATATTAATTGT 57.510 33.333 0.00 0.00 0.00 2.71
295 300 8.608844 ACTTCCTCCGATTCATATTAATTGTC 57.391 34.615 0.00 0.00 0.00 3.18
296 301 7.385205 ACTTCCTCCGATTCATATTAATTGTCG 59.615 37.037 0.00 0.00 0.00 4.35
297 302 6.755206 TCCTCCGATTCATATTAATTGTCGT 58.245 36.000 0.00 0.00 0.00 4.34
298 303 7.888424 TCCTCCGATTCATATTAATTGTCGTA 58.112 34.615 0.00 0.00 0.00 3.43
299 304 8.027189 TCCTCCGATTCATATTAATTGTCGTAG 58.973 37.037 0.00 0.00 0.00 3.51
300 305 7.813148 CCTCCGATTCATATTAATTGTCGTAGT 59.187 37.037 0.00 0.00 0.00 2.73
301 306 9.193133 CTCCGATTCATATTAATTGTCGTAGTT 57.807 33.333 0.00 0.00 0.00 2.24
302 307 9.537192 TCCGATTCATATTAATTGTCGTAGTTT 57.463 29.630 0.00 0.00 0.00 2.66
316 321 9.971922 ATTGTCGTAGTTTTAGTAAGTACAACT 57.028 29.630 6.21 6.21 0.00 3.16
333 338 8.991243 AGTACAACTAGTAGATAGATAGAGCG 57.009 38.462 3.59 0.00 35.30 5.03
334 339 8.805175 AGTACAACTAGTAGATAGATAGAGCGA 58.195 37.037 3.59 0.00 35.30 4.93
335 340 9.421806 GTACAACTAGTAGATAGATAGAGCGAA 57.578 37.037 3.59 0.00 35.30 4.70
337 342 9.158233 ACAACTAGTAGATAGATAGAGCGAATC 57.842 37.037 3.59 0.00 35.30 2.52
338 343 9.157104 CAACTAGTAGATAGATAGAGCGAATCA 57.843 37.037 3.59 0.00 35.30 2.57
339 344 9.727859 AACTAGTAGATAGATAGAGCGAATCAA 57.272 33.333 3.59 0.00 35.30 2.57
340 345 9.378551 ACTAGTAGATAGATAGAGCGAATCAAG 57.621 37.037 3.59 0.00 35.30 3.02
341 346 9.378551 CTAGTAGATAGATAGAGCGAATCAAGT 57.621 37.037 0.00 0.00 32.76 3.16
342 347 8.630054 AGTAGATAGATAGAGCGAATCAAGTT 57.370 34.615 0.00 0.00 0.00 2.66
343 348 8.511321 AGTAGATAGATAGAGCGAATCAAGTTG 58.489 37.037 0.00 0.00 0.00 3.16
344 349 7.283625 AGATAGATAGAGCGAATCAAGTTGT 57.716 36.000 2.11 0.00 0.00 3.32
345 350 7.144661 AGATAGATAGAGCGAATCAAGTTGTG 58.855 38.462 2.11 0.00 0.00 3.33
346 351 4.437239 AGATAGAGCGAATCAAGTTGTGG 58.563 43.478 2.11 0.00 0.00 4.17
347 352 2.550830 AGAGCGAATCAAGTTGTGGT 57.449 45.000 2.11 0.00 0.00 4.16
348 353 2.851195 AGAGCGAATCAAGTTGTGGTT 58.149 42.857 2.11 0.00 31.28 3.67
349 354 2.549754 AGAGCGAATCAAGTTGTGGTTG 59.450 45.455 2.11 0.00 27.56 3.77
350 355 1.608590 AGCGAATCAAGTTGTGGTTGG 59.391 47.619 2.11 0.36 27.56 3.77
351 356 1.606668 GCGAATCAAGTTGTGGTTGGA 59.393 47.619 2.11 0.00 27.56 3.53
352 357 2.228822 GCGAATCAAGTTGTGGTTGGAT 59.771 45.455 2.11 0.00 27.56 3.41
353 358 3.825308 CGAATCAAGTTGTGGTTGGATG 58.175 45.455 2.11 0.00 27.56 3.51
354 359 3.366273 CGAATCAAGTTGTGGTTGGATGG 60.366 47.826 2.11 0.00 27.56 3.51
355 360 2.746279 TCAAGTTGTGGTTGGATGGT 57.254 45.000 2.11 0.00 0.00 3.55
356 361 3.025322 TCAAGTTGTGGTTGGATGGTT 57.975 42.857 2.11 0.00 0.00 3.67
357 362 4.171878 TCAAGTTGTGGTTGGATGGTTA 57.828 40.909 2.11 0.00 0.00 2.85
358 363 4.141287 TCAAGTTGTGGTTGGATGGTTAG 58.859 43.478 2.11 0.00 0.00 2.34
359 364 4.141287 CAAGTTGTGGTTGGATGGTTAGA 58.859 43.478 0.00 0.00 0.00 2.10
360 365 4.021102 AGTTGTGGTTGGATGGTTAGAG 57.979 45.455 0.00 0.00 0.00 2.43
361 366 3.650942 AGTTGTGGTTGGATGGTTAGAGA 59.349 43.478 0.00 0.00 0.00 3.10
362 367 3.981071 TGTGGTTGGATGGTTAGAGAG 57.019 47.619 0.00 0.00 0.00 3.20
363 368 3.516586 TGTGGTTGGATGGTTAGAGAGA 58.483 45.455 0.00 0.00 0.00 3.10
364 369 3.260884 TGTGGTTGGATGGTTAGAGAGAC 59.739 47.826 0.00 0.00 0.00 3.36
365 370 3.515901 GTGGTTGGATGGTTAGAGAGACT 59.484 47.826 0.00 0.00 0.00 3.24
366 371 3.515502 TGGTTGGATGGTTAGAGAGACTG 59.484 47.826 0.00 0.00 0.00 3.51
367 372 3.515901 GGTTGGATGGTTAGAGAGACTGT 59.484 47.826 0.00 0.00 0.00 3.55
368 373 4.499183 GTTGGATGGTTAGAGAGACTGTG 58.501 47.826 0.00 0.00 0.00 3.66
369 374 3.099905 TGGATGGTTAGAGAGACTGTGG 58.900 50.000 0.00 0.00 0.00 4.17
370 375 3.100671 GGATGGTTAGAGAGACTGTGGT 58.899 50.000 0.00 0.00 0.00 4.16
371 376 4.264217 TGGATGGTTAGAGAGACTGTGGTA 60.264 45.833 0.00 0.00 0.00 3.25
372 377 4.896482 GGATGGTTAGAGAGACTGTGGTAT 59.104 45.833 0.00 0.00 0.00 2.73
373 378 5.010213 GGATGGTTAGAGAGACTGTGGTATC 59.990 48.000 0.00 0.00 34.24 2.24
374 379 4.279145 TGGTTAGAGAGACTGTGGTATCC 58.721 47.826 0.00 0.00 34.54 2.59
375 380 3.637694 GGTTAGAGAGACTGTGGTATCCC 59.362 52.174 0.00 0.00 34.54 3.85
376 381 4.279145 GTTAGAGAGACTGTGGTATCCCA 58.721 47.826 0.00 0.00 38.87 4.37
377 382 3.025322 AGAGAGACTGTGGTATCCCAG 57.975 52.381 0.00 0.00 42.94 4.45
378 383 1.410882 GAGAGACTGTGGTATCCCAGC 59.589 57.143 0.00 0.00 42.94 4.85
379 384 0.466124 GAGACTGTGGTATCCCAGCC 59.534 60.000 0.00 0.00 42.94 4.85
380 385 0.983378 AGACTGTGGTATCCCAGCCC 60.983 60.000 0.00 0.00 42.94 5.19
381 386 1.229820 ACTGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
382 387 0.624500 ACTGTGGTATCCCAGCCCAT 60.625 55.000 0.00 0.00 42.94 4.00
383 388 0.552848 CTGTGGTATCCCAGCCCATT 59.447 55.000 0.00 0.00 42.94 3.16
384 389 1.774254 CTGTGGTATCCCAGCCCATTA 59.226 52.381 0.00 0.00 42.94 1.90
385 390 2.174639 CTGTGGTATCCCAGCCCATTAA 59.825 50.000 0.00 0.00 42.94 1.40
386 391 2.174639 TGTGGTATCCCAGCCCATTAAG 59.825 50.000 0.00 0.00 42.94 1.85
387 392 1.780309 TGGTATCCCAGCCCATTAAGG 59.220 52.381 0.00 0.00 35.17 2.69
388 393 1.780919 GGTATCCCAGCCCATTAAGGT 59.219 52.381 0.00 0.00 34.66 3.50
389 394 2.177016 GGTATCCCAGCCCATTAAGGTT 59.823 50.000 0.00 0.00 34.66 3.50
390 395 2.755952 ATCCCAGCCCATTAAGGTTC 57.244 50.000 0.00 0.00 34.66 3.62
391 396 1.377690 TCCCAGCCCATTAAGGTTCA 58.622 50.000 0.00 0.00 34.66 3.18
392 397 1.713647 TCCCAGCCCATTAAGGTTCAA 59.286 47.619 0.00 0.00 34.66 2.69
393 398 2.110899 TCCCAGCCCATTAAGGTTCAAA 59.889 45.455 0.00 0.00 34.66 2.69
394 399 3.106827 CCCAGCCCATTAAGGTTCAAAT 58.893 45.455 0.00 0.00 34.66 2.32
395 400 3.132824 CCCAGCCCATTAAGGTTCAAATC 59.867 47.826 0.00 0.00 34.66 2.17
396 401 3.132824 CCAGCCCATTAAGGTTCAAATCC 59.867 47.826 0.00 0.00 34.66 3.01
397 402 4.026052 CAGCCCATTAAGGTTCAAATCCT 58.974 43.478 0.00 0.00 36.81 3.24
398 403 4.026052 AGCCCATTAAGGTTCAAATCCTG 58.974 43.478 0.00 0.00 35.27 3.86
399 404 3.132824 GCCCATTAAGGTTCAAATCCTGG 59.867 47.826 0.00 0.00 35.27 4.45
400 405 4.352893 CCCATTAAGGTTCAAATCCTGGT 58.647 43.478 0.00 0.00 35.27 4.00
401 406 4.160252 CCCATTAAGGTTCAAATCCTGGTG 59.840 45.833 0.00 0.00 35.27 4.17
402 407 4.381932 CCATTAAGGTTCAAATCCTGGTGC 60.382 45.833 0.00 0.00 35.27 5.01
403 408 2.683211 AAGGTTCAAATCCTGGTGCT 57.317 45.000 0.00 0.00 35.27 4.40
404 409 2.206576 AGGTTCAAATCCTGGTGCTC 57.793 50.000 0.00 0.00 33.62 4.26
405 410 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
406 411 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
407 412 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
408 413 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
409 414 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
410 415 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
411 416 1.549203 AATCCTGGTGCTCGCATTTT 58.451 45.000 0.00 0.00 0.00 1.82
412 417 2.418368 ATCCTGGTGCTCGCATTTTA 57.582 45.000 0.00 0.00 0.00 1.52
413 418 2.192664 TCCTGGTGCTCGCATTTTAA 57.807 45.000 0.00 0.00 0.00 1.52
414 419 2.083774 TCCTGGTGCTCGCATTTTAAG 58.916 47.619 0.00 0.00 0.00 1.85
415 420 2.083774 CCTGGTGCTCGCATTTTAAGA 58.916 47.619 0.00 0.00 0.00 2.10
416 421 2.684881 CCTGGTGCTCGCATTTTAAGAT 59.315 45.455 0.00 0.00 0.00 2.40
417 422 3.488047 CCTGGTGCTCGCATTTTAAGATG 60.488 47.826 1.63 1.63 0.00 2.90
418 423 3.342719 TGGTGCTCGCATTTTAAGATGA 58.657 40.909 10.05 0.00 0.00 2.92
419 424 3.947196 TGGTGCTCGCATTTTAAGATGAT 59.053 39.130 10.05 0.00 0.00 2.45
420 425 5.122519 TGGTGCTCGCATTTTAAGATGATA 58.877 37.500 10.05 0.00 0.00 2.15
421 426 5.764686 TGGTGCTCGCATTTTAAGATGATAT 59.235 36.000 10.05 0.00 0.00 1.63
422 427 6.082338 GGTGCTCGCATTTTAAGATGATATG 58.918 40.000 10.05 0.00 0.00 1.78
423 428 6.293626 GGTGCTCGCATTTTAAGATGATATGT 60.294 38.462 10.05 0.00 0.00 2.29
424 429 7.134815 GTGCTCGCATTTTAAGATGATATGTT 58.865 34.615 10.05 0.00 0.00 2.71
425 430 7.112565 GTGCTCGCATTTTAAGATGATATGTTG 59.887 37.037 10.05 0.00 0.00 3.33
426 431 6.580041 GCTCGCATTTTAAGATGATATGTTGG 59.420 38.462 10.05 0.00 0.00 3.77
427 432 6.437928 TCGCATTTTAAGATGATATGTTGGC 58.562 36.000 10.05 0.00 0.00 4.52
428 433 6.262944 TCGCATTTTAAGATGATATGTTGGCT 59.737 34.615 10.05 0.00 0.00 4.75
429 434 6.580041 CGCATTTTAAGATGATATGTTGGCTC 59.420 38.462 10.05 0.00 0.00 4.70
430 435 6.580041 GCATTTTAAGATGATATGTTGGCTCG 59.420 38.462 10.05 0.00 0.00 5.03
431 436 6.618287 TTTTAAGATGATATGTTGGCTCGG 57.382 37.500 0.00 0.00 0.00 4.63
432 437 3.845781 AAGATGATATGTTGGCTCGGT 57.154 42.857 0.00 0.00 0.00 4.69
433 438 3.117491 AGATGATATGTTGGCTCGGTG 57.883 47.619 0.00 0.00 0.00 4.94
434 439 2.435805 AGATGATATGTTGGCTCGGTGT 59.564 45.455 0.00 0.00 0.00 4.16
435 440 2.779755 TGATATGTTGGCTCGGTGTT 57.220 45.000 0.00 0.00 0.00 3.32
436 441 3.066291 TGATATGTTGGCTCGGTGTTT 57.934 42.857 0.00 0.00 0.00 2.83
437 442 3.417101 TGATATGTTGGCTCGGTGTTTT 58.583 40.909 0.00 0.00 0.00 2.43
438 443 3.190327 TGATATGTTGGCTCGGTGTTTTG 59.810 43.478 0.00 0.00 0.00 2.44
439 444 1.686355 ATGTTGGCTCGGTGTTTTGA 58.314 45.000 0.00 0.00 0.00 2.69
440 445 1.464734 TGTTGGCTCGGTGTTTTGAA 58.535 45.000 0.00 0.00 0.00 2.69
441 446 1.403679 TGTTGGCTCGGTGTTTTGAAG 59.596 47.619 0.00 0.00 0.00 3.02
442 447 1.028905 TTGGCTCGGTGTTTTGAAGG 58.971 50.000 0.00 0.00 0.00 3.46
443 448 0.181587 TGGCTCGGTGTTTTGAAGGA 59.818 50.000 0.00 0.00 0.00 3.36
444 449 0.875059 GGCTCGGTGTTTTGAAGGAG 59.125 55.000 0.00 0.00 0.00 3.69
445 450 0.238553 GCTCGGTGTTTTGAAGGAGC 59.761 55.000 0.00 0.00 39.91 4.70
446 451 1.884235 CTCGGTGTTTTGAAGGAGCT 58.116 50.000 0.00 0.00 0.00 4.09
447 452 1.801178 CTCGGTGTTTTGAAGGAGCTC 59.199 52.381 4.71 4.71 0.00 4.09
448 453 1.140052 TCGGTGTTTTGAAGGAGCTCA 59.860 47.619 17.19 0.00 0.00 4.26
449 454 2.154462 CGGTGTTTTGAAGGAGCTCAT 58.846 47.619 17.19 5.25 0.00 2.90
450 455 3.007506 TCGGTGTTTTGAAGGAGCTCATA 59.992 43.478 17.19 0.00 0.00 2.15
451 456 3.372206 CGGTGTTTTGAAGGAGCTCATAG 59.628 47.826 17.19 0.00 0.00 2.23
452 457 3.691609 GGTGTTTTGAAGGAGCTCATAGG 59.308 47.826 17.19 0.00 0.00 2.57
453 458 3.691609 GTGTTTTGAAGGAGCTCATAGGG 59.308 47.826 17.19 0.00 0.00 3.53
454 459 3.587061 TGTTTTGAAGGAGCTCATAGGGA 59.413 43.478 17.19 0.00 0.00 4.20
455 460 4.228210 TGTTTTGAAGGAGCTCATAGGGAT 59.772 41.667 17.19 0.00 0.00 3.85
456 461 5.428457 TGTTTTGAAGGAGCTCATAGGGATA 59.572 40.000 17.19 0.00 0.00 2.59
457 462 5.815233 TTTGAAGGAGCTCATAGGGATAG 57.185 43.478 17.19 0.00 0.00 2.08
458 463 4.749048 TGAAGGAGCTCATAGGGATAGA 57.251 45.455 17.19 0.00 0.00 1.98
459 464 4.671831 TGAAGGAGCTCATAGGGATAGAG 58.328 47.826 17.19 0.00 0.00 2.43
460 465 4.107149 TGAAGGAGCTCATAGGGATAGAGT 59.893 45.833 17.19 0.00 0.00 3.24
461 466 4.046286 AGGAGCTCATAGGGATAGAGTG 57.954 50.000 17.19 0.00 0.00 3.51
462 467 3.401002 AGGAGCTCATAGGGATAGAGTGT 59.599 47.826 17.19 0.00 0.00 3.55
463 468 3.509575 GGAGCTCATAGGGATAGAGTGTG 59.490 52.174 17.19 0.00 0.00 3.82
464 469 2.896685 AGCTCATAGGGATAGAGTGTGC 59.103 50.000 0.00 0.00 0.00 4.57
465 470 2.352225 GCTCATAGGGATAGAGTGTGCG 60.352 54.545 0.00 0.00 0.00 5.34
466 471 1.613925 TCATAGGGATAGAGTGTGCGC 59.386 52.381 0.00 0.00 0.00 6.09
467 472 1.341209 CATAGGGATAGAGTGTGCGCA 59.659 52.381 5.66 5.66 0.00 6.09
468 473 1.704641 TAGGGATAGAGTGTGCGCAT 58.295 50.000 15.91 0.00 0.00 4.73
469 474 0.105593 AGGGATAGAGTGTGCGCATG 59.894 55.000 15.91 0.00 0.00 4.06
470 475 0.179073 GGGATAGAGTGTGCGCATGT 60.179 55.000 15.91 0.00 0.00 3.21
471 476 0.933097 GGATAGAGTGTGCGCATGTG 59.067 55.000 15.91 0.66 0.00 3.21
472 477 0.302890 GATAGAGTGTGCGCATGTGC 59.697 55.000 24.25 24.25 37.78 4.57
473 478 0.391528 ATAGAGTGTGCGCATGTGCA 60.392 50.000 29.26 29.26 43.95 4.57
481 486 1.666054 TGCGCATGTGCATTCATAGA 58.334 45.000 29.26 4.60 40.62 1.98
482 487 1.600485 TGCGCATGTGCATTCATAGAG 59.400 47.619 29.26 0.00 40.62 2.43
483 488 1.069432 GCGCATGTGCATTCATAGAGG 60.069 52.381 25.87 0.00 42.21 3.69
484 489 2.216046 CGCATGTGCATTCATAGAGGT 58.784 47.619 5.77 0.00 42.21 3.85
485 490 2.032290 CGCATGTGCATTCATAGAGGTG 60.032 50.000 5.77 0.00 42.21 4.00
486 491 3.208594 GCATGTGCATTCATAGAGGTGA 58.791 45.455 0.00 0.00 41.59 4.02
487 492 3.250280 GCATGTGCATTCATAGAGGTGAG 59.750 47.826 0.00 0.00 41.59 3.51
488 493 4.449131 CATGTGCATTCATAGAGGTGAGT 58.551 43.478 0.00 0.00 0.00 3.41
489 494 3.865446 TGTGCATTCATAGAGGTGAGTG 58.135 45.455 0.00 0.00 38.45 3.51
490 495 3.261643 TGTGCATTCATAGAGGTGAGTGT 59.738 43.478 0.00 0.00 37.92 3.55
491 496 4.466015 TGTGCATTCATAGAGGTGAGTGTA 59.534 41.667 0.00 0.00 37.92 2.90
492 497 5.129320 TGTGCATTCATAGAGGTGAGTGTAT 59.871 40.000 0.00 0.00 37.92 2.29
493 498 5.464722 GTGCATTCATAGAGGTGAGTGTATG 59.535 44.000 0.00 0.00 37.92 2.39
494 499 4.450419 GCATTCATAGAGGTGAGTGTATGC 59.550 45.833 0.00 0.00 37.92 3.14
495 500 3.990318 TCATAGAGGTGAGTGTATGCG 57.010 47.619 0.00 0.00 0.00 4.73
496 501 2.034685 TCATAGAGGTGAGTGTATGCGC 59.965 50.000 0.00 0.00 0.00 6.09
497 502 0.380733 TAGAGGTGAGTGTATGCGCG 59.619 55.000 0.00 0.00 0.00 6.86
498 503 1.153823 GAGGTGAGTGTATGCGCGT 60.154 57.895 8.43 7.55 0.00 6.01
499 504 1.413767 GAGGTGAGTGTATGCGCGTG 61.414 60.000 13.61 0.00 0.00 5.34
500 505 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
501 506 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
502 507 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
503 508 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
504 509 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
505 510 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
506 511 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
507 512 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
508 513 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
511 516 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
512 517 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
513 518 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
514 519 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
515 520 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
516 521 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
517 522 2.603110 CGTGTATATGAGCGCTTGTGTT 59.397 45.455 13.26 0.00 0.00 3.32
518 523 3.062099 CGTGTATATGAGCGCTTGTGTTT 59.938 43.478 13.26 0.00 0.00 2.83
519 524 4.334443 GTGTATATGAGCGCTTGTGTTTG 58.666 43.478 13.26 0.00 0.00 2.93
520 525 4.000325 TGTATATGAGCGCTTGTGTTTGT 59.000 39.130 13.26 0.00 0.00 2.83
521 526 5.062934 GTGTATATGAGCGCTTGTGTTTGTA 59.937 40.000 13.26 0.00 0.00 2.41
522 527 2.969443 ATGAGCGCTTGTGTTTGTAC 57.031 45.000 13.26 0.00 0.00 2.90
523 528 1.948104 TGAGCGCTTGTGTTTGTACT 58.052 45.000 13.26 0.00 0.00 2.73
524 529 1.597195 TGAGCGCTTGTGTTTGTACTG 59.403 47.619 13.26 0.00 0.00 2.74
525 530 1.864711 GAGCGCTTGTGTTTGTACTGA 59.135 47.619 13.26 0.00 0.00 3.41
526 531 2.480419 GAGCGCTTGTGTTTGTACTGAT 59.520 45.455 13.26 0.00 0.00 2.90
527 532 2.224079 AGCGCTTGTGTTTGTACTGATG 59.776 45.455 2.64 0.00 0.00 3.07
528 533 2.032030 GCGCTTGTGTTTGTACTGATGT 60.032 45.455 0.00 0.00 0.00 3.06
529 534 3.548014 GCGCTTGTGTTTGTACTGATGTT 60.548 43.478 0.00 0.00 0.00 2.71
530 535 4.319190 GCGCTTGTGTTTGTACTGATGTTA 60.319 41.667 0.00 0.00 0.00 2.41
531 536 5.743467 CGCTTGTGTTTGTACTGATGTTAA 58.257 37.500 0.00 0.00 0.00 2.01
532 537 6.195868 CGCTTGTGTTTGTACTGATGTTAAA 58.804 36.000 0.00 0.00 0.00 1.52
533 538 6.689241 CGCTTGTGTTTGTACTGATGTTAAAA 59.311 34.615 0.00 0.00 0.00 1.52
534 539 7.219154 CGCTTGTGTTTGTACTGATGTTAAAAA 59.781 33.333 0.00 0.00 0.00 1.94
583 589 3.181478 ACTGGTTAATTCGACCGATCTCC 60.181 47.826 6.47 0.00 40.13 3.71
584 590 2.761767 TGGTTAATTCGACCGATCTCCA 59.238 45.455 6.47 0.00 40.13 3.86
627 636 3.764885 AGCAATCGTTTTGTAGATGCC 57.235 42.857 0.00 0.00 0.00 4.40
700 712 2.644992 GAGCGGTGCACCCAAAAG 59.355 61.111 29.95 16.43 0.00 2.27
703 715 2.485795 GCGGTGCACCCAAAAGTGA 61.486 57.895 29.95 0.00 40.34 3.41
705 717 0.457851 CGGTGCACCCAAAAGTGAAA 59.542 50.000 29.95 0.00 40.34 2.69
707 719 2.482864 GGTGCACCCAAAAGTGAAATG 58.517 47.619 26.31 0.00 40.34 2.32
709 721 1.483827 TGCACCCAAAAGTGAAATGCA 59.516 42.857 0.00 0.00 40.34 3.96
710 722 2.137523 GCACCCAAAAGTGAAATGCAG 58.862 47.619 0.00 0.00 40.34 4.41
711 723 2.483538 GCACCCAAAAGTGAAATGCAGT 60.484 45.455 0.00 0.00 40.34 4.40
712 724 3.243704 GCACCCAAAAGTGAAATGCAGTA 60.244 43.478 0.00 0.00 40.34 2.74
962 983 4.602259 CGGGGAGCGTGTGTGTGT 62.602 66.667 0.00 0.00 0.00 3.72
963 984 2.972505 GGGGAGCGTGTGTGTGTG 60.973 66.667 0.00 0.00 0.00 3.82
964 985 2.203015 GGGAGCGTGTGTGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
965 986 2.534019 GGGAGCGTGTGTGTGTGTG 61.534 63.158 0.00 0.00 0.00 3.82
966 987 1.813753 GGAGCGTGTGTGTGTGTGT 60.814 57.895 0.00 0.00 0.00 3.72
972 993 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1083 1104 2.490217 CGGCTCTACTGGTCCACG 59.510 66.667 0.00 0.00 0.00 4.94
1292 1313 0.100861 GGTAAGCTTCGAGTCTCCGG 59.899 60.000 0.00 0.00 0.00 5.14
1317 1338 0.823460 GTCCTCTGCCTCTTCTCCTG 59.177 60.000 0.00 0.00 0.00 3.86
1320 1341 0.612229 CTCTGCCTCTTCTCCTGCAA 59.388 55.000 0.00 0.00 32.58 4.08
1585 1607 5.986501 TCCAACTACTTTTCTCTCTCTCC 57.013 43.478 0.00 0.00 0.00 3.71
1589 1685 3.338519 ACTACTTTTCTCTCTCTCCCCCT 59.661 47.826 0.00 0.00 0.00 4.79
1645 1741 2.478539 GCGCCTTTAATTGCCTTCTCTG 60.479 50.000 0.00 0.00 0.00 3.35
1654 1750 0.538057 TGCCTTCTCTGCAAGGGTTG 60.538 55.000 4.36 0.00 43.08 3.77
1704 1803 2.028930 GTCTTCCTCAGTTCGTCCACAT 60.029 50.000 0.00 0.00 0.00 3.21
1719 1819 2.969262 TCCACATCAACACTGTAGGTCA 59.031 45.455 0.00 0.00 0.00 4.02
1728 1828 4.457834 ACACTGTAGGTCATCAGCTTAC 57.542 45.455 0.00 0.00 35.37 2.34
1729 1829 3.195825 ACACTGTAGGTCATCAGCTTACC 59.804 47.826 0.00 0.00 35.37 2.85
1745 1846 6.313905 TCAGCTTACCGAGAAGATGAATTTTC 59.686 38.462 12.83 0.00 46.04 2.29
1756 1857 9.183368 GAGAAGATGAATTTTCTCTGGGTAATT 57.817 33.333 13.59 0.00 43.70 1.40
1766 1867 5.912149 TCTCTGGGTAATTGCCATTAGAT 57.088 39.130 14.98 0.00 0.00 1.98
1771 1872 7.781056 TCTGGGTAATTGCCATTAGATTTTTC 58.219 34.615 14.98 0.00 0.00 2.29
1774 1875 5.173131 GGTAATTGCCATTAGATTTTTCGCG 59.827 40.000 7.82 0.00 0.00 5.87
1807 1908 6.455360 TCTGCAAAGTTTTCACAGAAATCT 57.545 33.333 9.30 0.00 34.59 2.40
1826 1927 7.724061 AGAAATCTGGTTAACCTTTAGCTCAAA 59.276 33.333 24.78 0.09 36.82 2.69
1882 1983 5.047092 ACAATTCTCAATCCCCAATTGACAC 60.047 40.000 7.12 0.00 46.96 3.67
1896 1997 5.863397 CCAATTGACACGCATAAAACAAGAT 59.137 36.000 7.12 0.00 0.00 2.40
1897 1998 6.365789 CCAATTGACACGCATAAAACAAGATT 59.634 34.615 7.12 0.00 0.00 2.40
1898 1999 6.932901 ATTGACACGCATAAAACAAGATTG 57.067 33.333 0.00 0.00 0.00 2.67
1899 2000 5.431420 TGACACGCATAAAACAAGATTGT 57.569 34.783 0.00 0.00 44.72 2.71
1900 2001 6.546972 TGACACGCATAAAACAAGATTGTA 57.453 33.333 0.00 0.00 41.31 2.41
1901 2002 6.598525 TGACACGCATAAAACAAGATTGTAG 58.401 36.000 0.00 0.00 41.31 2.74
1902 2003 5.938322 ACACGCATAAAACAAGATTGTAGG 58.062 37.500 0.00 0.00 41.31 3.18
1936 2037 3.255149 GGATCCAACTGATTGATGCCATC 59.745 47.826 6.95 0.00 38.15 3.51
2000 2101 8.573885 GGATGCAGAATGATAAAAGAATCATGA 58.426 33.333 0.00 0.00 44.08 3.07
2001 2102 9.961265 GATGCAGAATGATAAAAGAATCATGAA 57.039 29.630 0.00 0.00 44.08 2.57
2035 2136 8.752254 TGATAAATAAAATACTGAAGAGTCGCG 58.248 33.333 0.00 0.00 33.21 5.87
2036 2137 5.968387 AATAAAATACTGAAGAGTCGCGG 57.032 39.130 6.13 0.00 33.21 6.46
2043 2144 1.226717 GAAGAGTCGCGGCTAGTGG 60.227 63.158 15.95 0.00 0.00 4.00
2075 2176 2.107705 TCGTCTGCGAGATCCCTTC 58.892 57.895 0.00 0.00 42.81 3.46
2076 2177 0.394488 TCGTCTGCGAGATCCCTTCT 60.394 55.000 0.00 0.00 42.81 2.85
2083 2184 1.537990 GCGAGATCCCTTCTTCTGCTC 60.538 57.143 0.00 0.00 33.74 4.26
2126 2227 2.622942 TGCAAATGTTCCACCTTCTGAC 59.377 45.455 0.00 0.00 0.00 3.51
2140 2241 4.043059 ACCTTCTGACTACTCTACACCTGA 59.957 45.833 0.00 0.00 0.00 3.86
2141 2242 5.197451 CCTTCTGACTACTCTACACCTGAT 58.803 45.833 0.00 0.00 0.00 2.90
2170 2273 3.827898 CGGCAGGACGGAGGAGAC 61.828 72.222 0.00 0.00 0.00 3.36
2446 2578 2.558795 TGTTAGTGAGAGTGAGACTGCC 59.441 50.000 0.00 0.00 0.00 4.85
2447 2579 2.823154 GTTAGTGAGAGTGAGACTGCCT 59.177 50.000 0.00 0.00 0.00 4.75
2562 2694 2.440517 TGATGCCATTGCCATGTACT 57.559 45.000 0.00 0.00 36.33 2.73
2587 2725 0.101399 ACCTGTGCATCGATCTCGTC 59.899 55.000 0.00 0.00 40.80 4.20
2608 2746 0.110678 ATGCTCATGGCCTCTCATGG 59.889 55.000 3.32 0.00 43.33 3.66
2628 2767 0.166814 GTGATGGCGTTTCTCTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
2630 2769 0.445436 GATGGCGTTTCTCTGTGCTG 59.555 55.000 0.00 0.00 0.00 4.41
2635 2774 1.333258 GCGTTTCTCTGTGCTGTGTTC 60.333 52.381 0.00 0.00 0.00 3.18
2804 2968 3.470562 CGCTGCGAAGAGAGTTTAAAAC 58.529 45.455 18.66 0.00 0.00 2.43
2836 3000 2.159226 ACGATACCTAAGCTCTGTGTGC 60.159 50.000 0.00 0.00 0.00 4.57
2925 3119 1.701847 ACAGGAGCTGACATTTCCACT 59.298 47.619 0.00 0.00 35.18 4.00
2965 3159 7.771927 AGCTGTTTGTTAGTTACTCCTACTA 57.228 36.000 0.00 0.00 0.00 1.82
2975 3176 9.148104 GTTAGTTACTCCTACTAACCACAATTG 57.852 37.037 3.24 3.24 46.22 2.32
3049 3250 2.480610 CCGGCACCAAATGGATCCG 61.481 63.158 21.39 21.39 45.54 4.18
3173 3385 4.409574 TCCATCAAAAGGCCAATTATGCAT 59.590 37.500 5.01 3.79 0.00 3.96
3174 3386 5.104444 TCCATCAAAAGGCCAATTATGCATT 60.104 36.000 3.54 0.00 33.61 3.56
3176 3388 3.940221 TCAAAAGGCCAATTATGCATTGC 59.060 39.130 3.54 0.46 41.10 3.56
3177 3389 3.630892 AAAGGCCAATTATGCATTGCA 57.369 38.095 14.72 14.72 44.86 4.08
3178 3390 3.630892 AAGGCCAATTATGCATTGCAA 57.369 38.095 16.46 0.00 43.62 4.08
3179 3391 3.188159 AGGCCAATTATGCATTGCAAG 57.812 42.857 16.46 3.71 43.62 4.01
3180 3392 2.767394 AGGCCAATTATGCATTGCAAGA 59.233 40.909 16.46 7.58 43.62 3.02
3197 3409 4.279922 TGCAAGATGATCATATGCTTTGGG 59.720 41.667 30.69 13.51 35.78 4.12
3203 3415 3.327464 TGATCATATGCTTTGGGGATCGA 59.673 43.478 0.00 0.00 35.17 3.59
3214 3426 2.202987 GGATCGACTGCAGGCTGG 60.203 66.667 19.55 2.46 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.178276 TTTTGTTGCCGTTCACCTGT 58.822 45.000 0.00 0.00 0.00 4.00
9 10 0.777631 CAGTGCGAATTTTGTTGCCG 59.222 50.000 0.00 0.00 0.00 5.69
10 11 0.508213 GCAGTGCGAATTTTGTTGCC 59.492 50.000 0.00 0.00 0.00 4.52
88 92 1.468054 CCTCGCTAAATTGCTTGGCAC 60.468 52.381 0.00 0.00 41.42 5.01
95 99 0.521242 CACGCACCTCGCTAAATTGC 60.521 55.000 0.00 0.00 43.23 3.56
130 134 1.148759 GGTTTCGCCGAGCTGATCTC 61.149 60.000 0.00 0.00 38.47 2.75
160 164 6.144402 GCAAAAGATTCTTTTTCGATCAAGCA 59.856 34.615 19.34 0.00 0.00 3.91
161 165 6.364435 AGCAAAAGATTCTTTTTCGATCAAGC 59.636 34.615 19.34 16.34 0.00 4.01
162 166 7.864307 AGCAAAAGATTCTTTTTCGATCAAG 57.136 32.000 19.34 8.80 0.00 3.02
163 167 7.920151 TCAAGCAAAAGATTCTTTTTCGATCAA 59.080 29.630 19.34 2.93 0.00 2.57
164 168 7.424803 TCAAGCAAAAGATTCTTTTTCGATCA 58.575 30.769 19.34 2.86 0.00 2.92
165 169 7.858052 TCAAGCAAAAGATTCTTTTTCGATC 57.142 32.000 19.34 8.47 0.00 3.69
166 170 8.084073 TCATCAAGCAAAAGATTCTTTTTCGAT 58.916 29.630 19.34 15.05 0.00 3.59
167 171 7.424803 TCATCAAGCAAAAGATTCTTTTTCGA 58.575 30.769 19.34 13.79 0.00 3.71
168 172 7.380602 ACTCATCAAGCAAAAGATTCTTTTTCG 59.619 33.333 19.34 11.81 0.00 3.46
169 173 8.485591 CACTCATCAAGCAAAAGATTCTTTTTC 58.514 33.333 19.34 15.53 0.00 2.29
170 174 7.042254 GCACTCATCAAGCAAAAGATTCTTTTT 60.042 33.333 19.34 6.05 0.00 1.94
171 175 6.423001 GCACTCATCAAGCAAAAGATTCTTTT 59.577 34.615 16.82 16.82 0.00 2.27
172 176 5.924825 GCACTCATCAAGCAAAAGATTCTTT 59.075 36.000 5.82 5.82 0.00 2.52
173 177 5.010314 TGCACTCATCAAGCAAAAGATTCTT 59.990 36.000 0.00 0.00 34.97 2.52
174 178 4.521639 TGCACTCATCAAGCAAAAGATTCT 59.478 37.500 0.00 0.00 34.97 2.40
175 179 4.801891 TGCACTCATCAAGCAAAAGATTC 58.198 39.130 0.00 0.00 34.97 2.52
176 180 4.859304 TGCACTCATCAAGCAAAAGATT 57.141 36.364 0.00 0.00 34.97 2.40
177 181 5.884232 TCTATGCACTCATCAAGCAAAAGAT 59.116 36.000 0.00 0.00 42.15 2.40
178 182 5.247862 TCTATGCACTCATCAAGCAAAAGA 58.752 37.500 0.00 0.00 42.15 2.52
179 183 5.556355 TCTATGCACTCATCAAGCAAAAG 57.444 39.130 0.00 0.00 42.15 2.27
203 208 4.947388 CCTGTCTCCCCGAATTAATTGAAA 59.053 41.667 5.17 0.00 0.00 2.69
240 245 2.568509 TCCACTACCCCTAAAACCGAAG 59.431 50.000 0.00 0.00 0.00 3.79
241 246 2.618794 TCCACTACCCCTAAAACCGAA 58.381 47.619 0.00 0.00 0.00 4.30
242 247 2.323999 TCCACTACCCCTAAAACCGA 57.676 50.000 0.00 0.00 0.00 4.69
243 248 3.962718 TCTATCCACTACCCCTAAAACCG 59.037 47.826 0.00 0.00 0.00 4.44
244 249 6.786461 ACTATCTATCCACTACCCCTAAAACC 59.214 42.308 0.00 0.00 0.00 3.27
245 250 7.852550 ACTATCTATCCACTACCCCTAAAAC 57.147 40.000 0.00 0.00 0.00 2.43
246 251 8.740512 AGTACTATCTATCCACTACCCCTAAAA 58.259 37.037 0.00 0.00 0.00 1.52
247 252 8.298172 AGTACTATCTATCCACTACCCCTAAA 57.702 38.462 0.00 0.00 0.00 1.85
248 253 7.901804 AGTACTATCTATCCACTACCCCTAA 57.098 40.000 0.00 0.00 0.00 2.69
249 254 7.037008 GGAAGTACTATCTATCCACTACCCCTA 60.037 44.444 5.78 0.00 0.00 3.53
250 255 6.240527 GGAAGTACTATCTATCCACTACCCCT 60.241 46.154 5.78 0.00 0.00 4.79
251 256 5.951148 GGAAGTACTATCTATCCACTACCCC 59.049 48.000 5.78 0.00 0.00 4.95
252 257 6.792424 AGGAAGTACTATCTATCCACTACCC 58.208 44.000 12.10 0.00 32.47 3.69
253 258 6.885918 GGAGGAAGTACTATCTATCCACTACC 59.114 46.154 12.10 6.76 32.47 3.18
254 259 6.594937 CGGAGGAAGTACTATCTATCCACTAC 59.405 46.154 12.10 2.44 32.47 2.73
255 260 6.499699 TCGGAGGAAGTACTATCTATCCACTA 59.500 42.308 12.10 0.00 32.47 2.74
256 261 5.310068 TCGGAGGAAGTACTATCTATCCACT 59.690 44.000 12.10 0.00 32.47 4.00
257 262 5.558818 TCGGAGGAAGTACTATCTATCCAC 58.441 45.833 12.10 6.42 32.47 4.02
258 263 5.837770 TCGGAGGAAGTACTATCTATCCA 57.162 43.478 12.10 6.00 32.47 3.41
259 264 6.885376 TGAATCGGAGGAAGTACTATCTATCC 59.115 42.308 0.00 0.00 0.00 2.59
260 265 7.925043 TGAATCGGAGGAAGTACTATCTATC 57.075 40.000 0.00 0.00 0.00 2.08
262 267 9.976776 AATATGAATCGGAGGAAGTACTATCTA 57.023 33.333 0.00 0.00 0.00 1.98
263 268 8.887264 AATATGAATCGGAGGAAGTACTATCT 57.113 34.615 0.00 0.00 0.00 1.98
267 272 9.712305 CAATTAATATGAATCGGAGGAAGTACT 57.288 33.333 0.00 0.00 0.00 2.73
268 273 9.490379 ACAATTAATATGAATCGGAGGAAGTAC 57.510 33.333 0.00 0.00 0.00 2.73
269 274 9.706691 GACAATTAATATGAATCGGAGGAAGTA 57.293 33.333 0.00 0.00 0.00 2.24
270 275 7.385205 CGACAATTAATATGAATCGGAGGAAGT 59.615 37.037 0.00 0.00 0.00 3.01
271 276 7.385205 ACGACAATTAATATGAATCGGAGGAAG 59.615 37.037 0.00 0.00 0.00 3.46
272 277 7.214381 ACGACAATTAATATGAATCGGAGGAA 58.786 34.615 0.00 0.00 0.00 3.36
273 278 6.755206 ACGACAATTAATATGAATCGGAGGA 58.245 36.000 0.00 0.00 0.00 3.71
274 279 7.813148 ACTACGACAATTAATATGAATCGGAGG 59.187 37.037 16.73 8.02 33.81 4.30
275 280 8.744008 ACTACGACAATTAATATGAATCGGAG 57.256 34.615 13.31 13.31 35.42 4.63
276 281 9.537192 AAACTACGACAATTAATATGAATCGGA 57.463 29.630 0.00 3.14 0.00 4.55
290 295 9.971922 AGTTGTACTTACTAAAACTACGACAAT 57.028 29.630 0.00 0.00 29.56 2.71
307 312 9.426837 CGCTCTATCTATCTACTAGTTGTACTT 57.573 37.037 0.00 0.00 0.00 2.24
308 313 8.805175 TCGCTCTATCTATCTACTAGTTGTACT 58.195 37.037 0.00 0.00 0.00 2.73
309 314 8.984891 TCGCTCTATCTATCTACTAGTTGTAC 57.015 38.462 0.00 0.00 0.00 2.90
311 316 9.158233 GATTCGCTCTATCTATCTACTAGTTGT 57.842 37.037 0.00 0.00 0.00 3.32
312 317 9.157104 TGATTCGCTCTATCTATCTACTAGTTG 57.843 37.037 0.00 0.00 0.00 3.16
313 318 9.727859 TTGATTCGCTCTATCTATCTACTAGTT 57.272 33.333 0.00 0.00 0.00 2.24
314 319 9.378551 CTTGATTCGCTCTATCTATCTACTAGT 57.621 37.037 0.00 0.00 0.00 2.57
315 320 9.378551 ACTTGATTCGCTCTATCTATCTACTAG 57.621 37.037 0.00 0.00 0.00 2.57
316 321 9.727859 AACTTGATTCGCTCTATCTATCTACTA 57.272 33.333 0.00 0.00 0.00 1.82
317 322 8.511321 CAACTTGATTCGCTCTATCTATCTACT 58.489 37.037 0.00 0.00 0.00 2.57
318 323 8.293867 ACAACTTGATTCGCTCTATCTATCTAC 58.706 37.037 0.00 0.00 0.00 2.59
319 324 8.293157 CACAACTTGATTCGCTCTATCTATCTA 58.707 37.037 0.00 0.00 0.00 1.98
320 325 7.144661 CACAACTTGATTCGCTCTATCTATCT 58.855 38.462 0.00 0.00 0.00 1.98
321 326 6.364706 CCACAACTTGATTCGCTCTATCTATC 59.635 42.308 0.00 0.00 0.00 2.08
322 327 6.183360 ACCACAACTTGATTCGCTCTATCTAT 60.183 38.462 0.00 0.00 0.00 1.98
323 328 5.127194 ACCACAACTTGATTCGCTCTATCTA 59.873 40.000 0.00 0.00 0.00 1.98
324 329 4.081420 ACCACAACTTGATTCGCTCTATCT 60.081 41.667 0.00 0.00 0.00 1.98
325 330 4.184629 ACCACAACTTGATTCGCTCTATC 58.815 43.478 0.00 0.00 0.00 2.08
326 331 4.207891 ACCACAACTTGATTCGCTCTAT 57.792 40.909 0.00 0.00 0.00 1.98
327 332 3.678056 ACCACAACTTGATTCGCTCTA 57.322 42.857 0.00 0.00 0.00 2.43
328 333 2.549754 CAACCACAACTTGATTCGCTCT 59.450 45.455 0.00 0.00 0.00 4.09
329 334 2.350772 CCAACCACAACTTGATTCGCTC 60.351 50.000 0.00 0.00 0.00 5.03
330 335 1.608590 CCAACCACAACTTGATTCGCT 59.391 47.619 0.00 0.00 0.00 4.93
331 336 1.606668 TCCAACCACAACTTGATTCGC 59.393 47.619 0.00 0.00 0.00 4.70
332 337 3.366273 CCATCCAACCACAACTTGATTCG 60.366 47.826 0.00 0.00 0.00 3.34
333 338 3.573967 ACCATCCAACCACAACTTGATTC 59.426 43.478 0.00 0.00 0.00 2.52
334 339 3.575805 ACCATCCAACCACAACTTGATT 58.424 40.909 0.00 0.00 0.00 2.57
335 340 3.243359 ACCATCCAACCACAACTTGAT 57.757 42.857 0.00 0.00 0.00 2.57
336 341 2.746279 ACCATCCAACCACAACTTGA 57.254 45.000 0.00 0.00 0.00 3.02
337 342 4.141287 TCTAACCATCCAACCACAACTTG 58.859 43.478 0.00 0.00 0.00 3.16
338 343 4.104102 TCTCTAACCATCCAACCACAACTT 59.896 41.667 0.00 0.00 0.00 2.66
339 344 3.650942 TCTCTAACCATCCAACCACAACT 59.349 43.478 0.00 0.00 0.00 3.16
340 345 4.003648 CTCTCTAACCATCCAACCACAAC 58.996 47.826 0.00 0.00 0.00 3.32
341 346 3.907474 TCTCTCTAACCATCCAACCACAA 59.093 43.478 0.00 0.00 0.00 3.33
342 347 3.260884 GTCTCTCTAACCATCCAACCACA 59.739 47.826 0.00 0.00 0.00 4.17
343 348 3.515901 AGTCTCTCTAACCATCCAACCAC 59.484 47.826 0.00 0.00 0.00 4.16
344 349 3.515502 CAGTCTCTCTAACCATCCAACCA 59.484 47.826 0.00 0.00 0.00 3.67
345 350 3.515901 ACAGTCTCTCTAACCATCCAACC 59.484 47.826 0.00 0.00 0.00 3.77
346 351 4.499183 CACAGTCTCTCTAACCATCCAAC 58.501 47.826 0.00 0.00 0.00 3.77
347 352 3.515502 CCACAGTCTCTCTAACCATCCAA 59.484 47.826 0.00 0.00 0.00 3.53
348 353 3.099905 CCACAGTCTCTCTAACCATCCA 58.900 50.000 0.00 0.00 0.00 3.41
349 354 3.100671 ACCACAGTCTCTCTAACCATCC 58.899 50.000 0.00 0.00 0.00 3.51
350 355 5.010213 GGATACCACAGTCTCTCTAACCATC 59.990 48.000 0.00 0.00 0.00 3.51
351 356 4.896482 GGATACCACAGTCTCTCTAACCAT 59.104 45.833 0.00 0.00 0.00 3.55
352 357 4.279145 GGATACCACAGTCTCTCTAACCA 58.721 47.826 0.00 0.00 0.00 3.67
353 358 4.922471 GGATACCACAGTCTCTCTAACC 57.078 50.000 0.00 0.00 0.00 2.85
369 374 3.117663 TGAACCTTAATGGGCTGGGATAC 60.118 47.826 0.00 0.00 41.11 2.24
370 375 3.127250 TGAACCTTAATGGGCTGGGATA 58.873 45.455 0.00 0.00 41.11 2.59
371 376 1.929494 TGAACCTTAATGGGCTGGGAT 59.071 47.619 0.00 0.00 41.11 3.85
372 377 1.377690 TGAACCTTAATGGGCTGGGA 58.622 50.000 0.00 0.00 41.11 4.37
373 378 2.230130 TTGAACCTTAATGGGCTGGG 57.770 50.000 0.00 0.00 41.11 4.45
374 379 3.132824 GGATTTGAACCTTAATGGGCTGG 59.867 47.826 0.00 0.00 41.11 4.85
375 380 4.026052 AGGATTTGAACCTTAATGGGCTG 58.974 43.478 0.00 0.00 41.11 4.85
376 381 4.026052 CAGGATTTGAACCTTAATGGGCT 58.974 43.478 0.00 0.00 41.11 5.19
377 382 3.132824 CCAGGATTTGAACCTTAATGGGC 59.867 47.826 0.00 0.00 41.11 5.36
378 383 4.160252 CACCAGGATTTGAACCTTAATGGG 59.840 45.833 0.00 0.00 41.11 4.00
379 384 4.381932 GCACCAGGATTTGAACCTTAATGG 60.382 45.833 0.00 0.00 42.93 3.16
380 385 4.463891 AGCACCAGGATTTGAACCTTAATG 59.536 41.667 0.00 0.00 35.35 1.90
381 386 4.677182 AGCACCAGGATTTGAACCTTAAT 58.323 39.130 0.00 0.00 35.35 1.40
382 387 4.079253 GAGCACCAGGATTTGAACCTTAA 58.921 43.478 0.00 0.00 35.35 1.85
383 388 3.686016 GAGCACCAGGATTTGAACCTTA 58.314 45.455 0.00 0.00 35.35 2.69
384 389 2.519013 GAGCACCAGGATTTGAACCTT 58.481 47.619 0.00 0.00 35.35 3.50
385 390 1.611673 CGAGCACCAGGATTTGAACCT 60.612 52.381 0.00 0.00 38.40 3.50
386 391 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
387 392 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
388 393 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
389 394 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
390 395 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
391 396 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
392 397 1.549203 AAAATGCGAGCACCAGGATT 58.451 45.000 0.00 0.00 0.00 3.01
393 398 2.418368 TAAAATGCGAGCACCAGGAT 57.582 45.000 0.00 0.00 0.00 3.24
394 399 2.083774 CTTAAAATGCGAGCACCAGGA 58.916 47.619 0.00 0.00 0.00 3.86
395 400 2.083774 TCTTAAAATGCGAGCACCAGG 58.916 47.619 0.00 0.00 0.00 4.45
396 401 3.374988 TCATCTTAAAATGCGAGCACCAG 59.625 43.478 0.00 0.00 0.00 4.00
397 402 3.342719 TCATCTTAAAATGCGAGCACCA 58.657 40.909 0.00 0.00 0.00 4.17
398 403 4.558538 ATCATCTTAAAATGCGAGCACC 57.441 40.909 0.00 0.00 0.00 5.01
399 404 6.662616 ACATATCATCTTAAAATGCGAGCAC 58.337 36.000 0.00 0.00 0.00 4.40
400 405 6.866010 ACATATCATCTTAAAATGCGAGCA 57.134 33.333 0.00 0.00 0.00 4.26
401 406 6.580041 CCAACATATCATCTTAAAATGCGAGC 59.420 38.462 0.00 0.00 0.00 5.03
402 407 6.580041 GCCAACATATCATCTTAAAATGCGAG 59.420 38.462 0.00 0.00 0.00 5.03
403 408 6.262944 AGCCAACATATCATCTTAAAATGCGA 59.737 34.615 0.00 0.00 0.00 5.10
404 409 6.441274 AGCCAACATATCATCTTAAAATGCG 58.559 36.000 0.00 0.00 0.00 4.73
405 410 6.580041 CGAGCCAACATATCATCTTAAAATGC 59.420 38.462 0.00 0.00 0.00 3.56
406 411 7.080099 CCGAGCCAACATATCATCTTAAAATG 58.920 38.462 0.00 0.00 0.00 2.32
407 412 6.772716 ACCGAGCCAACATATCATCTTAAAAT 59.227 34.615 0.00 0.00 0.00 1.82
408 413 6.038161 CACCGAGCCAACATATCATCTTAAAA 59.962 38.462 0.00 0.00 0.00 1.52
409 414 5.527214 CACCGAGCCAACATATCATCTTAAA 59.473 40.000 0.00 0.00 0.00 1.52
410 415 5.056480 CACCGAGCCAACATATCATCTTAA 58.944 41.667 0.00 0.00 0.00 1.85
411 416 4.100963 ACACCGAGCCAACATATCATCTTA 59.899 41.667 0.00 0.00 0.00 2.10
412 417 3.118261 ACACCGAGCCAACATATCATCTT 60.118 43.478 0.00 0.00 0.00 2.40
413 418 2.435805 ACACCGAGCCAACATATCATCT 59.564 45.455 0.00 0.00 0.00 2.90
414 419 2.838736 ACACCGAGCCAACATATCATC 58.161 47.619 0.00 0.00 0.00 2.92
415 420 3.281727 AACACCGAGCCAACATATCAT 57.718 42.857 0.00 0.00 0.00 2.45
416 421 2.779755 AACACCGAGCCAACATATCA 57.220 45.000 0.00 0.00 0.00 2.15
417 422 3.438781 TCAAAACACCGAGCCAACATATC 59.561 43.478 0.00 0.00 0.00 1.63
418 423 3.417101 TCAAAACACCGAGCCAACATAT 58.583 40.909 0.00 0.00 0.00 1.78
419 424 2.852449 TCAAAACACCGAGCCAACATA 58.148 42.857 0.00 0.00 0.00 2.29
420 425 1.686355 TCAAAACACCGAGCCAACAT 58.314 45.000 0.00 0.00 0.00 2.71
421 426 1.403679 CTTCAAAACACCGAGCCAACA 59.596 47.619 0.00 0.00 0.00 3.33
422 427 1.269051 CCTTCAAAACACCGAGCCAAC 60.269 52.381 0.00 0.00 0.00 3.77
423 428 1.028905 CCTTCAAAACACCGAGCCAA 58.971 50.000 0.00 0.00 0.00 4.52
424 429 0.181587 TCCTTCAAAACACCGAGCCA 59.818 50.000 0.00 0.00 0.00 4.75
425 430 0.875059 CTCCTTCAAAACACCGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
426 431 0.238553 GCTCCTTCAAAACACCGAGC 59.761 55.000 0.00 0.00 36.33 5.03
427 432 1.801178 GAGCTCCTTCAAAACACCGAG 59.199 52.381 0.87 0.00 0.00 4.63
428 433 1.140052 TGAGCTCCTTCAAAACACCGA 59.860 47.619 12.15 0.00 0.00 4.69
429 434 1.593196 TGAGCTCCTTCAAAACACCG 58.407 50.000 12.15 0.00 0.00 4.94
430 435 3.691609 CCTATGAGCTCCTTCAAAACACC 59.308 47.826 12.15 0.00 0.00 4.16
431 436 3.691609 CCCTATGAGCTCCTTCAAAACAC 59.308 47.826 12.15 0.00 0.00 3.32
432 437 3.587061 TCCCTATGAGCTCCTTCAAAACA 59.413 43.478 12.15 0.00 0.00 2.83
433 438 4.222124 TCCCTATGAGCTCCTTCAAAAC 57.778 45.455 12.15 0.00 0.00 2.43
434 439 5.905331 TCTATCCCTATGAGCTCCTTCAAAA 59.095 40.000 12.15 0.00 0.00 2.44
435 440 5.467738 TCTATCCCTATGAGCTCCTTCAAA 58.532 41.667 12.15 0.00 0.00 2.69
436 441 5.079998 TCTATCCCTATGAGCTCCTTCAA 57.920 43.478 12.15 0.00 0.00 2.69
437 442 4.107149 ACTCTATCCCTATGAGCTCCTTCA 59.893 45.833 12.15 0.00 0.00 3.02
438 443 4.462483 CACTCTATCCCTATGAGCTCCTTC 59.538 50.000 12.15 0.00 0.00 3.46
439 444 4.140805 ACACTCTATCCCTATGAGCTCCTT 60.141 45.833 12.15 0.92 0.00 3.36
440 445 3.401002 ACACTCTATCCCTATGAGCTCCT 59.599 47.826 12.15 3.56 0.00 3.69
441 446 3.509575 CACACTCTATCCCTATGAGCTCC 59.490 52.174 12.15 0.00 0.00 4.70
442 447 3.056891 GCACACTCTATCCCTATGAGCTC 60.057 52.174 6.82 6.82 0.00 4.09
443 448 2.896685 GCACACTCTATCCCTATGAGCT 59.103 50.000 0.00 0.00 0.00 4.09
444 449 2.352225 CGCACACTCTATCCCTATGAGC 60.352 54.545 0.00 0.00 0.00 4.26
445 450 2.352225 GCGCACACTCTATCCCTATGAG 60.352 54.545 0.30 0.00 0.00 2.90
446 451 1.613925 GCGCACACTCTATCCCTATGA 59.386 52.381 0.30 0.00 0.00 2.15
447 452 1.341209 TGCGCACACTCTATCCCTATG 59.659 52.381 5.66 0.00 0.00 2.23
448 453 1.704641 TGCGCACACTCTATCCCTAT 58.295 50.000 5.66 0.00 0.00 2.57
449 454 1.341209 CATGCGCACACTCTATCCCTA 59.659 52.381 14.90 0.00 0.00 3.53
450 455 0.105593 CATGCGCACACTCTATCCCT 59.894 55.000 14.90 0.00 0.00 4.20
451 456 0.179073 ACATGCGCACACTCTATCCC 60.179 55.000 14.90 0.00 0.00 3.85
452 457 0.933097 CACATGCGCACACTCTATCC 59.067 55.000 14.90 0.00 0.00 2.59
453 458 0.302890 GCACATGCGCACACTCTATC 59.697 55.000 14.90 0.00 0.00 2.08
454 459 0.391528 TGCACATGCGCACACTCTAT 60.392 50.000 14.90 0.00 45.83 1.98
455 460 0.391528 ATGCACATGCGCACACTCTA 60.392 50.000 14.90 0.00 46.56 2.43
456 461 1.239296 AATGCACATGCGCACACTCT 61.239 50.000 14.90 0.00 46.56 3.24
457 462 0.795735 GAATGCACATGCGCACACTC 60.796 55.000 14.90 0.84 46.56 3.51
458 463 1.210931 GAATGCACATGCGCACACT 59.789 52.632 14.90 0.00 46.56 3.55
459 464 0.457166 ATGAATGCACATGCGCACAC 60.457 50.000 14.90 8.60 46.56 3.82
460 465 1.064357 CTATGAATGCACATGCGCACA 59.936 47.619 14.90 6.55 46.56 4.57
461 466 1.331447 TCTATGAATGCACATGCGCAC 59.669 47.619 14.90 0.00 46.56 5.34
463 468 1.069432 CCTCTATGAATGCACATGCGC 60.069 52.381 0.00 0.00 45.83 6.09
464 469 2.032290 CACCTCTATGAATGCACATGCG 60.032 50.000 0.00 0.00 45.83 4.73
465 470 3.208594 TCACCTCTATGAATGCACATGC 58.791 45.455 0.00 0.00 42.50 4.06
466 471 4.272748 CACTCACCTCTATGAATGCACATG 59.727 45.833 0.00 0.00 0.00 3.21
467 472 4.080695 ACACTCACCTCTATGAATGCACAT 60.081 41.667 0.00 0.00 28.78 3.21
468 473 3.261643 ACACTCACCTCTATGAATGCACA 59.738 43.478 0.00 0.00 28.78 4.57
469 474 3.866651 ACACTCACCTCTATGAATGCAC 58.133 45.455 0.00 0.00 28.78 4.57
470 475 5.604565 CATACACTCACCTCTATGAATGCA 58.395 41.667 0.00 0.00 28.78 3.96
471 476 4.450419 GCATACACTCACCTCTATGAATGC 59.550 45.833 0.00 0.00 34.00 3.56
472 477 4.683320 CGCATACACTCACCTCTATGAATG 59.317 45.833 0.00 0.00 32.12 2.67
473 478 4.797604 GCGCATACACTCACCTCTATGAAT 60.798 45.833 0.30 0.00 0.00 2.57
474 479 3.490933 GCGCATACACTCACCTCTATGAA 60.491 47.826 0.30 0.00 0.00 2.57
475 480 2.034685 GCGCATACACTCACCTCTATGA 59.965 50.000 0.30 0.00 0.00 2.15
476 481 2.398498 GCGCATACACTCACCTCTATG 58.602 52.381 0.30 0.00 0.00 2.23
477 482 1.001268 CGCGCATACACTCACCTCTAT 60.001 52.381 8.75 0.00 0.00 1.98
478 483 0.380733 CGCGCATACACTCACCTCTA 59.619 55.000 8.75 0.00 0.00 2.43
479 484 1.139734 CGCGCATACACTCACCTCT 59.860 57.895 8.75 0.00 0.00 3.69
480 485 1.153823 ACGCGCATACACTCACCTC 60.154 57.895 5.73 0.00 0.00 3.85
481 486 1.446099 CACGCGCATACACTCACCT 60.446 57.895 5.73 0.00 0.00 4.00
482 487 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
483 488 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
484 489 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
485 490 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
486 491 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
487 492 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
488 493 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
489 494 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
490 495 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
491 496 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
492 497 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
496 501 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
497 502 4.142902 ACAAACACAAGCGCTCATATACAC 60.143 41.667 12.06 0.00 0.00 2.90
498 503 4.000325 ACAAACACAAGCGCTCATATACA 59.000 39.130 12.06 0.00 0.00 2.29
499 504 4.600012 ACAAACACAAGCGCTCATATAC 57.400 40.909 12.06 0.00 0.00 1.47
500 505 5.290885 CAGTACAAACACAAGCGCTCATATA 59.709 40.000 12.06 0.00 0.00 0.86
501 506 4.093408 CAGTACAAACACAAGCGCTCATAT 59.907 41.667 12.06 0.00 0.00 1.78
502 507 3.431912 CAGTACAAACACAAGCGCTCATA 59.568 43.478 12.06 0.00 0.00 2.15
503 508 2.224079 CAGTACAAACACAAGCGCTCAT 59.776 45.455 12.06 0.00 0.00 2.90
504 509 1.597195 CAGTACAAACACAAGCGCTCA 59.403 47.619 12.06 0.00 0.00 4.26
505 510 1.864711 TCAGTACAAACACAAGCGCTC 59.135 47.619 12.06 0.00 0.00 5.03
506 511 1.948104 TCAGTACAAACACAAGCGCT 58.052 45.000 2.64 2.64 0.00 5.92
507 512 2.032030 ACATCAGTACAAACACAAGCGC 60.032 45.455 0.00 0.00 0.00 5.92
508 513 3.878086 ACATCAGTACAAACACAAGCG 57.122 42.857 0.00 0.00 0.00 4.68
509 514 7.979115 TTTTAACATCAGTACAAACACAAGC 57.021 32.000 0.00 0.00 0.00 4.01
551 556 7.201453 CGGTCGAATTAACCAGTTTTTGTTTTT 60.201 33.333 9.51 0.00 36.53 1.94
555 560 4.575645 TCGGTCGAATTAACCAGTTTTTGT 59.424 37.500 9.51 0.00 36.53 2.83
556 561 5.098218 TCGGTCGAATTAACCAGTTTTTG 57.902 39.130 9.51 0.00 36.53 2.44
709 721 1.177256 AACGGACGCTGTCAGGTACT 61.177 55.000 1.14 0.00 43.88 2.73
710 722 0.731855 GAACGGACGCTGTCAGGTAC 60.732 60.000 1.14 0.00 33.68 3.34
711 723 1.174078 TGAACGGACGCTGTCAGGTA 61.174 55.000 1.14 0.00 33.68 3.08
712 724 2.338984 GAACGGACGCTGTCAGGT 59.661 61.111 1.14 6.47 33.68 4.00
749 761 1.152989 CGGTGACCGGTTCGTTTTCA 61.153 55.000 17.80 0.00 44.15 2.69
962 983 3.201297 CGCAGCCACACACACACA 61.201 61.111 0.00 0.00 0.00 3.72
963 984 3.952675 CCGCAGCCACACACACAC 61.953 66.667 0.00 0.00 0.00 3.82
991 1012 4.547367 GTTCCCCATCCTCGCCCG 62.547 72.222 0.00 0.00 0.00 6.13
993 1014 2.190578 CAGTTCCCCATCCTCGCC 59.809 66.667 0.00 0.00 0.00 5.54
1250 1271 2.417516 CGGTGATGAGGCGGTAGG 59.582 66.667 0.00 0.00 0.00 3.18
1292 1313 0.892063 AAGAGGCAGAGGACGAGAAC 59.108 55.000 0.00 0.00 0.00 3.01
1654 1750 1.918609 CGCGAGGAACAACTAACTAGC 59.081 52.381 0.00 0.00 0.00 3.42
1704 1803 2.899900 AGCTGATGACCTACAGTGTTGA 59.100 45.455 0.00 0.00 36.62 3.18
1719 1819 5.543507 ATTCATCTTCTCGGTAAGCTGAT 57.456 39.130 0.00 0.00 33.11 2.90
1745 1846 6.966534 AAATCTAATGGCAATTACCCAGAG 57.033 37.500 0.00 3.91 35.48 3.35
1756 1857 1.202245 GCCGCGAAAAATCTAATGGCA 60.202 47.619 8.23 0.00 40.88 4.92
1766 1867 4.814900 TTTTGCAGCCGCGAAAAA 57.185 44.444 8.23 3.64 46.35 1.94
1789 1890 7.979537 GGTTAACCAGATTTCTGTGAAAACTTT 59.020 33.333 20.12 0.00 42.27 2.66
1790 1891 7.342026 AGGTTAACCAGATTTCTGTGAAAACTT 59.658 33.333 26.26 0.00 42.27 2.66
1796 1897 6.430000 GCTAAAGGTTAACCAGATTTCTGTGA 59.570 38.462 26.26 2.88 42.27 3.58
1797 1898 6.431234 AGCTAAAGGTTAACCAGATTTCTGTG 59.569 38.462 26.26 10.19 42.27 3.66
1798 1899 6.543735 AGCTAAAGGTTAACCAGATTTCTGT 58.456 36.000 26.26 1.60 42.27 3.41
1815 1916 6.405538 ACTGATTCTCTCCTTTGAGCTAAAG 58.594 40.000 0.00 0.00 44.35 1.85
1826 1927 4.468153 GGTACTCCAAACTGATTCTCTCCT 59.532 45.833 0.00 0.00 0.00 3.69
1882 1983 5.794945 CACACCTACAATCTTGTTTTATGCG 59.205 40.000 0.20 0.00 42.35 4.73
1896 1997 0.762418 CCACAGGACCACACCTACAA 59.238 55.000 0.00 0.00 38.32 2.41
1897 1998 0.105401 TCCACAGGACCACACCTACA 60.105 55.000 0.00 0.00 38.32 2.74
1898 1999 1.207329 GATCCACAGGACCACACCTAC 59.793 57.143 0.00 0.00 38.32 3.18
1899 2000 1.568504 GATCCACAGGACCACACCTA 58.431 55.000 0.00 0.00 38.32 3.08
1900 2001 1.201429 GGATCCACAGGACCACACCT 61.201 60.000 6.95 0.00 41.43 4.00
1901 2002 1.299976 GGATCCACAGGACCACACC 59.700 63.158 6.95 0.00 32.98 4.16
1902 2003 0.400213 TTGGATCCACAGGACCACAC 59.600 55.000 15.91 0.00 34.43 3.82
2023 2124 0.524392 CACTAGCCGCGACTCTTCAG 60.524 60.000 8.23 0.00 0.00 3.02
2035 2136 1.002134 TTTGCTCCTGCCACTAGCC 60.002 57.895 0.00 0.00 42.71 3.93
2036 2137 0.036010 TCTTTGCTCCTGCCACTAGC 60.036 55.000 0.00 0.00 44.14 3.42
2043 2144 1.396301 CAGACGATTCTTTGCTCCTGC 59.604 52.381 0.00 0.00 40.20 4.85
2075 2176 1.433534 GTTCAGAACGGGAGCAGAAG 58.566 55.000 0.00 0.00 0.00 2.85
2076 2177 0.034896 GGTTCAGAACGGGAGCAGAA 59.965 55.000 7.22 0.00 0.00 3.02
2118 2219 4.590918 TCAGGTGTAGAGTAGTCAGAAGG 58.409 47.826 0.00 0.00 0.00 3.46
2126 2227 4.727507 ACTGCAATCAGGTGTAGAGTAG 57.272 45.455 0.00 0.00 44.54 2.57
2155 2258 3.827898 CCGTCTCCTCCGTCCTGC 61.828 72.222 0.00 0.00 0.00 4.85
2507 2639 6.856938 GGATGTAGTATTAGCTACTCGTGTTG 59.143 42.308 0.00 0.00 41.10 3.33
2608 2746 0.798776 CACAGAGAAACGCCATCACC 59.201 55.000 0.00 0.00 0.00 4.02
2707 2846 2.556840 ATTCCATCCCACCACCTGCG 62.557 60.000 0.00 0.00 0.00 5.18
2804 2968 0.108329 AGGTATCGTGGGCGTCAAAG 60.108 55.000 0.00 0.00 39.49 2.77
2836 3000 2.356194 GCCAAAGCGCCAAACAGG 60.356 61.111 2.29 0.00 41.84 4.00
2925 3119 4.235079 ACAGCTTGGCCATTAATCTACA 57.765 40.909 6.09 0.00 0.00 2.74
2965 3159 2.038659 CAACTGTCCCCAATTGTGGTT 58.961 47.619 6.86 0.00 44.30 3.67
2982 3183 2.223433 GCTGATGCTGCCAGTATTCAAC 60.223 50.000 0.00 0.00 36.03 3.18
3116 3317 1.369091 CCAAGCTGCCACATACGGTC 61.369 60.000 0.00 0.00 0.00 4.79
3138 3339 0.611618 TTGATGGACAAAGCGGCCAT 60.612 50.000 2.24 0.00 44.70 4.40
3173 3385 5.221362 CCCAAAGCATATGATCATCTTGCAA 60.221 40.000 30.22 10.26 34.44 4.08
3174 3386 4.279922 CCCAAAGCATATGATCATCTTGCA 59.720 41.667 30.22 10.87 34.44 4.08
3176 3388 5.074804 TCCCCAAAGCATATGATCATCTTG 58.925 41.667 12.53 12.31 0.00 3.02
3177 3389 5.329191 TCCCCAAAGCATATGATCATCTT 57.671 39.130 12.53 6.89 0.00 2.40
3178 3390 5.507637 GATCCCCAAAGCATATGATCATCT 58.492 41.667 12.53 0.00 31.27 2.90
3179 3391 4.334759 CGATCCCCAAAGCATATGATCATC 59.665 45.833 12.53 0.00 31.27 2.92
3180 3392 4.019051 TCGATCCCCAAAGCATATGATCAT 60.019 41.667 13.81 13.81 31.27 2.45
3197 3409 2.202987 CCAGCCTGCAGTCGATCC 60.203 66.667 13.81 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.