Multiple sequence alignment - TraesCS6A01G299900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G299900 chr6A 100.000 2162 0 0 1 2162 532879569 532877408 0.000000e+00 3993.0
1 TraesCS6A01G299900 chr6A 86.667 105 4 5 1615 1719 532847938 532847844 8.160000e-20 108.0
2 TraesCS6A01G299900 chr6D 85.784 1027 58 42 433 1394 387735108 387734105 0.000000e+00 1007.0
3 TraesCS6A01G299900 chr6D 84.334 683 50 27 1386 2048 387734062 387733417 1.100000e-172 616.0
4 TraesCS6A01G299900 chr6D 82.840 169 14 5 1552 1719 387725199 387725045 1.040000e-28 137.0
5 TraesCS6A01G299900 chr6D 88.235 68 3 2 2100 2162 45814200 45814267 2.300000e-10 76.8
6 TraesCS6A01G299900 chr6B 81.764 998 69 62 489 1395 578773419 578772444 0.000000e+00 730.0
7 TraesCS6A01G299900 chr6B 84.934 604 40 17 1390 1975 578772410 578771840 4.030000e-157 564.0
8 TraesCS6A01G299900 chr6B 85.479 303 33 3 9 301 578777129 578776828 2.700000e-79 305.0
9 TraesCS6A01G299900 chr6B 80.473 169 17 5 1552 1719 578694681 578694528 4.880000e-22 115.0
10 TraesCS6A01G299900 chr7B 86.207 87 7 2 2081 2162 135031044 135031130 2.960000e-14 89.8
11 TraesCS6A01G299900 chr7B 85.000 80 7 2 2088 2162 750140574 750140653 2.300000e-10 76.8
12 TraesCS6A01G299900 chr7B 84.416 77 7 3 2090 2161 411776260 411776184 1.070000e-08 71.3
13 TraesCS6A01G299900 chr3A 85.366 82 7 3 2086 2162 729230501 729230582 1.780000e-11 80.5
14 TraesCS6A01G299900 chr7D 85.897 78 6 2 2090 2162 402322274 402322197 6.400000e-11 78.7
15 TraesCS6A01G299900 chr7D 83.333 78 8 2 2090 2162 184907334 184907257 1.380000e-07 67.6
16 TraesCS6A01G299900 chr1D 85.366 82 5 5 2087 2162 67987532 67987612 6.400000e-11 78.7
17 TraesCS6A01G299900 chr7A 100.000 36 0 0 2127 2162 679525066 679525031 1.380000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G299900 chr6A 532877408 532879569 2161 True 3993.0 3993 100.000 1 2162 1 chr6A.!!$R2 2161
1 TraesCS6A01G299900 chr6D 387733417 387735108 1691 True 811.5 1007 85.059 433 2048 2 chr6D.!!$R2 1615
2 TraesCS6A01G299900 chr6B 578771840 578777129 5289 True 533.0 730 84.059 9 1975 3 chr6B.!!$R2 1966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 4236 0.745845 CCATTCGAGCCTCCAAGTGG 60.746 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 5527 0.40067 GGGGAGGGGAGATACTTGCT 60.401 60.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.710375 TGTTTAGCTCCTTAGAGATCCGTT 59.290 41.667 0.00 0.00 43.39 4.44
85 86 6.483640 CCTCTTGATTGTAACCCTATAGCAAC 59.516 42.308 0.00 0.00 0.00 4.17
94 95 7.511268 TGTAACCCTATAGCAACGGAATAAAT 58.489 34.615 0.00 0.00 0.00 1.40
136 146 5.313712 AGAATTGTCGAGGTTTACCATGTT 58.686 37.500 1.13 0.00 38.89 2.71
138 148 2.679450 TGTCGAGGTTTACCATGTTCG 58.321 47.619 1.13 2.11 38.89 3.95
145 155 5.406175 CGAGGTTTACCATGTTCGTTTCTTA 59.594 40.000 1.13 0.00 38.89 2.10
153 163 2.078392 TGTTCGTTTCTTATTCCGCCC 58.922 47.619 0.00 0.00 0.00 6.13
154 164 1.061566 GTTCGTTTCTTATTCCGCCCG 59.938 52.381 0.00 0.00 0.00 6.13
172 182 3.243941 GCCCGAAAAAGGTTACCATGTTT 60.244 43.478 3.51 0.24 0.00 2.83
173 183 4.303282 CCCGAAAAAGGTTACCATGTTTG 58.697 43.478 3.51 0.00 0.00 2.93
178 188 5.351948 AAAAGGTTACCATGTTTGCTGTT 57.648 34.783 3.51 0.00 0.00 3.16
186 196 2.489329 CCATGTTTGCTGTTGAGGTAGG 59.511 50.000 0.00 0.00 0.00 3.18
187 197 1.604604 TGTTTGCTGTTGAGGTAGGC 58.395 50.000 0.00 0.00 0.00 3.93
219 229 9.958234 TGAATGATCTAACGTTTCAAATTTGAA 57.042 25.926 26.01 26.01 44.78 2.69
233 243 7.288810 TCAAATTTGAACTTTAGTGGCATCT 57.711 32.000 18.45 0.00 33.55 2.90
246 256 8.579850 TTTAGTGGCATCTTTTGATTCATAGT 57.420 30.769 0.00 0.00 36.97 2.12
252 262 9.060347 TGGCATCTTTTGATTCATAGTATTCTC 57.940 33.333 0.00 0.00 36.97 2.87
274 284 9.515020 TTCTCAAAACACATGACTATGAAAAAC 57.485 29.630 0.00 0.00 37.73 2.43
275 285 8.681806 TCTCAAAACACATGACTATGAAAAACA 58.318 29.630 0.00 0.00 37.73 2.83
276 286 9.467258 CTCAAAACACATGACTATGAAAAACAT 57.533 29.630 0.00 0.00 42.39 2.71
277 287 9.247126 TCAAAACACATGACTATGAAAAACATG 57.753 29.630 0.00 0.00 42.37 3.21
278 288 8.489559 CAAAACACATGACTATGAAAAACATGG 58.510 33.333 0.00 0.00 41.41 3.66
288 299 7.836842 ACTATGAAAAACATGGGATTGTAACC 58.163 34.615 0.00 0.00 40.93 2.85
291 302 5.835819 TGAAAAACATGGGATTGTAACCTCA 59.164 36.000 0.00 0.00 0.00 3.86
294 305 3.290710 ACATGGGATTGTAACCTCATGC 58.709 45.455 0.00 0.00 38.44 4.06
298 309 3.245586 TGGGATTGTAACCTCATGCCTTT 60.246 43.478 0.00 0.00 0.00 3.11
335 374 5.559427 ACAAAAATTTGGTTTGCTTGACC 57.441 34.783 10.38 0.00 42.34 4.02
340 379 1.610363 TTGGTTTGCTTGACCGCATA 58.390 45.000 0.00 0.00 40.04 3.14
446 544 9.388346 CATCTTTAGTACTAGTTGAGCTAATCG 57.612 37.037 0.00 1.62 0.00 3.34
457 555 3.596214 TGAGCTAATCGACTTTTCACCC 58.404 45.455 0.00 0.00 0.00 4.61
458 556 2.603560 GAGCTAATCGACTTTTCACCCG 59.396 50.000 0.00 0.00 0.00 5.28
459 557 2.028385 AGCTAATCGACTTTTCACCCGT 60.028 45.455 0.00 0.00 0.00 5.28
460 558 3.194116 AGCTAATCGACTTTTCACCCGTA 59.806 43.478 0.00 0.00 0.00 4.02
461 559 3.550678 GCTAATCGACTTTTCACCCGTAG 59.449 47.826 0.00 0.00 0.00 3.51
482 581 3.587061 AGGGTACAACAATCCATCACAGA 59.413 43.478 0.00 0.00 0.00 3.41
497 3742 6.211184 TCCATCACAGACCAAGCAAATTTAAT 59.789 34.615 0.00 0.00 0.00 1.40
721 4001 4.688966 GGATCCCGATGCGGCCTC 62.689 72.222 0.00 0.00 46.86 4.70
722 4002 4.688966 GATCCCGATGCGGCCTCC 62.689 72.222 0.00 0.00 46.86 4.30
728 4008 4.247380 GATGCGGCCTCCCTCCTG 62.247 72.222 0.00 0.00 0.00 3.86
782 4062 2.028930 ACGCCCACAACACAAAAGAAAA 60.029 40.909 0.00 0.00 0.00 2.29
786 4066 3.370672 CCCACAACACAAAAGAAAAGCAC 59.629 43.478 0.00 0.00 0.00 4.40
787 4067 3.060628 CCACAACACAAAAGAAAAGCACG 59.939 43.478 0.00 0.00 0.00 5.34
832 4112 3.395639 CCGCCGGTATAAATAAAGCTCA 58.604 45.455 1.90 0.00 0.00 4.26
833 4113 3.185797 CCGCCGGTATAAATAAAGCTCAC 59.814 47.826 1.90 0.00 0.00 3.51
912 4193 2.680352 GCTCCTCCTCCCGACACA 60.680 66.667 0.00 0.00 0.00 3.72
924 4205 3.036084 GACACAGCACGACCACCG 61.036 66.667 0.00 0.00 45.44 4.94
931 4212 2.509336 CACGACCACCGCATCCTC 60.509 66.667 0.00 0.00 43.32 3.71
955 4236 0.745845 CCATTCGAGCCTCCAAGTGG 60.746 60.000 0.00 0.00 0.00 4.00
1205 4538 2.237751 CGTCCTTAATCGGCAGCGG 61.238 63.158 0.00 0.00 0.00 5.52
1218 4574 2.364579 AGCGGGACCGGGTATTCA 60.365 61.111 13.21 0.00 40.19 2.57
1268 4627 6.003859 ACCAGTGTAGTAGTAGTAGCTCAT 57.996 41.667 0.00 0.00 0.00 2.90
1346 4714 6.146510 ACGTTCGATCTAGCAAACACAATAAA 59.853 34.615 0.00 0.00 0.00 1.40
1358 4727 6.727215 CAAACACAATAAATGCAGCCTTTTT 58.273 32.000 0.58 0.00 0.00 1.94
1359 4728 6.544038 AACACAATAAATGCAGCCTTTTTC 57.456 33.333 0.58 0.00 0.00 2.29
1361 4730 6.290605 ACACAATAAATGCAGCCTTTTTCTT 58.709 32.000 0.58 0.00 0.00 2.52
1362 4731 6.424812 ACACAATAAATGCAGCCTTTTTCTTC 59.575 34.615 0.58 0.00 0.00 2.87
1415 4841 0.843984 TATTGCTACCTTGCCCTCCC 59.156 55.000 0.00 0.00 0.00 4.30
1476 4902 3.632604 TCACGAACTCTGAACTGAAGTCT 59.367 43.478 0.00 0.00 0.00 3.24
1511 4937 7.121759 AGGTGTTTGATTACTTCATTCATGAGG 59.878 37.037 0.00 0.00 38.19 3.86
1572 5007 4.832608 GTACGGGGCAGGGAAGCG 62.833 72.222 0.00 0.00 34.64 4.68
1612 5047 2.404186 CGTCGACGGGACAGGATGA 61.404 63.158 29.70 0.00 46.42 2.92
1645 5080 3.238260 CAGACACGACTGCACTGC 58.762 61.111 0.00 0.00 0.00 4.40
1647 5082 1.592669 AGACACGACTGCACTGCAC 60.593 57.895 0.00 0.00 33.79 4.57
1648 5083 1.882625 GACACGACTGCACTGCACA 60.883 57.895 0.00 0.00 33.79 4.57
1649 5084 1.825285 GACACGACTGCACTGCACAG 61.825 60.000 0.00 1.47 41.08 3.66
1681 5116 0.739813 ATGACGGGCAAAGTCGTAGC 60.740 55.000 0.00 0.00 41.24 3.58
1682 5117 2.431942 ACGGGCAAAGTCGTAGCG 60.432 61.111 0.00 0.00 37.88 4.26
1683 5118 2.431942 CGGGCAAAGTCGTAGCGT 60.432 61.111 0.00 0.00 0.00 5.07
1684 5119 1.153978 CGGGCAAAGTCGTAGCGTA 60.154 57.895 0.00 0.00 0.00 4.42
1685 5120 1.138047 CGGGCAAAGTCGTAGCGTAG 61.138 60.000 0.00 0.00 0.00 3.51
1718 5153 2.351738 CGTTTTGACCTGAATCTTGGCC 60.352 50.000 0.00 0.00 0.00 5.36
1719 5154 2.627699 GTTTTGACCTGAATCTTGGCCA 59.372 45.455 0.00 0.00 0.00 5.36
1720 5155 2.205022 TTGACCTGAATCTTGGCCAG 57.795 50.000 5.11 0.00 0.00 4.85
1723 5158 3.677963 CCTGAATCTTGGCCAGGTT 57.322 52.632 15.41 7.57 41.81 3.50
1724 5159 1.180029 CCTGAATCTTGGCCAGGTTG 58.820 55.000 15.41 2.83 41.81 3.77
1727 5162 0.251787 GAATCTTGGCCAGGTTGGGT 60.252 55.000 15.41 0.00 38.19 4.51
1728 5163 1.005450 GAATCTTGGCCAGGTTGGGTA 59.995 52.381 15.41 0.00 38.19 3.69
1729 5164 0.331616 ATCTTGGCCAGGTTGGGTAC 59.668 55.000 15.41 0.00 38.19 3.34
1730 5165 1.674322 CTTGGCCAGGTTGGGTACG 60.674 63.158 5.11 0.00 38.19 3.67
1731 5166 3.853698 TTGGCCAGGTTGGGTACGC 62.854 63.158 5.11 2.35 38.19 4.42
1732 5167 4.029809 GGCCAGGTTGGGTACGCT 62.030 66.667 11.59 0.00 38.19 5.07
1733 5168 2.746277 GCCAGGTTGGGTACGCTG 60.746 66.667 11.59 0.85 38.19 5.18
1734 5169 2.046314 CCAGGTTGGGTACGCTGG 60.046 66.667 11.59 6.52 38.21 4.85
1735 5170 2.747686 CAGGTTGGGTACGCTGGT 59.252 61.111 11.59 0.00 0.00 4.00
1738 5173 1.670083 GGTTGGGTACGCTGGTGTC 60.670 63.158 11.59 0.00 0.00 3.67
1752 5198 1.115467 GGTGTCCGGATCTGTGATCT 58.885 55.000 7.81 0.00 0.00 2.75
1754 5200 2.544685 GTGTCCGGATCTGTGATCTTG 58.455 52.381 7.81 1.79 0.00 3.02
1755 5201 2.093973 GTGTCCGGATCTGTGATCTTGT 60.094 50.000 7.81 0.00 0.00 3.16
1760 5206 2.679059 CGGATCTGTGATCTTGTTGGCT 60.679 50.000 7.38 0.00 0.00 4.75
1781 5227 3.005539 ACTGCAGTGGCCGGATCT 61.006 61.111 20.97 0.00 40.13 2.75
1790 5236 2.091541 GTGGCCGGATCTGATGAAAAA 58.908 47.619 5.05 0.00 0.00 1.94
1825 5271 2.720758 CTTGTCGCGCCGTCTCAAG 61.721 63.158 0.00 6.09 0.00 3.02
1826 5272 3.202216 TTGTCGCGCCGTCTCAAGA 62.202 57.895 0.00 0.00 0.00 3.02
1827 5273 2.430244 GTCGCGCCGTCTCAAGAA 60.430 61.111 0.00 0.00 0.00 2.52
1828 5274 1.805945 GTCGCGCCGTCTCAAGAAT 60.806 57.895 0.00 0.00 0.00 2.40
1829 5275 1.516386 TCGCGCCGTCTCAAGAATC 60.516 57.895 0.00 0.00 0.00 2.52
1830 5276 1.517257 CGCGCCGTCTCAAGAATCT 60.517 57.895 0.00 0.00 0.00 2.40
1831 5277 1.746727 CGCGCCGTCTCAAGAATCTG 61.747 60.000 0.00 0.00 0.00 2.90
1832 5278 0.458543 GCGCCGTCTCAAGAATCTGA 60.459 55.000 0.00 0.00 0.00 3.27
1833 5279 1.272781 CGCCGTCTCAAGAATCTGAC 58.727 55.000 0.00 0.00 0.00 3.51
1834 5280 1.646189 GCCGTCTCAAGAATCTGACC 58.354 55.000 0.00 0.00 0.00 4.02
1835 5281 1.205893 GCCGTCTCAAGAATCTGACCT 59.794 52.381 0.00 0.00 0.00 3.85
1836 5282 2.737039 GCCGTCTCAAGAATCTGACCTC 60.737 54.545 0.00 0.00 0.00 3.85
1837 5283 2.159170 CCGTCTCAAGAATCTGACCTCC 60.159 54.545 0.00 0.00 0.00 4.30
1838 5284 2.493675 CGTCTCAAGAATCTGACCTCCA 59.506 50.000 0.00 0.00 0.00 3.86
1844 5290 5.738909 TCAAGAATCTGACCTCCAAATCTC 58.261 41.667 0.00 0.00 0.00 2.75
1915 5366 1.680249 GGTTCCAGCTCAACCTCATCC 60.680 57.143 14.61 0.00 40.33 3.51
1920 5373 2.158986 CCAGCTCAACCTCATCCTACTG 60.159 54.545 0.00 0.00 0.00 2.74
1934 5387 3.793559 TCCTACTGCTCGAATAAAAGGC 58.206 45.455 0.00 0.00 0.00 4.35
1978 5433 4.549458 CACAAAGACCTCGCAATGAAATT 58.451 39.130 0.00 0.00 36.63 1.82
2002 5457 2.202892 GGCTCCGTCGGTCAATCC 60.203 66.667 11.88 2.99 0.00 3.01
2004 5459 1.519455 GCTCCGTCGGTCAATCCAG 60.519 63.158 11.88 0.00 35.57 3.86
2005 5460 1.945354 GCTCCGTCGGTCAATCCAGA 61.945 60.000 11.88 0.00 35.57 3.86
2006 5461 0.101399 CTCCGTCGGTCAATCCAGAG 59.899 60.000 11.88 0.00 35.57 3.35
2007 5462 0.611062 TCCGTCGGTCAATCCAGAGT 60.611 55.000 11.88 0.00 35.57 3.24
2008 5463 0.458543 CCGTCGGTCAATCCAGAGTG 60.459 60.000 2.08 0.00 35.57 3.51
2022 5478 6.773976 ATCCAGAGTGAAAGAACAACAAAA 57.226 33.333 0.00 0.00 0.00 2.44
2023 5479 6.194796 TCCAGAGTGAAAGAACAACAAAAG 57.805 37.500 0.00 0.00 0.00 2.27
2024 5480 5.710099 TCCAGAGTGAAAGAACAACAAAAGT 59.290 36.000 0.00 0.00 0.00 2.66
2025 5481 6.882140 TCCAGAGTGAAAGAACAACAAAAGTA 59.118 34.615 0.00 0.00 0.00 2.24
2026 5482 7.556275 TCCAGAGTGAAAGAACAACAAAAGTAT 59.444 33.333 0.00 0.00 0.00 2.12
2027 5483 8.190784 CCAGAGTGAAAGAACAACAAAAGTATT 58.809 33.333 0.00 0.00 0.00 1.89
2032 5488 9.155053 GTGAAAGAACAACAAAAGTATTCTACG 57.845 33.333 0.00 0.00 0.00 3.51
2067 5523 8.798975 ATAGGATTTTAGAGTGTATTCCTCCA 57.201 34.615 0.00 0.00 0.00 3.86
2068 5524 7.510675 AGGATTTTAGAGTGTATTCCTCCAA 57.489 36.000 0.00 0.00 0.00 3.53
2069 5525 7.339482 AGGATTTTAGAGTGTATTCCTCCAAC 58.661 38.462 0.00 0.00 0.00 3.77
2070 5526 7.182930 AGGATTTTAGAGTGTATTCCTCCAACT 59.817 37.037 0.00 0.00 0.00 3.16
2071 5527 8.483758 GGATTTTAGAGTGTATTCCTCCAACTA 58.516 37.037 0.00 0.00 0.00 2.24
2072 5528 9.535878 GATTTTAGAGTGTATTCCTCCAACTAG 57.464 37.037 0.00 0.00 0.00 2.57
2073 5529 6.466885 TTAGAGTGTATTCCTCCAACTAGC 57.533 41.667 0.00 0.00 0.00 3.42
2074 5530 4.353777 AGAGTGTATTCCTCCAACTAGCA 58.646 43.478 0.00 0.00 0.00 3.49
2075 5531 4.777896 AGAGTGTATTCCTCCAACTAGCAA 59.222 41.667 0.00 0.00 0.00 3.91
2076 5532 5.091261 AGTGTATTCCTCCAACTAGCAAG 57.909 43.478 0.00 0.00 0.00 4.01
2077 5533 4.532521 AGTGTATTCCTCCAACTAGCAAGT 59.467 41.667 0.00 0.00 37.65 3.16
2078 5534 5.720041 AGTGTATTCCTCCAACTAGCAAGTA 59.280 40.000 0.00 0.00 33.75 2.24
2079 5535 6.384305 AGTGTATTCCTCCAACTAGCAAGTAT 59.616 38.462 0.00 0.00 33.75 2.12
2080 5536 6.702282 GTGTATTCCTCCAACTAGCAAGTATC 59.298 42.308 0.00 0.00 33.75 2.24
2081 5537 6.611642 TGTATTCCTCCAACTAGCAAGTATCT 59.388 38.462 0.00 0.00 33.75 1.98
2082 5538 5.599999 TTCCTCCAACTAGCAAGTATCTC 57.400 43.478 0.00 0.00 33.75 2.75
2083 5539 3.961408 TCCTCCAACTAGCAAGTATCTCC 59.039 47.826 0.00 0.00 33.75 3.71
2084 5540 3.070302 CCTCCAACTAGCAAGTATCTCCC 59.930 52.174 0.00 0.00 33.75 4.30
2085 5541 3.039011 TCCAACTAGCAAGTATCTCCCC 58.961 50.000 0.00 0.00 33.75 4.81
2086 5542 3.041946 CCAACTAGCAAGTATCTCCCCT 58.958 50.000 0.00 0.00 33.75 4.79
2087 5543 3.070302 CCAACTAGCAAGTATCTCCCCTC 59.930 52.174 0.00 0.00 33.75 4.30
2088 5544 2.965562 ACTAGCAAGTATCTCCCCTCC 58.034 52.381 0.00 0.00 32.84 4.30
2089 5545 2.252714 CTAGCAAGTATCTCCCCTCCC 58.747 57.143 0.00 0.00 0.00 4.30
2090 5546 0.400670 AGCAAGTATCTCCCCTCCCC 60.401 60.000 0.00 0.00 0.00 4.81
2091 5547 0.400670 GCAAGTATCTCCCCTCCCCT 60.401 60.000 0.00 0.00 0.00 4.79
2092 5548 1.723288 CAAGTATCTCCCCTCCCCTC 58.277 60.000 0.00 0.00 0.00 4.30
2093 5549 0.568697 AAGTATCTCCCCTCCCCTCC 59.431 60.000 0.00 0.00 0.00 4.30
2094 5550 1.158944 GTATCTCCCCTCCCCTCCC 59.841 68.421 0.00 0.00 0.00 4.30
2095 5551 1.010351 TATCTCCCCTCCCCTCCCT 59.990 63.158 0.00 0.00 0.00 4.20
2096 5552 1.080927 TATCTCCCCTCCCCTCCCTC 61.081 65.000 0.00 0.00 0.00 4.30
2097 5553 2.929738 ATCTCCCCTCCCCTCCCTCT 62.930 65.000 0.00 0.00 0.00 3.69
2098 5554 2.543637 TCCCCTCCCCTCCCTCTT 60.544 66.667 0.00 0.00 0.00 2.85
2099 5555 2.367512 CCCCTCCCCTCCCTCTTG 60.368 72.222 0.00 0.00 0.00 3.02
2100 5556 3.093172 CCCTCCCCTCCCTCTTGC 61.093 72.222 0.00 0.00 0.00 4.01
2101 5557 3.474570 CCTCCCCTCCCTCTTGCG 61.475 72.222 0.00 0.00 0.00 4.85
2102 5558 4.168291 CTCCCCTCCCTCTTGCGC 62.168 72.222 0.00 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.957759 AAACAGCAGTACAAAACTTCGT 57.042 36.364 0.00 0.00 35.76 3.85
1 2 4.904154 GCTAAACAGCAGTACAAAACTTCG 59.096 41.667 0.00 0.00 35.76 3.79
2 3 6.061231 AGCTAAACAGCAGTACAAAACTTC 57.939 37.500 0.00 0.00 35.76 3.01
3 4 5.008712 GGAGCTAAACAGCAGTACAAAACTT 59.991 40.000 0.00 0.00 35.76 2.66
4 5 4.515567 GGAGCTAAACAGCAGTACAAAACT 59.484 41.667 0.00 0.00 39.81 2.66
5 6 4.515567 AGGAGCTAAACAGCAGTACAAAAC 59.484 41.667 0.00 0.00 37.25 2.43
6 7 4.714632 AGGAGCTAAACAGCAGTACAAAA 58.285 39.130 0.00 0.00 37.25 2.44
7 8 4.351874 AGGAGCTAAACAGCAGTACAAA 57.648 40.909 0.00 0.00 37.25 2.83
13 14 4.727507 TCTCTAAGGAGCTAAACAGCAG 57.272 45.455 0.00 0.00 39.31 4.24
22 23 2.428890 CACAACGGATCTCTAAGGAGCT 59.571 50.000 0.00 0.00 39.31 4.09
35 36 2.094906 CAGTTCCTCGATACACAACGGA 60.095 50.000 0.00 0.00 0.00 4.69
40 41 2.611971 GGCAACAGTTCCTCGATACACA 60.612 50.000 0.00 0.00 0.00 3.72
55 56 3.153919 GGGTTACAATCAAGAGGCAACA 58.846 45.455 0.00 0.00 41.41 3.33
94 95 0.111446 TTTGCGGGAGGAATGTGGAA 59.889 50.000 0.00 0.00 40.80 3.53
99 100 2.493278 ACAATTCTTTGCGGGAGGAATG 59.507 45.455 0.00 0.00 40.80 2.67
103 104 0.447801 CGACAATTCTTTGCGGGAGG 59.552 55.000 0.00 0.00 36.22 4.30
106 107 0.447801 CCTCGACAATTCTTTGCGGG 59.552 55.000 0.00 0.00 36.22 6.13
108 109 2.969443 AACCTCGACAATTCTTTGCG 57.031 45.000 0.00 0.00 36.22 4.85
136 146 0.531657 TCGGGCGGAATAAGAAACGA 59.468 50.000 0.00 0.00 0.00 3.85
138 148 3.835378 TTTTCGGGCGGAATAAGAAAC 57.165 42.857 8.39 0.00 33.85 2.78
145 155 1.814394 GTAACCTTTTTCGGGCGGAAT 59.186 47.619 8.39 0.00 33.85 3.01
153 163 4.444056 CAGCAAACATGGTAACCTTTTTCG 59.556 41.667 0.00 0.00 0.00 3.46
154 164 5.356426 ACAGCAAACATGGTAACCTTTTTC 58.644 37.500 0.00 0.00 0.00 2.29
172 182 0.530744 CGTAGCCTACCTCAACAGCA 59.469 55.000 0.00 0.00 0.00 4.41
173 183 0.179108 CCGTAGCCTACCTCAACAGC 60.179 60.000 0.00 0.00 0.00 4.40
178 188 1.754803 CATTCACCGTAGCCTACCTCA 59.245 52.381 0.00 0.00 0.00 3.86
186 196 3.703420 ACGTTAGATCATTCACCGTAGC 58.297 45.455 0.00 0.00 0.00 3.58
187 197 5.803461 TGAAACGTTAGATCATTCACCGTAG 59.197 40.000 0.00 0.00 0.00 3.51
219 229 6.899393 TGAATCAAAAGATGCCACTAAAGT 57.101 33.333 0.00 0.00 0.00 2.66
252 262 8.489559 CCATGTTTTTCATAGTCATGTGTTTTG 58.510 33.333 0.00 0.00 35.54 2.44
258 268 7.178983 ACAATCCCATGTTTTTCATAGTCATGT 59.821 33.333 0.00 0.00 35.54 3.21
264 274 8.066612 AGGTTACAATCCCATGTTTTTCATAG 57.933 34.615 0.00 0.00 34.67 2.23
274 284 2.624838 GGCATGAGGTTACAATCCCATG 59.375 50.000 0.00 0.00 37.05 3.66
275 285 2.515429 AGGCATGAGGTTACAATCCCAT 59.485 45.455 0.00 0.00 0.00 4.00
276 286 1.922447 AGGCATGAGGTTACAATCCCA 59.078 47.619 0.00 0.00 0.00 4.37
277 287 2.736670 AGGCATGAGGTTACAATCCC 57.263 50.000 0.00 0.00 0.00 3.85
278 288 5.405935 AAAAAGGCATGAGGTTACAATCC 57.594 39.130 0.00 0.00 0.00 3.01
311 322 6.183360 CGGTCAAGCAAACCAAATTTTTGTAA 60.183 34.615 2.63 0.00 36.50 2.41
319 358 0.749649 TGCGGTCAAGCAAACCAAAT 59.250 45.000 3.50 0.00 45.06 2.32
321 360 3.926003 TGCGGTCAAGCAAACCAA 58.074 50.000 3.50 0.00 45.06 3.67
349 389 7.670140 TCATCTACTCAACCTGTTAGAGAGAAA 59.330 37.037 12.98 5.69 33.69 2.52
414 454 9.857957 GCTCAACTAGTACTAAAGATGTACTTT 57.142 33.333 11.06 0.00 45.60 2.66
415 455 9.245481 AGCTCAACTAGTACTAAAGATGTACTT 57.755 33.333 11.06 0.00 45.60 2.24
430 528 6.586844 GTGAAAAGTCGATTAGCTCAACTAGT 59.413 38.462 0.00 0.00 30.79 2.57
431 529 6.035112 GGTGAAAAGTCGATTAGCTCAACTAG 59.965 42.308 0.00 0.00 30.79 2.57
444 542 0.604578 CCCTACGGGTGAAAAGTCGA 59.395 55.000 0.00 0.00 38.25 4.20
457 555 3.869246 GTGATGGATTGTTGTACCCTACG 59.131 47.826 0.00 0.00 0.00 3.51
458 556 4.839121 TGTGATGGATTGTTGTACCCTAC 58.161 43.478 0.00 0.00 0.00 3.18
459 557 4.780554 TCTGTGATGGATTGTTGTACCCTA 59.219 41.667 0.00 0.00 0.00 3.53
460 558 3.587061 TCTGTGATGGATTGTTGTACCCT 59.413 43.478 0.00 0.00 0.00 4.34
461 559 3.689649 GTCTGTGATGGATTGTTGTACCC 59.310 47.826 0.00 0.00 0.00 3.69
464 562 4.632327 TGGTCTGTGATGGATTGTTGTA 57.368 40.909 0.00 0.00 0.00 2.41
482 581 3.118920 GCCGGGTATTAAATTTGCTTGGT 60.119 43.478 2.18 0.00 0.00 3.67
597 3845 4.212214 CGTTTTCTGAAAGGTCAAGGAGAG 59.788 45.833 2.75 0.00 31.88 3.20
599 3847 3.304057 GCGTTTTCTGAAAGGTCAAGGAG 60.304 47.826 2.75 0.00 34.11 3.69
654 3902 2.359975 GTTCCGGGTTGGGAGCTG 60.360 66.667 0.00 0.00 37.40 4.24
667 3924 2.591715 CATCGGCATCGGGGTTCC 60.592 66.667 0.00 0.00 36.95 3.62
669 3926 4.875713 GGCATCGGCATCGGGGTT 62.876 66.667 0.00 0.00 43.71 4.11
721 4001 3.795041 CAGGCTCAGGCAGGAGGG 61.795 72.222 0.00 0.00 40.87 4.30
722 4002 2.686470 TCAGGCTCAGGCAGGAGG 60.686 66.667 0.00 0.00 40.87 4.30
723 4003 2.288778 TGTCAGGCTCAGGCAGGAG 61.289 63.158 0.00 2.20 40.87 3.69
724 4004 2.203832 TGTCAGGCTCAGGCAGGA 60.204 61.111 0.00 0.00 40.87 3.86
725 4005 2.046507 GTGTCAGGCTCAGGCAGG 60.047 66.667 0.00 0.00 40.87 4.85
726 4006 2.046507 GGTGTCAGGCTCAGGCAG 60.047 66.667 0.00 0.00 40.87 4.85
727 4007 3.640407 GGGTGTCAGGCTCAGGCA 61.640 66.667 0.00 0.00 40.87 4.75
728 4008 4.416738 GGGGTGTCAGGCTCAGGC 62.417 72.222 0.00 0.00 37.82 4.85
768 4048 3.002149 CGTCGTGCTTTTCTTTTGTGTTG 60.002 43.478 0.00 0.00 0.00 3.33
782 4062 4.039357 CTGGGTCGTCGTCGTGCT 62.039 66.667 1.33 0.00 38.33 4.40
832 4112 4.660938 GAAGCTTGTGGGGGCGGT 62.661 66.667 2.10 0.00 0.00 5.68
833 4113 4.351054 AGAAGCTTGTGGGGGCGG 62.351 66.667 2.10 0.00 0.00 6.13
912 4193 4.760047 GGATGCGGTGGTCGTGCT 62.760 66.667 0.00 0.00 41.72 4.40
924 4205 3.654020 GAATGGCGCCGAGGATGC 61.654 66.667 23.90 3.98 0.00 3.91
947 4228 2.046314 GCTTAGCGGCCACTTGGA 60.046 61.111 2.24 0.00 37.39 3.53
973 4254 1.005242 CATTTCACAGAGCGATCGCAG 60.005 52.381 38.60 28.84 44.88 5.18
978 4259 0.723414 CGCACATTTCACAGAGCGAT 59.277 50.000 0.00 0.00 45.41 4.58
980 4261 1.133253 CCGCACATTTCACAGAGCG 59.867 57.895 0.00 0.00 42.92 5.03
981 4262 1.154150 GCCGCACATTTCACAGAGC 60.154 57.895 0.00 0.00 0.00 4.09
982 4263 0.806868 ATGCCGCACATTTCACAGAG 59.193 50.000 0.00 0.00 34.40 3.35
983 4264 0.522626 CATGCCGCACATTTCACAGA 59.477 50.000 0.00 0.00 36.64 3.41
1205 4538 1.520787 CGCTGTGAATACCCGGTCC 60.521 63.158 0.00 0.00 0.00 4.46
1213 4569 0.248907 GCGGACTAGCGCTGTGAATA 60.249 55.000 22.90 0.00 0.00 1.75
1268 4627 0.398381 AAACAGGGCCTTGGCAAAGA 60.398 50.000 20.34 0.00 35.19 2.52
1415 4841 6.371548 TCAGGAATTAATTCACAAGGTTCTCG 59.628 38.462 25.55 9.03 38.53 4.04
1476 4902 5.316167 AGTAATCAAACACCTGATGAAGCA 58.684 37.500 0.00 0.00 36.16 3.91
1511 4937 5.236478 TCTTCAATCTTTCGTGTCTTGTTCC 59.764 40.000 0.00 0.00 0.00 3.62
1572 5007 0.322546 AACAATTCCCTCCGCTGACC 60.323 55.000 0.00 0.00 0.00 4.02
1612 5047 1.131504 GTCTGCGTCGAGAGAGACAAT 59.868 52.381 11.11 0.00 43.49 2.71
1643 5078 3.129462 TCATTTGTTTTTCGTCCTGTGCA 59.871 39.130 0.00 0.00 0.00 4.57
1645 5080 3.723764 CGTCATTTGTTTTTCGTCCTGTG 59.276 43.478 0.00 0.00 0.00 3.66
1647 5082 3.296628 CCGTCATTTGTTTTTCGTCCTG 58.703 45.455 0.00 0.00 0.00 3.86
1648 5083 2.292292 CCCGTCATTTGTTTTTCGTCCT 59.708 45.455 0.00 0.00 0.00 3.85
1649 5084 2.657184 CCCGTCATTTGTTTTTCGTCC 58.343 47.619 0.00 0.00 0.00 4.79
1681 5116 1.874345 AACGCTGACCCTGACCTACG 61.874 60.000 0.00 0.00 0.00 3.51
1682 5117 0.320697 AAACGCTGACCCTGACCTAC 59.679 55.000 0.00 0.00 0.00 3.18
1683 5118 1.053424 AAAACGCTGACCCTGACCTA 58.947 50.000 0.00 0.00 0.00 3.08
1684 5119 0.535102 CAAAACGCTGACCCTGACCT 60.535 55.000 0.00 0.00 0.00 3.85
1685 5120 0.534203 TCAAAACGCTGACCCTGACC 60.534 55.000 0.00 0.00 0.00 4.02
1718 5153 1.671054 CACCAGCGTACCCAACCTG 60.671 63.158 0.00 0.00 0.00 4.00
1719 5154 2.108278 GACACCAGCGTACCCAACCT 62.108 60.000 0.00 0.00 0.00 3.50
1720 5155 1.670083 GACACCAGCGTACCCAACC 60.670 63.158 0.00 0.00 0.00 3.77
1722 5157 2.745037 GGACACCAGCGTACCCAA 59.255 61.111 0.00 0.00 0.00 4.12
1723 5158 3.687102 CGGACACCAGCGTACCCA 61.687 66.667 0.00 0.00 0.00 4.51
1724 5159 4.446413 CCGGACACCAGCGTACCC 62.446 72.222 0.00 0.00 0.00 3.69
1727 5162 1.379443 AGATCCGGACACCAGCGTA 60.379 57.895 6.12 0.00 0.00 4.42
1728 5163 2.680352 AGATCCGGACACCAGCGT 60.680 61.111 6.12 0.00 0.00 5.07
1729 5164 2.202797 CAGATCCGGACACCAGCG 60.203 66.667 6.12 0.00 0.00 5.18
1730 5165 1.448540 CACAGATCCGGACACCAGC 60.449 63.158 6.12 0.00 0.00 4.85
1731 5166 0.826715 ATCACAGATCCGGACACCAG 59.173 55.000 6.12 2.67 0.00 4.00
1732 5167 0.824109 GATCACAGATCCGGACACCA 59.176 55.000 6.12 0.00 0.00 4.17
1733 5168 1.115467 AGATCACAGATCCGGACACC 58.885 55.000 6.12 0.00 0.00 4.16
1734 5169 2.093973 ACAAGATCACAGATCCGGACAC 60.094 50.000 6.12 3.95 0.00 3.67
1735 5170 2.179427 ACAAGATCACAGATCCGGACA 58.821 47.619 6.12 0.00 0.00 4.02
1738 5173 2.283298 CCAACAAGATCACAGATCCGG 58.717 52.381 0.00 0.00 0.00 5.14
1752 5198 2.515757 TGCAGTGCGAGCCAACAA 60.516 55.556 11.20 0.00 0.00 2.83
1754 5200 2.974698 ACTGCAGTGCGAGCCAAC 60.975 61.111 20.97 0.00 0.00 3.77
1755 5201 2.974148 CACTGCAGTGCGAGCCAA 60.974 61.111 32.39 0.00 39.39 4.52
1781 5227 5.771153 TGTCAAGTGCTGATTTTTCATCA 57.229 34.783 0.00 0.00 36.14 3.07
1825 5271 3.876320 GCAGAGATTTGGAGGTCAGATTC 59.124 47.826 0.00 0.00 0.00 2.52
1826 5272 3.522750 AGCAGAGATTTGGAGGTCAGATT 59.477 43.478 0.00 0.00 0.00 2.40
1827 5273 3.113824 AGCAGAGATTTGGAGGTCAGAT 58.886 45.455 0.00 0.00 0.00 2.90
1828 5274 2.544721 AGCAGAGATTTGGAGGTCAGA 58.455 47.619 0.00 0.00 0.00 3.27
1829 5275 3.055240 AGAAGCAGAGATTTGGAGGTCAG 60.055 47.826 0.00 0.00 0.00 3.51
1830 5276 2.909006 AGAAGCAGAGATTTGGAGGTCA 59.091 45.455 0.00 0.00 0.00 4.02
1831 5277 3.055530 TCAGAAGCAGAGATTTGGAGGTC 60.056 47.826 0.00 0.00 0.00 3.85
1832 5278 2.909006 TCAGAAGCAGAGATTTGGAGGT 59.091 45.455 0.00 0.00 0.00 3.85
1833 5279 3.623906 TCAGAAGCAGAGATTTGGAGG 57.376 47.619 0.00 0.00 0.00 4.30
1834 5280 4.577875 ACTTCAGAAGCAGAGATTTGGAG 58.422 43.478 10.33 0.00 0.00 3.86
1835 5281 4.285517 AGACTTCAGAAGCAGAGATTTGGA 59.714 41.667 10.33 0.00 0.00 3.53
1836 5282 4.392445 CAGACTTCAGAAGCAGAGATTTGG 59.608 45.833 10.33 0.00 0.00 3.28
1837 5283 5.236282 TCAGACTTCAGAAGCAGAGATTTG 58.764 41.667 10.33 0.00 0.00 2.32
1838 5284 5.480642 TCAGACTTCAGAAGCAGAGATTT 57.519 39.130 10.33 0.00 0.00 2.17
1844 5290 4.753610 TCAATGTTCAGACTTCAGAAGCAG 59.246 41.667 10.33 0.67 0.00 4.24
1915 5366 4.268884 GTCAGCCTTTTATTCGAGCAGTAG 59.731 45.833 0.00 0.00 0.00 2.57
1920 5373 2.633488 AGGTCAGCCTTTTATTCGAGC 58.367 47.619 0.00 0.00 44.18 5.03
1934 5387 4.142182 TGCTTTGGTTTTGAAGAAGGTCAG 60.142 41.667 0.00 0.00 0.00 3.51
1946 5401 3.428862 CGAGGTCTTTGTGCTTTGGTTTT 60.429 43.478 0.00 0.00 0.00 2.43
1985 5440 2.202892 GGATTGACCGACGGAGCC 60.203 66.667 23.38 6.77 0.00 4.70
2002 5457 9.226345 GAATACTTTTGTTGTTCTTTCACTCTG 57.774 33.333 0.00 0.00 0.00 3.35
2006 5461 9.155053 CGTAGAATACTTTTGTTGTTCTTTCAC 57.845 33.333 0.00 0.00 40.12 3.18
2007 5462 8.339714 CCGTAGAATACTTTTGTTGTTCTTTCA 58.660 33.333 0.00 0.00 40.12 2.69
2008 5463 8.553696 TCCGTAGAATACTTTTGTTGTTCTTTC 58.446 33.333 0.00 0.00 40.12 2.62
2043 5499 8.483758 GTTGGAGGAATACACTCTAAAATCCTA 58.516 37.037 0.00 0.00 37.22 2.94
2048 5504 7.038587 TGCTAGTTGGAGGAATACACTCTAAAA 60.039 37.037 0.00 0.00 37.22 1.52
2049 5505 6.439375 TGCTAGTTGGAGGAATACACTCTAAA 59.561 38.462 0.00 0.00 37.22 1.85
2050 5506 5.955959 TGCTAGTTGGAGGAATACACTCTAA 59.044 40.000 0.00 0.00 33.78 2.10
2051 5507 5.516044 TGCTAGTTGGAGGAATACACTCTA 58.484 41.667 0.00 0.00 35.34 2.43
2052 5508 4.353777 TGCTAGTTGGAGGAATACACTCT 58.646 43.478 0.00 0.00 35.34 3.24
2053 5509 4.737855 TGCTAGTTGGAGGAATACACTC 57.262 45.455 0.00 0.00 0.00 3.51
2054 5510 4.532521 ACTTGCTAGTTGGAGGAATACACT 59.467 41.667 0.00 0.00 0.00 3.55
2055 5511 4.833390 ACTTGCTAGTTGGAGGAATACAC 58.167 43.478 0.00 0.00 0.00 2.90
2056 5512 6.611642 AGATACTTGCTAGTTGGAGGAATACA 59.388 38.462 6.03 0.00 35.78 2.29
2057 5513 7.056844 AGATACTTGCTAGTTGGAGGAATAC 57.943 40.000 6.03 0.00 35.78 1.89
2058 5514 6.267928 GGAGATACTTGCTAGTTGGAGGAATA 59.732 42.308 6.03 0.00 35.78 1.75
2059 5515 5.071115 GGAGATACTTGCTAGTTGGAGGAAT 59.929 44.000 6.03 0.00 35.78 3.01
2060 5516 4.406003 GGAGATACTTGCTAGTTGGAGGAA 59.594 45.833 6.03 0.00 35.78 3.36
2061 5517 3.961408 GGAGATACTTGCTAGTTGGAGGA 59.039 47.826 6.03 0.00 35.78 3.71
2062 5518 3.070302 GGGAGATACTTGCTAGTTGGAGG 59.930 52.174 6.03 0.00 35.78 4.30
2063 5519 3.070302 GGGGAGATACTTGCTAGTTGGAG 59.930 52.174 6.03 0.00 35.78 3.86
2064 5520 3.039011 GGGGAGATACTTGCTAGTTGGA 58.961 50.000 6.03 0.00 35.78 3.53
2065 5521 3.041946 AGGGGAGATACTTGCTAGTTGG 58.958 50.000 6.03 0.00 35.78 3.77
2066 5522 3.070302 GGAGGGGAGATACTTGCTAGTTG 59.930 52.174 6.03 0.00 35.78 3.16
2067 5523 3.310193 GGAGGGGAGATACTTGCTAGTT 58.690 50.000 6.03 0.00 35.78 2.24
2068 5524 2.426561 GGGAGGGGAGATACTTGCTAGT 60.427 54.545 6.00 6.00 38.44 2.57
2069 5525 2.252714 GGGAGGGGAGATACTTGCTAG 58.747 57.143 0.00 0.00 0.00 3.42
2070 5526 1.132817 GGGGAGGGGAGATACTTGCTA 60.133 57.143 0.00 0.00 0.00 3.49
2071 5527 0.400670 GGGGAGGGGAGATACTTGCT 60.401 60.000 0.00 0.00 0.00 3.91
2072 5528 0.400670 AGGGGAGGGGAGATACTTGC 60.401 60.000 0.00 0.00 0.00 4.01
2073 5529 1.723288 GAGGGGAGGGGAGATACTTG 58.277 60.000 0.00 0.00 0.00 3.16
2074 5530 0.568697 GGAGGGGAGGGGAGATACTT 59.431 60.000 0.00 0.00 0.00 2.24
2075 5531 1.381089 GGGAGGGGAGGGGAGATACT 61.381 65.000 0.00 0.00 0.00 2.12
2076 5532 1.158944 GGGAGGGGAGGGGAGATAC 59.841 68.421 0.00 0.00 0.00 2.24
2077 5533 1.010351 AGGGAGGGGAGGGGAGATA 59.990 63.158 0.00 0.00 0.00 1.98
2078 5534 2.289979 AGGGAGGGGAGGGGAGAT 60.290 66.667 0.00 0.00 0.00 2.75
2079 5535 3.036959 GAGGGAGGGGAGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
2080 5536 2.652113 AAGAGGGAGGGGAGGGGAG 61.652 68.421 0.00 0.00 0.00 4.30
2081 5537 2.543637 AAGAGGGAGGGGAGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
2082 5538 2.367512 CAAGAGGGAGGGGAGGGG 60.368 72.222 0.00 0.00 0.00 4.79
2083 5539 3.093172 GCAAGAGGGAGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
2084 5540 3.474570 CGCAAGAGGGAGGGGAGG 61.475 72.222 0.00 0.00 43.02 4.30
2085 5541 4.168291 GCGCAAGAGGGAGGGGAG 62.168 72.222 0.30 0.00 43.02 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.