>input_sequence_87351
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---------------------------------------------------------------------ATGCCGATCGC
CGGCTGCTTC------GGCGGGAAAGGGAAGGTGGGCGGCGGCGGCGGT------GCC------GCGCGCCCGCGCTACG
TGCCCAGGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTCATCAGCTGCTACCGCCCCGCCAGGACCGGGCCTCTG
CCGCGCTGA-----------------------------------------------------------------------
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-----------------
>chr6A_1_TraesCS6A01G299900
ACGAAGTTTTGTACTGCTGTTTAGCTCCTTAGAGATCCGTTGTGTATCGAGGAACTGTTGCCTCTTGATTGTAACCCTAT
AGCAACGGAATAAATTCCACATTCCTCCCGCAAAGAA---------TTGTCGAGGTTTACCATGTTCGTTTCTTATTCCG
CCCGAAAAAGGTTACCATGTTTGCTGTTGAGGTAGGCTACGGTGAATGATCTAACGTTTCAAATTTGAACTTTAGTGGCA
TCTTTTGATTCATAGTATTCTCAAAACACATGACTATGAAAAACATGG-GATTGTAACCTCATGCCTTTTTTTTATTCTT
AT----------------------------TACAAAAATTTGGTTTGCTTGACCGCATAAA-AAAACATTTCTCTCTAAC
AGGTTGAGTAGATGATAAATTTTCTATAAGAAAAAAAATATCTCGCAAAAATAAAA------------------------
----------------------------------GTACATCTTTAGTACTAGTTGAGCTAATCGACTTTTCACCCGTAGG
GTACAAC-AATCCATCACAGACCAAG------------------------------------------------------
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----------------------------------------------------CAAATTTAATACCCGGCCCCGCCAC---
GCCATGCTCGGCGCGCGGCCGCGGCTAGCGAGAGACTGCCCCGGGGCCGAGCGGGCGTTGATCCACTCAACTCAAACCTC
CCCCCTCTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCAGTGCCAGCTGCCCAGCTCCCA---------A
CCCGGAACCCCGATGCCGATGCCGAC-----------------------GCCCACCTGTCCACGGATCCCGATGCGGCCT
CCCTCCTGCCTGAGCCTGACACCCCGGCCCGGAGCCTCACACGCCCACAACACAAAAGAAAAGCACGACGACGACCCAGT
CGTCCCGCCCCCGCCGGTATAAATAAAGCTCACCGCCCCCACAAGCTTCTCACCTCAATCAGCAT-CAGCAAGCGACCTC
AGCAGCCATCCCCGAGCTCCTCCTCCCGACACAGCACGACCACCGCATCCTCGGCGCCATTCGAGCCTCCAAGTGGCCGC
TAAGCCGCCTGCGCTGCGATCGCT-----------------------------CTGTGAAATGTGCGGCATGCCGATCGC
CGGCTGCTTC------GGCGGGAAAGGGAAGGTGGGCGGCGGCGGCGGT------GCC------GCGCGCCCGCGCTACG
TGCCCAGGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTCATCAGCTGCTACCGCCCCGCCAGGACCGGGCCTCTG
CCGCGCTGAGGCTCGGCTCA-----CCCGCCGCCGCCGGCGTCCTTAATCGGCAGCGG----------------------
-GACCGGGTATTCACAGCGCTAGTCCGCCGGAGTCGACCAACCAGTGTAGTAGTAGTAGC---TCATCTTTGCCAAGGCC
CTGTTTTTAGCGCGAGCTCCACATTTCCACAGGGTCTTGAC--------GTTCGATCTAGCAAACACAA-TAAATGCAGC
C-TTTTTCTTCT-TTTTTGTTTGCCTCAAATGTC----------------------------------------------
----------CTGTTTTGAATTATTGCTACCTTGCCCTCCCGAGAACCTTGTGAATTAATTCCTGAAAGCCATCGTGCAT
CACGAACTCTGAACTGAAGTCTGCTTCATCAGGTGTTTGATTACTTCATTCATGAGGGAACAAGACACGAAAGATTGAAG
---------ACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCGGTCAGCGGAGGGAATTGTTTGCGTCGACGGGAC
AGGATGATTGTCTCTCTCGACGCAGACACGACTGCACTGCACAGGACGAAAAACAAATGACGGGCAAAGTCGTAGCGTAG
GTCAGGGTCAGCGTTTTGACCTGAATCTTGGCCAGGTTGGGTACGCTGGTGTC-----------CGGATCTGTGATCTTG
TTGGCTCGCACTGCAGTGGCCGGATCTGATGAAAAATCAGCACTTGACAAATCTTGTCGCGCCGTCTCAAGAATCTGACC
TCCAAATCTCTGCTTCTGAAGTCTGAACATTGACCAGGCTGCATTCTTGC-----TAACTCGGTTGGTTCCAGCTCAACC
TCATCC--TACTGCTCGAATAAAAGGCTGACCTTC--TTCAAAACCAAAGCACAAAGACCTCGCAATGAAATTGTCCCTG
GCTCCGTCGGTCAATCCAGAGTG-AAAGAACAACAAAAGTATTCTACGGATAAAATAATAGGATTTTAGAGTGTATTCCT
CCAACTAGCAAGTATCTCCCCTCCCCTCCCTCTTGCGCCGCCTCCCCTCGGGCGGCACACACCCGATCCCGCGCCGCCAG
CCCCTCCCCGCTCCTCC
>chr6B_9
--------TTGTATTGCTGTTTGGCTCCTTAGAGAACCGTCGTGTATCGAGGAACAGTTGCCTCTTGATTGTAACCCTAT
AGCAATGGAATAAAATCCATATTTCTTCGGCAAAGAAAAATAGTTGTTGTCGAGGTTTACCATGTACTTTTCTTTTTCCG
CCTAAAAAAGGTTACCATGTTCTCTGTCGAGGTAGAGTACGGTGAATGATCTAACGTTTCAAATTTGACCTTTAGTGGCA
TC-TTTGATTCATAGAATTCTGAAAACGCATGAATATGAAAAAACGTATGATTGTAACATCGTGGCTTCTTGAATTTTCT
AAACGCCCTTATATTTCTTTATCGAGGGAGTACAAAATTGTGGTTTGCTTGATTGCATCAAGAAAACAATTCTCTCTAAG
AGGTTGAGTAGATGATAAAATTCCTATCAGATTCAGTGCTGCAGGACATACTTCTGAGGTTAAAATTTTCATCTGATAAT
CTTTTGAATCAAAGATGCCGGTAAAAGTAGTATTGTACATCTTTAGTTGAACTACTAAC--------TTTCACCA----G
GGACAAC-AATCCATCATATCCCCATCAAATATATGGCAATGATAAATCCCGAACGTTTGGATTTTAAGCATGGCAACTT
TAGGTCACGTGAGGTTGGCAAACATTGCAATTTTCTGACAAAAAAAACAAACTGGGACAAAGTTGCCATGTCTTAACAAC
TAAAGTTGCCACCTTGCGTCAACTAGAGTTGCCATGTAAAGACGTTCGGAATGAAATGCTTAAAATCTGAACATTTTCGG
ATTGAGAAAATTCACTACAGGTCCATTTACTTGCACTGGTGTTAGCTTTAGTCCTCGTGGTTACAAATACCCGCAATACA
GTCACCAAACTTGCTTTAGGGGGTCATCTACGGTCCATTATACGGTTTGGTCTACGTACATGCTGATCTAGCCCGAGTCA
CCGCTGCCAAGTGTGCTTTGACTGCCACATCGTCCCAGCCCCTCGAATAAGCAGGGAACCAGGGGGTCTTTTACAAAAAT
GACTCAATCCCCTCGCTCCCTCCTCCCCTCGTTCCCTCCGCTTGGTCAACAGACTACCTCTTCCTCTGCTCTACCTCACG
TCCAGACATGAGCCTGCTCCGCCGAACCAGTGCGCCGTCGCCGTTGGGGGTCTTTTGCGAAGCACGGGAACGGCAGCGAC
GACACGCCATGCGCCTTGTGCAGGTCGAGGCCGATGGAGTGGGGCTGCGCTGACTCCTGGAGGTCGGCGTACCTCGAGCT
GCTGCTGGTTGCCGAGCTAGATTGCCGGCACGATGAATCTGGTCGTGGAAGTCGCGGACGCGGCGGAGCTATCCGCCAAG
GATGGCGCGGCGTCCTGCAACGCGTTTGTGGAGGTGGAGTTCAACGGGAAGGGCGAGCGCACCGCCACCCTCCTCCAACC
CAGAGAGCAACAGGTTCGCATCTCCGGCGACTCCGTCGCACGCTCCCCCGATGAAGCCGTCGTGGTACGCTTCCCGCTAG
ATAAAAGAGGGTTGTCCTCGCGCGTGTCCGGGGACATCAAGTTGGGACGGTGATCGCGTCGCGCAGGACCATGCACAAGT
AATAGTTCCTAATTTTTTTCCTCCCCTAATCAAAAGAATTTAAGCCTAACTATAGCTAGCTAGTAGTAGTACTCCATTAT
TGATCCCAATCAAGAGAGACCGGAGATCGAGCAGCAGTAACTCACATGATCTCAAGAGTCAAAAGGAGAAATCAAAAGAA
GGAGAAAATTAACTCCTGATCAAACGTATGCATCTTTGATTTTGCTCAGAGTCAGAGACTCAGACTAGTCACAGTGGGAG
TAACTTCAGTAGTAACATCGAGTCCAACTCACAAATTTGCTTACGTGGCAGTGAGTTAATGAGGAGAGAGGTAGTTGTAG
TAACTTAGCTAGTTACTGTAACATCACATGTCCCAATGCAATATGAGTCTATAACCTAATAAATGAAGCTTTGCATGTTA
CCACACTTATGTTACTACCCACTATGAAGGTAGTAACATAGTTTAGGAATATGTGTATGTTACTAGTGTATGTTACTCAC
TATTGTGGCTAGTCTCAGAGCCAGAGCGCGCCGGCGTCCTTGAGTATGGGGACCAGCTCGCTGGAGATGTGCACGGCCAT
GAGCCGGTCGAGCCCGCCGAGGAGCCGCCCACCCACGAACACGGCCGGCAGCGCGACGACGGCCTCGCCGCCGGCGTCCC
CGGTCACCGCCATGGCGAGCTCGGCCTCGTCGGCGACCTCGTGCATGGCGGGGTTCACCCCGAGCCCCTGCAGCAGCCGC
TTCACCACATGGCTGAGGCAGCACCCGCGCCTCCCCACCACTAGCACGGGGCTCTCCGCGACCGCCCGCCTCCCCGCTGT
CGCCCCTCGCCGCCGCGTCCATCGCCTCGGCGGCAACGCCGGGGTCGATGATGACTACAACCTCGTGGTCGGCACCGGCG
CCACCCAGCTCTTCTAGGCGGCCATGTAGTCCCTGCCTCCCGCCGGTGCCGAACAACCCGTCAGCGTCATCTCGTCGGCG
CCCTACTACTCGGTAATTAAGATCAAACGACATAACAAATGCAACTAGAATTTTCAATCACATTCACGGTCGTGAGTGAC
CACCGCCGTAGATCAGCCCACCGCCGTAGACAGTGGCGTCTCGCCGGAGCCCTACTACTCAATCAGCTAATCTACGGCGG
TGGCGTGCTAGTCGTATCCGCCGCAGACAAACCTGCTCCTCTCCGGGTTCTACTGGTGGTCCGGCGACACCAACGCCTTC
GACGGTCGGAATGGACGGAGCGGTTCCCCGGCGGCAGGGGCGCCAATCGATGCCACCATGACGGGGCGGCTCGATCCCTT
CTTCATTGCGCTCTTCCTCCCCGTGTATATGACGCTCGCCGGCTACCGCACATACTTCCTGGAGCTGGGCGTCCACGAGG
AGAAATGGCGCGCGCTGGAGCTATTCGTGGCCCGATGCATCGCCGGCAAGATGGTGGGTTGCAGCCCACAGTCACGGGGG
AAGGCCATCTTCGGGAGGAGATCACCGGCCATGGTGCGGTTGTACGCGATGTAGCGTCCGGCAGGGCGTGCCATGAAGGC
GATGAAGGAGGCGAGGATCTTGGCCGTGAATGCCGGCGACTTGGCCTCCGTGATGGAACGCCGCGGCAAAGCAGGCTTGG
AGGAACTAGGAGGTGACAGCGGTGATGAGGGATGTGGTGAGCGCGGTGCGACAGAGCTCGGAGTTGAGGAGGTCGAGCTC
GGGGAGCGCGTCGGCGATGACAAGAAAGGAGGAGACCGAGAGGCGGACGGCGAGCTCGGTGATGAGCGACGAGACGCGAA
GGTCGGCGGAAGGGTGGAACACCACCAACGTGATGGCGAGCGGCACGACGAAGCAAGCGAGGCCAACGGCGACGGCGCGG
CCACTGGTTCGGCAGATCTTTTAATAACTGGCAACTTTGCAAAAGACCCCCTGGTTCCCTCCATATTCGAGCGGCTGAGA
CGATGTGACAGTCAAAGCACACTTGGCAGCGGTTGACTCGGGCCAGATCAGCATGTATGTAGACCAAACCGTATAATGGA
TCGTAGATGACCTCTAGAACAAGTTTGATGACTGTATTGCGGGTATTTGTAACAACAGGGACTAAAGCTAACGCCAATAC
AAGTAAATGGACCTGTAGTGAATTTTTTTCTTTTTGGATTTTATCGGGGTCCCAAATTTAACACCCGGCCC----GCGAT
GCCATGCTCGGCGCGCGGCCGCAGCTAGCGAGAGAGCGCCCCGGCGCCGAGCGGGCGTTGATCCACTCAACTCAAACCTT
CTTCAAGTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCAGTGCCAGCTCCCAAGCCAAGCCAG--GACCA
CCCCGGACCCCGATGCCGATGCCGATGCGTCGCCCCCTCTCCCCTGCCTGCCCACCTGTCTAGGGATCCCGATGCGGCCT
A-------CCTGAGCCTGACACCCCGGCCCGGAGCCTCACACGCCCAGAACAGCAC----------CACGACGACCCAGT
CGTCCCGCCCCCGCCGGTATAAATCAAGCTCGACGCCCCCACAAGCTTCTCACCTCAATCAGCA------AAGCGACCTC
AGCAGCCATCCCCGAGCTCG--CTCCCAACACCGCACGAGCACCACATCCTTGGCGCCATTCGAGCCACCAAGTGTCAGC
TAAGCCCCCTGCGTTGCGCTGTGCTGCGATCGCGACGCTCTGCTCTGCGTGGCCTGTGAAATGTGCGGCATGCCGATCGC
CGGCTGCTTCTGCTTCGGCGGGAAAGGGAAGGCGGGCGGCGGTGCTGCCGCCAGGGCC------GCGCGCCCGCGCTACG
TGCCCAAGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTGGTCAGCTGCTACCGCCCCGCCAGGACCGGGCCTCTG
CCGCGCTGAGGCTCGGCTCGGCTCGCCCGCCGCCGCCGGCGTCCTTGTTCGGCAGCGCGCGGGGGGCTCGCGTCGGCCGG
AGACCGGGCATTCGC--------TCCGCCGGAGTCGACCAACCATTGTAGTAGTAGTAGCAGCTCAACTTTGCCAAGGCC
CTGTTTTTAGCGCGAGCTCCACATTTCCACAGGGTCTTGAC--------GTTGGATCTAGCAAACACAA-TAAGTGCAGC
C-TTTTCTTCTTCTTTTTGTTTGCCTCAAATGTCTGGTTTGAAATTTGAATAGGCACATTGCTTTGCATTTTG-------
-----------TGCTTTGAATTATTGCTACCTTGCACTCCTGAGAACCTTGTGAATTAATTCCTGAAAGCCACCGTGCAT
CACGAACTCTGAACTGAAGTCAGCTTCATCAGGTGTTGGATTACTTCAT----GAGAGAAGAAGGCACGAGAGATTTAAG
AACACCAATACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCAGTCAGCGGAGGGAATTGTTTGCATCGACGGGAC
AG-----TTGTCTCTCTCGACGCAGACAGGACTGCACAT-----GACGAAAAACAAATGACGGGCAAAGTCGTAG-----
GTCAGGGTCAGCGTTTTGACCTGAGTCTTGGCGT----CGGCCTTGGCTAGTTGCATTGGTGCCA-GATCTGTGATCGTC
CTGGCCGGCACTGCGGTGGCCGGATCAGATGAAAATTCAGCACTTGACAAATCTTGTCCCGTCGTCTCAAC---------
----AATCTTTGCTTCTCAAGTCTGAACATTGACCAGGCGGCATTCTTGC-----TAACTCGGTTGGTTCCACCTCAACC
TCATCGTA--CTACTCGAATAAAAGGAGGACCTTCTTTTCCAAACCAAAGCACAAGGACCTCCCAATGA-----------
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>chr6D_433
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-------------------------------------------------TAGTTGAGCTAACCAACTTTTCACCG----G
GGACAGCAAATCCATCACAGCCCAAG------------------------------------------------------
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----------------------------------------------------CAAAGTTAACACCCGGCCCCGCCGCCAT
GCCATGCTCGGCGCGCGGCCGCGGCTAGCGAGGGACTGCCCCGGCGCCGAGCGGGCGTTGATCCACTCAACCCAAACCTC
CCCCGTGTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCCGTGCCAGCTCCGGAGCGAGCCAGGGCGACGA
CCCCGGACCCCGATGCCGATGCCGATGC-----------------------CCACCTGTCCACGGATCCCGATGCGGCCT
-------------GCCTGACACCCCGGCCCAGAGCCTCACACGTCCAGAACACAAAAGAAAGGCAGCACGACGACCCAGT
CGTCCCGCCCCCGCCGGTATAAATAAAGCTCGACGCCCCCACAAGCTTCTCACCTCAATCAGCATTCAGCAAGCGACCTC
AGCAGCCATCCCAGACCTCCTCCTCCCG--ACCGCACGACCACCACATCCTTGGCGCCATTCGAGCCGCCG---------
---------------GCGCTGCGCCGCGATCGCTCTGCCCTGCTCTGCGTGGCCCGTGAAATGTGCGGCATGCCGATCGC
CGGCTGCTTC------GGTGGGAAAGGGAAGGTGGGCGGCGGTGCCGGCGCTGCGCCTGCGCCAGCGTGCCCGCGCTACG
TGCCCAGGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTGGTCAGCTGCTACCGCCCCGCCAGGACCGGGCCTCTG
CCGCGCTGAGGCTCGGCTCGCCCG--CCGCCGCCGCCGGCGTCCCTGGTCGGCAGC-----GGGGGCTCGCGTCAGCCGG
AGAGCGGGCATTCGCAGCGCTAGTCCGCCGGAGTCGACCAACCAGTGTAGTAGTAGCAGC---TCAACTTTGCCGAGGCC
CTGTTTTTAGCGCTAGCTCCACA-TTCCACAGGGTCTTGAAATTAGGATGTTCGATCTAGCAAACACAAATAAGTGCAGC
CTTTTTCTTCTTTTTTTTTTTTGCCCCAAATGTCTGATTTGAGTAGGCACAT------TTGCTCTGCATTTTGTTAGAAG
AAACCAACCACTGTTTTGAATTATTGCTATCTTGCCCTCCTGAGAACCTTGTGAATTAATTCCTGAAAGCCATCGTGCAT
CATGAACTCTCAACTGAAGTCAGCTTCATCAGGTGTTTGATCACTTCATTCATGAGAGAACAAGACACGAAAGATTGAAG
---------ACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCAGTCAGCGGAGGGAATTGTTTGCGTCGACGGGAC
AGGATGGCTGTCTCTCTCGACACAGACACGACTGCACGGGAGC-----AAAAACAAATGACCGGCAAAGTCGTAG-----
GTCAGGGTCAGCGTTTTGACCTGAATCTTGGCGTCGGCCGGCCTTGGCTAGTTGCATTGGTGGACGGATCCGTGATCGTC
CTGGCCCGCACTGCAGTGGCCGGATCAGATGAAAATTCAGCAGTTGGCAAATCTTGTCGCCCCAAAC-------------
-------CTTTGCTTCCGAAGCCTCAACATTGACCAGGCTGCATTTTTGCTACTGTAACTCGGTTGGTTCCAGCTCAACC
TCATCGTATACTACTCAAATAAGACCTTCTTTC-C--TTCCAAACCAAAGCACAAAGACCTCGCAATGAAATCGCCCCT-
GCTCCGTCGGTCAATCGATCAACAAAAGAACAACAAATA----CTACAGATAAAAGAACAGGA-----------------
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>SNPs
SSSSSSSS-----S--------S------------S----S--------------S------------------------
-----S--------S----S---S--S-S------------------------------------S-S------S-----
--SS-----------------SS----S-------SS-------------------------------S-----------
--S------------S-----S-----S-----S---------SSSSS----------S--S--S---S--SSSS--SS-
-S-----------------------------------S-S------------SS----S---------S----------S
-------------------S--S----S---SSS-SSSSSS-SS-SS-S-S-SSSS------------------------
-----------------------------------------------SS------------S-S----------SSSSS-
-S------------------S-----------------------------------------------------------
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-------------------------------------------------------------S-------------S----
--------------------------------------------S-----------------------------------
----S-S---------------------------------------------------S--S---SSS-S----------
---S-S-------------------S------------------------------------------------------
SSSSSSSS---------------------------------------S-------------S---SS-------------
-------------------------------SS-----------------------------------------------
--------------------------------S-----------S------S---------------S-------S-S--
------S------S----S-SSSS--------------------------------------------------------
------------------------------------------S-S---S-------------------------------
-------------------------------------------SS-----------------------------------
-------------------S--------------------------SS---------S----------------------
--------S----S----------------------------------------------------S-------------
-------------------------------------------------------------------------S------
------SS-SS---------------------------------------------------------------------
----------------------------------------S---------------------------------------
---------------------S----------------------------------S-----------------------
----------------------------------------------S---------------------------------
------S------------------------------S-S-SSS-------------------------------SSSSS
--------------------------------SSS-SSS--SSSSSSSSS--S------------------------S-S
S----S--------------------S--------S----------------------------------SSSSSSSSSS
SSSS-----S----------------------------------------------------------------------
-----S------S-------------S-------------S-------------------------------S-S----S
----------------S-SSSSS--------------SSSSSS----S-------S--S----SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_4236
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--------------------------------------------------------CCATTCGAGCCTCCAAGTGG----
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>reverse_5527
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------AGCAAGTATCTCCCCTCCCC------------------------------------------------------
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