Multiple sequence alignment - TraesCS6A01G298700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G298700 chr6A 100.000 2315 0 0 1 2315 531718468 531716154 0.000000e+00 4276.0
1 TraesCS6A01G298700 chr6A 94.859 389 17 1 26 414 531749368 531748983 2.540000e-169 604.0
2 TraesCS6A01G298700 chr6D 86.358 1510 87 36 218 1630 386520081 386518594 0.000000e+00 1537.0
3 TraesCS6A01G298700 chr6D 93.103 174 9 2 1592 1764 386518300 386518129 3.820000e-63 252.0
4 TraesCS6A01G298700 chr6D 93.413 167 8 1 28 194 386521525 386521362 6.390000e-61 244.0
5 TraesCS6A01G298700 chr6B 83.583 1267 74 55 604 1761 577461690 577460449 0.000000e+00 1064.0
6 TraesCS6A01G298700 chr6B 89.223 399 27 4 28 414 577470136 577469742 3.460000e-133 484.0
7 TraesCS6A01G298700 chr6B 89.623 318 15 5 1764 2072 577460412 577460104 2.790000e-104 388.0
8 TraesCS6A01G298700 chr6B 80.000 165 31 2 2115 2277 113630306 113630142 1.120000e-23 121.0
9 TraesCS6A01G298700 chr6B 84.127 126 16 3 2113 2235 113628133 113628257 4.040000e-23 119.0
10 TraesCS6A01G298700 chr3A 84.393 173 25 2 2113 2283 83301155 83301327 3.960000e-38 169.0
11 TraesCS6A01G298700 chr3A 83.237 173 27 2 2113 2283 83237982 83238154 8.560000e-35 158.0
12 TraesCS6A01G298700 chr2D 81.188 202 37 1 2115 2315 181208959 181209160 6.620000e-36 161.0
13 TraesCS6A01G298700 chr2D 79.902 204 32 6 2115 2313 394557327 394557128 8.620000e-30 141.0
14 TraesCS6A01G298700 chr2D 79.412 204 33 6 2115 2313 459317428 459317229 4.010000e-28 135.0
15 TraesCS6A01G298700 chr2B 85.833 120 13 3 2115 2231 781007213 781007331 8.680000e-25 124.0
16 TraesCS6A01G298700 chr2B 78.000 200 36 7 2119 2314 604324093 604324288 4.040000e-23 119.0
17 TraesCS6A01G298700 chr2B 97.222 36 1 0 1855 1890 625929304 625929339 6.910000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G298700 chr6A 531716154 531718468 2314 True 4276.000000 4276 100.000 1 2315 1 chr6A.!!$R1 2314
1 TraesCS6A01G298700 chr6D 386518129 386521525 3396 True 677.666667 1537 90.958 28 1764 3 chr6D.!!$R1 1736
2 TraesCS6A01G298700 chr6B 577460104 577461690 1586 True 726.000000 1064 86.603 604 2072 2 chr6B.!!$R3 1468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 1481 0.037303 CAGTCACCACTGGGCTGAAT 59.963 55.0 0.0 0.0 45.75 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 2842 0.533032 AGCGAACTTACAGGAGGAGC 59.467 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 0.469917 ACTTGCTGGTGTAGTGCAGT 59.530 50.000 0.00 0.00 38.01 4.40
119 120 3.988517 GGTGTAGTGCAGTAGTTTGACTC 59.011 47.826 0.18 0.00 0.00 3.36
123 124 2.029828 AGTGCAGTAGTTTGACTCGGAG 60.030 50.000 2.83 2.83 0.00 4.63
169 170 1.293924 CTGATGGCACCAATCGAGTC 58.706 55.000 0.00 0.00 0.00 3.36
209 1479 3.150949 CAGTCACCACTGGGCTGA 58.849 61.111 0.00 0.00 45.75 4.26
210 1480 1.451504 CAGTCACCACTGGGCTGAA 59.548 57.895 0.00 0.00 45.75 3.02
211 1481 0.037303 CAGTCACCACTGGGCTGAAT 59.963 55.000 0.00 0.00 45.75 2.57
212 1482 0.773644 AGTCACCACTGGGCTGAATT 59.226 50.000 0.00 0.00 37.90 2.17
213 1483 1.985159 AGTCACCACTGGGCTGAATTA 59.015 47.619 0.00 0.00 37.90 1.40
214 1484 2.375174 AGTCACCACTGGGCTGAATTAA 59.625 45.455 0.00 0.00 37.90 1.40
215 1485 2.749621 GTCACCACTGGGCTGAATTAAG 59.250 50.000 0.00 0.00 37.90 1.85
216 1486 2.642311 TCACCACTGGGCTGAATTAAGA 59.358 45.455 0.00 0.00 37.90 2.10
238 1508 7.184067 AGAGTTAAATTAACCATCTCGGAGT 57.816 36.000 11.83 0.00 39.47 3.85
244 1514 7.553881 AAATTAACCATCTCGGAGTGTAATG 57.446 36.000 4.69 1.42 38.63 1.90
257 1527 4.527564 GAGTGTAATGTAATCATTGCGCC 58.472 43.478 4.18 6.95 43.17 6.53
287 1557 0.249489 ACCTGTCTGCACGTTGAGAC 60.249 55.000 14.32 14.32 39.31 3.36
299 1569 3.579147 CGTTGAGACGCTGTAAACAAA 57.421 42.857 0.00 0.00 43.03 2.83
300 1570 3.277481 CGTTGAGACGCTGTAAACAAAC 58.723 45.455 0.00 0.00 43.03 2.93
301 1571 3.242155 CGTTGAGACGCTGTAAACAAACA 60.242 43.478 0.00 0.00 43.03 2.83
342 1612 3.667282 ACGTCGTGTCTCCCCGTG 61.667 66.667 0.00 0.00 0.00 4.94
348 1618 2.100631 GTGTCTCCCCGTGAATGCG 61.101 63.158 0.00 0.00 0.00 4.73
381 1651 2.029623 ACCAATCGTACGAGCTACCAT 58.970 47.619 23.89 1.37 0.00 3.55
490 1760 7.171337 CGAAAACCCTTGTCATTCAAATTTGAT 59.829 33.333 21.10 9.11 37.00 2.57
513 1797 3.508793 TGTAGGTTCTTACGAACTGGAGG 59.491 47.826 11.43 0.00 46.84 4.30
554 1838 1.227380 GCACTCCTCGCACATAGGG 60.227 63.158 0.00 0.00 34.66 3.53
572 1856 2.484928 GGGGTACGGACGCTAGGTC 61.485 68.421 15.21 0.00 45.31 3.85
573 1857 1.452833 GGGTACGGACGCTAGGTCT 60.453 63.158 7.75 0.00 45.35 3.85
595 1879 7.330208 GGTCTGTCTGGATTTGAATTGAATTTG 59.670 37.037 0.00 0.00 0.00 2.32
669 1954 1.884235 AACAGAGAAGAAACAGGCGG 58.116 50.000 0.00 0.00 0.00 6.13
690 1975 3.706373 GAGGAGCACGGGCAGGAA 61.706 66.667 14.57 0.00 44.61 3.36
696 1981 3.353836 CACGGGCAGGAACCAACG 61.354 66.667 0.00 0.00 0.00 4.10
740 2035 3.324207 AACAGCGAGTTTCCTTCCC 57.676 52.632 0.00 0.00 37.03 3.97
741 2036 0.250770 AACAGCGAGTTTCCTTCCCC 60.251 55.000 0.00 0.00 37.03 4.81
742 2037 1.128188 ACAGCGAGTTTCCTTCCCCT 61.128 55.000 0.00 0.00 0.00 4.79
896 2193 2.070783 TCGCCTTACTTTAAGCAACCG 58.929 47.619 0.00 0.00 34.46 4.44
955 2266 1.620819 TGACTTCCTCCTCTCACAAGC 59.379 52.381 0.00 0.00 0.00 4.01
995 2313 4.521062 GCTGACTCGCCTCGCCAT 62.521 66.667 0.00 0.00 0.00 4.40
997 2315 4.147449 TGACTCGCCTCGCCATGG 62.147 66.667 7.63 7.63 0.00 3.66
998 2316 3.838271 GACTCGCCTCGCCATGGA 61.838 66.667 18.40 0.00 0.00 3.41
999 2317 3.781770 GACTCGCCTCGCCATGGAG 62.782 68.421 18.40 13.80 0.00 3.86
1370 2737 3.112709 GTCGGCGCAAGTCTGGTC 61.113 66.667 10.83 0.00 42.28 4.02
1373 2740 2.032681 GGCGCAAGTCTGGTCCTT 59.967 61.111 10.83 0.00 40.30 3.36
1375 2742 2.383527 GCGCAAGTCTGGTCCTTCG 61.384 63.158 0.30 0.00 41.68 3.79
1456 2842 7.653713 AGCGAACATAGTAGGATTTGATTACTG 59.346 37.037 0.00 0.00 0.00 2.74
1459 2845 8.894768 AACATAGTAGGATTTGATTACTGCTC 57.105 34.615 0.00 0.00 0.00 4.26
1550 2944 4.687215 TGTCCTGCTCGCCTGCAC 62.687 66.667 0.00 0.00 38.12 4.57
1655 3227 1.335051 GCGGCCTCTTTTGTTTCTGTC 60.335 52.381 0.00 0.00 0.00 3.51
1719 3468 2.730090 GCACGCATCTTCAAGGAATGTG 60.730 50.000 0.00 0.00 0.00 3.21
1720 3469 2.485426 CACGCATCTTCAAGGAATGTGT 59.515 45.455 0.49 0.49 36.54 3.72
1762 3545 3.966979 TGGCATGTTCATGGAATGTACT 58.033 40.909 13.55 0.00 46.80 2.73
1775 3558 6.509418 TGGAATGTACTCTAATTTGCAACC 57.491 37.500 0.00 0.00 0.00 3.77
1777 3560 4.616181 ATGTACTCTAATTTGCAACCGC 57.384 40.909 0.00 0.00 39.24 5.68
1788 3571 1.242989 TGCAACCGCTAAATTCTGCA 58.757 45.000 0.00 0.00 39.64 4.41
1789 3572 1.199789 TGCAACCGCTAAATTCTGCAG 59.800 47.619 7.63 7.63 39.64 4.41
1790 3573 1.200020 GCAACCGCTAAATTCTGCAGT 59.800 47.619 14.67 0.00 34.30 4.40
1806 3589 3.000041 TGCAGTAGCGTGTTAGATTTGG 59.000 45.455 0.00 0.00 46.23 3.28
1816 3599 7.653647 AGCGTGTTAGATTTGGTAAATTTCAA 58.346 30.769 0.00 0.00 0.00 2.69
1825 3608 5.975410 TTGGTAAATTTCAAGCAAAACCG 57.025 34.783 0.00 0.00 28.27 4.44
1842 3625 6.201997 GCAAAACCGGTAAATTTTCAGACAAT 59.798 34.615 8.00 0.00 0.00 2.71
1843 3626 7.382759 GCAAAACCGGTAAATTTTCAGACAATA 59.617 33.333 8.00 0.00 0.00 1.90
1844 3627 9.250624 CAAAACCGGTAAATTTTCAGACAATAA 57.749 29.630 8.00 0.00 0.00 1.40
1845 3628 9.990360 AAAACCGGTAAATTTTCAGACAATAAT 57.010 25.926 8.00 0.00 0.00 1.28
1891 3674 2.095212 GCTAGTACTGCCCTTTGTTTGC 60.095 50.000 5.39 0.00 0.00 3.68
1910 3693 3.926616 TGCTGAGCCTAGAGTGTAAAAC 58.073 45.455 0.23 0.00 0.00 2.43
1911 3694 2.924290 GCTGAGCCTAGAGTGTAAAACG 59.076 50.000 0.00 0.00 0.00 3.60
1913 3696 3.159472 TGAGCCTAGAGTGTAAAACGGA 58.841 45.455 0.00 0.00 0.00 4.69
1915 3698 4.174762 GAGCCTAGAGTGTAAAACGGAAG 58.825 47.826 0.00 0.00 0.00 3.46
1916 3699 3.830755 AGCCTAGAGTGTAAAACGGAAGA 59.169 43.478 0.00 0.00 0.00 2.87
1917 3700 4.466726 AGCCTAGAGTGTAAAACGGAAGAT 59.533 41.667 0.00 0.00 0.00 2.40
1970 3754 1.812235 TCGCTCACATGCATTCTGTT 58.188 45.000 0.00 0.00 0.00 3.16
1976 3760 4.154737 GCTCACATGCATTCTGTTAGTTCA 59.845 41.667 0.00 0.00 0.00 3.18
1999 3783 7.254852 TCAGAACTGTTTGTGTCAATAAAACC 58.745 34.615 0.00 0.00 33.76 3.27
2000 3784 7.122055 TCAGAACTGTTTGTGTCAATAAAACCT 59.878 33.333 0.00 0.00 33.76 3.50
2001 3785 7.432252 CAGAACTGTTTGTGTCAATAAAACCTC 59.568 37.037 0.00 0.00 33.76 3.85
2002 3786 7.339466 AGAACTGTTTGTGTCAATAAAACCTCT 59.661 33.333 0.00 0.00 33.76 3.69
2062 3854 0.951040 CTTCCCAACGAGCACTGACC 60.951 60.000 0.00 0.00 0.00 4.02
2072 3864 2.978010 CACTGACCGGGTGTTGCC 60.978 66.667 3.30 0.00 0.00 4.52
2073 3865 4.619227 ACTGACCGGGTGTTGCCG 62.619 66.667 3.30 0.00 38.44 5.69
2091 3883 1.009829 CGGAAGGAAGTGCATACTGC 58.990 55.000 0.00 0.00 45.29 4.40
2110 3902 3.693300 GCACAGTTGCGATCAAATTTG 57.307 42.857 12.15 12.15 39.50 2.32
2111 3903 2.409378 GCACAGTTGCGATCAAATTTGG 59.591 45.455 17.90 3.60 39.50 3.28
2112 3904 3.856638 GCACAGTTGCGATCAAATTTGGA 60.857 43.478 17.90 5.66 39.50 3.53
2113 3905 4.487948 CACAGTTGCGATCAAATTTGGAT 58.512 39.130 17.90 10.02 33.37 3.41
2114 3906 4.325204 CACAGTTGCGATCAAATTTGGATG 59.675 41.667 17.90 8.83 33.37 3.51
2115 3907 4.218200 ACAGTTGCGATCAAATTTGGATGA 59.782 37.500 17.90 0.00 33.37 2.92
2116 3908 4.796830 CAGTTGCGATCAAATTTGGATGAG 59.203 41.667 17.90 6.94 33.37 2.90
2117 3909 4.107622 GTTGCGATCAAATTTGGATGAGG 58.892 43.478 17.90 3.82 33.37 3.86
2118 3910 3.355378 TGCGATCAAATTTGGATGAGGT 58.645 40.909 17.90 0.00 0.00 3.85
2119 3911 4.522114 TGCGATCAAATTTGGATGAGGTA 58.478 39.130 17.90 0.00 0.00 3.08
2120 3912 4.946772 TGCGATCAAATTTGGATGAGGTAA 59.053 37.500 17.90 0.00 0.00 2.85
2121 3913 5.593909 TGCGATCAAATTTGGATGAGGTAAT 59.406 36.000 17.90 0.87 0.00 1.89
2122 3914 6.770303 TGCGATCAAATTTGGATGAGGTAATA 59.230 34.615 17.90 0.00 0.00 0.98
2123 3915 7.448161 TGCGATCAAATTTGGATGAGGTAATAT 59.552 33.333 17.90 0.00 0.00 1.28
2124 3916 7.965107 GCGATCAAATTTGGATGAGGTAATATC 59.035 37.037 17.90 7.90 0.00 1.63
2125 3917 9.002600 CGATCAAATTTGGATGAGGTAATATCA 57.997 33.333 17.90 0.00 0.00 2.15
2127 3919 8.463930 TCAAATTTGGATGAGGTAATATCACC 57.536 34.615 17.90 0.00 39.02 4.02
2128 3920 7.228507 TCAAATTTGGATGAGGTAATATCACCG 59.771 37.037 17.90 0.00 43.84 4.94
2129 3921 4.617253 TTGGATGAGGTAATATCACCGG 57.383 45.455 0.00 0.00 43.84 5.28
2130 3922 3.851979 TGGATGAGGTAATATCACCGGA 58.148 45.455 9.46 0.00 43.84 5.14
2131 3923 4.228010 TGGATGAGGTAATATCACCGGAA 58.772 43.478 9.46 0.00 43.84 4.30
2132 3924 4.283467 TGGATGAGGTAATATCACCGGAAG 59.717 45.833 9.46 0.00 43.84 3.46
2133 3925 4.283722 GGATGAGGTAATATCACCGGAAGT 59.716 45.833 9.46 0.00 43.84 3.01
2134 3926 4.931661 TGAGGTAATATCACCGGAAGTC 57.068 45.455 9.46 0.00 43.84 3.01
2135 3927 4.283337 TGAGGTAATATCACCGGAAGTCA 58.717 43.478 9.46 0.00 43.84 3.41
2136 3928 4.899457 TGAGGTAATATCACCGGAAGTCAT 59.101 41.667 9.46 0.00 43.84 3.06
2137 3929 6.072649 TGAGGTAATATCACCGGAAGTCATA 58.927 40.000 9.46 0.00 43.84 2.15
2138 3930 6.208797 TGAGGTAATATCACCGGAAGTCATAG 59.791 42.308 9.46 0.00 43.84 2.23
2139 3931 6.312529 AGGTAATATCACCGGAAGTCATAGA 58.687 40.000 9.46 0.00 43.84 1.98
2140 3932 6.781014 AGGTAATATCACCGGAAGTCATAGAA 59.219 38.462 9.46 0.00 43.84 2.10
2141 3933 6.867293 GGTAATATCACCGGAAGTCATAGAAC 59.133 42.308 9.46 0.00 0.00 3.01
2142 3934 6.732896 AATATCACCGGAAGTCATAGAACT 57.267 37.500 9.46 0.00 0.00 3.01
2143 3935 6.732896 ATATCACCGGAAGTCATAGAACTT 57.267 37.500 9.46 0.00 42.10 2.66
2144 3936 7.834881 ATATCACCGGAAGTCATAGAACTTA 57.165 36.000 9.46 0.00 39.55 2.24
2145 3937 6.732896 ATCACCGGAAGTCATAGAACTTAT 57.267 37.500 9.46 0.00 39.55 1.73
2146 3938 5.902681 TCACCGGAAGTCATAGAACTTATG 58.097 41.667 9.46 0.00 39.55 1.90
2147 3939 5.050490 CACCGGAAGTCATAGAACTTATGG 58.950 45.833 9.46 0.00 39.55 2.74
2148 3940 4.715297 ACCGGAAGTCATAGAACTTATGGT 59.285 41.667 9.46 6.59 39.55 3.55
2149 3941 5.189145 ACCGGAAGTCATAGAACTTATGGTT 59.811 40.000 9.46 0.00 40.91 3.67
2150 3942 5.523916 CCGGAAGTCATAGAACTTATGGTTG 59.476 44.000 0.00 0.00 39.55 3.77
2151 3943 6.338146 CGGAAGTCATAGAACTTATGGTTGA 58.662 40.000 0.00 0.00 39.55 3.18
2152 3944 6.986817 CGGAAGTCATAGAACTTATGGTTGAT 59.013 38.462 0.00 0.00 39.55 2.57
2153 3945 7.042456 CGGAAGTCATAGAACTTATGGTTGATG 60.042 40.741 0.00 0.00 39.55 3.07
2154 3946 7.770897 GGAAGTCATAGAACTTATGGTTGATGT 59.229 37.037 0.00 0.00 39.55 3.06
2155 3947 9.167311 GAAGTCATAGAACTTATGGTTGATGTT 57.833 33.333 0.00 0.00 39.55 2.71
2156 3948 9.520515 AAGTCATAGAACTTATGGTTGATGTTT 57.479 29.630 0.00 0.00 37.71 2.83
2163 3955 9.349713 AGAACTTATGGTTGATGTTTAGTTTGA 57.650 29.630 0.00 0.00 38.41 2.69
2165 3957 9.912634 AACTTATGGTTGATGTTTAGTTTGATG 57.087 29.630 0.00 0.00 36.70 3.07
2166 3958 8.028938 ACTTATGGTTGATGTTTAGTTTGATGC 58.971 33.333 0.00 0.00 0.00 3.91
2167 3959 6.594788 ATGGTTGATGTTTAGTTTGATGCT 57.405 33.333 0.00 0.00 0.00 3.79
2168 3960 7.701539 ATGGTTGATGTTTAGTTTGATGCTA 57.298 32.000 0.00 0.00 0.00 3.49
2169 3961 7.144722 TGGTTGATGTTTAGTTTGATGCTAG 57.855 36.000 0.00 0.00 0.00 3.42
2170 3962 6.939730 TGGTTGATGTTTAGTTTGATGCTAGA 59.060 34.615 0.00 0.00 0.00 2.43
2171 3963 7.446931 TGGTTGATGTTTAGTTTGATGCTAGAA 59.553 33.333 0.00 0.00 0.00 2.10
2172 3964 7.750903 GGTTGATGTTTAGTTTGATGCTAGAAC 59.249 37.037 0.00 0.00 0.00 3.01
2173 3965 8.507249 GTTGATGTTTAGTTTGATGCTAGAACT 58.493 33.333 0.00 0.00 37.40 3.01
2174 3966 8.621532 TGATGTTTAGTTTGATGCTAGAACTT 57.378 30.769 0.00 0.00 35.43 2.66
2175 3967 9.066892 TGATGTTTAGTTTGATGCTAGAACTTT 57.933 29.630 0.00 0.00 35.43 2.66
2176 3968 9.334693 GATGTTTAGTTTGATGCTAGAACTTTG 57.665 33.333 0.00 0.00 35.43 2.77
2177 3969 8.445275 TGTTTAGTTTGATGCTAGAACTTTGA 57.555 30.769 0.00 0.00 35.43 2.69
2178 3970 8.898761 TGTTTAGTTTGATGCTAGAACTTTGAA 58.101 29.630 0.00 0.00 35.43 2.69
2179 3971 9.730420 GTTTAGTTTGATGCTAGAACTTTGAAA 57.270 29.630 0.00 0.00 35.43 2.69
2183 3975 8.230486 AGTTTGATGCTAGAACTTTGAAATACG 58.770 33.333 0.00 0.00 29.81 3.06
2184 3976 6.662414 TGATGCTAGAACTTTGAAATACGG 57.338 37.500 0.00 0.00 0.00 4.02
2185 3977 6.403049 TGATGCTAGAACTTTGAAATACGGA 58.597 36.000 0.00 0.00 0.00 4.69
2186 3978 7.047891 TGATGCTAGAACTTTGAAATACGGAT 58.952 34.615 0.00 0.00 0.00 4.18
2187 3979 7.552687 TGATGCTAGAACTTTGAAATACGGATT 59.447 33.333 0.00 0.00 0.00 3.01
2188 3980 7.681939 TGCTAGAACTTTGAAATACGGATTT 57.318 32.000 4.97 4.97 38.00 2.17
2189 3981 8.780846 TGCTAGAACTTTGAAATACGGATTTA 57.219 30.769 5.36 0.00 35.33 1.40
2190 3982 8.662141 TGCTAGAACTTTGAAATACGGATTTAC 58.338 33.333 5.36 0.80 35.33 2.01
2191 3983 8.662141 GCTAGAACTTTGAAATACGGATTTACA 58.338 33.333 5.36 3.51 35.33 2.41
2193 3985 8.617290 AGAACTTTGAAATACGGATTTACAGT 57.383 30.769 5.36 5.61 35.33 3.55
2194 3986 8.718734 AGAACTTTGAAATACGGATTTACAGTC 58.281 33.333 5.36 0.00 35.33 3.51
2195 3987 7.972832 ACTTTGAAATACGGATTTACAGTCA 57.027 32.000 5.36 0.00 35.33 3.41
2196 3988 7.803724 ACTTTGAAATACGGATTTACAGTCAC 58.196 34.615 5.36 0.00 35.33 3.67
2197 3989 7.660208 ACTTTGAAATACGGATTTACAGTCACT 59.340 33.333 5.36 0.00 35.33 3.41
2198 3990 7.972832 TTGAAATACGGATTTACAGTCACTT 57.027 32.000 5.36 0.00 35.33 3.16
2199 3991 9.491675 TTTGAAATACGGATTTACAGTCACTTA 57.508 29.630 5.36 0.00 35.33 2.24
2200 3992 9.491675 TTGAAATACGGATTTACAGTCACTTAA 57.508 29.630 5.36 0.00 35.33 1.85
2201 3993 8.928733 TGAAATACGGATTTACAGTCACTTAAC 58.071 33.333 5.36 0.00 35.33 2.01
2202 3994 9.148104 GAAATACGGATTTACAGTCACTTAACT 57.852 33.333 5.36 0.00 35.33 2.24
2203 3995 9.498176 AAATACGGATTTACAGTCACTTAACTT 57.502 29.630 3.04 0.00 33.33 2.66
2204 3996 6.780706 ACGGATTTACAGTCACTTAACTTG 57.219 37.500 0.00 0.00 0.00 3.16
2205 3997 6.518493 ACGGATTTACAGTCACTTAACTTGA 58.482 36.000 0.00 0.00 0.00 3.02
2206 3998 6.423001 ACGGATTTACAGTCACTTAACTTGAC 59.577 38.462 4.82 4.82 43.24 3.18
2207 3999 6.422701 CGGATTTACAGTCACTTAACTTGACA 59.577 38.462 12.79 0.00 45.00 3.58
2208 4000 7.117812 CGGATTTACAGTCACTTAACTTGACAT 59.882 37.037 12.79 5.40 45.00 3.06
2209 4001 8.443937 GGATTTACAGTCACTTAACTTGACATC 58.556 37.037 12.79 7.65 45.00 3.06
2210 4002 8.902540 ATTTACAGTCACTTAACTTGACATCA 57.097 30.769 12.79 0.00 45.00 3.07
2211 4003 7.709269 TTACAGTCACTTAACTTGACATCAC 57.291 36.000 12.79 0.00 45.00 3.06
2212 4004 5.670485 ACAGTCACTTAACTTGACATCACA 58.330 37.500 12.79 0.00 45.00 3.58
2213 4005 6.291377 ACAGTCACTTAACTTGACATCACAT 58.709 36.000 12.79 0.00 45.00 3.21
2214 4006 7.441836 ACAGTCACTTAACTTGACATCACATA 58.558 34.615 12.79 0.00 45.00 2.29
2215 4007 7.385205 ACAGTCACTTAACTTGACATCACATAC 59.615 37.037 12.79 0.00 45.00 2.39
2216 4008 7.384932 CAGTCACTTAACTTGACATCACATACA 59.615 37.037 12.79 0.00 45.00 2.29
2217 4009 7.931407 AGTCACTTAACTTGACATCACATACAA 59.069 33.333 12.79 0.00 45.00 2.41
2218 4010 8.556194 GTCACTTAACTTGACATCACATACAAA 58.444 33.333 7.36 0.00 42.58 2.83
2219 4011 9.283768 TCACTTAACTTGACATCACATACAAAT 57.716 29.630 0.00 0.00 0.00 2.32
2224 4016 8.621532 AACTTGACATCACATACAAATACAGT 57.378 30.769 0.00 0.00 0.00 3.55
2225 4017 8.256611 ACTTGACATCACATACAAATACAGTC 57.743 34.615 0.00 0.00 0.00 3.51
2226 4018 7.877612 ACTTGACATCACATACAAATACAGTCA 59.122 33.333 0.00 0.00 0.00 3.41
2227 4019 7.595311 TGACATCACATACAAATACAGTCAC 57.405 36.000 0.00 0.00 0.00 3.67
2228 4020 7.158021 TGACATCACATACAAATACAGTCACA 58.842 34.615 0.00 0.00 0.00 3.58
2229 4021 7.659390 TGACATCACATACAAATACAGTCACAA 59.341 33.333 0.00 0.00 0.00 3.33
2230 4022 8.389779 ACATCACATACAAATACAGTCACAAA 57.610 30.769 0.00 0.00 0.00 2.83
2231 4023 8.845227 ACATCACATACAAATACAGTCACAAAA 58.155 29.630 0.00 0.00 0.00 2.44
2232 4024 9.844790 CATCACATACAAATACAGTCACAAAAT 57.155 29.630 0.00 0.00 0.00 1.82
2235 4027 9.261318 CACATACAAATACAGTCACAAAATACG 57.739 33.333 0.00 0.00 0.00 3.06
2236 4028 7.960738 ACATACAAATACAGTCACAAAATACGC 59.039 33.333 0.00 0.00 0.00 4.42
2237 4029 6.307031 ACAAATACAGTCACAAAATACGCA 57.693 33.333 0.00 0.00 0.00 5.24
2238 4030 6.908825 ACAAATACAGTCACAAAATACGCAT 58.091 32.000 0.00 0.00 0.00 4.73
2239 4031 8.035165 ACAAATACAGTCACAAAATACGCATA 57.965 30.769 0.00 0.00 0.00 3.14
2240 4032 7.960738 ACAAATACAGTCACAAAATACGCATAC 59.039 33.333 0.00 0.00 0.00 2.39
2242 4034 4.239304 ACAGTCACAAAATACGCATACGA 58.761 39.130 0.00 0.00 43.93 3.43
2243 4035 4.687018 ACAGTCACAAAATACGCATACGAA 59.313 37.500 0.00 0.00 43.93 3.85
2244 4036 5.013236 CAGTCACAAAATACGCATACGAAC 58.987 41.667 0.00 0.00 43.93 3.95
2245 4037 4.927425 AGTCACAAAATACGCATACGAACT 59.073 37.500 0.00 0.00 43.93 3.01
2246 4038 5.407387 AGTCACAAAATACGCATACGAACTT 59.593 36.000 0.00 0.00 43.93 2.66
2247 4039 6.587226 AGTCACAAAATACGCATACGAACTTA 59.413 34.615 0.00 0.00 43.93 2.24
2248 4040 7.277098 AGTCACAAAATACGCATACGAACTTAT 59.723 33.333 0.00 0.00 43.93 1.73
2249 4041 7.578024 GTCACAAAATACGCATACGAACTTATC 59.422 37.037 0.00 0.00 43.93 1.75
2250 4042 7.275999 TCACAAAATACGCATACGAACTTATCA 59.724 33.333 0.00 0.00 43.93 2.15
2251 4043 7.579093 CACAAAATACGCATACGAACTTATCAG 59.421 37.037 0.00 0.00 43.93 2.90
2252 4044 6.764877 AAATACGCATACGAACTTATCAGG 57.235 37.500 0.00 0.00 43.93 3.86
2253 4045 3.093717 ACGCATACGAACTTATCAGGG 57.906 47.619 0.00 0.00 43.93 4.45
2254 4046 2.429610 ACGCATACGAACTTATCAGGGT 59.570 45.455 0.00 0.00 43.93 4.34
2255 4047 2.794910 CGCATACGAACTTATCAGGGTG 59.205 50.000 0.00 0.00 43.93 4.61
2256 4048 3.737047 CGCATACGAACTTATCAGGGTGT 60.737 47.826 0.00 0.00 43.93 4.16
2257 4049 4.498513 CGCATACGAACTTATCAGGGTGTA 60.499 45.833 0.00 0.00 43.93 2.90
2258 4050 5.539048 GCATACGAACTTATCAGGGTGTAT 58.461 41.667 0.00 0.00 0.00 2.29
2259 4051 5.405571 GCATACGAACTTATCAGGGTGTATG 59.594 44.000 0.00 5.02 40.33 2.39
2260 4052 4.402056 ACGAACTTATCAGGGTGTATGG 57.598 45.455 0.00 0.00 0.00 2.74
2261 4053 3.131396 CGAACTTATCAGGGTGTATGGC 58.869 50.000 0.00 0.00 0.00 4.40
2262 4054 3.477530 GAACTTATCAGGGTGTATGGCC 58.522 50.000 0.00 0.00 0.00 5.36
2263 4055 2.776665 ACTTATCAGGGTGTATGGCCT 58.223 47.619 3.32 0.00 0.00 5.19
2264 4056 2.706190 ACTTATCAGGGTGTATGGCCTC 59.294 50.000 3.32 0.00 0.00 4.70
2265 4057 2.487746 TATCAGGGTGTATGGCCTCA 57.512 50.000 3.32 0.00 0.00 3.86
2266 4058 0.839946 ATCAGGGTGTATGGCCTCAC 59.160 55.000 3.32 10.84 0.00 3.51
2272 4064 1.195115 GTGTATGGCCTCACCTCTCA 58.805 55.000 3.32 0.00 40.22 3.27
2273 4065 1.137872 GTGTATGGCCTCACCTCTCAG 59.862 57.143 3.32 0.00 40.22 3.35
2274 4066 1.273267 TGTATGGCCTCACCTCTCAGT 60.273 52.381 3.32 0.00 40.22 3.41
2275 4067 1.137872 GTATGGCCTCACCTCTCAGTG 59.862 57.143 3.32 0.00 40.22 3.66
2276 4068 0.252421 ATGGCCTCACCTCTCAGTGA 60.252 55.000 3.32 0.00 44.38 3.41
2283 4075 2.174360 TCACCTCTCAGTGAGTGATGG 58.826 52.381 21.08 18.47 41.78 3.51
2284 4076 0.901124 ACCTCTCAGTGAGTGATGGC 59.099 55.000 21.08 0.00 41.11 4.40
2285 4077 0.179116 CCTCTCAGTGAGTGATGGCG 60.179 60.000 21.08 2.99 41.11 5.69
2286 4078 0.805322 CTCTCAGTGAGTGATGGCGC 60.805 60.000 19.53 0.00 37.99 6.53
2287 4079 1.079612 CTCAGTGAGTGATGGCGCA 60.080 57.895 10.83 0.00 33.51 6.09
2288 4080 0.461516 CTCAGTGAGTGATGGCGCAT 60.462 55.000 10.83 0.00 33.51 4.73
2289 4081 0.741927 TCAGTGAGTGATGGCGCATG 60.742 55.000 10.83 0.00 0.00 4.06
2290 4082 0.741927 CAGTGAGTGATGGCGCATGA 60.742 55.000 10.83 0.00 0.00 3.07
2291 4083 0.742281 AGTGAGTGATGGCGCATGAC 60.742 55.000 10.83 5.50 0.00 3.06
2292 4084 1.450134 TGAGTGATGGCGCATGACC 60.450 57.895 10.83 0.00 28.48 4.02
2293 4085 2.512286 AGTGATGGCGCATGACCG 60.512 61.111 10.83 0.00 28.48 4.79
2294 4086 2.511373 GTGATGGCGCATGACCGA 60.511 61.111 10.83 0.00 0.00 4.69
2295 4087 2.511373 TGATGGCGCATGACCGAC 60.511 61.111 10.83 0.00 36.59 4.79
2296 4088 2.202932 GATGGCGCATGACCGACT 60.203 61.111 10.83 0.00 37.10 4.18
2297 4089 2.202932 ATGGCGCATGACCGACTC 60.203 61.111 10.83 0.00 37.10 3.36
2298 4090 2.906182 GATGGCGCATGACCGACTCA 62.906 60.000 10.83 0.00 37.10 3.41
2299 4091 2.202932 GGCGCATGACCGACTCAT 60.203 61.111 10.83 0.00 40.59 2.90
2300 4092 1.815421 GGCGCATGACCGACTCATT 60.815 57.895 10.83 0.00 37.53 2.57
2301 4093 1.369091 GGCGCATGACCGACTCATTT 61.369 55.000 10.83 0.00 37.53 2.32
2302 4094 0.447801 GCGCATGACCGACTCATTTT 59.552 50.000 0.30 0.00 37.53 1.82
2303 4095 1.135689 GCGCATGACCGACTCATTTTT 60.136 47.619 0.30 0.00 37.53 1.94
2304 4096 2.508867 CGCATGACCGACTCATTTTTG 58.491 47.619 0.00 0.00 37.53 2.44
2305 4097 2.253603 GCATGACCGACTCATTTTTGC 58.746 47.619 0.00 0.00 37.53 3.68
2306 4098 2.351641 GCATGACCGACTCATTTTTGCA 60.352 45.455 0.00 0.00 37.53 4.08
2307 4099 3.236816 CATGACCGACTCATTTTTGCAC 58.763 45.455 0.00 0.00 37.53 4.57
2308 4100 2.293170 TGACCGACTCATTTTTGCACA 58.707 42.857 0.00 0.00 0.00 4.57
2309 4101 2.685388 TGACCGACTCATTTTTGCACAA 59.315 40.909 0.00 0.00 0.00 3.33
2310 4102 3.129462 TGACCGACTCATTTTTGCACAAA 59.871 39.130 0.00 0.00 0.00 2.83
2311 4103 4.109050 GACCGACTCATTTTTGCACAAAA 58.891 39.130 1.52 4.47 38.40 2.44
2312 4104 3.862845 ACCGACTCATTTTTGCACAAAAC 59.137 39.130 8.01 0.00 39.70 2.43
2313 4105 3.862267 CCGACTCATTTTTGCACAAAACA 59.138 39.130 8.01 1.62 39.70 2.83
2314 4106 4.259770 CCGACTCATTTTTGCACAAAACAC 60.260 41.667 8.01 0.00 39.70 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.786425 ACTGAAGAAAAAGAGAGGCAAGT 58.214 39.130 0.00 0.00 0.00 3.16
47 48 5.764487 AACTGAAGAAAAAGAGAGGCAAG 57.236 39.130 0.00 0.00 0.00 4.01
48 49 5.679638 GCAAACTGAAGAAAAAGAGAGGCAA 60.680 40.000 0.00 0.00 0.00 4.52
102 103 1.961394 TCCGAGTCAAACTACTGCACT 59.039 47.619 0.00 0.00 0.00 4.40
109 110 0.388134 GTGCGCTCCGAGTCAAACTA 60.388 55.000 9.73 0.00 0.00 2.24
159 160 3.257561 CGCGCCAGACTCGATTGG 61.258 66.667 0.00 6.43 37.53 3.16
183 184 2.280797 TGGTGACTGCGCAGAACC 60.281 61.111 37.75 37.75 38.38 3.62
211 1481 9.595823 CTCCGAGATGGTTAATTTAACTCTTAA 57.404 33.333 16.64 4.73 38.68 1.85
212 1482 8.755977 ACTCCGAGATGGTTAATTTAACTCTTA 58.244 33.333 16.64 4.60 38.68 2.10
213 1483 7.549488 CACTCCGAGATGGTTAATTTAACTCTT 59.451 37.037 16.64 7.30 38.68 2.85
214 1484 7.042335 CACTCCGAGATGGTTAATTTAACTCT 58.958 38.462 16.64 12.93 38.68 3.24
215 1485 6.817140 ACACTCCGAGATGGTTAATTTAACTC 59.183 38.462 16.64 9.09 38.68 3.01
216 1486 6.708285 ACACTCCGAGATGGTTAATTTAACT 58.292 36.000 16.64 0.82 38.68 2.24
238 1508 3.944650 ACAGGCGCAATGATTACATTACA 59.055 39.130 17.58 0.00 43.76 2.41
244 1514 1.006832 ACGACAGGCGCAATGATTAC 58.993 50.000 17.58 6.11 46.04 1.89
257 1527 1.792949 GCAGACAGGTAAACACGACAG 59.207 52.381 0.00 0.00 0.00 3.51
287 1557 2.159366 TGTGGGTTGTTTGTTTACAGCG 60.159 45.455 0.00 0.00 30.90 5.18
288 1558 3.512033 TGTGGGTTGTTTGTTTACAGC 57.488 42.857 0.00 0.00 0.00 4.40
290 1560 5.046591 TCCATTTGTGGGTTGTTTGTTTACA 60.047 36.000 0.00 0.00 0.00 2.41
298 1568 1.419381 GGGTCCATTTGTGGGTTGTT 58.581 50.000 0.00 0.00 0.00 2.83
299 1569 0.471022 GGGGTCCATTTGTGGGTTGT 60.471 55.000 0.00 0.00 0.00 3.32
300 1570 0.178935 AGGGGTCCATTTGTGGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
301 1571 0.565674 AAGGGGTCCATTTGTGGGTT 59.434 50.000 0.00 0.00 0.00 4.11
318 1588 0.663568 GGAGACACGACGTGGTCAAG 60.664 60.000 29.86 6.07 37.94 3.02
342 1612 1.258197 GTCGTTAGCTTAGCCGCATTC 59.742 52.381 0.00 0.00 0.00 2.67
348 1618 1.859080 CGATTGGTCGTTAGCTTAGCC 59.141 52.381 0.00 0.00 42.78 3.93
375 1645 1.027357 GCTGCATTGGTGGATGGTAG 58.973 55.000 0.00 0.00 0.00 3.18
381 1651 0.035152 CTACTGGCTGCATTGGTGGA 60.035 55.000 0.50 0.00 0.00 4.02
405 1675 5.193679 AGCACTCTGTCAAAGTTAAGGTTT 58.806 37.500 0.00 0.00 0.00 3.27
513 1797 1.922570 CATTTGCAGGCATTCAGAGC 58.077 50.000 0.00 0.00 0.00 4.09
554 1838 2.440980 ACCTAGCGTCCGTACCCC 60.441 66.667 0.00 0.00 0.00 4.95
566 1850 6.409704 TCAATTCAAATCCAGACAGACCTAG 58.590 40.000 0.00 0.00 0.00 3.02
572 1856 6.091713 GGCAAATTCAATTCAAATCCAGACAG 59.908 38.462 0.00 0.00 0.00 3.51
573 1857 5.933463 GGCAAATTCAATTCAAATCCAGACA 59.067 36.000 0.00 0.00 0.00 3.41
574 1858 5.933463 TGGCAAATTCAATTCAAATCCAGAC 59.067 36.000 0.00 0.00 0.00 3.51
575 1859 6.111669 TGGCAAATTCAATTCAAATCCAGA 57.888 33.333 0.00 0.00 0.00 3.86
595 1879 3.423154 CTGCGACCTCCGTTTGGC 61.423 66.667 0.00 0.00 41.15 4.52
616 1900 2.967076 AACAGACACTGCCGCGTG 60.967 61.111 4.92 11.99 40.67 5.34
690 1975 4.265056 AAAGGAGGCGCCGTTGGT 62.265 61.111 23.20 1.65 43.43 3.67
736 2031 2.656069 GCGTGGCAGTAGAGGGGAA 61.656 63.158 0.00 0.00 0.00 3.97
737 2032 3.075005 GCGTGGCAGTAGAGGGGA 61.075 66.667 0.00 0.00 0.00 4.81
738 2033 3.390521 TGCGTGGCAGTAGAGGGG 61.391 66.667 0.00 0.00 33.32 4.79
739 2034 2.125512 GTGCGTGGCAGTAGAGGG 60.126 66.667 0.00 0.00 40.08 4.30
740 2035 2.507102 CGTGCGTGGCAGTAGAGG 60.507 66.667 0.00 0.00 40.08 3.69
741 2036 3.181967 GCGTGCGTGGCAGTAGAG 61.182 66.667 0.00 0.00 40.08 2.43
742 2037 3.984749 TGCGTGCGTGGCAGTAGA 61.985 61.111 0.00 0.00 40.08 2.59
783 2078 1.045911 CCTCTGAGCTCCCCCAGTAC 61.046 65.000 12.15 0.00 0.00 2.73
784 2079 1.221909 TCCTCTGAGCTCCCCCAGTA 61.222 60.000 12.15 0.00 0.00 2.74
785 2080 2.040278 CCTCTGAGCTCCCCCAGT 59.960 66.667 12.15 0.00 0.00 4.00
786 2081 1.761667 CTCCTCTGAGCTCCCCCAG 60.762 68.421 12.15 2.12 0.00 4.45
826 2121 0.388134 GGCGGCATTCATGATCATGC 60.388 55.000 27.68 19.77 44.39 4.06
827 2122 0.109919 CGGCGGCATTCATGATCATG 60.110 55.000 26.79 26.79 40.09 3.07
828 2123 1.239296 CCGGCGGCATTCATGATCAT 61.239 55.000 15.42 1.18 0.00 2.45
829 2124 1.893335 CCGGCGGCATTCATGATCA 60.893 57.895 15.42 0.00 0.00 2.92
830 2125 2.949106 CCGGCGGCATTCATGATC 59.051 61.111 15.42 0.00 0.00 2.92
874 2171 2.159747 GGTTGCTTAAAGTAAGGCGACG 60.160 50.000 0.00 0.00 36.31 5.12
875 2172 2.159747 CGGTTGCTTAAAGTAAGGCGAC 60.160 50.000 0.00 0.00 36.31 5.19
899 2196 4.575973 GGCGAGGATGGCATGCCT 62.576 66.667 35.53 21.86 43.90 4.75
955 2266 4.507021 CGAGATGAGATTGACAGATTGTGG 59.493 45.833 0.00 0.00 0.00 4.17
995 2313 1.910722 GCTGCCTTCTCCATCTCCA 59.089 57.895 0.00 0.00 0.00 3.86
997 2315 1.227497 CCGCTGCCTTCTCCATCTC 60.227 63.158 0.00 0.00 0.00 2.75
998 2316 2.906458 CCGCTGCCTTCTCCATCT 59.094 61.111 0.00 0.00 0.00 2.90
999 2317 2.899339 GCCGCTGCCTTCTCCATC 60.899 66.667 0.00 0.00 0.00 3.51
1045 2397 1.900016 ACTCCACCTCGTGCACGTA 60.900 57.895 35.74 22.18 40.80 3.57
1184 2536 3.959991 AAGCCTCCCTTCTTCGCGC 62.960 63.158 0.00 0.00 0.00 6.86
1224 2576 2.666190 CATATGGAGGCCGCGTGG 60.666 66.667 11.67 11.67 38.77 4.94
1360 2727 3.403038 ACAAATCGAAGGACCAGACTTG 58.597 45.455 0.00 0.00 0.00 3.16
1370 2737 6.148480 AGAGAAATTGACAGACAAATCGAAGG 59.852 38.462 0.00 0.00 42.03 3.46
1373 2740 5.106948 GCAGAGAAATTGACAGACAAATCGA 60.107 40.000 0.00 0.00 42.03 3.59
1375 2742 5.084722 CGCAGAGAAATTGACAGACAAATC 58.915 41.667 0.00 0.00 42.03 2.17
1403 2770 2.398588 TCCAGCCTATAAGTCCCACTG 58.601 52.381 0.00 0.00 0.00 3.66
1456 2842 0.533032 AGCGAACTTACAGGAGGAGC 59.467 55.000 0.00 0.00 0.00 4.70
1459 2845 1.546476 AGTGAGCGAACTTACAGGAGG 59.454 52.381 0.00 0.00 34.91 4.30
1578 2992 3.124636 CGCATTTCTAAGTACCACACACC 59.875 47.826 0.00 0.00 0.00 4.16
1579 2993 3.991773 TCGCATTTCTAAGTACCACACAC 59.008 43.478 0.00 0.00 0.00 3.82
1581 2995 4.091509 CAGTCGCATTTCTAAGTACCACAC 59.908 45.833 0.00 0.00 0.00 3.82
1584 2998 4.794278 TCAGTCGCATTTCTAAGTACCA 57.206 40.909 0.00 0.00 0.00 3.25
1632 3204 2.095718 CAGAAACAAAAGAGGCCGCTAC 60.096 50.000 10.31 0.00 0.00 3.58
1699 3448 2.485426 ACACATTCCTTGAAGATGCGTG 59.515 45.455 0.00 0.00 0.00 5.34
1719 3468 6.021596 CCAACAACAGCGTGATTCTAATTAC 58.978 40.000 0.00 0.00 0.00 1.89
1720 3469 5.391523 GCCAACAACAGCGTGATTCTAATTA 60.392 40.000 0.00 0.00 0.00 1.40
1762 3545 6.321717 CAGAATTTAGCGGTTGCAAATTAGA 58.678 36.000 0.00 0.00 46.23 2.10
1777 3560 4.928661 AACACGCTACTGCAGAATTTAG 57.071 40.909 23.35 12.63 39.64 1.85
1788 3571 7.916914 AATTTACCAAATCTAACACGCTACT 57.083 32.000 0.00 0.00 0.00 2.57
1789 3572 8.231837 TGAAATTTACCAAATCTAACACGCTAC 58.768 33.333 0.00 0.00 0.00 3.58
1790 3573 8.325421 TGAAATTTACCAAATCTAACACGCTA 57.675 30.769 0.00 0.00 0.00 4.26
1806 3589 7.466193 TTTACCGGTTTTGCTTGAAATTTAC 57.534 32.000 15.04 0.00 0.00 2.01
1816 3599 5.163499 TGTCTGAAAATTTACCGGTTTTGCT 60.163 36.000 15.04 0.00 0.00 3.91
1891 3674 3.192844 TCCGTTTTACACTCTAGGCTCAG 59.807 47.826 0.00 0.00 0.00 3.35
1910 3693 4.024556 GCAGATCCACAACAATATCTTCCG 60.025 45.833 0.00 0.00 0.00 4.30
1911 3694 4.276926 GGCAGATCCACAACAATATCTTCC 59.723 45.833 0.00 0.00 34.01 3.46
1913 3696 3.879295 CGGCAGATCCACAACAATATCTT 59.121 43.478 0.00 0.00 34.01 2.40
1915 3698 2.031682 GCGGCAGATCCACAACAATATC 60.032 50.000 0.00 0.00 34.01 1.63
1916 3699 1.949525 GCGGCAGATCCACAACAATAT 59.050 47.619 0.00 0.00 34.01 1.28
1917 3700 1.339535 TGCGGCAGATCCACAACAATA 60.340 47.619 0.00 0.00 34.01 1.90
1970 3754 8.725405 TTATTGACACAAACAGTTCTGAACTA 57.275 30.769 21.65 3.98 40.46 2.24
1976 3760 7.339466 AGAGGTTTTATTGACACAAACAGTTCT 59.661 33.333 6.47 4.23 32.92 3.01
1999 3783 3.319137 TCATTGAAGTCCGTGGAAGAG 57.681 47.619 0.00 0.00 0.00 2.85
2000 3784 3.071023 AGTTCATTGAAGTCCGTGGAAGA 59.929 43.478 0.00 0.00 0.00 2.87
2001 3785 3.403038 AGTTCATTGAAGTCCGTGGAAG 58.597 45.455 0.00 0.00 0.00 3.46
2002 3786 3.485463 AGTTCATTGAAGTCCGTGGAA 57.515 42.857 0.00 0.00 0.00 3.53
2091 3883 3.899734 TCCAAATTTGATCGCAACTGTG 58.100 40.909 19.86 0.00 32.79 3.66
2092 3884 4.218200 TCATCCAAATTTGATCGCAACTGT 59.782 37.500 19.86 0.00 32.79 3.55
2093 3885 4.735985 TCATCCAAATTTGATCGCAACTG 58.264 39.130 19.86 0.00 32.79 3.16
2094 3886 4.142315 CCTCATCCAAATTTGATCGCAACT 60.142 41.667 19.86 0.00 32.79 3.16
2095 3887 4.107622 CCTCATCCAAATTTGATCGCAAC 58.892 43.478 19.86 0.00 32.79 4.17
2096 3888 3.763360 ACCTCATCCAAATTTGATCGCAA 59.237 39.130 19.86 0.00 0.00 4.85
2097 3889 3.355378 ACCTCATCCAAATTTGATCGCA 58.645 40.909 19.86 0.00 0.00 5.10
2098 3890 5.499139 TTACCTCATCCAAATTTGATCGC 57.501 39.130 19.86 0.00 0.00 4.58
2099 3891 9.002600 TGATATTACCTCATCCAAATTTGATCG 57.997 33.333 19.86 7.01 0.00 3.69
2101 3893 9.082313 GGTGATATTACCTCATCCAAATTTGAT 57.918 33.333 19.86 8.30 37.74 2.57
2102 3894 7.228507 CGGTGATATTACCTCATCCAAATTTGA 59.771 37.037 19.86 6.29 38.62 2.69
2103 3895 7.362662 CGGTGATATTACCTCATCCAAATTTG 58.637 38.462 14.25 11.40 38.62 2.32
2104 3896 6.490040 CCGGTGATATTACCTCATCCAAATTT 59.510 38.462 14.25 0.00 38.62 1.82
2105 3897 6.003950 CCGGTGATATTACCTCATCCAAATT 58.996 40.000 14.25 0.00 38.62 1.82
2106 3898 5.309543 TCCGGTGATATTACCTCATCCAAAT 59.690 40.000 14.25 0.00 38.62 2.32
2107 3899 4.656575 TCCGGTGATATTACCTCATCCAAA 59.343 41.667 14.25 0.00 38.62 3.28
2108 3900 4.228010 TCCGGTGATATTACCTCATCCAA 58.772 43.478 14.25 0.00 38.62 3.53
2109 3901 3.851979 TCCGGTGATATTACCTCATCCA 58.148 45.455 14.25 0.00 38.62 3.41
2110 3902 4.283722 ACTTCCGGTGATATTACCTCATCC 59.716 45.833 14.25 0.00 38.62 3.51
2111 3903 5.010719 TGACTTCCGGTGATATTACCTCATC 59.989 44.000 14.25 5.91 38.62 2.92
2112 3904 4.899457 TGACTTCCGGTGATATTACCTCAT 59.101 41.667 14.25 0.00 38.62 2.90
2113 3905 4.283337 TGACTTCCGGTGATATTACCTCA 58.717 43.478 14.25 8.02 38.62 3.86
2114 3906 4.931661 TGACTTCCGGTGATATTACCTC 57.068 45.455 14.25 5.67 38.62 3.85
2115 3907 6.312529 TCTATGACTTCCGGTGATATTACCT 58.687 40.000 14.25 0.00 38.62 3.08
2116 3908 6.585695 TCTATGACTTCCGGTGATATTACC 57.414 41.667 6.60 6.60 37.37 2.85
2117 3909 7.659186 AGTTCTATGACTTCCGGTGATATTAC 58.341 38.462 0.00 0.00 0.00 1.89
2118 3910 7.834881 AGTTCTATGACTTCCGGTGATATTA 57.165 36.000 0.00 0.00 0.00 0.98
2119 3911 6.732896 AGTTCTATGACTTCCGGTGATATT 57.267 37.500 0.00 0.00 0.00 1.28
2120 3912 6.732896 AAGTTCTATGACTTCCGGTGATAT 57.267 37.500 0.00 0.00 34.94 1.63
2121 3913 7.255836 CCATAAGTTCTATGACTTCCGGTGATA 60.256 40.741 0.00 0.00 40.24 2.15
2122 3914 6.463049 CCATAAGTTCTATGACTTCCGGTGAT 60.463 42.308 0.00 0.00 40.24 3.06
2123 3915 5.163447 CCATAAGTTCTATGACTTCCGGTGA 60.163 44.000 0.00 0.00 40.24 4.02
2124 3916 5.050490 CCATAAGTTCTATGACTTCCGGTG 58.950 45.833 0.00 0.00 40.24 4.94
2125 3917 4.715297 ACCATAAGTTCTATGACTTCCGGT 59.285 41.667 0.00 5.62 40.24 5.28
2126 3918 5.277857 ACCATAAGTTCTATGACTTCCGG 57.722 43.478 0.00 0.00 40.24 5.14
2127 3919 6.338146 TCAACCATAAGTTCTATGACTTCCG 58.662 40.000 0.00 0.00 40.24 4.30
2128 3920 7.770897 ACATCAACCATAAGTTCTATGACTTCC 59.229 37.037 0.00 0.00 40.24 3.46
2129 3921 8.723942 ACATCAACCATAAGTTCTATGACTTC 57.276 34.615 0.00 0.00 40.24 3.01
2130 3922 9.520515 AAACATCAACCATAAGTTCTATGACTT 57.479 29.630 0.00 0.00 42.27 3.01
2137 3929 9.349713 TCAAACTAAACATCAACCATAAGTTCT 57.650 29.630 0.00 0.00 36.18 3.01
2139 3931 9.912634 CATCAAACTAAACATCAACCATAAGTT 57.087 29.630 0.00 0.00 40.16 2.66
2140 3932 8.028938 GCATCAAACTAAACATCAACCATAAGT 58.971 33.333 0.00 0.00 0.00 2.24
2141 3933 8.246180 AGCATCAAACTAAACATCAACCATAAG 58.754 33.333 0.00 0.00 0.00 1.73
2142 3934 8.121305 AGCATCAAACTAAACATCAACCATAA 57.879 30.769 0.00 0.00 0.00 1.90
2143 3935 7.701539 AGCATCAAACTAAACATCAACCATA 57.298 32.000 0.00 0.00 0.00 2.74
2144 3936 6.594788 AGCATCAAACTAAACATCAACCAT 57.405 33.333 0.00 0.00 0.00 3.55
2145 3937 6.939730 TCTAGCATCAAACTAAACATCAACCA 59.060 34.615 0.00 0.00 0.00 3.67
2146 3938 7.377766 TCTAGCATCAAACTAAACATCAACC 57.622 36.000 0.00 0.00 0.00 3.77
2147 3939 8.507249 AGTTCTAGCATCAAACTAAACATCAAC 58.493 33.333 0.00 0.00 31.68 3.18
2148 3940 8.621532 AGTTCTAGCATCAAACTAAACATCAA 57.378 30.769 0.00 0.00 31.68 2.57
2149 3941 8.621532 AAGTTCTAGCATCAAACTAAACATCA 57.378 30.769 0.00 0.00 33.08 3.07
2150 3942 9.334693 CAAAGTTCTAGCATCAAACTAAACATC 57.665 33.333 0.00 0.00 33.08 3.06
2151 3943 9.066892 TCAAAGTTCTAGCATCAAACTAAACAT 57.933 29.630 0.00 0.00 33.08 2.71
2152 3944 8.445275 TCAAAGTTCTAGCATCAAACTAAACA 57.555 30.769 0.00 0.00 33.08 2.83
2153 3945 9.730420 TTTCAAAGTTCTAGCATCAAACTAAAC 57.270 29.630 0.00 0.00 33.08 2.01
2157 3949 8.230486 CGTATTTCAAAGTTCTAGCATCAAACT 58.770 33.333 0.00 0.00 34.81 2.66
2158 3950 7.481798 CCGTATTTCAAAGTTCTAGCATCAAAC 59.518 37.037 0.00 0.00 0.00 2.93
2159 3951 7.389330 TCCGTATTTCAAAGTTCTAGCATCAAA 59.611 33.333 0.00 0.00 0.00 2.69
2160 3952 6.876789 TCCGTATTTCAAAGTTCTAGCATCAA 59.123 34.615 0.00 0.00 0.00 2.57
2161 3953 6.403049 TCCGTATTTCAAAGTTCTAGCATCA 58.597 36.000 0.00 0.00 0.00 3.07
2162 3954 6.903883 TCCGTATTTCAAAGTTCTAGCATC 57.096 37.500 0.00 0.00 0.00 3.91
2163 3955 7.865706 AATCCGTATTTCAAAGTTCTAGCAT 57.134 32.000 0.00 0.00 0.00 3.79
2164 3956 7.681939 AAATCCGTATTTCAAAGTTCTAGCA 57.318 32.000 0.00 0.00 28.88 3.49
2165 3957 8.662141 TGTAAATCCGTATTTCAAAGTTCTAGC 58.338 33.333 0.00 0.00 36.67 3.42
2167 3959 9.715121 ACTGTAAATCCGTATTTCAAAGTTCTA 57.285 29.630 0.00 0.00 36.67 2.10
2168 3960 8.617290 ACTGTAAATCCGTATTTCAAAGTTCT 57.383 30.769 0.00 0.00 36.67 3.01
2169 3961 8.500773 TGACTGTAAATCCGTATTTCAAAGTTC 58.499 33.333 0.00 0.00 36.67 3.01
2170 3962 8.287503 GTGACTGTAAATCCGTATTTCAAAGTT 58.712 33.333 0.00 0.00 36.67 2.66
2171 3963 7.660208 AGTGACTGTAAATCCGTATTTCAAAGT 59.340 33.333 0.00 0.00 36.67 2.66
2172 3964 8.029642 AGTGACTGTAAATCCGTATTTCAAAG 57.970 34.615 0.00 0.00 36.67 2.77
2173 3965 7.972832 AGTGACTGTAAATCCGTATTTCAAA 57.027 32.000 0.00 0.00 36.67 2.69
2174 3966 7.972832 AAGTGACTGTAAATCCGTATTTCAA 57.027 32.000 0.00 0.00 36.67 2.69
2175 3967 8.928733 GTTAAGTGACTGTAAATCCGTATTTCA 58.071 33.333 0.00 0.00 36.67 2.69
2176 3968 9.148104 AGTTAAGTGACTGTAAATCCGTATTTC 57.852 33.333 0.00 0.00 36.67 2.17
2177 3969 9.498176 AAGTTAAGTGACTGTAAATCCGTATTT 57.502 29.630 0.00 0.00 38.80 1.40
2178 3970 8.932791 CAAGTTAAGTGACTGTAAATCCGTATT 58.067 33.333 0.00 0.00 0.00 1.89
2179 3971 8.308931 TCAAGTTAAGTGACTGTAAATCCGTAT 58.691 33.333 0.00 0.00 0.00 3.06
2180 3972 7.596248 GTCAAGTTAAGTGACTGTAAATCCGTA 59.404 37.037 10.62 0.00 41.80 4.02
2181 3973 6.423001 GTCAAGTTAAGTGACTGTAAATCCGT 59.577 38.462 10.62 0.00 41.80 4.69
2182 3974 6.422701 TGTCAAGTTAAGTGACTGTAAATCCG 59.577 38.462 16.37 0.00 44.70 4.18
2183 3975 7.724305 TGTCAAGTTAAGTGACTGTAAATCC 57.276 36.000 16.37 0.00 44.70 3.01
2184 3976 8.988934 TGATGTCAAGTTAAGTGACTGTAAATC 58.011 33.333 16.37 11.97 44.70 2.17
2185 3977 8.774586 GTGATGTCAAGTTAAGTGACTGTAAAT 58.225 33.333 16.37 5.28 44.70 1.40
2186 3978 7.766738 TGTGATGTCAAGTTAAGTGACTGTAAA 59.233 33.333 16.37 1.51 44.70 2.01
2187 3979 7.269316 TGTGATGTCAAGTTAAGTGACTGTAA 58.731 34.615 16.37 1.79 44.70 2.41
2188 3980 6.811954 TGTGATGTCAAGTTAAGTGACTGTA 58.188 36.000 16.37 2.07 44.70 2.74
2189 3981 5.670485 TGTGATGTCAAGTTAAGTGACTGT 58.330 37.500 16.37 8.29 44.70 3.55
2190 3982 6.791887 ATGTGATGTCAAGTTAAGTGACTG 57.208 37.500 16.37 0.00 44.70 3.51
2191 3983 7.441836 TGTATGTGATGTCAAGTTAAGTGACT 58.558 34.615 16.37 6.07 44.70 3.41
2192 3984 7.652300 TGTATGTGATGTCAAGTTAAGTGAC 57.348 36.000 10.88 10.88 44.67 3.67
2193 3985 8.669946 TTTGTATGTGATGTCAAGTTAAGTGA 57.330 30.769 0.00 0.00 0.00 3.41
2198 3990 9.719355 ACTGTATTTGTATGTGATGTCAAGTTA 57.281 29.630 0.00 0.00 0.00 2.24
2199 3991 8.621532 ACTGTATTTGTATGTGATGTCAAGTT 57.378 30.769 0.00 0.00 0.00 2.66
2200 3992 7.877612 TGACTGTATTTGTATGTGATGTCAAGT 59.122 33.333 0.00 0.00 0.00 3.16
2201 3993 8.171196 GTGACTGTATTTGTATGTGATGTCAAG 58.829 37.037 0.00 0.00 33.47 3.02
2202 3994 7.659390 TGTGACTGTATTTGTATGTGATGTCAA 59.341 33.333 0.00 0.00 33.47 3.18
2203 3995 7.158021 TGTGACTGTATTTGTATGTGATGTCA 58.842 34.615 0.00 0.00 0.00 3.58
2204 3996 7.595311 TGTGACTGTATTTGTATGTGATGTC 57.405 36.000 0.00 0.00 0.00 3.06
2205 3997 7.977789 TTGTGACTGTATTTGTATGTGATGT 57.022 32.000 0.00 0.00 0.00 3.06
2206 3998 9.844790 ATTTTGTGACTGTATTTGTATGTGATG 57.155 29.630 0.00 0.00 0.00 3.07
2209 4001 9.261318 CGTATTTTGTGACTGTATTTGTATGTG 57.739 33.333 0.00 0.00 0.00 3.21
2210 4002 7.960738 GCGTATTTTGTGACTGTATTTGTATGT 59.039 33.333 0.00 0.00 0.00 2.29
2211 4003 7.960195 TGCGTATTTTGTGACTGTATTTGTATG 59.040 33.333 0.00 0.00 0.00 2.39
2212 4004 8.035165 TGCGTATTTTGTGACTGTATTTGTAT 57.965 30.769 0.00 0.00 0.00 2.29
2213 4005 7.422878 TGCGTATTTTGTGACTGTATTTGTA 57.577 32.000 0.00 0.00 0.00 2.41
2214 4006 6.307031 TGCGTATTTTGTGACTGTATTTGT 57.693 33.333 0.00 0.00 0.00 2.83
2215 4007 7.161900 CGTATGCGTATTTTGTGACTGTATTTG 59.838 37.037 0.00 0.00 0.00 2.32
2216 4008 7.063662 TCGTATGCGTATTTTGTGACTGTATTT 59.936 33.333 2.37 0.00 39.49 1.40
2217 4009 6.532302 TCGTATGCGTATTTTGTGACTGTATT 59.468 34.615 2.37 0.00 39.49 1.89
2218 4010 6.037726 TCGTATGCGTATTTTGTGACTGTAT 58.962 36.000 2.37 0.00 39.49 2.29
2219 4011 5.400703 TCGTATGCGTATTTTGTGACTGTA 58.599 37.500 2.37 0.00 39.49 2.74
2220 4012 4.239304 TCGTATGCGTATTTTGTGACTGT 58.761 39.130 2.37 0.00 39.49 3.55
2221 4013 4.833469 TCGTATGCGTATTTTGTGACTG 57.167 40.909 2.37 0.00 39.49 3.51
2222 4014 4.927425 AGTTCGTATGCGTATTTTGTGACT 59.073 37.500 2.37 0.00 39.49 3.41
2223 4015 5.199424 AGTTCGTATGCGTATTTTGTGAC 57.801 39.130 2.37 0.00 39.49 3.67
2224 4016 5.849357 AAGTTCGTATGCGTATTTTGTGA 57.151 34.783 2.37 0.00 39.49 3.58
2225 4017 7.395645 TGATAAGTTCGTATGCGTATTTTGTG 58.604 34.615 2.37 0.00 39.49 3.33
2226 4018 7.254319 CCTGATAAGTTCGTATGCGTATTTTGT 60.254 37.037 2.37 0.00 39.49 2.83
2227 4019 7.063456 CCTGATAAGTTCGTATGCGTATTTTG 58.937 38.462 2.37 0.00 39.49 2.44
2228 4020 6.202188 CCCTGATAAGTTCGTATGCGTATTTT 59.798 38.462 2.37 0.00 39.49 1.82
2229 4021 5.694910 CCCTGATAAGTTCGTATGCGTATTT 59.305 40.000 2.37 0.00 39.49 1.40
2230 4022 5.221382 ACCCTGATAAGTTCGTATGCGTATT 60.221 40.000 2.37 0.00 39.49 1.89
2231 4023 4.280174 ACCCTGATAAGTTCGTATGCGTAT 59.720 41.667 2.37 0.00 39.49 3.06
2232 4024 3.633525 ACCCTGATAAGTTCGTATGCGTA 59.366 43.478 2.37 0.00 39.49 4.42
2233 4025 2.429610 ACCCTGATAAGTTCGTATGCGT 59.570 45.455 2.37 0.00 39.49 5.24
2234 4026 2.794910 CACCCTGATAAGTTCGTATGCG 59.205 50.000 0.00 0.00 39.92 4.73
2235 4027 3.793559 ACACCCTGATAAGTTCGTATGC 58.206 45.455 0.00 0.00 0.00 3.14
2236 4028 5.926542 CCATACACCCTGATAAGTTCGTATG 59.073 44.000 0.00 0.00 36.38 2.39
2237 4029 5.510861 GCCATACACCCTGATAAGTTCGTAT 60.511 44.000 0.00 0.00 0.00 3.06
2238 4030 4.202182 GCCATACACCCTGATAAGTTCGTA 60.202 45.833 0.00 0.00 0.00 3.43
2239 4031 3.431766 GCCATACACCCTGATAAGTTCGT 60.432 47.826 0.00 0.00 0.00 3.85
2240 4032 3.131396 GCCATACACCCTGATAAGTTCG 58.869 50.000 0.00 0.00 0.00 3.95
2241 4033 3.136626 AGGCCATACACCCTGATAAGTTC 59.863 47.826 5.01 0.00 0.00 3.01
2242 4034 3.123273 AGGCCATACACCCTGATAAGTT 58.877 45.455 5.01 0.00 0.00 2.66
2243 4035 2.706190 GAGGCCATACACCCTGATAAGT 59.294 50.000 5.01 0.00 0.00 2.24
2244 4036 2.705658 TGAGGCCATACACCCTGATAAG 59.294 50.000 5.01 0.00 0.00 1.73
2245 4037 2.438021 GTGAGGCCATACACCCTGATAA 59.562 50.000 5.01 0.00 0.00 1.75
2246 4038 2.047061 GTGAGGCCATACACCCTGATA 58.953 52.381 5.01 0.00 0.00 2.15
2247 4039 0.839946 GTGAGGCCATACACCCTGAT 59.160 55.000 5.01 0.00 0.00 2.90
2248 4040 2.296920 GTGAGGCCATACACCCTGA 58.703 57.895 5.01 0.00 0.00 3.86
2249 4041 4.963878 GTGAGGCCATACACCCTG 57.036 61.111 5.01 0.00 0.00 4.45
2253 4045 1.137872 CTGAGAGGTGAGGCCATACAC 59.862 57.143 5.01 12.28 40.61 2.90
2254 4046 1.273267 ACTGAGAGGTGAGGCCATACA 60.273 52.381 5.01 0.00 40.61 2.29
2255 4047 1.137872 CACTGAGAGGTGAGGCCATAC 59.862 57.143 5.01 2.61 39.34 2.39
2256 4048 1.007118 TCACTGAGAGGTGAGGCCATA 59.993 52.381 5.01 0.00 40.72 2.74
2257 4049 0.252421 TCACTGAGAGGTGAGGCCAT 60.252 55.000 5.01 0.00 40.72 4.40
2258 4050 1.156095 TCACTGAGAGGTGAGGCCA 59.844 57.895 5.01 0.00 40.72 5.36
2259 4051 4.120244 TCACTGAGAGGTGAGGCC 57.880 61.111 0.00 0.00 40.72 5.19
2268 4060 1.216444 GCGCCATCACTCACTGAGA 59.784 57.895 13.25 0.00 33.32 3.27
2269 4061 0.461516 ATGCGCCATCACTCACTGAG 60.462 55.000 4.18 4.36 35.52 3.35
2270 4062 0.741927 CATGCGCCATCACTCACTGA 60.742 55.000 4.18 0.00 0.00 3.41
2271 4063 0.741927 TCATGCGCCATCACTCACTG 60.742 55.000 4.18 0.00 0.00 3.66
2272 4064 0.742281 GTCATGCGCCATCACTCACT 60.742 55.000 4.18 0.00 0.00 3.41
2273 4065 1.709147 GGTCATGCGCCATCACTCAC 61.709 60.000 4.18 0.00 0.00 3.51
2274 4066 1.450134 GGTCATGCGCCATCACTCA 60.450 57.895 4.18 0.00 0.00 3.41
2275 4067 2.528743 CGGTCATGCGCCATCACTC 61.529 63.158 4.18 0.00 0.00 3.51
2276 4068 2.512286 CGGTCATGCGCCATCACT 60.512 61.111 4.18 0.00 0.00 3.41
2277 4069 2.511373 TCGGTCATGCGCCATCAC 60.511 61.111 4.18 0.00 0.00 3.06
2278 4070 2.511373 GTCGGTCATGCGCCATCA 60.511 61.111 4.18 0.00 0.00 3.07
2279 4071 2.202932 AGTCGGTCATGCGCCATC 60.203 61.111 4.18 0.00 0.00 3.51
2280 4072 2.202932 GAGTCGGTCATGCGCCAT 60.203 61.111 4.18 0.00 0.00 4.40
2281 4073 2.520465 AATGAGTCGGTCATGCGCCA 62.520 55.000 4.18 0.00 45.89 5.69
2282 4074 1.369091 AAATGAGTCGGTCATGCGCC 61.369 55.000 4.18 0.00 45.89 6.53
2283 4075 0.447801 AAAATGAGTCGGTCATGCGC 59.552 50.000 0.00 0.00 45.89 6.09
2284 4076 2.508867 CAAAAATGAGTCGGTCATGCG 58.491 47.619 2.41 0.00 45.89 4.73
2285 4077 2.253603 GCAAAAATGAGTCGGTCATGC 58.746 47.619 2.41 0.45 45.89 4.06
2286 4078 3.236816 GTGCAAAAATGAGTCGGTCATG 58.763 45.455 0.00 0.00 45.89 3.07
2288 4080 2.293170 TGTGCAAAAATGAGTCGGTCA 58.707 42.857 0.00 0.00 40.38 4.02
2289 4081 3.347958 TTGTGCAAAAATGAGTCGGTC 57.652 42.857 0.00 0.00 0.00 4.79
2290 4082 3.791973 TTTGTGCAAAAATGAGTCGGT 57.208 38.095 0.00 0.00 0.00 4.69
2291 4083 3.862267 TGTTTTGTGCAAAAATGAGTCGG 59.138 39.130 2.11 0.00 41.37 4.79
2292 4084 4.810125 GTGTTTTGTGCAAAAATGAGTCG 58.190 39.130 2.11 0.00 41.37 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.