>input_sequence_84113
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------------------------------------------------------------------------------AT
GGAGAA---------GGCAGCGGCGAAGACGGCGCA------------------------GCCGACGACGCTGCTGTACG
TGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGGCAGGGAGACCGTTGGCGCCGGCGCCCGCGCGGAC
GCGCGCCGCCGCCGGAAGAGGGCCGAGGCCGATGCGGCCAGCAGCCCCGAGGCGCGCGCGAAGAAGGGAGGCTTCCTGGC
CGAGCTCCTCGGGAACCACGCGGCCTCCATATGCGGCGACGGT------------GCCGTGGTCAGCGCGCGCCGCCGCC
GCGGCCGCAGCGGCTTCCGGGAGGTCGATAAGGTCTAG------------------------------------------
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>chr6A_1_TraesCS6A01G298700
TCAAGCACCAGTGAGGTATTTACCTTTTTTTTAATACTGTACAACTACTTGCCTCTCTTTTTCTTCAGTTTGCGAGAATA
CTCCACAACCACTTGCTGGTGTAGTGCAGTAGTTTGACTCGGAGCGCACACGGCGACGATGGCGCGAGAGCTGATGGCAC
CAATCGAGTCTGGCGCGCCGGCCGGTTCTGCGCAGT--------------------------------------------
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-------------------------CACCACTGGGCTGAATTAAGAGTTAAATTAACCATCTCGGAGTGTAATGTAATCA
TTGCGCCTGTCGTGTTTACCTGTCTGCACGTTGAGACGCTGTAAACAAACAACCCACAAATGGACCCCTTGACCACGTCG
TGTCTCCCCGTGAATGCGGCTAAGCTAACGACCAATCGTACGAGCTACCATCCACCAATGCAGCCAGTAGCAACAAACCT
TAACTTTGACAGAGTGCTTCCCATAACTTATCCAAACTGATGGTTGCGATCCACGAAAACCCTTGTCATTCAAATTTGAT
TGTAGGTTCT--------------TACGAACTGGAGGCTCTGAATGCCTGCAAATGCTGGCACTCCTCGCACATAGGGGG
GTACGGACGCTAGGTCTGTCTGGATTTGAATTGAATTTGCCAAACGGAGGTCGCAGCTGCACGCGGCAGTGTCTGTTGCA
AC-TTGCAACAAGAAACAGAGAAGAAACAGGCGGTGCGAGGAGCACGGGCAGGAACCAACGG---CGCCTCCTTTGCCGG
TGTAACCAAAACAGCGAGTTTC-------CTTCCCCTCTACTGCCACGCACGCACGACCCGCGGGAACCATAACTACGTA
CTGGGGGAGCTCAGAGGAGTTGACCACGCGTCCTCGCGCGGCATGAT--CATGAATGCCGCCGGCCCCACGCCGTCAGCC
TCTGCGCCCCCGTCGCCTTACTTTAAGCAACCGGCAGGCATGCCATCCTCGCCTCCTCTCCTCCACCGACTTGACTTC--
------------CTCCTCTCACAAGCCACAATCT-------GTCAATCTCATCTCGCTGACTCGCCTCGCCATGGAG-AT
GGAGAA---------GGCAGCGGCGAAGACGGCGCA------------------------GCCGACGACGCTGCTGTACG
TGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGGCAGGGAGACCGTTGGCGCCGGCGCCCGCGCGGAC
GCGCGCCGCCGCCGGAAGAGGGCCGAGGCCGATGCGGCCAGCAGCCCCGAGGCGCGCGCGAAGAAGGGAGGCTTCCTGGC
CGAGCTCCTCGGGAACCACGCGGCCTCCATATGCGGCGACGGT------------GCCGTGGTCAGCGCGCGCCGCCGCC
GCGGCCGCAGCGGCTTCCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGTACGGTGTGCGTTTGACAC---GGTATCG
TCGGCGCAAGTCTGGTCCTTCGATTTGTCTGTCAATTTCTCTGCGTAGCCAGTGGGACTTATAGGCTGGAATTGCCAGCG
AAC-------------------ATAGTAGGATTTGATTACTGCTCCTCCTGTAA-----GTTCGCTCACTTTCATCCTGC
ACTTTTCCTGTTA---TCCAACATGTAAATACGAACGTGGAATTTGTGTCCTGCTCGCCTGCACTGTCTATTTTTTCAGC
CTC--------------------TTTTTTTTGGTGTGTGGTACTTAGAAATGCGACTGAAATTTAATAAAATTT------
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------------------------------------------------------------------------CAGACAAA
TCAGTAGCGGCCTCTTTTGTTTCTGTCTCT--------------------------------------------------
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----------------------------------------------GCAC-GAGTTGCCTGCCCGATAGCAACGTGGTGC
GCTGTCGCACGCATCTTCAAGGAATGTGTAATTAGAATCACGCTGTTGTTGGCATGTTCATGGAATGT------------
----------------------ACTCTAATTTGCAACCGCTAAATTCTGCAGTAGCGTGTTAGATTTGGTAAATTTCAAG
CAAAACCGGTAAATTTTCAGACAATAATAAAAAAAATACCTCTGCTGATGCTGCTAGTACTGCCCTTTGTTTGCTGAGCC
TAGAGTGTAAAACGGAAGAT-ATTGTTGTGGATCTGCCGCAGTTGTTGCTGTGATCGCTCACATGCATTCTGTTAGTTCA
GAACTGTTTGTGTCAATAAAACCTCTTCCACGGACTTCAATGAACTTGCAAAACAAATACACTGGA--------CTTCCC
AACGAGCACTGACCGGGTGTTGCCGGAAGGAAGTGCATACTGCACAGTTGCGATCAAATTTGGATGAGGTAATATCACCG
GAAGTCATAGAACTTATGGTTGATGTTTAGTTTGATGCTAGAACTTTGAAATACGGATTTACAGTCACTTAACTTGACAT
CACATACAAATACAGTCACAAAATACGCATACGAACTTATCAGGGTGTATGGCCTCACCTCTCAGTGAGTGATGGCGCAT
GACCGACTCATTTTTGCACAAAACAC
>chr6D_28
---------------------------TTTTTAATACTGTACAACT---TGCCTCTCTTTTTCTTCAGTTTGCGAGAATA
CTCCACAACCACTTGCTGGTGTGGTGCAGCAGTTTGACTTGGACCGCACACGGCGACGATGGCGCGAGAGCTGATGGCAT
CAATCGAGTTTGGCGCGCCGGCCAGTTCTACGCATGAGTTATTTATCCCAAAACCACCACGTTATGGGCTAGGGTAACAG
ATCGGTATCACATTTGTTTTGAGGCAGGGCATAAAAAACCATCAACAATGAGGCTAATCTGTAACGCGGAGCACTGATGC
TCAGATTTGATCGAGAAAACAGCGAAACTGACAAGTTAGGCCCACCTATCACGCTGATGTGGCGTGCTTGTGTGGACAAT
ATGCTGAGTTGGAGGGGTGTCCCACATGTCAGCCTCATATCTTGTTTTCCTTATTTTCTTCTTCTTCCTCCTCATCTTTA
TCTCTCTCTCTCCCCATCTTATCCCACCAGGGTCGCCATCGCCGACGACCCGAGGCCCTCGCGCACCGGCTCATCGAGGA
GCTCCGCCTGGGCCATCGTAGGCCAAGGCAGCCCGCCACCCTTATCCTCCCGAAGCTCTCCAGACGGCGTCGCCCCGAGC
TGCTCCGCCAGCCGCCGCACGAGCCCACGGCCGCCGCACAGACCACCCCTCGTCTCGCCATTGCTCCGGTTGTGCGCCGC
CAACGTGTTTGCCGCGCGCCTCCTCAACCGCAGAAGAACACCATGGCTCCGCTCGAGCTACTCCCTACTGCGATTGCATC
TGCGCGTGCGTGCCATGGCCGACGACCTCGGACGTGAGCGGGACGAGCGGCTGCCGAATCTCGCCGACGCGTCTGGATGC
GTGCATGACTCGCGGCGGCTAGGCGTGCGGGCTACAGGGCGAGGCGGTCAGTGGCTAGCTCGAGCAGGGGCTCGGCTGCC
ATGGCCACGGTGTCCATGGAGCTCTCGGCTCGCACGAACGCAGATGACTCGGGCATCCATGCCGACGGGAGCAGCATCGG
CCTTCGAGGACTCACGGCGCCCCCCCCACCACCACCACCACCACCACGGTGCTCGCCGCTGAATCGCCGGTGCCTCTGGT
CGCTGGAGTCCGGCTGCCCACAAGCTGCTCGATGTAATGCCCCATAGAAAGGCATATAGGAAGAAGATGATCATGTAGTC
ATTGACATGCGGGGTCCGCATATCATTTGCCAACTCAGCTGTTTACTGTTTTTTTCTGTGCTTGGTCTTTGCCACGTCAG
CCTGGCCGGTGGGTCCGATCTGTCGGTTTCGTTGTTTTCCCGAGTAAATGAGACAATCAGTGCTCCGCGTTATAGATTAG
CCTCATTGTTGGTGGTTTTTTGTGCTCTGTCTCAAATCTGATACCGATCTGTTACCATAGCCCATAATGTGGTGGTTTTG
GGTAAATAACTCTCTATGCAGCCACCACCACTGG------------GTTAAATTAACCATCTCGGAGCGTAATCTAATCA
TTGCGCGTGTCGTGTTTACCTGTCTGCACGTTGAGAGCCCGTAAACA----ACCCACAAATGGACCCTTTGATCACGTCG
TGTCTCCCCGTAAATGCAGCTAAGCTAACGACCAATCGTACGAGTTACCAGCCACCAATGCAGCCAGTAGCAACTAACCT
TAACTTTGACAGAGTGCTTCCCATAACTTATCCAAACTGATGGTTGCGATCCACGAAAACCCTTGTCATTCAAATTTGAA
TGTAGGTTCTGCTTGGATATAGGATACGAACTGGAGACTCTGAATGCCTGCAAATGCTGGCACTCCTCGCACATAGG-GG
GTACGGACGTTAGGT----CTGGATTTGAATTGAATTTACCAAACGGAGGTCGCAGCTGTACGCGGCAGTGTCTATTGCA
AC-TTGCAACAAGAAACAGAGAAGAAACAGGCGATGCGAGGAGCACGGGCAGGAGCCAACTA---CGCCTCCTTTGCCGG
TGTAACTAAAACAGCGCATTTC-------C-------CTACTGCCACGCACGCACGACCCGCGGGAACCATAACTAG---
-TGGGGGAGCTCAGAGGGGTTGACCACGCGTCCTCACGTACTCGCGCGGCATGAATGCCGCCGGCCCCACGCCGTCAGCC
TCTGCGCCCCA-TCGCCTTACTTTAAGCAACCAGCGGGCCTGCCATCCTCGCCTCCTCTCCTCCACCGACTTGACTTCTT
CTCCTCCTCCTCCTCCTCTCACAAGTCACAACTCACAACCCGTCAATCTCATCTCACTGACTCGCCTGTCCAATCTCCAT
GGAGAAGGTTGCCGTGGCAGCGGCGAAGACGGCGCAC---CCGCCGCCGTCGCCGGGGAAGCCGACGACGCTGCTGGACG
TGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGTCAGGGAGACCGTTGGCGCGGGCGCCCGCGCGGAC
GCGCGCCGCCGCCGGAAGAGGGCCGAGGCGGGGGTTTCCAGCAGCCCCGAGGCGCACGCGAAGAAGGGAGGCTTCCTGGC
CGAGCTCCTCGGGAAGCACGCGGCCTCCATATGCGGCGACGGT------------GCCGTGGTCAGCGGGCGCCGGCGCC
GCGGCCGGAGCGGCTTCCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGTACGGTGTACGTATGGCAAGTAGGTATCG
TCGGCGTAAGTCTGGTACTGCAATTTGTCTGTCAATTTCTCTGCGTAGCGAGTGGGGCTTGTAGGCTGGAATTGCCAGCG
AAC-------------------ATAGTAGGATTTGATTACTACTACTCCTGTAAGAAAGGTTCGCTCACTTTTATCCTGC
ACTTTTCCTGTTATTATCCAACATGTAAATACGAACGTGGAATTTGTGTCCTGCTCGCCTGCGGTGCCTATTTTTGCTTC
CGATTTTGCTGATCAGCTGCGTG----TTTTTTTCTGAGTTACTTCGAAATGCGACTGAAATTTAATAAAATTTTCAGAC
AAATTTCTGTTTCTGCACGATTTGCCTGCCCGATAGTAATGCGACTGAAATTTAATAAAATTTTCAGACAAATCAATAGC
GGCCTCTTTTGTTTCTGTTTCTCCACGAGTTGCCTGCCCGATAGTAATGCGACTGAAATTTAATAAAATTTTCAGACAAA
TCAATAGCGGCCTCTTTTGTTTCTGTTTCTCCACGAGTTGCCTGCCCGATAGCAATGCGATTGAAATTTAATAAAATTTT
CAGACAAATCAATAGCGGCCTCTTTTGTTTCTTTTTCTGCACGAGTTGCTTGCCCGATAGCAATGCGACTGAAATTTAAT
AAATTTTTAAGACAAATCAATAGCGGCTTCTTTTGTTTCTGTTTCTGCAC-GAGTTGCCTGCCCGATAGCAACGTGGTGC
GCTGTCGTACGCATCTTCAAGGAATGT--AATTAGAATCACGCTGTTGTTGGCATGTTCATGAAATGCACTC--------
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>chr6B_604
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----------------------------------------------GAGGTCGCAACTGTATGCGGCAGTCGGGCAGTGT
CTATTGCAACAAGAAACAGAGAAGAAACAGGCGA-----GGAGCACGGGCAGGAGCCAACCGCATCGCCTCCTTTGCCGG
CGTAACCAAAACAGCGTGTTTCCATTCCCC-------CTACTGCCACGCACGCACGACCCGCGGGAACCATAACTAC---
-TGGGGGTGCTCAGAGGAGTTGACCACGCGAACTCGCGTACTCGCGCGGCATCAATGCCGCCGGCCCCACGCCGTCAGCC
TCTGCGCCCCA-TCACCTTACTTTAAGCAACCAGCGGGCATGCCATCCTCGCCTCCTCTCCTCCACCGACTTGACTTCT-
-----CCTCCTCCTCCTCTCACAAGTCACAATCT-------GTTAATCTCATCTCGCTGACTCGCCTCGCCTCG--CCAT
GGAGAAGGTGGCCGTGGCAGCGGCGAAGACGGCGCACCCGCCGCCGCCGTCGCCGGGGAAGCCGACGACGCTGCTGGACG
TGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGTCAGGGAGACCGTTGGA------GCCGGCGCGGAC
GCGCGCCGCCGCAGGAAGAGGGCCGAGGCCAAGGCGGC---CAGCCCCGAGGCGCACGCGAAGAAGGGAGGCTTCCTGGC
CGAGCTCCTCGGGAAGCACGCGGCCTCCATATGCGGCGACGGTGCCGTTTCCGGCGCCGTGCTCAGCGCGCGCCGCGGCC
GCGGCAGGAGCGGCTTTCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGCACGGTGTGCGTGTGACAC---GGTATCG
TCGGCGTAAGTCTGGTTCTGCAATTTGTGTGTCAATTTCTCTGCGTATCGAGTGGGACTTGTAGGCTGGAATTGCCAGTA
GTTGGCTTGCAGCGAACATAGTATAGTAGGATTTGATTACTTGTAATCCTGTAAGAAAGGTTCGCTCACTTTCATCCTGC
ACTTTTCCTGTTAT---CCAACATGTAAATACGAACACGGAATTTGTGTCCTGCTCGCCTTCAGTCTCTATTTTTTCTTC
CGATTTTGCTCATCTGCGTGGGTTTTTTTTTTTTTTGCGTTACTTCGAAATGCGACTGAAATTTAATG------------
-------------------------------------------------------TAAAATTTTCAGACAAATCAATAGC
GGCCTCTT------------------------------------------------------------------------
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---------------------------------TGTTTCTGTTCCTGCACTGAGTTGCCTGCCCGATAGCAACGTGGTGC
GCTGTCGTACGCATCTTCAAGGAATGT--AATTAGAATCACACTGTTGTTGGTATGTTCATAGAATATATCCCCTCCGTC
CCATAATGTAAGACATTTTCTGACACTAATTTGCAACTGGTAAATTCTGC---AGCGTGTTAGATTTGATAAATTTCAGG
CAAAATCAGTAAATTTTCAGACAAG-----AAAAAATACCTCTGCTGATGCTGCTAGTACTGCCCTTTGTTTGTTGAGCC
TAGAGTGTAAAATCGGAAGAGATTGTTGTGGATCTGCCGCAGTTGTTGCTGTGATCGCTCACATGCATTCTGTGAGTTCG
GAACTGTTTGTGTCAATAAAACGGG-TCCACGGACTTCAATGAACTTGCAAAACAAATACACTGGACTACTGGACTTCCC
AACGAGCACTGACTGGGTGTTGC---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------SSS-------------------------------
----------------------S------S---------S---S-----------------------------------S
---------S-------------S-----S----SS--------------------------------------------
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----------------------------------SSSSSSSSSSSS---------------------S-----S------
------S-----------------------------SS-S-------SSSS----------------S----S-------
-----------S-----S--------------------------S-----S-----------------------S-----
-------------------------------------------------------------------------------S
------------------------------------S----------------------------------------S--
---------S-----SSSS-------------------S--------------------S--------------S-----
---------------------------------S--------------------S-----S-------------------
----------------S-------------SSSSSSS----------------------------------------SSS
S-------------------------------------SSSSSSSSS---------------------------------
----------SS--------------------S--S--------------------------------------------
-------------------------S----------------------------------------------S-SSS---
----------------------------------------------------------------------------S---
---------------------------------------------S------------------S---------------
--------------------------------S----------------------S------------------------
---------------S----------------------------------------------------------------
-------S-------------------------------------------------------S----------------
------S---------S--S-S---------------------------S----------S-------------------
-----------------------------------------S--S-----------------------------------
---------------------------------------------------------------S-------------SS-
-SS----------------------------SS-S--S-S-----S----------------------------------
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---S----------------------S-----------------------------------------------------
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-------S-------------------SS---------------------------------------------------
------------------------S------------S-S----------SSS---------------S---------S-
-----S-S----------------SSSSSS-------------------------------------------S------
------------SS-S-SSS-----------------------------------------------------S-----S
----------------------SSSS------------------------------------------------------
-------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1481
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---------------------CAGTCACCACTGGGCTGAAT---------------------------------------
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>reverse_2842
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-----------------------------------------GCTCCTCCTGTAAGTTCGCT-------------------
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