Multiple sequence alignment - TraesCS6A01G292500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G292500 chr6A 100.000 2480 0 0 1 2480 524330960 524333439 0.000000e+00 4580.0
1 TraesCS6A01G292500 chr6D 87.913 1332 103 35 447 1745 382550286 382551592 0.000000e+00 1515.0
2 TraesCS6A01G292500 chr6D 89.234 548 37 13 1738 2275 382551634 382552169 0.000000e+00 665.0
3 TraesCS6A01G292500 chr6D 90.667 225 15 2 2261 2480 382552218 382552441 6.710000e-76 294.0
4 TraesCS6A01G292500 chr6B 86.686 1397 104 47 403 1745 572090217 572091585 0.000000e+00 1474.0
5 TraesCS6A01G292500 chr6B 90.608 543 32 10 1738 2273 572091624 572092154 0.000000e+00 702.0
6 TraesCS6A01G292500 chr5A 97.927 386 8 0 1 386 647804632 647804247 0.000000e+00 669.0
7 TraesCS6A01G292500 chr5A 81.321 439 53 19 1855 2272 8059467 8059037 1.840000e-86 329.0
8 TraesCS6A01G292500 chr2A 96.675 391 11 2 1 389 755689065 755688675 0.000000e+00 649.0
9 TraesCS6A01G292500 chr5D 81.674 442 42 21 1855 2270 10038586 10038158 5.110000e-87 331.0
10 TraesCS6A01G292500 chr5B 82.020 406 39 20 1857 2238 42157849 42158244 5.150000e-82 315.0
11 TraesCS6A01G292500 chr5B 92.727 55 3 1 1855 1908 10267307 10267361 7.350000e-11 78.7
12 TraesCS6A01G292500 chr4B 100.000 28 0 0 1147 1174 134047198 134047225 4.000000e-03 52.8
13 TraesCS6A01G292500 chr4A 100.000 28 0 0 1147 1174 485708815 485708788 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G292500 chr6A 524330960 524333439 2479 False 4580.000000 4580 100.000000 1 2480 1 chr6A.!!$F1 2479
1 TraesCS6A01G292500 chr6D 382550286 382552441 2155 False 824.666667 1515 89.271333 447 2480 3 chr6D.!!$F1 2033
2 TraesCS6A01G292500 chr6B 572090217 572092154 1937 False 1088.000000 1474 88.647000 403 2273 2 chr6B.!!$F1 1870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.037697 TACGCGAGGCAAACATCAGT 60.038 50.0 15.93 0.0 0.0 3.41 F
644 668 0.323451 ATTTGGACGGGAAGGAAGGC 60.323 55.0 0.00 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1335 0.036483 ACTCTGCACACACACACACA 60.036 50.0 0.00 0.0 0.0 3.72 R
2433 2671 0.390603 TCATTCTTGCCGTGGTACCG 60.391 55.0 7.57 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.056125 GGCACGCAGCTTTTCCCC 62.056 66.667 0.27 0.00 44.79 4.81
21 22 4.404654 GCACGCAGCTTTTCCCCG 62.405 66.667 0.00 0.00 41.15 5.73
22 23 4.404654 CACGCAGCTTTTCCCCGC 62.405 66.667 0.00 0.00 0.00 6.13
26 27 3.431725 CAGCTTTTCCCCGCCGAC 61.432 66.667 0.00 0.00 0.00 4.79
45 46 3.945434 GCAGCATCGCCCGTCATG 61.945 66.667 0.00 0.00 0.00 3.07
46 47 3.945434 CAGCATCGCCCGTCATGC 61.945 66.667 6.31 6.31 44.96 4.06
48 49 3.204827 GCATCGCCCGTCATGCTT 61.205 61.111 6.98 0.00 41.93 3.91
49 50 2.764314 GCATCGCCCGTCATGCTTT 61.764 57.895 6.98 0.00 41.93 3.51
50 51 1.063006 CATCGCCCGTCATGCTTTG 59.937 57.895 0.00 0.00 0.00 2.77
51 52 2.764314 ATCGCCCGTCATGCTTTGC 61.764 57.895 0.00 0.00 0.00 3.68
52 53 4.481112 CGCCCGTCATGCTTTGCC 62.481 66.667 0.00 0.00 0.00 4.52
53 54 3.064324 GCCCGTCATGCTTTGCCT 61.064 61.111 0.00 0.00 0.00 4.75
54 55 2.639327 GCCCGTCATGCTTTGCCTT 61.639 57.895 0.00 0.00 0.00 4.35
55 56 1.213537 CCCGTCATGCTTTGCCTTG 59.786 57.895 0.00 0.00 0.00 3.61
56 57 1.444895 CCGTCATGCTTTGCCTTGC 60.445 57.895 0.00 0.00 0.00 4.01
57 58 1.286570 CGTCATGCTTTGCCTTGCA 59.713 52.632 0.00 0.00 43.67 4.08
58 59 0.731514 CGTCATGCTTTGCCTTGCAG 60.732 55.000 0.00 0.00 42.74 4.41
59 60 0.389426 GTCATGCTTTGCCTTGCAGG 60.389 55.000 0.00 0.00 42.74 4.85
60 61 0.540133 TCATGCTTTGCCTTGCAGGA 60.540 50.000 0.00 5.42 45.62 3.86
61 62 0.108804 CATGCTTTGCCTTGCAGGAG 60.109 55.000 0.00 0.00 42.61 3.69
62 63 1.885163 ATGCTTTGCCTTGCAGGAGC 61.885 55.000 15.31 15.31 44.14 4.70
63 64 2.564975 CTTTGCCTTGCAGGAGCG 59.435 61.111 0.00 0.00 46.23 5.03
64 65 2.985282 TTTGCCTTGCAGGAGCGG 60.985 61.111 0.00 0.00 46.23 5.52
65 66 3.790416 TTTGCCTTGCAGGAGCGGT 62.790 57.895 0.00 0.00 46.23 5.68
66 67 3.790416 TTGCCTTGCAGGAGCGGTT 62.790 57.895 0.00 0.00 46.23 4.44
67 68 3.741476 GCCTTGCAGGAGCGGTTG 61.741 66.667 0.00 0.00 46.23 3.77
68 69 3.058160 CCTTGCAGGAGCGGTTGG 61.058 66.667 0.00 0.00 46.23 3.77
69 70 2.281761 CTTGCAGGAGCGGTTGGT 60.282 61.111 0.00 0.00 46.23 3.67
70 71 2.594303 TTGCAGGAGCGGTTGGTG 60.594 61.111 0.00 0.00 46.23 4.17
73 74 2.281761 CAGGAGCGGTTGGTGCTT 60.282 61.111 0.00 0.00 41.92 3.91
74 75 2.281761 AGGAGCGGTTGGTGCTTG 60.282 61.111 0.00 0.00 41.92 4.01
75 76 4.043200 GGAGCGGTTGGTGCTTGC 62.043 66.667 0.00 0.00 44.18 4.01
76 77 4.389576 GAGCGGTTGGTGCTTGCG 62.390 66.667 0.00 0.00 44.18 4.85
95 96 4.777781 CAAGATGTGCACGCCATG 57.222 55.556 13.13 5.77 0.00 3.66
96 97 1.138036 CAAGATGTGCACGCCATGG 59.862 57.895 13.13 7.63 0.00 3.66
97 98 1.303561 AAGATGTGCACGCCATGGT 60.304 52.632 14.67 0.00 0.00 3.55
98 99 0.895100 AAGATGTGCACGCCATGGTT 60.895 50.000 14.67 0.00 0.00 3.67
99 100 1.153978 GATGTGCACGCCATGGTTG 60.154 57.895 14.67 12.16 0.00 3.77
100 101 2.546645 GATGTGCACGCCATGGTTGG 62.547 60.000 14.67 5.82 46.66 3.77
101 102 2.983030 GTGCACGCCATGGTTGGA 60.983 61.111 14.67 9.59 46.92 3.53
102 103 2.203408 TGCACGCCATGGTTGGAA 60.203 55.556 14.67 0.00 46.92 3.53
103 104 2.267351 TGCACGCCATGGTTGGAAG 61.267 57.895 14.67 2.83 46.92 3.46
104 105 2.568090 CACGCCATGGTTGGAAGC 59.432 61.111 14.67 0.00 46.92 3.86
105 106 2.115052 ACGCCATGGTTGGAAGCA 59.885 55.556 14.67 0.00 46.92 3.91
106 107 1.530419 ACGCCATGGTTGGAAGCAA 60.530 52.632 14.67 0.00 46.92 3.91
107 108 1.080569 CGCCATGGTTGGAAGCAAC 60.081 57.895 14.67 0.00 46.92 4.17
108 109 1.080569 GCCATGGTTGGAAGCAACG 60.081 57.895 14.67 0.00 46.92 4.10
109 110 1.523154 GCCATGGTTGGAAGCAACGA 61.523 55.000 14.67 0.00 46.92 3.85
110 111 1.176527 CCATGGTTGGAAGCAACGAT 58.823 50.000 2.57 0.00 46.92 3.73
111 112 1.135315 CCATGGTTGGAAGCAACGATG 60.135 52.381 2.57 3.88 46.92 3.84
112 113 1.135315 CATGGTTGGAAGCAACGATGG 60.135 52.381 3.33 0.00 43.11 3.51
113 114 0.179004 TGGTTGGAAGCAACGATGGT 60.179 50.000 0.00 0.00 39.43 3.55
114 115 0.240945 GGTTGGAAGCAACGATGGTG 59.759 55.000 0.00 0.00 37.35 4.17
115 116 1.234821 GTTGGAAGCAACGATGGTGA 58.765 50.000 0.00 0.00 37.35 4.02
116 117 1.197721 GTTGGAAGCAACGATGGTGAG 59.802 52.381 0.00 0.00 37.35 3.51
117 118 0.955428 TGGAAGCAACGATGGTGAGC 60.955 55.000 0.00 0.00 37.35 4.26
118 119 1.648467 GGAAGCAACGATGGTGAGCC 61.648 60.000 0.00 0.00 37.35 4.70
132 133 4.126437 TGGTGAGCCATTGTATTGTATCG 58.874 43.478 0.00 0.00 40.46 2.92
133 134 4.141824 TGGTGAGCCATTGTATTGTATCGA 60.142 41.667 0.00 0.00 40.46 3.59
134 135 4.449068 GGTGAGCCATTGTATTGTATCGAG 59.551 45.833 0.00 0.00 34.09 4.04
135 136 5.050490 GTGAGCCATTGTATTGTATCGAGT 58.950 41.667 0.00 0.00 0.00 4.18
136 137 5.175856 GTGAGCCATTGTATTGTATCGAGTC 59.824 44.000 0.00 0.00 0.00 3.36
137 138 4.632153 AGCCATTGTATTGTATCGAGTCC 58.368 43.478 0.00 0.00 0.00 3.85
138 139 3.746492 GCCATTGTATTGTATCGAGTCCC 59.254 47.826 0.00 0.00 0.00 4.46
139 140 4.742440 GCCATTGTATTGTATCGAGTCCCA 60.742 45.833 0.00 0.00 0.00 4.37
140 141 4.750098 CCATTGTATTGTATCGAGTCCCAC 59.250 45.833 0.00 0.00 0.00 4.61
141 142 5.453339 CCATTGTATTGTATCGAGTCCCACT 60.453 44.000 0.00 0.00 0.00 4.00
142 143 4.913335 TGTATTGTATCGAGTCCCACTC 57.087 45.455 0.00 0.00 41.71 3.51
143 144 4.274978 TGTATTGTATCGAGTCCCACTCA 58.725 43.478 4.60 0.00 45.30 3.41
144 145 4.893524 TGTATTGTATCGAGTCCCACTCAT 59.106 41.667 4.60 0.61 45.30 2.90
145 146 4.592485 ATTGTATCGAGTCCCACTCATC 57.408 45.455 4.60 0.00 45.30 2.92
146 147 2.307768 TGTATCGAGTCCCACTCATCC 58.692 52.381 4.60 0.00 45.30 3.51
147 148 1.614413 GTATCGAGTCCCACTCATCCC 59.386 57.143 4.60 0.00 45.30 3.85
148 149 0.263172 ATCGAGTCCCACTCATCCCT 59.737 55.000 4.60 0.00 45.30 4.20
149 150 0.684479 TCGAGTCCCACTCATCCCTG 60.684 60.000 4.60 0.00 45.30 4.45
150 151 0.972983 CGAGTCCCACTCATCCCTGT 60.973 60.000 4.60 0.00 45.30 4.00
151 152 0.827368 GAGTCCCACTCATCCCTGTC 59.173 60.000 0.00 0.00 44.45 3.51
152 153 0.117140 AGTCCCACTCATCCCTGTCA 59.883 55.000 0.00 0.00 0.00 3.58
153 154 0.250513 GTCCCACTCATCCCTGTCAC 59.749 60.000 0.00 0.00 0.00 3.67
154 155 0.178906 TCCCACTCATCCCTGTCACA 60.179 55.000 0.00 0.00 0.00 3.58
155 156 0.251354 CCCACTCATCCCTGTCACAG 59.749 60.000 0.00 0.00 0.00 3.66
156 157 0.392193 CCACTCATCCCTGTCACAGC 60.392 60.000 0.00 0.00 0.00 4.40
157 158 0.392193 CACTCATCCCTGTCACAGCC 60.392 60.000 0.00 0.00 0.00 4.85
158 159 1.222936 CTCATCCCTGTCACAGCCC 59.777 63.158 0.00 0.00 0.00 5.19
159 160 2.124983 CATCCCTGTCACAGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
160 161 2.607750 ATCCCTGTCACAGCCCGT 60.608 61.111 0.00 0.00 0.00 5.28
197 198 3.805497 GGGGGATGGGGGACGAAC 61.805 72.222 0.00 0.00 0.00 3.95
198 199 4.171103 GGGGATGGGGGACGAACG 62.171 72.222 0.00 0.00 0.00 3.95
199 200 3.078836 GGGATGGGGGACGAACGA 61.079 66.667 0.14 0.00 0.00 3.85
200 201 2.662070 GGGATGGGGGACGAACGAA 61.662 63.158 0.14 0.00 0.00 3.85
201 202 1.153429 GGATGGGGGACGAACGAAG 60.153 63.158 0.14 0.00 0.00 3.79
202 203 1.610554 GGATGGGGGACGAACGAAGA 61.611 60.000 0.14 0.00 0.00 2.87
203 204 0.248289 GATGGGGGACGAACGAAGAA 59.752 55.000 0.14 0.00 0.00 2.52
204 205 0.249398 ATGGGGGACGAACGAAGAAG 59.751 55.000 0.14 0.00 0.00 2.85
205 206 0.828762 TGGGGGACGAACGAAGAAGA 60.829 55.000 0.14 0.00 0.00 2.87
206 207 0.389556 GGGGGACGAACGAAGAAGAC 60.390 60.000 0.14 0.00 0.00 3.01
207 208 0.731855 GGGGACGAACGAAGAAGACG 60.732 60.000 0.14 0.00 0.00 4.18
208 209 0.239347 GGGACGAACGAAGAAGACGA 59.761 55.000 0.14 0.00 34.70 4.20
209 210 1.604396 GGACGAACGAAGAAGACGAG 58.396 55.000 0.14 0.00 34.70 4.18
210 211 1.196354 GGACGAACGAAGAAGACGAGA 59.804 52.381 0.14 0.00 34.70 4.04
211 212 2.350197 GGACGAACGAAGAAGACGAGAA 60.350 50.000 0.14 0.00 34.70 2.87
212 213 3.294943 GACGAACGAAGAAGACGAGAAA 58.705 45.455 0.14 0.00 34.70 2.52
213 214 3.298317 ACGAACGAAGAAGACGAGAAAG 58.702 45.455 0.14 0.00 34.70 2.62
214 215 2.657372 CGAACGAAGAAGACGAGAAAGG 59.343 50.000 0.00 0.00 34.70 3.11
215 216 2.726832 ACGAAGAAGACGAGAAAGGG 57.273 50.000 0.00 0.00 34.70 3.95
216 217 2.236766 ACGAAGAAGACGAGAAAGGGA 58.763 47.619 0.00 0.00 34.70 4.20
217 218 2.229302 ACGAAGAAGACGAGAAAGGGAG 59.771 50.000 0.00 0.00 34.70 4.30
218 219 2.488545 CGAAGAAGACGAGAAAGGGAGA 59.511 50.000 0.00 0.00 0.00 3.71
219 220 3.426963 CGAAGAAGACGAGAAAGGGAGAG 60.427 52.174 0.00 0.00 0.00 3.20
220 221 2.452505 AGAAGACGAGAAAGGGAGAGG 58.547 52.381 0.00 0.00 0.00 3.69
221 222 2.041891 AGAAGACGAGAAAGGGAGAGGA 59.958 50.000 0.00 0.00 0.00 3.71
222 223 2.838637 AGACGAGAAAGGGAGAGGAT 57.161 50.000 0.00 0.00 0.00 3.24
223 224 3.955524 AGACGAGAAAGGGAGAGGATA 57.044 47.619 0.00 0.00 0.00 2.59
224 225 4.252570 AGACGAGAAAGGGAGAGGATAA 57.747 45.455 0.00 0.00 0.00 1.75
225 226 4.211920 AGACGAGAAAGGGAGAGGATAAG 58.788 47.826 0.00 0.00 0.00 1.73
226 227 3.301274 ACGAGAAAGGGAGAGGATAAGG 58.699 50.000 0.00 0.00 0.00 2.69
227 228 2.036604 CGAGAAAGGGAGAGGATAAGGC 59.963 54.545 0.00 0.00 0.00 4.35
228 229 3.313791 GAGAAAGGGAGAGGATAAGGCT 58.686 50.000 0.00 0.00 0.00 4.58
229 230 3.044894 AGAAAGGGAGAGGATAAGGCTG 58.955 50.000 0.00 0.00 0.00 4.85
230 231 1.813102 AAGGGAGAGGATAAGGCTGG 58.187 55.000 0.00 0.00 0.00 4.85
231 232 0.104725 AGGGAGAGGATAAGGCTGGG 60.105 60.000 0.00 0.00 0.00 4.45
232 233 0.104934 GGGAGAGGATAAGGCTGGGA 60.105 60.000 0.00 0.00 0.00 4.37
233 234 1.485978 GGGAGAGGATAAGGCTGGGAT 60.486 57.143 0.00 0.00 0.00 3.85
234 235 1.627834 GGAGAGGATAAGGCTGGGATG 59.372 57.143 0.00 0.00 0.00 3.51
235 236 1.627834 GAGAGGATAAGGCTGGGATGG 59.372 57.143 0.00 0.00 0.00 3.51
236 237 1.224120 AGAGGATAAGGCTGGGATGGA 59.776 52.381 0.00 0.00 0.00 3.41
237 238 2.057922 GAGGATAAGGCTGGGATGGAA 58.942 52.381 0.00 0.00 0.00 3.53
238 239 2.443255 GAGGATAAGGCTGGGATGGAAA 59.557 50.000 0.00 0.00 0.00 3.13
239 240 2.444766 AGGATAAGGCTGGGATGGAAAG 59.555 50.000 0.00 0.00 0.00 2.62
240 241 2.234143 GATAAGGCTGGGATGGAAAGC 58.766 52.381 0.00 0.00 36.17 3.51
241 242 0.107214 TAAGGCTGGGATGGAAAGCG 60.107 55.000 0.00 0.00 37.83 4.68
242 243 2.830370 GGCTGGGATGGAAAGCGG 60.830 66.667 0.00 0.00 37.83 5.52
243 244 2.044946 GCTGGGATGGAAAGCGGT 60.045 61.111 0.00 0.00 0.00 5.68
244 245 2.409870 GCTGGGATGGAAAGCGGTG 61.410 63.158 0.00 0.00 0.00 4.94
245 246 1.299648 CTGGGATGGAAAGCGGTGA 59.700 57.895 0.00 0.00 0.00 4.02
246 247 0.745845 CTGGGATGGAAAGCGGTGAG 60.746 60.000 0.00 0.00 0.00 3.51
279 280 2.682952 CTACGCGTGTAGTGGATAGG 57.317 55.000 24.59 1.01 42.61 2.57
280 281 0.664761 TACGCGTGTAGTGGATAGGC 59.335 55.000 24.59 0.00 33.90 3.93
281 282 1.657487 CGCGTGTAGTGGATAGGCG 60.657 63.158 0.00 0.00 44.96 5.52
282 283 1.731700 GCGTGTAGTGGATAGGCGA 59.268 57.895 0.00 0.00 0.00 5.54
283 284 0.594284 GCGTGTAGTGGATAGGCGAC 60.594 60.000 0.00 0.00 0.00 5.19
284 285 0.316772 CGTGTAGTGGATAGGCGACG 60.317 60.000 0.00 0.00 0.00 5.12
285 286 0.594284 GTGTAGTGGATAGGCGACGC 60.594 60.000 12.43 12.43 0.00 5.19
286 287 1.033202 TGTAGTGGATAGGCGACGCA 61.033 55.000 23.09 1.44 0.00 5.24
287 288 0.594284 GTAGTGGATAGGCGACGCAC 60.594 60.000 23.09 9.93 0.00 5.34
288 289 1.033202 TAGTGGATAGGCGACGCACA 61.033 55.000 23.09 8.73 0.00 4.57
289 290 2.165301 GTGGATAGGCGACGCACAC 61.165 63.158 23.09 16.69 0.00 3.82
301 302 3.075998 GCACACGCGTGAGATGAG 58.924 61.111 42.94 24.17 46.80 2.90
302 303 3.075998 CACACGCGTGAGATGAGC 58.924 61.111 42.94 0.00 46.80 4.26
309 310 3.558411 GTGAGATGAGCGCCGCAC 61.558 66.667 13.36 5.47 0.00 5.34
321 322 2.813474 CCGCACGATCGGCTTTGA 60.813 61.111 20.98 0.00 43.18 2.69
322 323 2.173669 CCGCACGATCGGCTTTGAT 61.174 57.895 20.98 0.00 43.18 2.57
323 324 1.273887 CGCACGATCGGCTTTGATC 59.726 57.895 20.98 4.66 41.10 2.92
328 329 1.273887 GATCGGCTTTGATCGCACG 59.726 57.895 0.00 0.00 35.80 5.34
329 330 2.094126 GATCGGCTTTGATCGCACGG 62.094 60.000 0.00 0.00 35.80 4.94
330 331 4.520846 CGGCTTTGATCGCACGGC 62.521 66.667 0.00 0.00 0.00 5.68
331 332 3.127533 GGCTTTGATCGCACGGCT 61.128 61.111 0.00 0.00 0.00 5.52
332 333 1.813753 GGCTTTGATCGCACGGCTA 60.814 57.895 0.00 0.00 0.00 3.93
333 334 1.638467 GCTTTGATCGCACGGCTAG 59.362 57.895 0.00 0.00 0.00 3.42
334 335 1.638467 CTTTGATCGCACGGCTAGC 59.362 57.895 6.04 6.04 0.00 3.42
342 343 4.415332 CACGGCTAGCGACACGGT 62.415 66.667 9.00 0.00 41.50 4.83
343 344 3.677648 ACGGCTAGCGACACGGTT 61.678 61.111 9.00 0.00 38.83 4.44
344 345 2.431942 CGGCTAGCGACACGGTTT 60.432 61.111 9.00 0.00 38.83 3.27
345 346 1.153978 CGGCTAGCGACACGGTTTA 60.154 57.895 9.00 0.00 38.83 2.01
346 347 1.408474 CGGCTAGCGACACGGTTTAC 61.408 60.000 9.00 0.00 38.83 2.01
356 357 3.246064 CGGTTTACGCGAGGCAAA 58.754 55.556 15.93 4.40 34.82 3.68
357 358 1.154543 CGGTTTACGCGAGGCAAAC 60.155 57.895 15.93 16.17 38.58 2.93
358 359 1.833434 CGGTTTACGCGAGGCAAACA 61.833 55.000 15.93 0.00 40.05 2.83
359 360 0.519961 GGTTTACGCGAGGCAAACAT 59.480 50.000 15.93 0.00 40.05 2.71
360 361 1.465187 GGTTTACGCGAGGCAAACATC 60.465 52.381 15.93 2.54 40.05 3.06
361 362 1.195900 GTTTACGCGAGGCAAACATCA 59.804 47.619 15.93 0.00 38.91 3.07
362 363 1.075542 TTACGCGAGGCAAACATCAG 58.924 50.000 15.93 0.00 0.00 2.90
363 364 0.037697 TACGCGAGGCAAACATCAGT 60.038 50.000 15.93 0.00 0.00 3.41
364 365 1.291877 ACGCGAGGCAAACATCAGTC 61.292 55.000 15.93 0.00 0.00 3.51
365 366 1.421485 GCGAGGCAAACATCAGTCG 59.579 57.895 0.00 0.00 0.00 4.18
366 367 1.970917 GCGAGGCAAACATCAGTCGG 61.971 60.000 0.00 0.00 0.00 4.79
367 368 0.670546 CGAGGCAAACATCAGTCGGT 60.671 55.000 0.00 0.00 0.00 4.69
368 369 1.523758 GAGGCAAACATCAGTCGGTT 58.476 50.000 0.00 0.00 0.00 4.44
369 370 1.880027 GAGGCAAACATCAGTCGGTTT 59.120 47.619 0.00 0.00 37.69 3.27
370 371 1.880027 AGGCAAACATCAGTCGGTTTC 59.120 47.619 0.00 0.00 35.17 2.78
371 372 1.606668 GGCAAACATCAGTCGGTTTCA 59.393 47.619 0.00 0.00 35.17 2.69
372 373 2.034053 GGCAAACATCAGTCGGTTTCAA 59.966 45.455 0.00 0.00 35.17 2.69
373 374 3.490078 GGCAAACATCAGTCGGTTTCAAA 60.490 43.478 0.00 0.00 35.17 2.69
374 375 3.485743 GCAAACATCAGTCGGTTTCAAAC 59.514 43.478 0.00 0.00 35.17 2.93
375 376 4.667262 CAAACATCAGTCGGTTTCAAACA 58.333 39.130 1.93 0.00 35.17 2.83
376 377 4.974368 AACATCAGTCGGTTTCAAACAA 57.026 36.364 1.93 0.00 0.00 2.83
377 378 4.974368 ACATCAGTCGGTTTCAAACAAA 57.026 36.364 1.93 0.00 0.00 2.83
378 379 4.668289 ACATCAGTCGGTTTCAAACAAAC 58.332 39.130 1.93 0.00 0.00 2.93
379 380 3.392769 TCAGTCGGTTTCAAACAAACG 57.607 42.857 1.93 0.00 0.00 3.60
380 381 3.001414 TCAGTCGGTTTCAAACAAACGA 58.999 40.909 1.93 0.00 0.00 3.85
381 382 3.623960 TCAGTCGGTTTCAAACAAACGAT 59.376 39.130 1.93 0.00 0.00 3.73
382 383 4.095185 TCAGTCGGTTTCAAACAAACGATT 59.905 37.500 1.93 0.00 0.00 3.34
383 384 4.796312 CAGTCGGTTTCAAACAAACGATTT 59.204 37.500 1.93 0.00 0.00 2.17
384 385 5.032220 AGTCGGTTTCAAACAAACGATTTC 58.968 37.500 1.93 0.00 0.00 2.17
385 386 4.205588 GTCGGTTTCAAACAAACGATTTCC 59.794 41.667 1.93 0.00 0.00 3.13
386 387 4.096682 TCGGTTTCAAACAAACGATTTCCT 59.903 37.500 1.93 0.00 0.00 3.36
387 388 4.801516 CGGTTTCAAACAAACGATTTCCTT 59.198 37.500 1.93 0.00 0.00 3.36
388 389 5.276161 CGGTTTCAAACAAACGATTTCCTTG 60.276 40.000 1.93 0.00 0.00 3.61
389 390 5.579119 GGTTTCAAACAAACGATTTCCTTGT 59.421 36.000 1.93 0.00 34.81 3.16
390 391 6.237728 GGTTTCAAACAAACGATTTCCTTGTC 60.238 38.462 1.93 0.00 32.21 3.18
391 392 5.828299 TCAAACAAACGATTTCCTTGTCT 57.172 34.783 0.00 0.00 32.21 3.41
392 393 6.928979 TCAAACAAACGATTTCCTTGTCTA 57.071 33.333 0.00 0.00 32.21 2.59
393 394 7.323049 TCAAACAAACGATTTCCTTGTCTAA 57.677 32.000 0.00 0.00 32.21 2.10
394 395 7.936584 TCAAACAAACGATTTCCTTGTCTAAT 58.063 30.769 0.00 0.00 32.21 1.73
395 396 8.410141 TCAAACAAACGATTTCCTTGTCTAATT 58.590 29.630 0.00 0.00 32.21 1.40
396 397 9.030301 CAAACAAACGATTTCCTTGTCTAATTT 57.970 29.630 0.00 0.00 32.21 1.82
429 430 2.490509 CGGATTGTTTACCCAGAAACCC 59.509 50.000 0.00 0.00 38.33 4.11
494 495 3.839954 GCAATAATAACACTTCGCGTCCG 60.840 47.826 5.77 0.00 0.00 4.79
526 541 3.889538 ACTTCCGAGATCGATCCAACATA 59.110 43.478 21.66 3.03 43.02 2.29
548 563 2.827921 CAATGAAACTTCCCCTTCCCTG 59.172 50.000 0.00 0.00 0.00 4.45
632 656 9.617975 CTTTTATTCTCAGTTTCAGATTTGGAC 57.382 33.333 0.00 0.00 0.00 4.02
640 664 1.651737 TCAGATTTGGACGGGAAGGA 58.348 50.000 0.00 0.00 0.00 3.36
641 665 1.982226 TCAGATTTGGACGGGAAGGAA 59.018 47.619 0.00 0.00 0.00 3.36
642 666 2.027192 TCAGATTTGGACGGGAAGGAAG 60.027 50.000 0.00 0.00 0.00 3.46
644 668 0.323451 ATTTGGACGGGAAGGAAGGC 60.323 55.000 0.00 0.00 0.00 4.35
651 675 2.747855 GGAAGGAAGGCCTGCACG 60.748 66.667 14.44 0.00 46.28 5.34
690 714 3.736720 TCATCAGACATGGCTGCTATTC 58.263 45.455 24.63 0.00 35.86 1.75
992 1031 5.701750 AGTGTCACTGTCACTAGTAGTGTAG 59.298 44.000 25.83 24.50 46.03 2.74
1095 1146 3.419759 GCGGCCAAGTACACGGTG 61.420 66.667 6.58 6.58 0.00 4.94
1189 1240 2.420138 GGTGAGCTGATCTCCGCTA 58.580 57.895 0.00 0.00 41.18 4.26
1191 1242 1.028905 GTGAGCTGATCTCCGCTACT 58.971 55.000 0.00 0.00 41.18 2.57
1247 1319 2.791256 GCGCTTGTGTGTGTGTGT 59.209 55.556 0.00 0.00 0.00 3.72
1248 1320 1.583451 GCGCTTGTGTGTGTGTGTG 60.583 57.895 0.00 0.00 0.00 3.82
1249 1321 1.793581 CGCTTGTGTGTGTGTGTGT 59.206 52.632 0.00 0.00 0.00 3.72
1250 1322 0.521034 CGCTTGTGTGTGTGTGTGTG 60.521 55.000 0.00 0.00 0.00 3.82
1251 1323 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
1252 1324 1.728825 GCTTGTGTGTGTGTGTGTGTG 60.729 52.381 0.00 0.00 0.00 3.82
1253 1325 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
1254 1326 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1255 1327 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1256 1328 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1257 1329 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1258 1330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1259 1331 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1260 1332 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1261 1333 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1262 1334 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1263 1335 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1264 1336 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1265 1337 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1266 1338 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1267 1339 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1268 1340 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1269 1341 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1270 1342 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1271 1343 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1272 1344 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1273 1345 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1274 1346 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1369 1469 4.033776 CCAAGGGCAAGAGGGCGA 62.034 66.667 0.00 0.00 44.56 5.54
1480 1580 1.101635 CGCCGTCAGGGTCATCTAGA 61.102 60.000 0.00 0.00 38.44 2.43
1483 1583 1.678627 CCGTCAGGGTCATCTAGAGTG 59.321 57.143 0.00 0.00 0.00 3.51
1484 1584 2.370349 CGTCAGGGTCATCTAGAGTGT 58.630 52.381 0.00 0.00 0.00 3.55
1485 1585 2.755655 CGTCAGGGTCATCTAGAGTGTT 59.244 50.000 0.00 0.00 0.00 3.32
1486 1586 3.193691 CGTCAGGGTCATCTAGAGTGTTT 59.806 47.826 0.00 0.00 0.00 2.83
1495 1605 7.309316 GGGTCATCTAGAGTGTTTATAGCTACC 60.309 44.444 0.00 0.00 0.00 3.18
1502 1612 7.907214 AGAGTGTTTATAGCTACCTGTTTTG 57.093 36.000 0.00 0.00 0.00 2.44
1503 1613 7.450903 AGAGTGTTTATAGCTACCTGTTTTGT 58.549 34.615 0.00 0.00 0.00 2.83
1504 1614 7.603024 AGAGTGTTTATAGCTACCTGTTTTGTC 59.397 37.037 0.00 0.00 0.00 3.18
1505 1615 7.221450 AGTGTTTATAGCTACCTGTTTTGTCA 58.779 34.615 0.00 0.00 0.00 3.58
1506 1616 7.717875 AGTGTTTATAGCTACCTGTTTTGTCAA 59.282 33.333 0.00 0.00 0.00 3.18
1507 1617 7.801783 GTGTTTATAGCTACCTGTTTTGTCAAC 59.198 37.037 0.00 0.00 0.00 3.18
1508 1618 7.717875 TGTTTATAGCTACCTGTTTTGTCAACT 59.282 33.333 0.00 0.00 0.00 3.16
1509 1619 7.667043 TTATAGCTACCTGTTTTGTCAACTG 57.333 36.000 0.00 0.00 0.00 3.16
1522 1632 3.340928 TGTCAACTGCATTCAGATCAGG 58.659 45.455 0.00 0.00 42.95 3.86
1537 1647 2.386661 TCAGGTCGATCCAAAGCTTC 57.613 50.000 0.00 0.00 39.02 3.86
1544 1654 2.159282 TCGATCCAAAGCTTCCGACTAC 60.159 50.000 0.00 0.00 0.00 2.73
1569 1679 7.042523 ACAGCTTTTTAGTTTGCTTAATGCTTG 60.043 33.333 0.00 0.00 43.37 4.01
1579 1689 2.989166 GCTTAATGCTTGAACCAACTGC 59.011 45.455 0.00 0.00 38.95 4.40
1597 1707 2.887152 CTGCTAGTTTGCTTCCCAGTTT 59.113 45.455 0.00 0.00 0.00 2.66
1598 1708 3.295973 TGCTAGTTTGCTTCCCAGTTTT 58.704 40.909 0.00 0.00 0.00 2.43
1600 1710 4.890581 TGCTAGTTTGCTTCCCAGTTTTTA 59.109 37.500 0.00 0.00 0.00 1.52
1621 1731 1.272490 TCCGTGCACTCTTGTTCTAGG 59.728 52.381 16.19 4.48 0.00 3.02
1673 1783 5.859205 AATTTGAATATGGGTCTGAAGGC 57.141 39.130 0.00 0.00 0.00 4.35
1676 1786 5.708736 TTGAATATGGGTCTGAAGGCTTA 57.291 39.130 0.00 0.00 0.00 3.09
1703 1813 0.461961 ACTGGATGGACTAGCGCTTC 59.538 55.000 18.68 8.16 0.00 3.86
1803 1969 2.884012 TGAAACTTGTACTGGTGCCATG 59.116 45.455 0.00 0.00 0.00 3.66
1830 1996 1.531149 CGATCGGATGTTTGCATACCC 59.469 52.381 7.38 0.00 35.07 3.69
1893 2059 1.205417 GATCCACAAACCTTGCCATGG 59.795 52.381 7.63 7.63 0.00 3.66
1906 2072 3.591196 TGCCATGGTAAATTTCACAGC 57.409 42.857 14.67 0.00 0.00 4.40
1907 2073 3.164268 TGCCATGGTAAATTTCACAGCT 58.836 40.909 14.67 0.00 0.00 4.24
1908 2074 4.339748 TGCCATGGTAAATTTCACAGCTA 58.660 39.130 14.67 0.00 0.00 3.32
1909 2075 4.398988 TGCCATGGTAAATTTCACAGCTAG 59.601 41.667 14.67 0.00 0.00 3.42
1910 2076 4.399303 GCCATGGTAAATTTCACAGCTAGT 59.601 41.667 14.67 0.00 0.00 2.57
1911 2077 5.588648 GCCATGGTAAATTTCACAGCTAGTA 59.411 40.000 14.67 0.00 0.00 1.82
1934 2100 0.526954 CCCACTATGCACCGTCGTAC 60.527 60.000 0.00 0.00 0.00 3.67
1943 2112 1.401931 GCACCGTCGTACTTCTAAGCA 60.402 52.381 0.00 0.00 0.00 3.91
1956 2125 5.858381 ACTTCTAAGCACTTGAAGATCACA 58.142 37.500 19.94 0.00 39.42 3.58
1959 2128 6.732531 TCTAAGCACTTGAAGATCACATTG 57.267 37.500 0.00 0.00 0.00 2.82
1973 2142 3.742385 TCACATTGCTGTCATGTCAGAA 58.258 40.909 21.91 10.28 37.61 3.02
1974 2143 3.499537 TCACATTGCTGTCATGTCAGAAC 59.500 43.478 21.91 7.27 37.61 3.01
1976 2145 3.884693 ACATTGCTGTCATGTCAGAACAA 59.115 39.130 21.91 16.67 39.30 2.83
1986 2155 7.219535 CTGTCATGTCAGAACAAACTTCTTTTG 59.780 37.037 13.92 0.00 42.45 2.44
2013 2182 1.276145 GGCGCGATAATCACTCGTCC 61.276 60.000 12.10 0.00 38.37 4.79
2156 2325 2.362077 CCACTCCCACCAAAAACTTGAG 59.638 50.000 0.00 0.00 0.00 3.02
2159 2328 0.392706 CCCACCAAAAACTTGAGGCC 59.607 55.000 0.00 0.00 0.00 5.19
2166 2335 0.032615 AAAACTTGAGGCCACCACCA 60.033 50.000 5.01 0.00 0.00 4.17
2196 2365 2.859165 TTGCGAGAAAACCTGGAGAT 57.141 45.000 0.00 0.00 0.00 2.75
2214 2384 8.985922 CCTGGAGATGATGATATAAGGTTATGA 58.014 37.037 0.00 0.00 0.00 2.15
2315 2548 1.616865 AGCTACGTTTACTGGCACTGA 59.383 47.619 0.00 0.00 0.00 3.41
2353 2586 8.277197 TCATTTCTTCAGATTCCAACCTCATAT 58.723 33.333 0.00 0.00 0.00 1.78
2396 2634 2.957402 TCCAAAGTCAGGATGTTGCT 57.043 45.000 0.00 0.00 37.40 3.91
2420 2658 4.320714 GCTCAGTTGCTTCATTGATTGTGA 60.321 41.667 0.00 0.00 0.00 3.58
2442 2680 0.677731 TCCAGTAGGACGGTACCACG 60.678 60.000 13.54 0.80 39.61 4.94
2451 2689 0.672401 ACGGTACCACGGCAAGAATG 60.672 55.000 13.54 0.00 38.39 2.67
2462 2700 2.666619 CGGCAAGAATGAAAGACACTGC 60.667 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.404654 GGGAAAAGCTGCGTGCCG 62.405 66.667 0.00 0.00 44.23 5.69
3 4 4.056125 GGGGAAAAGCTGCGTGCC 62.056 66.667 0.00 0.00 44.23 5.01
4 5 4.404654 CGGGGAAAAGCTGCGTGC 62.405 66.667 0.00 0.00 43.29 5.34
5 6 4.404654 GCGGGGAAAAGCTGCGTG 62.405 66.667 0.00 0.00 0.00 5.34
9 10 3.431725 GTCGGCGGGGAAAAGCTG 61.432 66.667 7.21 0.00 40.87 4.24
28 29 3.945434 CATGACGGGCGATGCTGC 61.945 66.667 0.00 0.00 0.00 5.25
29 30 3.945434 GCATGACGGGCGATGCTG 61.945 66.667 0.00 0.00 41.52 4.41
31 32 2.764314 AAAGCATGACGGGCGATGC 61.764 57.895 9.38 9.38 44.49 3.91
32 33 1.063006 CAAAGCATGACGGGCGATG 59.937 57.895 0.00 0.00 36.08 3.84
33 34 2.764314 GCAAAGCATGACGGGCGAT 61.764 57.895 0.00 0.00 36.08 4.58
34 35 3.430862 GCAAAGCATGACGGGCGA 61.431 61.111 0.00 0.00 36.08 5.54
35 36 4.481112 GGCAAAGCATGACGGGCG 62.481 66.667 0.00 0.00 36.08 6.13
36 37 2.639327 AAGGCAAAGCATGACGGGC 61.639 57.895 0.00 0.00 44.22 6.13
37 38 1.213537 CAAGGCAAAGCATGACGGG 59.786 57.895 0.00 0.00 44.22 5.28
38 39 1.444895 GCAAGGCAAAGCATGACGG 60.445 57.895 0.00 0.00 44.22 4.79
39 40 0.731514 CTGCAAGGCAAAGCATGACG 60.732 55.000 0.00 0.00 44.22 4.35
40 41 3.117589 CTGCAAGGCAAAGCATGAC 57.882 52.632 0.00 0.00 40.42 3.06
52 53 2.281761 ACCAACCGCTCCTGCAAG 60.282 61.111 0.00 0.00 39.64 4.01
53 54 2.594303 CACCAACCGCTCCTGCAA 60.594 61.111 0.00 0.00 39.64 4.08
56 57 2.281761 AAGCACCAACCGCTCCTG 60.282 61.111 0.00 0.00 39.29 3.86
57 58 2.281761 CAAGCACCAACCGCTCCT 60.282 61.111 0.00 0.00 39.29 3.69
58 59 4.043200 GCAAGCACCAACCGCTCC 62.043 66.667 0.00 0.00 39.29 4.70
59 60 4.389576 CGCAAGCACCAACCGCTC 62.390 66.667 0.00 0.00 39.29 5.03
70 71 2.505557 GCACATCTTGCCGCAAGC 60.506 61.111 25.53 12.66 46.63 4.01
78 79 1.138036 CCATGGCGTGCACATCTTG 59.862 57.895 18.64 14.78 0.00 3.02
79 80 0.895100 AACCATGGCGTGCACATCTT 60.895 50.000 18.64 3.41 0.00 2.40
80 81 1.303561 AACCATGGCGTGCACATCT 60.304 52.632 18.64 0.00 0.00 2.90
81 82 1.153978 CAACCATGGCGTGCACATC 60.154 57.895 18.64 8.56 0.00 3.06
82 83 2.638354 CCAACCATGGCGTGCACAT 61.638 57.895 18.64 0.00 40.58 3.21
83 84 3.293714 CCAACCATGGCGTGCACA 61.294 61.111 18.64 0.00 40.58 4.57
89 90 2.801113 CGTTGCTTCCAACCATGGCG 62.801 60.000 13.04 2.72 46.76 5.69
90 91 1.080569 CGTTGCTTCCAACCATGGC 60.081 57.895 13.04 0.00 46.76 4.40
91 92 1.135315 CATCGTTGCTTCCAACCATGG 60.135 52.381 11.19 11.19 46.76 3.66
92 93 1.135315 CCATCGTTGCTTCCAACCATG 60.135 52.381 7.04 7.04 46.76 3.66
93 94 1.176527 CCATCGTTGCTTCCAACCAT 58.823 50.000 1.43 0.00 46.76 3.55
94 95 0.179004 ACCATCGTTGCTTCCAACCA 60.179 50.000 1.43 0.00 46.76 3.67
95 96 0.240945 CACCATCGTTGCTTCCAACC 59.759 55.000 1.43 0.00 46.76 3.77
96 97 1.197721 CTCACCATCGTTGCTTCCAAC 59.802 52.381 0.00 0.00 46.15 3.77
97 98 1.522668 CTCACCATCGTTGCTTCCAA 58.477 50.000 0.00 0.00 0.00 3.53
98 99 0.955428 GCTCACCATCGTTGCTTCCA 60.955 55.000 0.00 0.00 0.00 3.53
99 100 1.648467 GGCTCACCATCGTTGCTTCC 61.648 60.000 0.00 0.00 35.26 3.46
100 101 0.955428 TGGCTCACCATCGTTGCTTC 60.955 55.000 0.00 0.00 42.67 3.86
101 102 1.073025 TGGCTCACCATCGTTGCTT 59.927 52.632 0.00 0.00 42.67 3.91
102 103 2.749682 TGGCTCACCATCGTTGCT 59.250 55.556 0.00 0.00 42.67 3.91
111 112 4.377021 TCGATACAATACAATGGCTCACC 58.623 43.478 0.00 0.00 0.00 4.02
112 113 5.050490 ACTCGATACAATACAATGGCTCAC 58.950 41.667 0.00 0.00 0.00 3.51
113 114 5.276461 ACTCGATACAATACAATGGCTCA 57.724 39.130 0.00 0.00 0.00 4.26
114 115 4.686554 GGACTCGATACAATACAATGGCTC 59.313 45.833 0.00 0.00 0.00 4.70
115 116 4.503296 GGGACTCGATACAATACAATGGCT 60.503 45.833 0.00 0.00 0.00 4.75
116 117 3.746492 GGGACTCGATACAATACAATGGC 59.254 47.826 0.00 0.00 0.00 4.40
117 118 4.750098 GTGGGACTCGATACAATACAATGG 59.250 45.833 0.00 0.00 0.00 3.16
118 119 5.601662 AGTGGGACTCGATACAATACAATG 58.398 41.667 0.00 0.00 0.00 2.82
119 120 5.844004 GAGTGGGACTCGATACAATACAAT 58.156 41.667 0.00 0.00 35.28 2.71
120 121 5.258456 GAGTGGGACTCGATACAATACAA 57.742 43.478 0.00 0.00 35.28 2.41
121 122 4.913335 GAGTGGGACTCGATACAATACA 57.087 45.455 0.00 0.00 35.28 2.29
132 133 0.827368 GACAGGGATGAGTGGGACTC 59.173 60.000 0.00 0.00 45.26 3.36
133 134 0.117140 TGACAGGGATGAGTGGGACT 59.883 55.000 0.00 0.00 0.00 3.85
134 135 0.250513 GTGACAGGGATGAGTGGGAC 59.749 60.000 0.00 0.00 0.00 4.46
135 136 0.178906 TGTGACAGGGATGAGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
136 137 0.251354 CTGTGACAGGGATGAGTGGG 59.749 60.000 4.28 0.00 0.00 4.61
137 138 0.392193 GCTGTGACAGGGATGAGTGG 60.392 60.000 15.24 0.00 31.21 4.00
138 139 0.392193 GGCTGTGACAGGGATGAGTG 60.392 60.000 15.24 0.00 31.21 3.51
139 140 1.557269 GGGCTGTGACAGGGATGAGT 61.557 60.000 15.24 0.00 31.21 3.41
140 141 1.222936 GGGCTGTGACAGGGATGAG 59.777 63.158 15.24 0.00 31.21 2.90
141 142 2.659063 CGGGCTGTGACAGGGATGA 61.659 63.158 15.24 0.00 31.21 2.92
142 143 2.124983 CGGGCTGTGACAGGGATG 60.125 66.667 15.24 0.00 31.21 3.51
143 144 2.607750 ACGGGCTGTGACAGGGAT 60.608 61.111 15.24 0.00 31.21 3.85
180 181 3.805497 GTTCGTCCCCCATCCCCC 61.805 72.222 0.00 0.00 0.00 5.40
181 182 4.171103 CGTTCGTCCCCCATCCCC 62.171 72.222 0.00 0.00 0.00 4.81
182 183 2.588856 CTTCGTTCGTCCCCCATCCC 62.589 65.000 0.00 0.00 0.00 3.85
183 184 1.153429 CTTCGTTCGTCCCCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
184 185 0.248289 TTCTTCGTTCGTCCCCCATC 59.752 55.000 0.00 0.00 0.00 3.51
185 186 0.249398 CTTCTTCGTTCGTCCCCCAT 59.751 55.000 0.00 0.00 0.00 4.00
186 187 0.828762 TCTTCTTCGTTCGTCCCCCA 60.829 55.000 0.00 0.00 0.00 4.96
187 188 0.389556 GTCTTCTTCGTTCGTCCCCC 60.390 60.000 0.00 0.00 0.00 5.40
188 189 0.731855 CGTCTTCTTCGTTCGTCCCC 60.732 60.000 0.00 0.00 0.00 4.81
189 190 0.239347 TCGTCTTCTTCGTTCGTCCC 59.761 55.000 0.00 0.00 0.00 4.46
190 191 1.196354 TCTCGTCTTCTTCGTTCGTCC 59.804 52.381 0.00 0.00 0.00 4.79
191 192 2.591066 TCTCGTCTTCTTCGTTCGTC 57.409 50.000 0.00 0.00 0.00 4.20
192 193 3.298317 CTTTCTCGTCTTCTTCGTTCGT 58.702 45.455 0.00 0.00 0.00 3.85
193 194 2.657372 CCTTTCTCGTCTTCTTCGTTCG 59.343 50.000 0.00 0.00 0.00 3.95
194 195 2.987821 CCCTTTCTCGTCTTCTTCGTTC 59.012 50.000 0.00 0.00 0.00 3.95
195 196 2.626743 TCCCTTTCTCGTCTTCTTCGTT 59.373 45.455 0.00 0.00 0.00 3.85
196 197 2.229302 CTCCCTTTCTCGTCTTCTTCGT 59.771 50.000 0.00 0.00 0.00 3.85
197 198 2.488545 TCTCCCTTTCTCGTCTTCTTCG 59.511 50.000 0.00 0.00 0.00 3.79
198 199 3.119280 CCTCTCCCTTTCTCGTCTTCTTC 60.119 52.174 0.00 0.00 0.00 2.87
199 200 2.829120 CCTCTCCCTTTCTCGTCTTCTT 59.171 50.000 0.00 0.00 0.00 2.52
200 201 2.041891 TCCTCTCCCTTTCTCGTCTTCT 59.958 50.000 0.00 0.00 0.00 2.85
201 202 2.448453 TCCTCTCCCTTTCTCGTCTTC 58.552 52.381 0.00 0.00 0.00 2.87
202 203 2.606751 TCCTCTCCCTTTCTCGTCTT 57.393 50.000 0.00 0.00 0.00 3.01
203 204 2.838637 ATCCTCTCCCTTTCTCGTCT 57.161 50.000 0.00 0.00 0.00 4.18
204 205 3.319689 CCTTATCCTCTCCCTTTCTCGTC 59.680 52.174 0.00 0.00 0.00 4.20
205 206 3.301274 CCTTATCCTCTCCCTTTCTCGT 58.699 50.000 0.00 0.00 0.00 4.18
206 207 2.036604 GCCTTATCCTCTCCCTTTCTCG 59.963 54.545 0.00 0.00 0.00 4.04
207 208 3.070878 CAGCCTTATCCTCTCCCTTTCTC 59.929 52.174 0.00 0.00 0.00 2.87
208 209 3.044894 CAGCCTTATCCTCTCCCTTTCT 58.955 50.000 0.00 0.00 0.00 2.52
209 210 2.105649 CCAGCCTTATCCTCTCCCTTTC 59.894 54.545 0.00 0.00 0.00 2.62
210 211 2.131023 CCAGCCTTATCCTCTCCCTTT 58.869 52.381 0.00 0.00 0.00 3.11
211 212 1.697291 CCCAGCCTTATCCTCTCCCTT 60.697 57.143 0.00 0.00 0.00 3.95
212 213 0.104725 CCCAGCCTTATCCTCTCCCT 60.105 60.000 0.00 0.00 0.00 4.20
213 214 0.104934 TCCCAGCCTTATCCTCTCCC 60.105 60.000 0.00 0.00 0.00 4.30
214 215 1.627834 CATCCCAGCCTTATCCTCTCC 59.372 57.143 0.00 0.00 0.00 3.71
215 216 1.627834 CCATCCCAGCCTTATCCTCTC 59.372 57.143 0.00 0.00 0.00 3.20
216 217 1.224120 TCCATCCCAGCCTTATCCTCT 59.776 52.381 0.00 0.00 0.00 3.69
217 218 1.734655 TCCATCCCAGCCTTATCCTC 58.265 55.000 0.00 0.00 0.00 3.71
218 219 2.212752 TTCCATCCCAGCCTTATCCT 57.787 50.000 0.00 0.00 0.00 3.24
219 220 2.868899 CTTTCCATCCCAGCCTTATCC 58.131 52.381 0.00 0.00 0.00 2.59
220 221 2.234143 GCTTTCCATCCCAGCCTTATC 58.766 52.381 0.00 0.00 0.00 1.75
221 222 1.477558 CGCTTTCCATCCCAGCCTTAT 60.478 52.381 0.00 0.00 0.00 1.73
222 223 0.107214 CGCTTTCCATCCCAGCCTTA 60.107 55.000 0.00 0.00 0.00 2.69
223 224 1.379044 CGCTTTCCATCCCAGCCTT 60.379 57.895 0.00 0.00 0.00 4.35
224 225 2.273449 CGCTTTCCATCCCAGCCT 59.727 61.111 0.00 0.00 0.00 4.58
225 226 2.830370 CCGCTTTCCATCCCAGCC 60.830 66.667 0.00 0.00 0.00 4.85
226 227 2.044946 ACCGCTTTCCATCCCAGC 60.045 61.111 0.00 0.00 0.00 4.85
227 228 0.745845 CTCACCGCTTTCCATCCCAG 60.746 60.000 0.00 0.00 0.00 4.45
228 229 1.299648 CTCACCGCTTTCCATCCCA 59.700 57.895 0.00 0.00 0.00 4.37
229 230 2.115291 GCTCACCGCTTTCCATCCC 61.115 63.158 0.00 0.00 35.14 3.85
230 231 2.115291 GGCTCACCGCTTTCCATCC 61.115 63.158 0.00 0.00 39.13 3.51
231 232 3.502572 GGCTCACCGCTTTCCATC 58.497 61.111 0.00 0.00 39.13 3.51
261 262 0.664761 GCCTATCCACTACACGCGTA 59.335 55.000 13.44 0.00 0.00 4.42
262 263 1.436336 GCCTATCCACTACACGCGT 59.564 57.895 5.58 5.58 0.00 6.01
263 264 1.657487 CGCCTATCCACTACACGCG 60.657 63.158 3.53 3.53 0.00 6.01
264 265 0.594284 GTCGCCTATCCACTACACGC 60.594 60.000 0.00 0.00 0.00 5.34
265 266 0.316772 CGTCGCCTATCCACTACACG 60.317 60.000 0.00 0.00 0.00 4.49
266 267 0.594284 GCGTCGCCTATCCACTACAC 60.594 60.000 5.75 0.00 0.00 2.90
267 268 1.033202 TGCGTCGCCTATCCACTACA 61.033 55.000 15.88 0.00 0.00 2.74
268 269 0.594284 GTGCGTCGCCTATCCACTAC 60.594 60.000 15.88 0.00 0.00 2.73
269 270 1.033202 TGTGCGTCGCCTATCCACTA 61.033 55.000 15.88 0.00 0.00 2.74
270 271 2.348104 TGTGCGTCGCCTATCCACT 61.348 57.895 15.88 0.00 0.00 4.00
271 272 2.165301 GTGTGCGTCGCCTATCCAC 61.165 63.158 15.88 9.64 0.00 4.02
272 273 2.183300 GTGTGCGTCGCCTATCCA 59.817 61.111 15.88 0.68 0.00 3.41
273 274 2.954868 CGTGTGCGTCGCCTATCC 60.955 66.667 15.88 0.00 0.00 2.59
274 275 3.617538 GCGTGTGCGTCGCCTATC 61.618 66.667 15.88 3.44 46.61 2.08
284 285 3.075998 CTCATCTCACGCGTGTGC 58.924 61.111 35.74 0.00 46.01 4.57
286 287 2.504899 CGCTCATCTCACGCGTGT 60.505 61.111 35.74 17.06 41.78 4.49
292 293 3.558411 GTGCGGCGCTCATCTCAC 61.558 66.667 33.26 16.90 0.00 3.51
294 295 4.854784 TCGTGCGGCGCTCATCTC 62.855 66.667 33.26 14.18 41.07 2.75
295 296 4.212913 ATCGTGCGGCGCTCATCT 62.213 61.111 33.26 13.26 41.07 2.90
296 297 3.696426 GATCGTGCGGCGCTCATC 61.696 66.667 33.26 25.73 41.07 2.92
305 306 1.273887 GATCAAAGCCGATCGTGCG 59.726 57.895 15.09 0.00 32.97 5.34
310 311 1.273887 CGTGCGATCAAAGCCGATC 59.726 57.895 0.00 0.00 38.76 3.69
311 312 2.173669 CCGTGCGATCAAAGCCGAT 61.174 57.895 0.00 0.00 32.73 4.18
312 313 2.813474 CCGTGCGATCAAAGCCGA 60.813 61.111 0.00 0.00 32.73 5.54
313 314 4.520846 GCCGTGCGATCAAAGCCG 62.521 66.667 0.00 0.00 0.00 5.52
314 315 1.766143 CTAGCCGTGCGATCAAAGCC 61.766 60.000 0.00 0.00 0.00 4.35
315 316 1.638467 CTAGCCGTGCGATCAAAGC 59.362 57.895 0.00 0.00 0.00 3.51
316 317 1.638467 GCTAGCCGTGCGATCAAAG 59.362 57.895 2.29 0.00 0.00 2.77
317 318 3.794270 GCTAGCCGTGCGATCAAA 58.206 55.556 2.29 0.00 0.00 2.69
325 326 3.909258 AACCGTGTCGCTAGCCGTG 62.909 63.158 9.66 3.93 38.35 4.94
326 327 1.865788 TAAACCGTGTCGCTAGCCGT 61.866 55.000 9.66 0.00 38.35 5.68
327 328 1.153978 TAAACCGTGTCGCTAGCCG 60.154 57.895 9.66 6.64 38.61 5.52
328 329 1.408474 CGTAAACCGTGTCGCTAGCC 61.408 60.000 9.66 0.00 0.00 3.93
329 330 1.986154 CGTAAACCGTGTCGCTAGC 59.014 57.895 4.06 4.06 0.00 3.42
330 331 1.726845 CGCGTAAACCGTGTCGCTAG 61.727 60.000 0.00 0.00 45.25 3.42
331 332 1.797143 CGCGTAAACCGTGTCGCTA 60.797 57.895 0.00 0.00 45.25 4.26
332 333 3.101428 CGCGTAAACCGTGTCGCT 61.101 61.111 0.00 0.00 45.25 4.93
333 334 3.051171 CTCGCGTAAACCGTGTCGC 62.051 63.158 5.77 0.00 46.91 5.19
334 335 2.430942 CCTCGCGTAAACCGTGTCG 61.431 63.158 5.77 0.00 46.91 4.35
335 336 2.723719 GCCTCGCGTAAACCGTGTC 61.724 63.158 5.77 0.00 46.91 3.67
336 337 2.735857 GCCTCGCGTAAACCGTGT 60.736 61.111 5.77 0.00 46.91 4.49
338 339 1.594836 TTTGCCTCGCGTAAACCGT 60.595 52.632 5.77 0.00 39.32 4.83
339 340 1.154543 GTTTGCCTCGCGTAAACCG 60.155 57.895 5.77 0.00 40.16 4.44
340 341 0.519961 ATGTTTGCCTCGCGTAAACC 59.480 50.000 19.61 9.20 44.01 3.27
341 342 1.195900 TGATGTTTGCCTCGCGTAAAC 59.804 47.619 5.77 13.79 44.64 2.01
342 343 1.463056 CTGATGTTTGCCTCGCGTAAA 59.537 47.619 5.77 1.19 0.00 2.01
343 344 1.075542 CTGATGTTTGCCTCGCGTAA 58.924 50.000 5.77 0.00 0.00 3.18
344 345 0.037697 ACTGATGTTTGCCTCGCGTA 60.038 50.000 5.77 0.00 0.00 4.42
345 346 1.291877 GACTGATGTTTGCCTCGCGT 61.292 55.000 5.77 0.00 0.00 6.01
346 347 1.421485 GACTGATGTTTGCCTCGCG 59.579 57.895 0.00 0.00 0.00 5.87
347 348 1.421485 CGACTGATGTTTGCCTCGC 59.579 57.895 0.00 0.00 0.00 5.03
348 349 0.670546 ACCGACTGATGTTTGCCTCG 60.671 55.000 0.00 0.00 0.00 4.63
349 350 1.523758 AACCGACTGATGTTTGCCTC 58.476 50.000 0.00 0.00 0.00 4.70
350 351 1.880027 GAAACCGACTGATGTTTGCCT 59.120 47.619 0.00 0.00 34.97 4.75
351 352 1.606668 TGAAACCGACTGATGTTTGCC 59.393 47.619 0.00 0.00 34.97 4.52
352 353 3.347958 TTGAAACCGACTGATGTTTGC 57.652 42.857 0.00 0.00 34.97 3.68
353 354 4.667262 TGTTTGAAACCGACTGATGTTTG 58.333 39.130 5.50 0.00 34.97 2.93
354 355 4.974368 TGTTTGAAACCGACTGATGTTT 57.026 36.364 5.50 0.00 37.39 2.83
355 356 4.974368 TTGTTTGAAACCGACTGATGTT 57.026 36.364 5.50 0.00 0.00 2.71
356 357 4.668289 GTTTGTTTGAAACCGACTGATGT 58.332 39.130 5.50 0.00 0.00 3.06
357 358 3.723764 CGTTTGTTTGAAACCGACTGATG 59.276 43.478 5.50 0.00 0.00 3.07
358 359 3.623960 TCGTTTGTTTGAAACCGACTGAT 59.376 39.130 5.50 0.00 0.00 2.90
359 360 3.001414 TCGTTTGTTTGAAACCGACTGA 58.999 40.909 5.50 4.18 0.00 3.41
360 361 3.392769 TCGTTTGTTTGAAACCGACTG 57.607 42.857 5.50 2.18 0.00 3.51
361 362 4.625972 AATCGTTTGTTTGAAACCGACT 57.374 36.364 9.41 0.00 0.00 4.18
362 363 4.205588 GGAAATCGTTTGTTTGAAACCGAC 59.794 41.667 9.41 5.68 0.00 4.79
363 364 4.096682 AGGAAATCGTTTGTTTGAAACCGA 59.903 37.500 5.50 7.87 0.00 4.69
364 365 4.356289 AGGAAATCGTTTGTTTGAAACCG 58.644 39.130 5.50 2.37 0.00 4.44
365 366 5.579119 ACAAGGAAATCGTTTGTTTGAAACC 59.421 36.000 5.50 0.00 0.00 3.27
366 367 6.530181 AGACAAGGAAATCGTTTGTTTGAAAC 59.470 34.615 0.14 0.14 0.00 2.78
367 368 6.626302 AGACAAGGAAATCGTTTGTTTGAAA 58.374 32.000 4.23 0.00 0.00 2.69
368 369 6.202516 AGACAAGGAAATCGTTTGTTTGAA 57.797 33.333 4.23 0.00 0.00 2.69
369 370 5.828299 AGACAAGGAAATCGTTTGTTTGA 57.172 34.783 4.23 0.00 0.00 2.69
370 371 8.574196 AATTAGACAAGGAAATCGTTTGTTTG 57.426 30.769 4.23 0.00 0.00 2.93
376 377 9.449719 ACTGATAAATTAGACAAGGAAATCGTT 57.550 29.630 0.00 0.00 0.00 3.85
383 384 9.582431 CGACTTTACTGATAAATTAGACAAGGA 57.418 33.333 0.00 0.00 29.85 3.36
384 385 8.818057 CCGACTTTACTGATAAATTAGACAAGG 58.182 37.037 0.00 0.00 29.85 3.61
385 386 9.582431 TCCGACTTTACTGATAAATTAGACAAG 57.418 33.333 0.00 0.00 29.85 3.16
394 395 8.938906 GGTAAACAATCCGACTTTACTGATAAA 58.061 33.333 0.00 0.00 32.97 1.40
395 396 7.550196 GGGTAAACAATCCGACTTTACTGATAA 59.450 37.037 0.00 0.00 32.97 1.75
396 397 7.043565 GGGTAAACAATCCGACTTTACTGATA 58.956 38.462 0.00 0.00 32.97 2.15
397 398 5.878669 GGGTAAACAATCCGACTTTACTGAT 59.121 40.000 0.00 0.00 32.97 2.90
398 399 5.221682 TGGGTAAACAATCCGACTTTACTGA 60.222 40.000 0.00 0.00 32.97 3.41
399 400 4.998672 TGGGTAAACAATCCGACTTTACTG 59.001 41.667 0.00 0.00 32.97 2.74
400 401 5.012354 TCTGGGTAAACAATCCGACTTTACT 59.988 40.000 0.00 0.00 32.97 2.24
401 402 5.240121 TCTGGGTAAACAATCCGACTTTAC 58.760 41.667 0.00 0.00 32.03 2.01
494 495 2.273370 TCTCGGAAGTGTATTGTCGC 57.727 50.000 0.00 0.00 0.00 5.19
502 517 1.763968 TGGATCGATCTCGGAAGTGT 58.236 50.000 23.96 0.00 40.29 3.55
526 541 2.450886 AGGGAAGGGGAAGTTTCATTGT 59.549 45.455 0.00 0.00 0.00 2.71
561 576 4.387862 GCTGGAAAGAAGTTTCATTGCATG 59.612 41.667 4.86 0.00 43.52 4.06
610 634 5.874810 CCGTCCAAATCTGAAACTGAGAATA 59.125 40.000 0.00 0.00 0.00 1.75
632 656 4.033776 TGCAGGCCTTCCTTCCCG 62.034 66.667 0.00 0.00 41.93 5.14
690 714 0.106918 ACGAGCTCTCCCAGGAGTAG 60.107 60.000 12.85 10.32 42.49 2.57
992 1031 2.887568 CCAGAGCCATCGACGCAC 60.888 66.667 8.86 2.73 0.00 5.34
1201 1264 3.183574 TCACGAACAAACGCATACAGAAG 59.816 43.478 0.00 0.00 36.70 2.85
1206 1269 2.556806 GTGTCACGAACAAACGCATAC 58.443 47.619 0.00 0.00 40.31 2.39
1229 1301 2.351097 CACACACACACAAGCGCG 60.351 61.111 0.00 0.00 0.00 6.86
1239 1311 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1247 1319 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1248 1320 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1249 1321 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1250 1322 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1251 1323 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1252 1324 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1253 1325 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1254 1326 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1255 1327 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1256 1328 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1257 1329 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1258 1330 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1259 1331 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
1260 1332 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1261 1333 0.321122 TCTGCACACACACACACACA 60.321 50.000 0.00 0.00 0.00 3.72
1262 1334 0.374758 CTCTGCACACACACACACAC 59.625 55.000 0.00 0.00 0.00 3.82
1263 1335 0.036483 ACTCTGCACACACACACACA 60.036 50.000 0.00 0.00 0.00 3.72
1264 1336 1.062587 GAACTCTGCACACACACACAC 59.937 52.381 0.00 0.00 0.00 3.82
1265 1337 1.338579 TGAACTCTGCACACACACACA 60.339 47.619 0.00 0.00 0.00 3.72
1266 1338 1.368641 TGAACTCTGCACACACACAC 58.631 50.000 0.00 0.00 0.00 3.82
1267 1339 2.009051 CTTGAACTCTGCACACACACA 58.991 47.619 0.00 0.00 0.00 3.72
1268 1340 2.009774 ACTTGAACTCTGCACACACAC 58.990 47.619 0.00 0.00 0.00 3.82
1269 1341 2.401583 ACTTGAACTCTGCACACACA 57.598 45.000 0.00 0.00 0.00 3.72
1270 1342 3.194861 TGTACTTGAACTCTGCACACAC 58.805 45.455 0.00 0.00 0.00 3.82
1271 1343 3.535280 TGTACTTGAACTCTGCACACA 57.465 42.857 0.00 0.00 0.00 3.72
1272 1344 3.302480 CGTTGTACTTGAACTCTGCACAC 60.302 47.826 0.00 0.00 0.00 3.82
1273 1345 2.863740 CGTTGTACTTGAACTCTGCACA 59.136 45.455 0.00 0.00 0.00 4.57
1274 1346 2.221055 CCGTTGTACTTGAACTCTGCAC 59.779 50.000 0.00 0.00 0.00 4.57
1480 1580 7.221450 TGACAAAACAGGTAGCTATAAACACT 58.779 34.615 0.00 0.00 0.00 3.55
1483 1583 8.015658 CAGTTGACAAAACAGGTAGCTATAAAC 58.984 37.037 0.00 0.00 0.00 2.01
1484 1584 7.308348 GCAGTTGACAAAACAGGTAGCTATAAA 60.308 37.037 0.00 0.00 0.00 1.40
1485 1585 6.148811 GCAGTTGACAAAACAGGTAGCTATAA 59.851 38.462 0.00 0.00 0.00 0.98
1486 1586 5.642063 GCAGTTGACAAAACAGGTAGCTATA 59.358 40.000 0.00 0.00 0.00 1.31
1495 1605 4.923893 TCTGAATGCAGTTGACAAAACAG 58.076 39.130 0.00 0.00 42.84 3.16
1502 1612 3.341823 ACCTGATCTGAATGCAGTTGAC 58.658 45.455 0.00 0.00 42.84 3.18
1503 1613 3.603532 GACCTGATCTGAATGCAGTTGA 58.396 45.455 0.00 0.00 42.84 3.18
1504 1614 2.350804 CGACCTGATCTGAATGCAGTTG 59.649 50.000 0.00 0.00 42.84 3.16
1505 1615 2.234661 TCGACCTGATCTGAATGCAGTT 59.765 45.455 0.00 0.00 42.84 3.16
1506 1616 1.827344 TCGACCTGATCTGAATGCAGT 59.173 47.619 0.00 0.00 42.84 4.40
1507 1617 2.591571 TCGACCTGATCTGAATGCAG 57.408 50.000 0.00 0.00 43.67 4.41
1522 1632 1.000145 GTCGGAAGCTTTGGATCGAC 59.000 55.000 17.36 17.36 39.73 4.20
1537 1647 4.213482 AGCAAACTAAAAAGCTGTAGTCGG 59.787 41.667 5.68 3.52 35.72 4.79
1569 1679 3.304726 GGAAGCAAACTAGCAGTTGGTTC 60.305 47.826 24.29 24.29 38.66 3.62
1579 1689 6.621613 GGATAAAAACTGGGAAGCAAACTAG 58.378 40.000 0.00 0.00 0.00 2.57
1597 1707 4.002906 AGAACAAGAGTGCACGGATAAA 57.997 40.909 12.01 0.00 0.00 1.40
1598 1708 3.678056 AGAACAAGAGTGCACGGATAA 57.322 42.857 12.01 0.00 0.00 1.75
1600 1710 2.093973 CCTAGAACAAGAGTGCACGGAT 60.094 50.000 12.01 0.00 0.00 4.18
1795 1961 3.068165 TCCGATCGATATATCATGGCACC 59.932 47.826 18.66 0.00 0.00 5.01
1803 1969 6.834959 ATGCAAACATCCGATCGATATATC 57.165 37.500 18.66 2.34 0.00 1.63
1851 2017 8.979574 GGATCTTTATGATGAAACCTTAGTACG 58.020 37.037 0.00 0.00 35.14 3.67
1852 2018 9.832445 TGGATCTTTATGATGAAACCTTAGTAC 57.168 33.333 0.00 0.00 35.14 2.73
1853 2019 9.832445 GTGGATCTTTATGATGAAACCTTAGTA 57.168 33.333 0.00 0.00 35.14 1.82
1854 2020 8.328758 TGTGGATCTTTATGATGAAACCTTAGT 58.671 33.333 0.00 0.00 35.14 2.24
1893 2059 7.277319 GTGGGTACTACTAGCTGTGAAATTTAC 59.723 40.741 0.00 0.00 36.67 2.01
1909 2075 1.753073 ACGGTGCATAGTGGGTACTAC 59.247 52.381 0.00 0.00 41.92 2.73
1910 2076 2.026641 GACGGTGCATAGTGGGTACTA 58.973 52.381 1.64 0.00 43.19 1.82
1911 2077 0.822164 GACGGTGCATAGTGGGTACT 59.178 55.000 1.64 0.00 40.99 2.73
1934 2100 6.981762 ATGTGATCTTCAAGTGCTTAGAAG 57.018 37.500 13.13 13.13 39.98 2.85
1943 2112 4.392047 TGACAGCAATGTGATCTTCAAGT 58.608 39.130 0.00 0.00 0.00 3.16
1956 2125 4.581824 AGTTTGTTCTGACATGACAGCAAT 59.418 37.500 18.71 3.82 37.75 3.56
1959 2128 4.274459 AGAAGTTTGTTCTGACATGACAGC 59.726 41.667 18.71 7.86 37.75 4.40
1973 2142 1.762370 CCTGGGCCAAAAGAAGTTTGT 59.238 47.619 8.04 0.00 44.46 2.83
1974 2143 1.070601 CCCTGGGCCAAAAGAAGTTTG 59.929 52.381 8.04 0.00 45.36 2.93
1976 2145 0.471780 CCCCTGGGCCAAAAGAAGTT 60.472 55.000 8.04 0.00 0.00 2.66
1988 2157 2.358737 GATTATCGCGCCCCTGGG 60.359 66.667 5.50 5.50 38.57 4.45
1996 2165 1.781429 CAAGGACGAGTGATTATCGCG 59.219 52.381 0.00 0.00 43.91 5.87
2013 2182 1.784525 AGCCGAAGAAAGACGACAAG 58.215 50.000 0.00 0.00 0.00 3.16
2156 2325 2.425592 GGCTTTTTGGTGGTGGCC 59.574 61.111 0.00 0.00 0.00 5.36
2159 2328 0.764271 AATGGGGCTTTTTGGTGGTG 59.236 50.000 0.00 0.00 0.00 4.17
2166 2335 1.337118 TTCTCGCAATGGGGCTTTTT 58.663 45.000 0.00 0.00 0.00 1.94
2196 2365 9.743581 ATGCATGTTCATAACCTTATATCATCA 57.256 29.630 0.00 0.00 0.00 3.07
2214 2384 3.057969 TCCTCTGTCGAAATGCATGTT 57.942 42.857 0.00 0.00 0.00 2.71
2280 2513 7.549615 AAACGTAGCTTCTGTTACTTTCTTT 57.450 32.000 0.00 0.00 0.00 2.52
2377 2615 2.507484 CAGCAACATCCTGACTTTGGA 58.493 47.619 0.00 0.00 38.06 3.53
2396 2634 3.570975 ACAATCAATGAAGCAACTGAGCA 59.429 39.130 0.00 0.00 36.85 4.26
2433 2671 0.390603 TCATTCTTGCCGTGGTACCG 60.391 55.000 7.57 0.00 0.00 4.02
2435 2673 3.071479 TCTTTCATTCTTGCCGTGGTAC 58.929 45.455 0.00 0.00 0.00 3.34
2439 2677 2.549754 AGTGTCTTTCATTCTTGCCGTG 59.450 45.455 0.00 0.00 0.00 4.94
2442 2680 2.352127 GGCAGTGTCTTTCATTCTTGCC 60.352 50.000 0.00 0.00 0.00 4.52
2451 2689 1.338579 CCTCTCCTGGCAGTGTCTTTC 60.339 57.143 14.43 0.00 0.00 2.62
2462 2700 4.106925 GGCAGCCACCTCTCCTGG 62.107 72.222 6.55 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.