Multiple sequence alignment - TraesCS6A01G290100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G290100 chr6A 100.000 2213 0 0 1 2213 521857582 521859794 0.000000e+00 4087
1 TraesCS6A01G290100 chr6A 93.366 1417 63 17 301 1698 521880717 521882121 0.000000e+00 2067
2 TraesCS6A01G290100 chr6A 91.186 295 12 4 1 282 521880501 521880794 2.660000e-104 388
3 TraesCS6A01G290100 chr6A 82.026 306 29 8 1829 2110 15540283 15540586 1.020000e-58 237
4 TraesCS6A01G290100 chr6A 90.385 104 10 0 275 378 521857760 521857863 1.070000e-28 137
5 TraesCS6A01G290100 chr6A 90.385 104 10 0 179 282 521857856 521857959 1.070000e-28 137
6 TraesCS6A01G290100 chr6A 77.542 236 45 5 1015 1246 521648900 521648669 3.830000e-28 135
7 TraesCS6A01G290100 chr6D 91.915 1546 79 18 275 1792 379334466 379332939 0.000000e+00 2121
8 TraesCS6A01G290100 chr6D 92.446 278 12 1 23 291 379334622 379334345 2.660000e-104 388
9 TraesCS6A01G290100 chr6D 77.966 236 44 5 1015 1246 379339126 379339357 8.240000e-30 141
10 TraesCS6A01G290100 chr6B 94.626 949 42 1 275 1214 567710957 567711905 0.000000e+00 1461
11 TraesCS6A01G290100 chr6B 87.415 588 40 16 1207 1778 567712489 567713058 0.000000e+00 645
12 TraesCS6A01G290100 chr6B 92.565 269 11 1 23 282 567710801 567711069 5.770000e-101 377
13 TraesCS6A01G290100 chr6B 83.333 306 27 3 1826 2109 136007951 136008254 6.060000e-66 261
14 TraesCS6A01G290100 chr6B 78.814 236 42 5 1015 1246 567611657 567611426 3.810000e-33 152
15 TraesCS6A01G290100 chr6B 78.818 203 36 7 1015 1215 213467273 213467076 1.780000e-26 130
16 TraesCS6A01G290100 chr7B 84.262 305 24 6 1829 2110 413594814 413595117 2.160000e-70 276
17 TraesCS6A01G290100 chr7B 83.934 305 24 7 1830 2110 731129528 731129225 3.620000e-68 268
18 TraesCS6A01G290100 chr7B 80.323 310 28 12 1826 2110 608403961 608404262 1.040000e-48 204
19 TraesCS6A01G290100 chr4A 83.548 310 25 9 1826 2110 664934325 664934017 1.300000e-67 267
20 TraesCS6A01G290100 chr4A 81.315 289 29 10 1829 2094 557872260 557871974 6.190000e-51 211
21 TraesCS6A01G290100 chr3D 82.759 319 32 12 1814 2110 250022603 250022920 1.690000e-66 263
22 TraesCS6A01G290100 chr2D 83.333 270 37 8 1846 2113 543821641 543821904 2.200000e-60 243
23 TraesCS6A01G290100 chr7D 82.201 309 27 8 1826 2110 538671373 538671677 7.900000e-60 241
24 TraesCS6A01G290100 chr2A 82.026 306 28 8 1834 2114 622700163 622699860 3.670000e-58 235
25 TraesCS6A01G290100 chr3A 92.453 159 12 0 1952 2110 587890768 587890610 6.150000e-56 228
26 TraesCS6A01G290100 chr7A 81.373 306 30 8 1830 2110 76116847 76117150 7.950000e-55 224
27 TraesCS6A01G290100 chr7A 81.696 224 33 6 1826 2044 632382633 632382853 1.750000e-41 180
28 TraesCS6A01G290100 chr1A 78.498 293 52 9 1824 2110 30271454 30271167 4.850000e-42 182
29 TraesCS6A01G290100 chr4B 91.667 120 8 2 1832 1951 538389655 538389538 4.890000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G290100 chr6A 521857582 521859794 2212 False 1453.666667 4087 93.590000 1 2213 3 chr6A.!!$F2 2212
1 TraesCS6A01G290100 chr6A 521880501 521882121 1620 False 1227.500000 2067 92.276000 1 1698 2 chr6A.!!$F3 1697
2 TraesCS6A01G290100 chr6D 379332939 379334622 1683 True 1254.500000 2121 92.180500 23 1792 2 chr6D.!!$R1 1769
3 TraesCS6A01G290100 chr6B 567710801 567713058 2257 False 827.666667 1461 91.535333 23 1778 3 chr6B.!!$F2 1755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 317 0.109272 TCTCGTCCATCAGCACGAAC 60.109 55.0 0.0 0.0 44.08 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2583 0.098728 GCCTTGTCGTAAATGCGCAT 59.901 50.0 19.28 19.28 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 263 3.240134 GAACTCCTCCACCTGCGCA 62.240 63.158 10.98 10.98 0.00 6.09
242 264 3.245668 AACTCCTCCACCTGCGCAG 62.246 63.158 30.52 30.52 0.00 5.18
261 283 4.353437 GTGGAACGCGACCTCGGT 62.353 66.667 15.93 0.00 40.23 4.69
262 284 4.047059 TGGAACGCGACCTCGGTC 62.047 66.667 15.93 6.01 44.80 4.79
263 285 3.745803 GGAACGCGACCTCGGTCT 61.746 66.667 15.93 0.00 44.88 3.85
264 286 2.202453 GAACGCGACCTCGGTCTC 60.202 66.667 15.93 5.33 42.46 3.36
265 287 3.680338 GAACGCGACCTCGGTCTCC 62.680 68.421 15.93 4.44 42.46 3.71
282 304 2.795297 CGGAGGACTGCTCTCGTC 59.205 66.667 0.00 0.00 32.34 4.20
288 310 3.639162 GACTGCTCTCGTCCATCAG 57.361 57.895 0.00 0.00 0.00 2.90
289 311 0.527385 GACTGCTCTCGTCCATCAGC 60.527 60.000 0.00 0.00 0.00 4.26
290 312 1.253593 ACTGCTCTCGTCCATCAGCA 61.254 55.000 0.00 0.00 39.58 4.41
291 313 0.805322 CTGCTCTCGTCCATCAGCAC 60.805 60.000 0.00 0.00 36.96 4.40
292 314 1.875813 GCTCTCGTCCATCAGCACG 60.876 63.158 0.00 0.00 37.36 5.34
293 315 1.803289 CTCTCGTCCATCAGCACGA 59.197 57.895 0.00 0.00 42.61 4.35
294 316 0.171231 CTCTCGTCCATCAGCACGAA 59.829 55.000 0.00 0.00 44.08 3.85
295 317 0.109272 TCTCGTCCATCAGCACGAAC 60.109 55.000 0.00 0.00 44.08 3.95
296 318 1.078759 CTCGTCCATCAGCACGAACC 61.079 60.000 0.00 0.00 44.08 3.62
297 319 1.079819 CGTCCATCAGCACGAACCT 60.080 57.895 0.00 0.00 38.32 3.50
298 320 1.078759 CGTCCATCAGCACGAACCTC 61.079 60.000 0.00 0.00 38.32 3.85
299 321 0.741221 GTCCATCAGCACGAACCTCC 60.741 60.000 0.00 0.00 0.00 4.30
300 322 1.450312 CCATCAGCACGAACCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
301 323 1.450312 CATCAGCACGAACCTCCCC 60.450 63.158 0.00 0.00 0.00 4.81
302 324 3.019003 ATCAGCACGAACCTCCCCG 62.019 63.158 0.00 0.00 0.00 5.73
323 345 4.052229 CCGACGCGGTCCAGAACT 62.052 66.667 12.47 0.00 42.73 3.01
324 346 2.504244 CGACGCGGTCCAGAACTC 60.504 66.667 12.47 0.00 0.00 3.01
325 347 2.126031 GACGCGGTCCAGAACTCC 60.126 66.667 12.47 0.00 0.00 3.85
326 348 2.600769 ACGCGGTCCAGAACTCCT 60.601 61.111 12.47 0.00 0.00 3.69
327 349 2.182030 CGCGGTCCAGAACTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
328 350 2.579738 GCGGTCCAGAACTCCTCC 59.420 66.667 0.00 0.00 0.00 4.30
329 351 2.283529 GCGGTCCAGAACTCCTCCA 61.284 63.158 0.00 0.00 0.00 3.86
330 352 1.592223 CGGTCCAGAACTCCTCCAC 59.408 63.158 0.00 0.00 0.00 4.02
331 353 1.889530 CGGTCCAGAACTCCTCCACC 61.890 65.000 0.00 0.00 0.00 4.61
332 354 0.545548 GGTCCAGAACTCCTCCACCT 60.546 60.000 0.00 0.00 0.00 4.00
333 355 0.610687 GTCCAGAACTCCTCCACCTG 59.389 60.000 0.00 0.00 0.00 4.00
334 356 1.194781 TCCAGAACTCCTCCACCTGC 61.195 60.000 0.00 0.00 0.00 4.85
335 357 1.079543 CAGAACTCCTCCACCTGCG 60.080 63.158 0.00 0.00 0.00 5.18
336 358 2.435059 GAACTCCTCCACCTGCGC 60.435 66.667 0.00 0.00 0.00 6.09
424 446 1.203994 CAGTTTCCTCCGTCGTACCAT 59.796 52.381 0.00 0.00 0.00 3.55
1321 1943 2.284921 CAGTGGAGGAGGCCAGGA 60.285 66.667 5.01 0.00 38.95 3.86
1324 1946 1.690633 GTGGAGGAGGCCAGGATGA 60.691 63.158 5.01 0.00 39.69 2.92
1467 2089 0.252148 TGGGCTTCATTGCATCCCAA 60.252 50.000 0.00 0.00 43.47 4.12
1469 2091 1.134610 GGGCTTCATTGCATCCCAAAG 60.135 52.381 0.00 0.00 36.92 2.77
1470 2092 1.826720 GGCTTCATTGCATCCCAAAGA 59.173 47.619 0.00 0.00 36.92 2.52
1472 2094 2.417787 GCTTCATTGCATCCCAAAGACC 60.418 50.000 0.00 0.00 36.92 3.85
1475 2097 1.901159 CATTGCATCCCAAAGACCCAA 59.099 47.619 0.00 0.00 36.92 4.12
1476 2098 2.094100 TTGCATCCCAAAGACCCAAA 57.906 45.000 0.00 0.00 0.00 3.28
1477 2099 1.337118 TGCATCCCAAAGACCCAAAC 58.663 50.000 0.00 0.00 0.00 2.93
1478 2100 1.133199 TGCATCCCAAAGACCCAAACT 60.133 47.619 0.00 0.00 0.00 2.66
1479 2101 1.546029 GCATCCCAAAGACCCAAACTC 59.454 52.381 0.00 0.00 0.00 3.01
1480 2102 2.875296 CATCCCAAAGACCCAAACTCA 58.125 47.619 0.00 0.00 0.00 3.41
1481 2103 2.358322 TCCCAAAGACCCAAACTCAC 57.642 50.000 0.00 0.00 0.00 3.51
1482 2104 1.133606 TCCCAAAGACCCAAACTCACC 60.134 52.381 0.00 0.00 0.00 4.02
1483 2105 0.951558 CCAAAGACCCAAACTCACCG 59.048 55.000 0.00 0.00 0.00 4.94
1500 2124 3.071580 CGGGAGGCAGATTCAGTTC 57.928 57.895 0.00 0.00 0.00 3.01
1509 2134 3.119708 GGCAGATTCAGTTCATGGTTCAC 60.120 47.826 0.00 0.00 0.00 3.18
1553 2190 7.067981 GGAGATCTGGAATAATTTTGCTGTCTT 59.932 37.037 0.00 0.00 0.00 3.01
1575 2212 0.602638 TGGACGAACATGTGCCACTC 60.603 55.000 0.00 0.00 0.00 3.51
1577 2214 1.626654 GACGAACATGTGCCACTCGG 61.627 60.000 18.24 0.00 33.89 4.63
1632 2270 6.315393 GTCAACACTTTGAGTACTTTTCTCCA 59.685 38.462 0.00 0.00 42.60 3.86
1656 2297 3.240134 AACGACGTGCTCTGCCCAT 62.240 57.895 0.00 0.00 0.00 4.00
1669 2310 1.002888 CTGCCCATCGAGATAGCCATT 59.997 52.381 0.00 0.00 0.00 3.16
1684 2325 2.159382 GCCATTCCGTCTTTCCTGAAA 58.841 47.619 0.00 0.00 0.00 2.69
1687 2328 4.546570 CCATTCCGTCTTTCCTGAAAAAC 58.453 43.478 0.00 0.00 0.00 2.43
1717 2358 1.799403 CGTATCGGATCGACTAGCTGT 59.201 52.381 0.00 0.00 39.18 4.40
1729 2370 6.414408 TCGACTAGCTGTAGTACTACAAAC 57.586 41.667 30.31 25.04 44.47 2.93
1761 2403 2.593346 AATCTAGCGTCTCCTGCAAG 57.407 50.000 0.00 0.00 33.85 4.01
1781 2423 1.068434 GGGCTCTCCATTCTTCTCTCG 59.932 57.143 0.00 0.00 35.00 4.04
1782 2424 1.754226 GGCTCTCCATTCTTCTCTCGT 59.246 52.381 0.00 0.00 0.00 4.18
1788 2430 1.472376 CCATTCTTCTCTCGTGCCTCC 60.472 57.143 0.00 0.00 0.00 4.30
1792 2434 0.174617 CTTCTCTCGTGCCTCCCTTC 59.825 60.000 0.00 0.00 0.00 3.46
1793 2435 1.258445 TTCTCTCGTGCCTCCCTTCC 61.258 60.000 0.00 0.00 0.00 3.46
1794 2436 2.683933 TCTCGTGCCTCCCTTCCC 60.684 66.667 0.00 0.00 0.00 3.97
1795 2437 2.685380 CTCGTGCCTCCCTTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
1796 2438 2.203938 TCGTGCCTCCCTTCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
1797 2439 2.045926 CGTGCCTCCCTTCCCTTG 60.046 66.667 0.00 0.00 0.00 3.61
1798 2440 2.361737 GTGCCTCCCTTCCCTTGC 60.362 66.667 0.00 0.00 0.00 4.01
1799 2441 2.858476 TGCCTCCCTTCCCTTGCA 60.858 61.111 0.00 0.00 0.00 4.08
1800 2442 2.240918 TGCCTCCCTTCCCTTGCAT 61.241 57.895 0.00 0.00 0.00 3.96
1801 2443 1.000866 GCCTCCCTTCCCTTGCATT 59.999 57.895 0.00 0.00 0.00 3.56
1802 2444 0.258774 GCCTCCCTTCCCTTGCATTA 59.741 55.000 0.00 0.00 0.00 1.90
1803 2445 1.752084 GCCTCCCTTCCCTTGCATTAG 60.752 57.143 0.00 0.00 0.00 1.73
1804 2446 1.846439 CCTCCCTTCCCTTGCATTAGA 59.154 52.381 0.00 0.00 0.00 2.10
1805 2447 2.158696 CCTCCCTTCCCTTGCATTAGAG 60.159 54.545 0.00 0.00 0.00 2.43
1806 2448 1.212935 TCCCTTCCCTTGCATTAGAGC 59.787 52.381 0.00 0.00 0.00 4.09
1807 2449 1.064463 CCCTTCCCTTGCATTAGAGCA 60.064 52.381 0.00 0.00 43.99 4.26
1808 2450 2.423947 CCCTTCCCTTGCATTAGAGCAT 60.424 50.000 0.00 0.00 45.19 3.79
1809 2451 2.883386 CCTTCCCTTGCATTAGAGCATC 59.117 50.000 0.00 0.00 45.19 3.91
1829 2471 9.989869 GAGCATCTTCAATGAATGATGTATATG 57.010 33.333 23.25 9.91 38.03 1.78
1830 2472 8.459635 AGCATCTTCAATGAATGATGTATATGC 58.540 33.333 23.25 15.71 39.13 3.14
1831 2473 7.428472 GCATCTTCAATGAATGATGTATATGCG 59.572 37.037 23.25 8.02 38.03 4.73
1832 2474 8.662141 CATCTTCAATGAATGATGTATATGCGA 58.338 33.333 18.58 2.69 38.03 5.10
1833 2475 8.606040 TCTTCAATGAATGATGTATATGCGAA 57.394 30.769 0.00 0.00 38.03 4.70
1834 2476 8.498358 TCTTCAATGAATGATGTATATGCGAAC 58.502 33.333 0.00 0.00 38.03 3.95
1835 2477 7.132694 TCAATGAATGATGTATATGCGAACC 57.867 36.000 0.00 0.00 31.50 3.62
1836 2478 6.709846 TCAATGAATGATGTATATGCGAACCA 59.290 34.615 0.00 0.00 31.50 3.67
1837 2479 7.228308 TCAATGAATGATGTATATGCGAACCAA 59.772 33.333 0.00 0.00 31.50 3.67
1838 2480 6.299023 TGAATGATGTATATGCGAACCAAC 57.701 37.500 0.00 0.00 0.00 3.77
1839 2481 5.819901 TGAATGATGTATATGCGAACCAACA 59.180 36.000 0.00 0.00 0.00 3.33
1840 2482 6.486320 TGAATGATGTATATGCGAACCAACAT 59.514 34.615 0.00 0.00 0.00 2.71
1841 2483 5.671742 TGATGTATATGCGAACCAACATG 57.328 39.130 0.00 0.00 0.00 3.21
1842 2484 5.122519 TGATGTATATGCGAACCAACATGT 58.877 37.500 0.00 0.00 0.00 3.21
1843 2485 6.284459 TGATGTATATGCGAACCAACATGTA 58.716 36.000 0.00 0.00 0.00 2.29
1844 2486 6.423604 TGATGTATATGCGAACCAACATGTAG 59.576 38.462 0.00 0.00 0.00 2.74
1845 2487 5.666462 TGTATATGCGAACCAACATGTAGT 58.334 37.500 0.00 0.00 0.00 2.73
1846 2488 6.110033 TGTATATGCGAACCAACATGTAGTT 58.890 36.000 12.63 12.63 42.42 2.24
1860 2502 5.745227 ACATGTAGTTGAATGGTTAGAGGG 58.255 41.667 0.00 0.00 0.00 4.30
1861 2503 5.487488 ACATGTAGTTGAATGGTTAGAGGGA 59.513 40.000 0.00 0.00 0.00 4.20
1862 2504 5.416271 TGTAGTTGAATGGTTAGAGGGAC 57.584 43.478 0.00 0.00 0.00 4.46
1864 2506 4.559862 AGTTGAATGGTTAGAGGGACTG 57.440 45.455 0.00 0.00 41.55 3.51
1865 2507 3.910627 AGTTGAATGGTTAGAGGGACTGT 59.089 43.478 0.00 0.00 41.55 3.55
1866 2508 3.981071 TGAATGGTTAGAGGGACTGTG 57.019 47.619 0.00 0.00 41.55 3.66
1867 2509 2.571653 TGAATGGTTAGAGGGACTGTGG 59.428 50.000 0.00 0.00 41.55 4.17
1868 2510 2.344093 ATGGTTAGAGGGACTGTGGT 57.656 50.000 0.00 0.00 41.55 4.16
1869 2511 3.484953 ATGGTTAGAGGGACTGTGGTA 57.515 47.619 0.00 0.00 41.55 3.25
1870 2512 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
1871 2513 3.798515 TGGTTAGAGGGACTGTGGTATT 58.201 45.455 0.00 0.00 41.55 1.89
1872 2514 3.773119 TGGTTAGAGGGACTGTGGTATTC 59.227 47.826 0.00 0.00 41.55 1.75
1873 2515 3.134262 GGTTAGAGGGACTGTGGTATTCC 59.866 52.174 0.00 0.00 41.55 3.01
1874 2516 1.880941 AGAGGGACTGTGGTATTCCC 58.119 55.000 0.00 0.00 46.22 3.97
1877 2519 0.107165 GGGACTGTGGTATTCCCAGC 60.107 60.000 0.76 1.96 46.45 4.85
1878 2520 0.107165 GGACTGTGGTATTCCCAGCC 60.107 60.000 6.73 5.99 46.45 4.85
1879 2521 0.107165 GACTGTGGTATTCCCAGCCC 60.107 60.000 6.73 0.00 46.45 5.19
1880 2522 0.844661 ACTGTGGTATTCCCAGCCCA 60.845 55.000 6.73 0.00 46.45 5.36
1881 2523 0.552848 CTGTGGTATTCCCAGCCCAT 59.447 55.000 0.00 0.00 46.45 4.00
1882 2524 0.550914 TGTGGTATTCCCAGCCCATC 59.449 55.000 0.00 0.00 46.45 3.51
1883 2525 0.550914 GTGGTATTCCCAGCCCATCA 59.449 55.000 0.00 0.00 46.45 3.07
1884 2526 0.846015 TGGTATTCCCAGCCCATCAG 59.154 55.000 0.00 0.00 38.72 2.90
1885 2527 0.111253 GGTATTCCCAGCCCATCAGG 59.889 60.000 0.00 0.00 39.47 3.86
1899 2541 4.460948 CCATCAGGGTTTCAAATCTTGG 57.539 45.455 0.00 0.00 0.00 3.61
1900 2542 3.834231 CCATCAGGGTTTCAAATCTTGGT 59.166 43.478 0.00 0.00 0.00 3.67
1901 2543 4.322198 CCATCAGGGTTTCAAATCTTGGTG 60.322 45.833 0.00 0.00 0.00 4.17
1902 2544 2.627699 TCAGGGTTTCAAATCTTGGTGC 59.372 45.455 0.00 0.00 0.00 5.01
1903 2545 2.629617 CAGGGTTTCAAATCTTGGTGCT 59.370 45.455 0.00 0.00 0.00 4.40
1904 2546 2.893489 AGGGTTTCAAATCTTGGTGCTC 59.107 45.455 0.00 0.00 0.00 4.26
1905 2547 2.351738 GGGTTTCAAATCTTGGTGCTCG 60.352 50.000 0.00 0.00 0.00 5.03
1906 2548 2.319472 GTTTCAAATCTTGGTGCTCGC 58.681 47.619 0.00 0.00 0.00 5.03
1907 2549 1.603456 TTCAAATCTTGGTGCTCGCA 58.397 45.000 0.00 0.00 0.00 5.10
1908 2550 1.825090 TCAAATCTTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
1909 2551 2.161855 TCAAATCTTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
1910 2552 2.557924 TCAAATCTTGGTGCTCGCATTT 59.442 40.909 0.00 0.00 0.00 2.32
1911 2553 3.755905 TCAAATCTTGGTGCTCGCATTTA 59.244 39.130 0.00 0.00 0.00 1.40
1912 2554 4.398988 TCAAATCTTGGTGCTCGCATTTAT 59.601 37.500 0.00 0.00 0.00 1.40
1913 2555 4.989279 AATCTTGGTGCTCGCATTTATT 57.011 36.364 0.00 0.00 0.00 1.40
1914 2556 4.558538 ATCTTGGTGCTCGCATTTATTC 57.441 40.909 0.00 0.00 0.00 1.75
1915 2557 2.682856 TCTTGGTGCTCGCATTTATTCC 59.317 45.455 0.00 0.00 0.00 3.01
1916 2558 1.388547 TGGTGCTCGCATTTATTCCC 58.611 50.000 0.00 0.00 0.00 3.97
1917 2559 0.307760 GGTGCTCGCATTTATTCCCG 59.692 55.000 0.00 0.00 0.00 5.14
1918 2560 1.295792 GTGCTCGCATTTATTCCCGA 58.704 50.000 0.00 0.00 0.00 5.14
1919 2561 1.668751 GTGCTCGCATTTATTCCCGAA 59.331 47.619 0.00 0.00 0.00 4.30
1920 2562 2.290641 GTGCTCGCATTTATTCCCGAAT 59.709 45.455 0.00 0.00 34.93 3.34
1921 2563 2.948979 TGCTCGCATTTATTCCCGAATT 59.051 40.909 0.00 0.00 32.50 2.17
1922 2564 3.380004 TGCTCGCATTTATTCCCGAATTT 59.620 39.130 0.00 0.00 32.50 1.82
1923 2565 4.576873 TGCTCGCATTTATTCCCGAATTTA 59.423 37.500 0.00 0.00 32.50 1.40
1924 2566 5.240623 TGCTCGCATTTATTCCCGAATTTAT 59.759 36.000 0.00 0.00 32.50 1.40
1925 2567 6.149633 GCTCGCATTTATTCCCGAATTTATT 58.850 36.000 0.00 0.00 32.50 1.40
1926 2568 6.640907 GCTCGCATTTATTCCCGAATTTATTT 59.359 34.615 0.00 0.00 32.50 1.40
1927 2569 7.169140 GCTCGCATTTATTCCCGAATTTATTTT 59.831 33.333 0.00 0.00 32.50 1.82
1928 2570 9.672086 CTCGCATTTATTCCCGAATTTATTTTA 57.328 29.630 0.00 0.00 32.50 1.52
1937 2579 9.691362 ATTCCCGAATTTATTTTATGATTTCCG 57.309 29.630 0.00 0.00 0.00 4.30
1938 2580 7.653647 TCCCGAATTTATTTTATGATTTCCGG 58.346 34.615 0.00 0.00 0.00 5.14
1939 2581 6.364976 CCCGAATTTATTTTATGATTTCCGGC 59.635 38.462 0.00 0.00 0.00 6.13
1940 2582 6.087555 CCGAATTTATTTTATGATTTCCGGCG 59.912 38.462 0.00 0.00 0.00 6.46
1941 2583 6.853872 CGAATTTATTTTATGATTTCCGGCGA 59.146 34.615 9.30 0.00 0.00 5.54
1942 2584 7.537306 CGAATTTATTTTATGATTTCCGGCGAT 59.463 33.333 9.30 0.00 0.00 4.58
1943 2585 8.519492 AATTTATTTTATGATTTCCGGCGATG 57.481 30.769 9.30 0.00 0.00 3.84
1944 2586 3.347958 TTTTATGATTTCCGGCGATGC 57.652 42.857 9.30 0.00 0.00 3.91
1945 2587 0.865111 TTATGATTTCCGGCGATGCG 59.135 50.000 9.30 0.00 0.00 4.73
1957 2599 3.867888 CGATGCGCATTTACGACAA 57.132 47.368 26.12 0.00 34.06 3.18
1958 2600 1.718504 CGATGCGCATTTACGACAAG 58.281 50.000 26.12 4.12 34.06 3.16
1959 2601 1.592110 CGATGCGCATTTACGACAAGG 60.592 52.381 26.12 0.48 34.06 3.61
1960 2602 0.098728 ATGCGCATTTACGACAAGGC 59.901 50.000 19.28 0.00 34.06 4.35
1962 2604 4.360101 GCATTTACGACAAGGCGC 57.640 55.556 0.00 0.00 33.86 6.53
1963 2605 1.226295 GCATTTACGACAAGGCGCC 60.226 57.895 21.89 21.89 33.86 6.53
1964 2606 1.644786 GCATTTACGACAAGGCGCCT 61.645 55.000 27.08 27.08 33.86 5.52
1965 2607 1.647346 CATTTACGACAAGGCGCCTA 58.353 50.000 33.07 12.34 33.86 3.93
1966 2608 1.326548 CATTTACGACAAGGCGCCTAC 59.673 52.381 33.07 22.26 33.86 3.18
1967 2609 0.733566 TTTACGACAAGGCGCCTACG 60.734 55.000 32.96 32.96 44.07 3.51
1968 2610 2.546645 TTACGACAAGGCGCCTACGG 62.547 60.000 35.30 27.97 40.57 4.02
1969 2611 4.430765 CGACAAGGCGCCTACGGT 62.431 66.667 33.07 27.34 40.57 4.83
1970 2612 2.813908 GACAAGGCGCCTACGGTG 60.814 66.667 33.07 26.40 40.57 4.94
1971 2613 3.291101 GACAAGGCGCCTACGGTGA 62.291 63.158 33.07 0.00 40.57 4.02
1972 2614 2.813908 CAAGGCGCCTACGGTGAC 60.814 66.667 33.07 0.00 42.50 3.67
1975 2617 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
1976 2618 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
1977 2619 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
1978 2620 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
1979 2621 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
1980 2622 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
1981 2623 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
1982 2624 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
1983 2625 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
1984 2626 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
1985 2627 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
1986 2628 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
1987 2629 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
1988 2630 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
1989 2631 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
1990 2632 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
1991 2633 5.292101 GGTGACTTCGTAAATCTCAAGATGG 59.708 44.000 0.00 0.00 34.49 3.51
1992 2634 5.869888 GTGACTTCGTAAATCTCAAGATGGT 59.130 40.000 0.00 0.00 34.49 3.55
1993 2635 7.033791 GTGACTTCGTAAATCTCAAGATGGTA 58.966 38.462 0.00 0.00 34.49 3.25
1994 2636 7.707035 GTGACTTCGTAAATCTCAAGATGGTAT 59.293 37.037 0.00 0.00 34.49 2.73
1995 2637 7.706607 TGACTTCGTAAATCTCAAGATGGTATG 59.293 37.037 0.00 0.00 34.49 2.39
1996 2638 6.480320 ACTTCGTAAATCTCAAGATGGTATGC 59.520 38.462 0.00 0.00 34.49 3.14
1997 2639 5.297547 TCGTAAATCTCAAGATGGTATGCC 58.702 41.667 0.00 0.00 34.49 4.40
1998 2640 4.150627 CGTAAATCTCAAGATGGTATGCCG 59.849 45.833 0.00 0.00 37.67 5.69
1999 2641 2.847327 ATCTCAAGATGGTATGCCGG 57.153 50.000 0.00 0.00 37.67 6.13
2000 2642 1.788229 TCTCAAGATGGTATGCCGGA 58.212 50.000 5.05 0.00 37.67 5.14
2001 2643 2.329267 TCTCAAGATGGTATGCCGGAT 58.671 47.619 5.05 0.00 37.67 4.18
2002 2644 2.300152 TCTCAAGATGGTATGCCGGATC 59.700 50.000 5.05 0.00 37.67 3.36
2003 2645 2.037641 CTCAAGATGGTATGCCGGATCA 59.962 50.000 5.05 0.00 37.67 2.92
2004 2646 2.037641 TCAAGATGGTATGCCGGATCAG 59.962 50.000 5.05 0.00 37.67 2.90
2005 2647 1.722034 AGATGGTATGCCGGATCAGT 58.278 50.000 5.05 0.00 37.67 3.41
2006 2648 1.620819 AGATGGTATGCCGGATCAGTC 59.379 52.381 5.05 0.00 37.67 3.51
2007 2649 1.620819 GATGGTATGCCGGATCAGTCT 59.379 52.381 5.05 0.00 37.67 3.24
2008 2650 1.496060 TGGTATGCCGGATCAGTCTT 58.504 50.000 5.05 0.00 37.67 3.01
2009 2651 1.837439 TGGTATGCCGGATCAGTCTTT 59.163 47.619 5.05 0.00 37.67 2.52
2010 2652 2.158957 TGGTATGCCGGATCAGTCTTTC 60.159 50.000 5.05 0.00 37.67 2.62
2011 2653 2.128035 GTATGCCGGATCAGTCTTTCG 58.872 52.381 5.05 0.00 0.00 3.46
2012 2654 0.824109 ATGCCGGATCAGTCTTTCGA 59.176 50.000 5.05 0.00 0.00 3.71
2013 2655 0.606096 TGCCGGATCAGTCTTTCGAA 59.394 50.000 5.05 0.00 0.00 3.71
2014 2656 1.281899 GCCGGATCAGTCTTTCGAAG 58.718 55.000 5.05 0.00 0.00 3.79
2015 2657 1.135083 GCCGGATCAGTCTTTCGAAGA 60.135 52.381 5.05 0.00 34.51 2.87
2016 2658 2.482142 GCCGGATCAGTCTTTCGAAGAT 60.482 50.000 5.05 0.00 40.18 2.40
2017 2659 3.119291 CCGGATCAGTCTTTCGAAGATG 58.881 50.000 0.00 0.00 40.18 2.90
2018 2660 2.537625 CGGATCAGTCTTTCGAAGATGC 59.462 50.000 0.00 1.96 40.18 3.91
2019 2661 3.736433 CGGATCAGTCTTTCGAAGATGCT 60.736 47.826 11.98 2.30 40.18 3.79
2020 2662 3.801594 GGATCAGTCTTTCGAAGATGCTC 59.198 47.826 0.00 0.00 40.18 4.26
2021 2663 3.942130 TCAGTCTTTCGAAGATGCTCA 57.058 42.857 0.00 0.00 40.18 4.26
2022 2664 4.462508 TCAGTCTTTCGAAGATGCTCAT 57.537 40.909 0.00 0.00 40.18 2.90
2023 2665 5.582689 TCAGTCTTTCGAAGATGCTCATA 57.417 39.130 0.00 0.00 40.18 2.15
2024 2666 5.586339 TCAGTCTTTCGAAGATGCTCATAG 58.414 41.667 0.00 0.00 40.18 2.23
2025 2667 5.126222 TCAGTCTTTCGAAGATGCTCATAGT 59.874 40.000 0.00 0.00 40.18 2.12
2026 2668 5.231779 CAGTCTTTCGAAGATGCTCATAGTG 59.768 44.000 0.00 0.00 40.18 2.74
2027 2669 4.505922 GTCTTTCGAAGATGCTCATAGTGG 59.494 45.833 0.00 0.00 40.18 4.00
2028 2670 4.160439 TCTTTCGAAGATGCTCATAGTGGT 59.840 41.667 0.00 0.00 35.04 4.16
2029 2671 5.359860 TCTTTCGAAGATGCTCATAGTGGTA 59.640 40.000 0.00 0.00 35.04 3.25
2030 2672 4.837896 TCGAAGATGCTCATAGTGGTAG 57.162 45.455 0.00 0.00 0.00 3.18
2031 2673 3.570125 TCGAAGATGCTCATAGTGGTAGG 59.430 47.826 0.00 0.00 0.00 3.18
2032 2674 3.305676 CGAAGATGCTCATAGTGGTAGGG 60.306 52.174 0.00 0.00 0.00 3.53
2033 2675 3.336509 AGATGCTCATAGTGGTAGGGT 57.663 47.619 0.00 0.00 0.00 4.34
2034 2676 2.968574 AGATGCTCATAGTGGTAGGGTG 59.031 50.000 0.00 0.00 0.00 4.61
2035 2677 2.247699 TGCTCATAGTGGTAGGGTGT 57.752 50.000 0.00 0.00 0.00 4.16
2036 2678 1.831106 TGCTCATAGTGGTAGGGTGTG 59.169 52.381 0.00 0.00 0.00 3.82
2037 2679 1.473434 GCTCATAGTGGTAGGGTGTGC 60.473 57.143 0.00 0.00 0.00 4.57
2038 2680 0.821517 TCATAGTGGTAGGGTGTGCG 59.178 55.000 0.00 0.00 0.00 5.34
2039 2681 0.535335 CATAGTGGTAGGGTGTGCGT 59.465 55.000 0.00 0.00 0.00 5.24
2040 2682 0.535335 ATAGTGGTAGGGTGTGCGTG 59.465 55.000 0.00 0.00 0.00 5.34
2041 2683 0.828762 TAGTGGTAGGGTGTGCGTGT 60.829 55.000 0.00 0.00 0.00 4.49
2042 2684 1.959226 GTGGTAGGGTGTGCGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2043 2685 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
2044 2686 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2045 2687 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
2048 2690 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2049 2691 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2050 2692 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2051 2693 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2052 2694 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2053 2695 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
2054 2696 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
2055 2697 0.787787 GCGTGTGTGCGTTCATAAGA 59.212 50.000 0.00 0.00 0.00 2.10
2056 2698 1.201812 GCGTGTGTGCGTTCATAAGAG 60.202 52.381 0.00 0.00 0.00 2.85
2057 2699 2.058798 CGTGTGTGCGTTCATAAGAGT 58.941 47.619 0.00 0.00 0.00 3.24
2058 2700 2.159973 CGTGTGTGCGTTCATAAGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
2059 2701 3.057019 GTGTGTGCGTTCATAAGAGTGA 58.943 45.455 0.00 0.00 0.00 3.41
2060 2702 3.121944 GTGTGTGCGTTCATAAGAGTGAG 59.878 47.826 0.00 0.00 0.00 3.51
2061 2703 3.243737 TGTGTGCGTTCATAAGAGTGAGT 60.244 43.478 0.00 0.00 0.00 3.41
2062 2704 3.121944 GTGTGCGTTCATAAGAGTGAGTG 59.878 47.826 0.00 0.00 0.00 3.51
2063 2705 3.243737 TGTGCGTTCATAAGAGTGAGTGT 60.244 43.478 0.00 0.00 0.00 3.55
2064 2706 4.022676 TGTGCGTTCATAAGAGTGAGTGTA 60.023 41.667 0.00 0.00 0.00 2.90
2065 2707 5.103000 GTGCGTTCATAAGAGTGAGTGTAT 58.897 41.667 0.00 0.00 0.00 2.29
2066 2708 5.004821 GTGCGTTCATAAGAGTGAGTGTATG 59.995 44.000 0.00 0.00 0.00 2.39
2067 2709 4.026475 GCGTTCATAAGAGTGAGTGTATGC 60.026 45.833 0.00 0.00 0.00 3.14
2068 2710 4.205181 CGTTCATAAGAGTGAGTGTATGCG 59.795 45.833 0.00 0.00 0.00 4.73
2069 2711 4.983671 TCATAAGAGTGAGTGTATGCGT 57.016 40.909 0.00 0.00 0.00 5.24
2070 2712 4.672409 TCATAAGAGTGAGTGTATGCGTG 58.328 43.478 0.00 0.00 0.00 5.34
2071 2713 4.157840 TCATAAGAGTGAGTGTATGCGTGT 59.842 41.667 0.00 0.00 0.00 4.49
2072 2714 2.638556 AGAGTGAGTGTATGCGTGTC 57.361 50.000 0.00 0.00 0.00 3.67
2073 2715 2.163509 AGAGTGAGTGTATGCGTGTCT 58.836 47.619 0.00 0.00 0.00 3.41
2074 2716 3.344515 AGAGTGAGTGTATGCGTGTCTA 58.655 45.455 0.00 0.00 0.00 2.59
2075 2717 3.948473 AGAGTGAGTGTATGCGTGTCTAT 59.052 43.478 0.00 0.00 0.00 1.98
2076 2718 5.123936 AGAGTGAGTGTATGCGTGTCTATA 58.876 41.667 0.00 0.00 0.00 1.31
2077 2719 5.765677 AGAGTGAGTGTATGCGTGTCTATAT 59.234 40.000 0.00 0.00 0.00 0.86
2078 2720 5.763088 AGTGAGTGTATGCGTGTCTATATG 58.237 41.667 0.00 0.00 0.00 1.78
2079 2721 5.531287 AGTGAGTGTATGCGTGTCTATATGA 59.469 40.000 0.00 0.00 0.00 2.15
2080 2722 5.853810 GTGAGTGTATGCGTGTCTATATGAG 59.146 44.000 0.00 0.00 0.00 2.90
2081 2723 4.799678 AGTGTATGCGTGTCTATATGAGC 58.200 43.478 0.00 0.00 0.00 4.26
2082 2724 4.278419 AGTGTATGCGTGTCTATATGAGCA 59.722 41.667 0.00 0.00 39.02 4.26
2083 2725 4.383052 GTGTATGCGTGTCTATATGAGCAC 59.617 45.833 0.00 0.00 37.44 4.40
2084 2726 4.278419 TGTATGCGTGTCTATATGAGCACT 59.722 41.667 0.00 0.00 37.44 4.40
2085 2727 3.801114 TGCGTGTCTATATGAGCACTT 57.199 42.857 0.00 0.00 0.00 3.16
2086 2728 3.447742 TGCGTGTCTATATGAGCACTTG 58.552 45.455 0.00 0.00 0.00 3.16
2087 2729 3.119137 TGCGTGTCTATATGAGCACTTGT 60.119 43.478 0.00 0.00 0.00 3.16
2088 2730 3.243877 GCGTGTCTATATGAGCACTTGTG 59.756 47.826 0.00 0.00 0.00 3.33
2089 2731 4.424626 CGTGTCTATATGAGCACTTGTGT 58.575 43.478 2.61 0.00 0.00 3.72
2090 2732 4.500837 CGTGTCTATATGAGCACTTGTGTC 59.499 45.833 2.61 0.64 0.00 3.67
2091 2733 5.655488 GTGTCTATATGAGCACTTGTGTCT 58.345 41.667 2.61 0.67 0.00 3.41
2092 2734 5.518128 GTGTCTATATGAGCACTTGTGTCTG 59.482 44.000 2.61 0.00 0.00 3.51
2093 2735 5.185828 TGTCTATATGAGCACTTGTGTCTGT 59.814 40.000 2.61 0.00 0.00 3.41
2094 2736 6.377146 TGTCTATATGAGCACTTGTGTCTGTA 59.623 38.462 2.61 0.00 0.00 2.74
2095 2737 6.693545 GTCTATATGAGCACTTGTGTCTGTAC 59.306 42.308 2.61 0.00 0.00 2.90
2096 2738 5.667539 ATATGAGCACTTGTGTCTGTACT 57.332 39.130 2.61 0.00 0.00 2.73
2097 2739 3.097877 TGAGCACTTGTGTCTGTACTG 57.902 47.619 2.61 0.00 0.00 2.74
2098 2740 2.693074 TGAGCACTTGTGTCTGTACTGA 59.307 45.455 0.00 0.00 0.00 3.41
2099 2741 3.321968 TGAGCACTTGTGTCTGTACTGAT 59.678 43.478 5.69 0.00 0.00 2.90
2100 2742 4.522789 TGAGCACTTGTGTCTGTACTGATA 59.477 41.667 5.69 0.15 0.00 2.15
2101 2743 5.185828 TGAGCACTTGTGTCTGTACTGATAT 59.814 40.000 5.69 0.00 0.00 1.63
2102 2744 6.042638 AGCACTTGTGTCTGTACTGATATT 57.957 37.500 5.69 0.00 0.00 1.28
2103 2745 7.093945 TGAGCACTTGTGTCTGTACTGATATTA 60.094 37.037 5.69 0.00 0.00 0.98
2104 2746 7.611770 AGCACTTGTGTCTGTACTGATATTAA 58.388 34.615 5.69 3.20 0.00 1.40
2105 2747 8.094548 AGCACTTGTGTCTGTACTGATATTAAA 58.905 33.333 5.69 0.37 0.00 1.52
2106 2748 8.717821 GCACTTGTGTCTGTACTGATATTAAAA 58.282 33.333 5.69 0.00 0.00 1.52
2152 2794 8.462143 AATATACGAAATTGCTAGACATACGG 57.538 34.615 0.00 0.00 0.00 4.02
2153 2795 3.454375 ACGAAATTGCTAGACATACGGG 58.546 45.455 0.00 0.00 0.00 5.28
2154 2796 3.118884 ACGAAATTGCTAGACATACGGGT 60.119 43.478 0.00 0.00 0.00 5.28
2155 2797 4.098349 ACGAAATTGCTAGACATACGGGTA 59.902 41.667 0.00 0.00 0.00 3.69
2156 2798 4.443394 CGAAATTGCTAGACATACGGGTAC 59.557 45.833 0.00 0.00 0.00 3.34
2171 2813 2.877043 GGTACCTACACACCCATACG 57.123 55.000 4.06 0.00 0.00 3.06
2172 2814 1.410153 GGTACCTACACACCCATACGG 59.590 57.143 4.06 0.00 37.81 4.02
2173 2815 2.378038 GTACCTACACACCCATACGGA 58.622 52.381 0.00 0.00 34.64 4.69
2174 2816 1.941377 ACCTACACACCCATACGGAA 58.059 50.000 0.00 0.00 34.64 4.30
2175 2817 1.551883 ACCTACACACCCATACGGAAC 59.448 52.381 0.00 0.00 34.64 3.62
2176 2818 1.134610 CCTACACACCCATACGGAACC 60.135 57.143 0.00 0.00 34.64 3.62
2177 2819 0.903942 TACACACCCATACGGAACCC 59.096 55.000 0.00 0.00 34.64 4.11
2187 2829 3.291383 CGGAACCCGCTTTGCCAA 61.291 61.111 0.00 0.00 41.17 4.52
2188 2830 2.338620 GGAACCCGCTTTGCCAAC 59.661 61.111 0.00 0.00 0.00 3.77
2189 2831 2.200337 GGAACCCGCTTTGCCAACT 61.200 57.895 0.00 0.00 0.00 3.16
2190 2832 1.007387 GAACCCGCTTTGCCAACTG 60.007 57.895 0.00 0.00 0.00 3.16
2191 2833 1.452145 GAACCCGCTTTGCCAACTGA 61.452 55.000 0.00 0.00 0.00 3.41
2192 2834 1.040339 AACCCGCTTTGCCAACTGAA 61.040 50.000 0.00 0.00 0.00 3.02
2193 2835 1.040339 ACCCGCTTTGCCAACTGAAA 61.040 50.000 0.00 0.00 0.00 2.69
2194 2836 0.318120 CCCGCTTTGCCAACTGAAAT 59.682 50.000 0.00 0.00 0.00 2.17
2195 2837 1.669795 CCCGCTTTGCCAACTGAAATC 60.670 52.381 0.00 0.00 0.00 2.17
2196 2838 1.669795 CCGCTTTGCCAACTGAAATCC 60.670 52.381 0.00 0.00 0.00 3.01
2197 2839 1.000385 CGCTTTGCCAACTGAAATCCA 60.000 47.619 0.00 0.00 0.00 3.41
2198 2840 2.545532 CGCTTTGCCAACTGAAATCCAA 60.546 45.455 0.00 0.00 0.00 3.53
2199 2841 2.802247 GCTTTGCCAACTGAAATCCAAC 59.198 45.455 0.00 0.00 0.00 3.77
2200 2842 3.493176 GCTTTGCCAACTGAAATCCAACT 60.493 43.478 0.00 0.00 0.00 3.16
2201 2843 4.261994 GCTTTGCCAACTGAAATCCAACTA 60.262 41.667 0.00 0.00 0.00 2.24
2202 2844 5.567423 GCTTTGCCAACTGAAATCCAACTAT 60.567 40.000 0.00 0.00 0.00 2.12
2203 2845 6.350110 GCTTTGCCAACTGAAATCCAACTATA 60.350 38.462 0.00 0.00 0.00 1.31
2204 2846 7.531857 TTTGCCAACTGAAATCCAACTATAA 57.468 32.000 0.00 0.00 0.00 0.98
2205 2847 7.531857 TTGCCAACTGAAATCCAACTATAAA 57.468 32.000 0.00 0.00 0.00 1.40
2206 2848 6.919721 TGCCAACTGAAATCCAACTATAAAC 58.080 36.000 0.00 0.00 0.00 2.01
2207 2849 6.719370 TGCCAACTGAAATCCAACTATAAACT 59.281 34.615 0.00 0.00 0.00 2.66
2208 2850 7.232534 TGCCAACTGAAATCCAACTATAAACTT 59.767 33.333 0.00 0.00 0.00 2.66
2209 2851 8.088365 GCCAACTGAAATCCAACTATAAACTTT 58.912 33.333 0.00 0.00 0.00 2.66
2210 2852 9.981114 CCAACTGAAATCCAACTATAAACTTTT 57.019 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 266 4.353437 ACCGAGGTCGCGTTCCAC 62.353 66.667 20.57 14.98 38.18 4.02
245 267 4.047059 GACCGAGGTCGCGTTCCA 62.047 66.667 20.57 0.00 38.18 3.53
259 281 2.363147 AGCAGTCCTCCGGAGACC 60.363 66.667 33.39 21.14 29.39 3.85
260 282 1.379309 AGAGCAGTCCTCCGGAGAC 60.379 63.158 33.39 25.54 41.74 3.36
261 283 1.077357 GAGAGCAGTCCTCCGGAGA 60.077 63.158 33.39 15.91 41.74 3.71
262 284 2.477176 CGAGAGCAGTCCTCCGGAG 61.477 68.421 25.36 25.36 41.74 4.63
263 285 2.438614 CGAGAGCAGTCCTCCGGA 60.439 66.667 2.93 2.93 41.74 5.14
264 286 2.752238 ACGAGAGCAGTCCTCCGG 60.752 66.667 0.00 0.00 41.74 5.14
265 287 2.795297 GACGAGAGCAGTCCTCCG 59.205 66.667 0.00 0.00 41.74 4.63
270 292 0.527385 GCTGATGGACGAGAGCAGTC 60.527 60.000 0.00 0.00 37.86 3.51
271 293 1.253593 TGCTGATGGACGAGAGCAGT 61.254 55.000 0.00 0.00 36.54 4.40
272 294 0.805322 GTGCTGATGGACGAGAGCAG 60.805 60.000 0.00 0.00 41.96 4.24
273 295 1.216444 GTGCTGATGGACGAGAGCA 59.784 57.895 0.00 0.00 39.11 4.26
274 296 4.100981 GTGCTGATGGACGAGAGC 57.899 61.111 0.00 0.00 0.00 4.09
280 302 0.741221 GGAGGTTCGTGCTGATGGAC 60.741 60.000 0.00 0.00 0.00 4.02
281 303 1.596934 GGAGGTTCGTGCTGATGGA 59.403 57.895 0.00 0.00 0.00 3.41
282 304 1.450312 GGGAGGTTCGTGCTGATGG 60.450 63.158 0.00 0.00 0.00 3.51
283 305 1.450312 GGGGAGGTTCGTGCTGATG 60.450 63.158 0.00 0.00 0.00 3.07
284 306 2.990479 GGGGAGGTTCGTGCTGAT 59.010 61.111 0.00 0.00 0.00 2.90
285 307 3.691342 CGGGGAGGTTCGTGCTGA 61.691 66.667 0.00 0.00 0.00 4.26
307 329 2.504244 GAGTTCTGGACCGCGTCG 60.504 66.667 4.92 0.00 32.65 5.12
308 330 2.126031 GGAGTTCTGGACCGCGTC 60.126 66.667 4.92 2.44 0.00 5.19
309 331 2.600769 AGGAGTTCTGGACCGCGT 60.601 61.111 4.92 0.00 0.00 6.01
310 332 2.182030 GAGGAGTTCTGGACCGCG 59.818 66.667 0.00 0.00 0.00 6.46
311 333 2.283529 TGGAGGAGTTCTGGACCGC 61.284 63.158 0.00 0.00 0.00 5.68
312 334 1.592223 GTGGAGGAGTTCTGGACCG 59.408 63.158 0.00 0.00 0.00 4.79
313 335 0.545548 AGGTGGAGGAGTTCTGGACC 60.546 60.000 0.00 0.00 0.00 4.46
314 336 0.610687 CAGGTGGAGGAGTTCTGGAC 59.389 60.000 0.00 0.00 0.00 4.02
315 337 1.194781 GCAGGTGGAGGAGTTCTGGA 61.195 60.000 0.00 0.00 0.00 3.86
316 338 1.298014 GCAGGTGGAGGAGTTCTGG 59.702 63.158 0.00 0.00 0.00 3.86
317 339 1.079543 CGCAGGTGGAGGAGTTCTG 60.080 63.158 0.00 0.00 0.00 3.02
318 340 2.948720 GCGCAGGTGGAGGAGTTCT 61.949 63.158 0.30 0.00 0.00 3.01
319 341 2.435059 GCGCAGGTGGAGGAGTTC 60.435 66.667 0.30 0.00 0.00 3.01
320 342 4.379243 CGCGCAGGTGGAGGAGTT 62.379 66.667 8.75 0.00 0.00 3.01
322 344 4.803426 GTCGCGCAGGTGGAGGAG 62.803 72.222 8.75 0.00 0.00 3.69
328 350 3.334751 TTTCACGTCGCGCAGGTG 61.335 61.111 19.62 19.62 41.50 4.00
329 351 3.335534 GTTTCACGTCGCGCAGGT 61.336 61.111 8.75 3.66 0.00 4.00
330 352 4.409588 CGTTTCACGTCGCGCAGG 62.410 66.667 8.75 2.96 36.74 4.85
424 446 2.524300 GCACTACGAGAACGGCAAA 58.476 52.632 0.00 0.00 44.46 3.68
1361 1983 2.202570 CGGCGTCCAACTACTCGG 60.203 66.667 0.00 0.00 0.00 4.63
1438 2060 0.467290 ATGAAGCCCAACAACCACGT 60.467 50.000 0.00 0.00 0.00 4.49
1440 2062 1.873486 GCAATGAAGCCCAACAACCAC 60.873 52.381 0.00 0.00 0.00 4.16
1467 2089 1.057851 TCCCGGTGAGTTTGGGTCTT 61.058 55.000 0.00 0.00 43.75 3.01
1469 2091 1.003718 CTCCCGGTGAGTTTGGGTC 60.004 63.158 0.00 0.00 43.75 4.46
1470 2092 2.526046 CCTCCCGGTGAGTTTGGGT 61.526 63.158 15.95 0.00 43.75 4.51
1472 2094 2.359975 GCCTCCCGGTGAGTTTGG 60.360 66.667 15.95 5.68 39.65 3.28
1475 2097 1.201429 AATCTGCCTCCCGGTGAGTT 61.201 55.000 15.95 3.93 39.65 3.01
1476 2098 1.613630 AATCTGCCTCCCGGTGAGT 60.614 57.895 15.95 0.00 39.65 3.41
1477 2099 1.144936 GAATCTGCCTCCCGGTGAG 59.855 63.158 11.75 11.75 41.07 3.51
1478 2100 1.612146 TGAATCTGCCTCCCGGTGA 60.612 57.895 0.00 0.00 0.00 4.02
1479 2101 1.153289 CTGAATCTGCCTCCCGGTG 60.153 63.158 0.00 0.00 0.00 4.94
1480 2102 1.201429 AACTGAATCTGCCTCCCGGT 61.201 55.000 0.00 0.00 0.00 5.28
1481 2103 0.462759 GAACTGAATCTGCCTCCCGG 60.463 60.000 0.00 0.00 0.00 5.73
1482 2104 0.250234 TGAACTGAATCTGCCTCCCG 59.750 55.000 0.00 0.00 0.00 5.14
1483 2105 2.295885 CATGAACTGAATCTGCCTCCC 58.704 52.381 0.00 0.00 0.00 4.30
1500 2124 5.809562 GTGAGATCTACAAGAGTGAACCATG 59.190 44.000 0.00 0.00 0.00 3.66
1509 2134 2.621055 CTCCCGGTGAGATCTACAAGAG 59.379 54.545 13.05 0.00 44.42 2.85
1553 2190 1.965930 GGCACATGTTCGTCCAGCA 60.966 57.895 0.00 0.00 0.00 4.41
1651 2291 1.677217 GGAATGGCTATCTCGATGGGC 60.677 57.143 9.40 9.40 43.51 5.36
1656 2297 1.982660 AGACGGAATGGCTATCTCGA 58.017 50.000 10.88 0.00 0.00 4.04
1684 2325 2.615447 TCCGATACGCTCTGATACGTTT 59.385 45.455 10.50 4.10 43.35 3.60
1687 2328 2.535137 CGATCCGATACGCTCTGATACG 60.535 54.545 0.00 0.00 28.96 3.06
1717 2358 7.886629 AGATATGTTCCCGTTTGTAGTACTA 57.113 36.000 0.00 0.00 0.00 1.82
1729 2370 5.124138 AGACGCTAGATTAGATATGTTCCCG 59.876 44.000 0.00 0.00 0.00 5.14
1761 2403 1.068434 CGAGAGAAGAATGGAGAGCCC 59.932 57.143 0.00 0.00 0.00 5.19
1763 2405 2.808244 CACGAGAGAAGAATGGAGAGC 58.192 52.381 0.00 0.00 0.00 4.09
1770 2412 0.827368 GGGAGGCACGAGAGAAGAAT 59.173 55.000 0.00 0.00 0.00 2.40
1781 2423 2.361737 GCAAGGGAAGGGAGGCAC 60.362 66.667 0.00 0.00 0.00 5.01
1782 2424 1.803453 AATGCAAGGGAAGGGAGGCA 61.803 55.000 0.00 0.00 35.54 4.75
1788 2430 2.425143 TGCTCTAATGCAAGGGAAGG 57.575 50.000 0.00 0.00 40.29 3.46
1792 2434 3.548770 TGAAGATGCTCTAATGCAAGGG 58.451 45.455 0.00 0.00 46.61 3.95
1793 2435 5.298527 TCATTGAAGATGCTCTAATGCAAGG 59.701 40.000 0.00 0.00 46.61 3.61
1794 2436 6.373186 TCATTGAAGATGCTCTAATGCAAG 57.627 37.500 0.00 0.00 46.61 4.01
1795 2437 6.762702 TTCATTGAAGATGCTCTAATGCAA 57.237 33.333 0.00 0.00 46.61 4.08
1796 2438 7.230712 ATCATTCATTGAAGATGCTCTAATGCA 59.769 33.333 5.21 0.00 41.81 3.96
1797 2439 6.967135 TCATTCATTGAAGATGCTCTAATGC 58.033 36.000 5.21 0.00 0.00 3.56
1798 2440 8.568794 ACATCATTCATTGAAGATGCTCTAATG 58.431 33.333 23.83 13.17 41.08 1.90
1799 2441 8.693120 ACATCATTCATTGAAGATGCTCTAAT 57.307 30.769 23.83 11.40 41.08 1.73
1800 2442 9.788889 ATACATCATTCATTGAAGATGCTCTAA 57.211 29.630 23.83 13.45 41.08 2.10
1802 2444 9.961264 ATATACATCATTCATTGAAGATGCTCT 57.039 29.630 23.83 16.56 41.08 4.09
1803 2445 9.989869 CATATACATCATTCATTGAAGATGCTC 57.010 33.333 23.83 0.00 41.08 4.26
1804 2446 8.459635 GCATATACATCATTCATTGAAGATGCT 58.540 33.333 23.83 18.18 41.08 3.79
1805 2447 7.428472 CGCATATACATCATTCATTGAAGATGC 59.572 37.037 23.83 15.07 41.08 3.91
1806 2448 8.662141 TCGCATATACATCATTCATTGAAGATG 58.338 33.333 23.06 23.06 42.61 2.90
1807 2449 8.782339 TCGCATATACATCATTCATTGAAGAT 57.218 30.769 5.21 5.60 38.03 2.40
1808 2450 8.498358 GTTCGCATATACATCATTCATTGAAGA 58.502 33.333 5.21 3.61 38.03 2.87
1809 2451 7.747799 GGTTCGCATATACATCATTCATTGAAG 59.252 37.037 5.21 0.00 38.03 3.02
1810 2452 7.228308 TGGTTCGCATATACATCATTCATTGAA 59.772 33.333 0.75 0.75 38.03 2.69
1811 2453 6.709846 TGGTTCGCATATACATCATTCATTGA 59.290 34.615 0.00 0.00 39.12 2.57
1812 2454 6.901265 TGGTTCGCATATACATCATTCATTG 58.099 36.000 0.00 0.00 0.00 2.82
1813 2455 7.013178 TGTTGGTTCGCATATACATCATTCATT 59.987 33.333 0.00 0.00 0.00 2.57
1814 2456 6.486320 TGTTGGTTCGCATATACATCATTCAT 59.514 34.615 0.00 0.00 0.00 2.57
1815 2457 5.819901 TGTTGGTTCGCATATACATCATTCA 59.180 36.000 0.00 0.00 0.00 2.57
1816 2458 6.299023 TGTTGGTTCGCATATACATCATTC 57.701 37.500 0.00 0.00 0.00 2.67
1817 2459 6.262944 ACATGTTGGTTCGCATATACATCATT 59.737 34.615 0.00 0.00 0.00 2.57
1818 2460 5.764686 ACATGTTGGTTCGCATATACATCAT 59.235 36.000 0.00 0.00 0.00 2.45
1819 2461 5.122519 ACATGTTGGTTCGCATATACATCA 58.877 37.500 0.00 0.00 0.00 3.07
1820 2462 5.673337 ACATGTTGGTTCGCATATACATC 57.327 39.130 0.00 0.00 0.00 3.06
1821 2463 6.288294 ACTACATGTTGGTTCGCATATACAT 58.712 36.000 2.30 0.00 0.00 2.29
1822 2464 5.666462 ACTACATGTTGGTTCGCATATACA 58.334 37.500 2.30 0.00 0.00 2.29
1823 2465 6.598753 AACTACATGTTGGTTCGCATATAC 57.401 37.500 2.30 0.00 37.52 1.47
1836 2478 6.012858 TCCCTCTAACCATTCAACTACATGTT 60.013 38.462 2.30 0.00 39.92 2.71
1837 2479 5.487488 TCCCTCTAACCATTCAACTACATGT 59.513 40.000 2.69 2.69 0.00 3.21
1838 2480 5.817816 GTCCCTCTAACCATTCAACTACATG 59.182 44.000 0.00 0.00 0.00 3.21
1839 2481 5.726793 AGTCCCTCTAACCATTCAACTACAT 59.273 40.000 0.00 0.00 0.00 2.29
1840 2482 5.046591 CAGTCCCTCTAACCATTCAACTACA 60.047 44.000 0.00 0.00 0.00 2.74
1841 2483 5.046520 ACAGTCCCTCTAACCATTCAACTAC 60.047 44.000 0.00 0.00 0.00 2.73
1842 2484 5.046591 CACAGTCCCTCTAACCATTCAACTA 60.047 44.000 0.00 0.00 0.00 2.24
1843 2485 3.910627 ACAGTCCCTCTAACCATTCAACT 59.089 43.478 0.00 0.00 0.00 3.16
1844 2486 4.003648 CACAGTCCCTCTAACCATTCAAC 58.996 47.826 0.00 0.00 0.00 3.18
1845 2487 3.009033 CCACAGTCCCTCTAACCATTCAA 59.991 47.826 0.00 0.00 0.00 2.69
1846 2488 2.571653 CCACAGTCCCTCTAACCATTCA 59.428 50.000 0.00 0.00 0.00 2.57
1847 2489 2.572104 ACCACAGTCCCTCTAACCATTC 59.428 50.000 0.00 0.00 0.00 2.67
1848 2490 2.632537 ACCACAGTCCCTCTAACCATT 58.367 47.619 0.00 0.00 0.00 3.16
1849 2491 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
1850 2492 3.484953 ATACCACAGTCCCTCTAACCA 57.515 47.619 0.00 0.00 0.00 3.67
1851 2493 3.134262 GGAATACCACAGTCCCTCTAACC 59.866 52.174 0.00 0.00 35.23 2.85
1852 2494 4.403585 GGAATACCACAGTCCCTCTAAC 57.596 50.000 0.00 0.00 35.23 2.34
1859 2501 0.107165 GGCTGGGAATACCACAGTCC 60.107 60.000 0.00 0.00 46.80 3.85
1860 2502 0.107165 GGGCTGGGAATACCACAGTC 60.107 60.000 0.00 0.00 46.80 3.51
1861 2503 0.844661 TGGGCTGGGAATACCACAGT 60.845 55.000 0.00 0.00 46.80 3.55
1862 2504 0.552848 ATGGGCTGGGAATACCACAG 59.447 55.000 0.00 0.00 46.80 3.66
1863 2505 0.550914 GATGGGCTGGGAATACCACA 59.449 55.000 0.00 0.00 46.80 4.17
1864 2506 0.550914 TGATGGGCTGGGAATACCAC 59.449 55.000 0.00 0.00 46.80 4.16
1866 2508 0.111253 CCTGATGGGCTGGGAATACC 59.889 60.000 0.00 0.00 40.81 2.73
1867 2509 3.733709 CCTGATGGGCTGGGAATAC 57.266 57.895 0.00 0.00 32.31 1.89
1878 2520 3.834231 ACCAAGATTTGAAACCCTGATGG 59.166 43.478 0.00 0.00 41.37 3.51
1879 2521 4.813027 CACCAAGATTTGAAACCCTGATG 58.187 43.478 0.00 0.00 0.00 3.07
1880 2522 3.259123 GCACCAAGATTTGAAACCCTGAT 59.741 43.478 0.00 0.00 0.00 2.90
1881 2523 2.627699 GCACCAAGATTTGAAACCCTGA 59.372 45.455 0.00 0.00 0.00 3.86
1882 2524 2.629617 AGCACCAAGATTTGAAACCCTG 59.370 45.455 0.00 0.00 0.00 4.45
1883 2525 2.893489 GAGCACCAAGATTTGAAACCCT 59.107 45.455 0.00 0.00 0.00 4.34
1884 2526 2.351738 CGAGCACCAAGATTTGAAACCC 60.352 50.000 0.00 0.00 0.00 4.11
1885 2527 2.922335 GCGAGCACCAAGATTTGAAACC 60.922 50.000 0.00 0.00 0.00 3.27
1886 2528 2.287547 TGCGAGCACCAAGATTTGAAAC 60.288 45.455 0.00 0.00 0.00 2.78
1887 2529 1.952990 TGCGAGCACCAAGATTTGAAA 59.047 42.857 0.00 0.00 0.00 2.69
1888 2530 1.603456 TGCGAGCACCAAGATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
1889 2531 1.825090 ATGCGAGCACCAAGATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
1890 2532 2.642139 AATGCGAGCACCAAGATTTG 57.358 45.000 0.00 0.00 0.00 2.32
1891 2533 4.989279 ATAAATGCGAGCACCAAGATTT 57.011 36.364 0.00 0.00 0.00 2.17
1892 2534 4.202050 GGAATAAATGCGAGCACCAAGATT 60.202 41.667 0.00 0.00 0.00 2.40
1893 2535 3.316308 GGAATAAATGCGAGCACCAAGAT 59.684 43.478 0.00 0.00 0.00 2.40
1894 2536 2.682856 GGAATAAATGCGAGCACCAAGA 59.317 45.455 0.00 0.00 0.00 3.02
1895 2537 2.223572 GGGAATAAATGCGAGCACCAAG 60.224 50.000 0.00 0.00 0.00 3.61
1896 2538 1.748493 GGGAATAAATGCGAGCACCAA 59.252 47.619 0.00 0.00 0.00 3.67
1897 2539 1.388547 GGGAATAAATGCGAGCACCA 58.611 50.000 0.00 0.00 0.00 4.17
1898 2540 0.307760 CGGGAATAAATGCGAGCACC 59.692 55.000 0.00 0.00 0.00 5.01
1899 2541 1.295792 TCGGGAATAAATGCGAGCAC 58.704 50.000 0.00 0.00 0.00 4.40
1900 2542 2.031258 TTCGGGAATAAATGCGAGCA 57.969 45.000 0.00 0.00 0.00 4.26
1901 2543 3.626028 AATTCGGGAATAAATGCGAGC 57.374 42.857 0.00 0.00 0.00 5.03
1902 2544 8.574196 AAAATAAATTCGGGAATAAATGCGAG 57.426 30.769 0.00 0.00 0.00 5.03
1911 2553 9.691362 CGGAAATCATAAAATAAATTCGGGAAT 57.309 29.630 0.00 0.00 0.00 3.01
1912 2554 8.138712 CCGGAAATCATAAAATAAATTCGGGAA 58.861 33.333 0.00 0.00 37.75 3.97
1913 2555 7.653647 CCGGAAATCATAAAATAAATTCGGGA 58.346 34.615 0.00 0.00 37.75 5.14
1914 2556 6.364976 GCCGGAAATCATAAAATAAATTCGGG 59.635 38.462 5.05 0.00 38.25 5.14
1915 2557 6.087555 CGCCGGAAATCATAAAATAAATTCGG 59.912 38.462 5.05 0.00 0.00 4.30
1916 2558 6.853872 TCGCCGGAAATCATAAAATAAATTCG 59.146 34.615 5.05 0.00 0.00 3.34
1917 2559 8.638565 CATCGCCGGAAATCATAAAATAAATTC 58.361 33.333 5.05 0.00 0.00 2.17
1918 2560 7.116233 GCATCGCCGGAAATCATAAAATAAATT 59.884 33.333 5.05 0.00 0.00 1.82
1919 2561 6.586082 GCATCGCCGGAAATCATAAAATAAAT 59.414 34.615 5.05 0.00 0.00 1.40
1920 2562 5.918011 GCATCGCCGGAAATCATAAAATAAA 59.082 36.000 5.05 0.00 0.00 1.40
1921 2563 5.457140 GCATCGCCGGAAATCATAAAATAA 58.543 37.500 5.05 0.00 0.00 1.40
1922 2564 4.377943 CGCATCGCCGGAAATCATAAAATA 60.378 41.667 5.05 0.00 0.00 1.40
1923 2565 3.609175 CGCATCGCCGGAAATCATAAAAT 60.609 43.478 5.05 0.00 0.00 1.82
1924 2566 2.286713 CGCATCGCCGGAAATCATAAAA 60.287 45.455 5.05 0.00 0.00 1.52
1925 2567 1.262950 CGCATCGCCGGAAATCATAAA 59.737 47.619 5.05 0.00 0.00 1.40
1926 2568 0.865111 CGCATCGCCGGAAATCATAA 59.135 50.000 5.05 0.00 0.00 1.90
1927 2569 2.527671 CGCATCGCCGGAAATCATA 58.472 52.632 5.05 0.00 0.00 2.15
1928 2570 3.333414 CGCATCGCCGGAAATCAT 58.667 55.556 5.05 0.00 0.00 2.45
1939 2581 1.592110 CCTTGTCGTAAATGCGCATCG 60.592 52.381 25.53 22.46 0.00 3.84
1940 2582 1.856014 GCCTTGTCGTAAATGCGCATC 60.856 52.381 25.53 10.62 0.00 3.91
1941 2583 0.098728 GCCTTGTCGTAAATGCGCAT 59.901 50.000 19.28 19.28 0.00 4.73
1942 2584 1.499949 GCCTTGTCGTAAATGCGCA 59.500 52.632 14.96 14.96 0.00 6.09
1943 2585 1.580132 CGCCTTGTCGTAAATGCGC 60.580 57.895 0.00 0.00 37.37 6.09
1944 2586 1.580132 GCGCCTTGTCGTAAATGCG 60.580 57.895 14.37 14.37 44.00 4.73
1945 2587 1.226295 GGCGCCTTGTCGTAAATGC 60.226 57.895 22.15 0.00 0.00 3.56
1946 2588 1.326548 GTAGGCGCCTTGTCGTAAATG 59.673 52.381 37.74 0.00 0.00 2.32
1947 2589 1.648504 GTAGGCGCCTTGTCGTAAAT 58.351 50.000 37.74 8.78 0.00 1.40
1948 2590 0.733566 CGTAGGCGCCTTGTCGTAAA 60.734 55.000 37.74 11.48 0.00 2.01
1949 2591 1.153978 CGTAGGCGCCTTGTCGTAA 60.154 57.895 37.74 12.41 0.00 3.18
1950 2592 2.486504 CGTAGGCGCCTTGTCGTA 59.513 61.111 37.74 13.33 0.00 3.43
1951 2593 4.430765 CCGTAGGCGCCTTGTCGT 62.431 66.667 37.74 12.35 46.14 4.34
1963 2605 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
1964 2606 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
1965 2607 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
1966 2608 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
1967 2609 5.292101 CCATCTTGAGATTTACGAAGTCACC 59.708 44.000 0.00 0.00 35.39 4.02
1968 2610 5.869888 ACCATCTTGAGATTTACGAAGTCAC 59.130 40.000 0.00 0.00 35.39 3.67
1969 2611 6.037786 ACCATCTTGAGATTTACGAAGTCA 57.962 37.500 0.00 0.00 35.39 3.41
1970 2612 7.306866 GCATACCATCTTGAGATTTACGAAGTC 60.307 40.741 0.00 0.00 35.39 3.01
1971 2613 6.480320 GCATACCATCTTGAGATTTACGAAGT 59.520 38.462 0.00 0.00 37.29 3.01
1972 2614 6.073548 GGCATACCATCTTGAGATTTACGAAG 60.074 42.308 0.00 0.00 35.26 3.79
1973 2615 5.758296 GGCATACCATCTTGAGATTTACGAA 59.242 40.000 0.00 0.00 35.26 3.85
1974 2616 5.297547 GGCATACCATCTTGAGATTTACGA 58.702 41.667 0.00 0.00 35.26 3.43
1975 2617 4.150627 CGGCATACCATCTTGAGATTTACG 59.849 45.833 0.00 0.00 34.57 3.18
1976 2618 4.452455 CCGGCATACCATCTTGAGATTTAC 59.548 45.833 0.00 0.00 34.57 2.01
1977 2619 4.346709 TCCGGCATACCATCTTGAGATTTA 59.653 41.667 0.00 0.00 34.57 1.40
1978 2620 3.136443 TCCGGCATACCATCTTGAGATTT 59.864 43.478 0.00 0.00 34.57 2.17
1979 2621 2.705658 TCCGGCATACCATCTTGAGATT 59.294 45.455 0.00 0.00 34.57 2.40
1980 2622 2.329267 TCCGGCATACCATCTTGAGAT 58.671 47.619 0.00 0.00 34.57 2.75
1981 2623 1.788229 TCCGGCATACCATCTTGAGA 58.212 50.000 0.00 0.00 34.57 3.27
1982 2624 2.037641 TGATCCGGCATACCATCTTGAG 59.962 50.000 0.00 0.00 34.57 3.02
1983 2625 2.037641 CTGATCCGGCATACCATCTTGA 59.962 50.000 0.00 0.00 34.57 3.02
1984 2626 2.224378 ACTGATCCGGCATACCATCTTG 60.224 50.000 0.00 0.00 34.57 3.02
1985 2627 2.037772 GACTGATCCGGCATACCATCTT 59.962 50.000 0.00 0.00 34.57 2.40
1986 2628 1.620819 GACTGATCCGGCATACCATCT 59.379 52.381 0.00 0.00 34.57 2.90
1987 2629 1.620819 AGACTGATCCGGCATACCATC 59.379 52.381 0.00 0.00 34.57 3.51
1988 2630 1.722034 AGACTGATCCGGCATACCAT 58.278 50.000 0.00 0.00 34.57 3.55
1989 2631 1.496060 AAGACTGATCCGGCATACCA 58.504 50.000 0.00 0.00 34.57 3.25
1990 2632 2.484889 GAAAGACTGATCCGGCATACC 58.515 52.381 0.00 0.00 0.00 2.73
1991 2633 2.128035 CGAAAGACTGATCCGGCATAC 58.872 52.381 0.00 0.00 0.00 2.39
1992 2634 2.028876 TCGAAAGACTGATCCGGCATA 58.971 47.619 0.00 0.00 33.31 3.14
1993 2635 0.824109 TCGAAAGACTGATCCGGCAT 59.176 50.000 0.00 0.00 33.31 4.40
1994 2636 0.606096 TTCGAAAGACTGATCCGGCA 59.394 50.000 0.00 0.00 41.84 5.69
1995 2637 1.135083 TCTTCGAAAGACTGATCCGGC 60.135 52.381 0.00 0.00 41.84 6.13
1996 2638 2.941453 TCTTCGAAAGACTGATCCGG 57.059 50.000 0.00 0.00 41.84 5.14
1997 2639 2.537625 GCATCTTCGAAAGACTGATCCG 59.462 50.000 0.00 0.00 41.01 4.18
1998 2640 3.791245 AGCATCTTCGAAAGACTGATCC 58.209 45.455 0.00 0.00 41.01 3.36
1999 2641 4.428209 TGAGCATCTTCGAAAGACTGATC 58.572 43.478 0.00 3.57 41.01 2.92
2000 2642 4.462508 TGAGCATCTTCGAAAGACTGAT 57.537 40.909 0.00 0.00 41.01 2.90
2001 2643 3.942130 TGAGCATCTTCGAAAGACTGA 57.058 42.857 0.00 0.00 41.01 3.41
2002 2644 5.231779 CACTATGAGCATCTTCGAAAGACTG 59.768 44.000 0.00 0.00 41.01 3.51
2003 2645 5.347342 CACTATGAGCATCTTCGAAAGACT 58.653 41.667 0.00 0.00 41.01 3.24
2004 2646 4.505922 CCACTATGAGCATCTTCGAAAGAC 59.494 45.833 0.00 0.00 41.01 3.01
2005 2647 4.160439 ACCACTATGAGCATCTTCGAAAGA 59.840 41.667 0.00 0.00 42.69 2.52
2006 2648 4.437239 ACCACTATGAGCATCTTCGAAAG 58.563 43.478 0.00 0.00 34.92 2.62
2007 2649 4.471904 ACCACTATGAGCATCTTCGAAA 57.528 40.909 0.00 0.00 34.92 3.46
2008 2650 4.038042 CCTACCACTATGAGCATCTTCGAA 59.962 45.833 0.00 0.00 34.92 3.71
2009 2651 3.570125 CCTACCACTATGAGCATCTTCGA 59.430 47.826 0.00 0.00 34.92 3.71
2010 2652 3.305676 CCCTACCACTATGAGCATCTTCG 60.306 52.174 0.00 0.00 34.92 3.79
2011 2653 3.643792 ACCCTACCACTATGAGCATCTTC 59.356 47.826 0.00 0.00 34.92 2.87
2012 2654 3.389329 CACCCTACCACTATGAGCATCTT 59.611 47.826 0.00 0.00 34.92 2.40
2013 2655 2.968574 CACCCTACCACTATGAGCATCT 59.031 50.000 0.00 0.00 34.92 2.90
2014 2656 2.700897 ACACCCTACCACTATGAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
2015 2657 2.435805 CACACCCTACCACTATGAGCAT 59.564 50.000 0.00 0.00 0.00 3.79
2016 2658 1.831106 CACACCCTACCACTATGAGCA 59.169 52.381 0.00 0.00 0.00 4.26
2017 2659 1.473434 GCACACCCTACCACTATGAGC 60.473 57.143 0.00 0.00 0.00 4.26
2018 2660 1.202417 CGCACACCCTACCACTATGAG 60.202 57.143 0.00 0.00 0.00 2.90
2019 2661 0.821517 CGCACACCCTACCACTATGA 59.178 55.000 0.00 0.00 0.00 2.15
2020 2662 0.535335 ACGCACACCCTACCACTATG 59.465 55.000 0.00 0.00 0.00 2.23
2021 2663 0.535335 CACGCACACCCTACCACTAT 59.465 55.000 0.00 0.00 0.00 2.12
2022 2664 0.828762 ACACGCACACCCTACCACTA 60.829 55.000 0.00 0.00 0.00 2.74
2023 2665 2.138179 ACACGCACACCCTACCACT 61.138 57.895 0.00 0.00 0.00 4.00
2024 2666 1.959226 CACACGCACACCCTACCAC 60.959 63.158 0.00 0.00 0.00 4.16
2025 2667 2.423874 CACACGCACACCCTACCA 59.576 61.111 0.00 0.00 0.00 3.25
2026 2668 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
2027 2669 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
2028 2670 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2031 2673 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
2032 2674 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2033 2675 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2034 2676 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
2035 2677 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
2036 2678 0.787787 TCTTATGAACGCACACACGC 59.212 50.000 0.00 0.00 36.19 5.34
2037 2679 2.058798 ACTCTTATGAACGCACACACG 58.941 47.619 0.00 0.00 39.50 4.49
2038 2680 3.057019 TCACTCTTATGAACGCACACAC 58.943 45.455 0.00 0.00 0.00 3.82
2039 2681 3.243737 ACTCACTCTTATGAACGCACACA 60.244 43.478 0.00 0.00 0.00 3.72
2040 2682 3.121944 CACTCACTCTTATGAACGCACAC 59.878 47.826 0.00 0.00 0.00 3.82
2041 2683 3.243737 ACACTCACTCTTATGAACGCACA 60.244 43.478 0.00 0.00 0.00 4.57
2042 2684 3.318017 ACACTCACTCTTATGAACGCAC 58.682 45.455 0.00 0.00 0.00 5.34
2043 2685 3.660501 ACACTCACTCTTATGAACGCA 57.339 42.857 0.00 0.00 0.00 5.24
2044 2686 4.026475 GCATACACTCACTCTTATGAACGC 60.026 45.833 0.00 0.00 0.00 4.84
2045 2687 4.205181 CGCATACACTCACTCTTATGAACG 59.795 45.833 0.00 0.00 0.00 3.95
2046 2688 5.004821 CACGCATACACTCACTCTTATGAAC 59.995 44.000 0.00 0.00 0.00 3.18
2047 2689 5.102313 CACGCATACACTCACTCTTATGAA 58.898 41.667 0.00 0.00 0.00 2.57
2048 2690 4.157840 ACACGCATACACTCACTCTTATGA 59.842 41.667 0.00 0.00 0.00 2.15
2049 2691 4.424626 ACACGCATACACTCACTCTTATG 58.575 43.478 0.00 0.00 0.00 1.90
2050 2692 4.399618 AGACACGCATACACTCACTCTTAT 59.600 41.667 0.00 0.00 0.00 1.73
2051 2693 3.756963 AGACACGCATACACTCACTCTTA 59.243 43.478 0.00 0.00 0.00 2.10
2052 2694 2.558795 AGACACGCATACACTCACTCTT 59.441 45.455 0.00 0.00 0.00 2.85
2053 2695 2.163509 AGACACGCATACACTCACTCT 58.836 47.619 0.00 0.00 0.00 3.24
2054 2696 2.638556 AGACACGCATACACTCACTC 57.361 50.000 0.00 0.00 0.00 3.51
2055 2697 5.531287 TCATATAGACACGCATACACTCACT 59.469 40.000 0.00 0.00 0.00 3.41
2056 2698 5.758924 TCATATAGACACGCATACACTCAC 58.241 41.667 0.00 0.00 0.00 3.51
2057 2699 5.562890 GCTCATATAGACACGCATACACTCA 60.563 44.000 0.00 0.00 0.00 3.41
2058 2700 4.854291 GCTCATATAGACACGCATACACTC 59.146 45.833 0.00 0.00 0.00 3.51
2059 2701 4.278419 TGCTCATATAGACACGCATACACT 59.722 41.667 0.00 0.00 0.00 3.55
2060 2702 4.383052 GTGCTCATATAGACACGCATACAC 59.617 45.833 0.00 0.00 29.20 2.90
2061 2703 4.278419 AGTGCTCATATAGACACGCATACA 59.722 41.667 0.00 0.00 37.34 2.29
2062 2704 4.799678 AGTGCTCATATAGACACGCATAC 58.200 43.478 0.00 0.00 37.34 2.39
2063 2705 5.221244 ACAAGTGCTCATATAGACACGCATA 60.221 40.000 0.00 0.00 37.34 3.14
2064 2706 4.053983 CAAGTGCTCATATAGACACGCAT 58.946 43.478 0.00 0.00 37.34 4.73
2065 2707 3.119137 ACAAGTGCTCATATAGACACGCA 60.119 43.478 0.00 0.00 37.34 5.24
2066 2708 3.243877 CACAAGTGCTCATATAGACACGC 59.756 47.826 0.00 0.00 37.34 5.34
2067 2709 4.424626 ACACAAGTGCTCATATAGACACG 58.575 43.478 0.00 0.00 37.34 4.49
2068 2710 5.518128 CAGACACAAGTGCTCATATAGACAC 59.482 44.000 0.00 0.00 34.42 3.67
2069 2711 5.185828 ACAGACACAAGTGCTCATATAGACA 59.814 40.000 0.00 0.00 0.00 3.41
2070 2712 5.655488 ACAGACACAAGTGCTCATATAGAC 58.345 41.667 0.00 0.00 0.00 2.59
2071 2713 5.921962 ACAGACACAAGTGCTCATATAGA 57.078 39.130 0.00 0.00 0.00 1.98
2072 2714 6.694844 CAGTACAGACACAAGTGCTCATATAG 59.305 42.308 0.00 0.00 0.00 1.31
2073 2715 6.377146 TCAGTACAGACACAAGTGCTCATATA 59.623 38.462 0.00 0.00 0.00 0.86
2074 2716 5.185828 TCAGTACAGACACAAGTGCTCATAT 59.814 40.000 0.00 0.00 0.00 1.78
2075 2717 4.522789 TCAGTACAGACACAAGTGCTCATA 59.477 41.667 0.00 0.00 0.00 2.15
2076 2718 3.321968 TCAGTACAGACACAAGTGCTCAT 59.678 43.478 0.00 0.00 0.00 2.90
2077 2719 2.693074 TCAGTACAGACACAAGTGCTCA 59.307 45.455 0.00 0.00 0.00 4.26
2078 2720 3.371102 TCAGTACAGACACAAGTGCTC 57.629 47.619 0.00 0.00 0.00 4.26
2079 2721 5.667539 ATATCAGTACAGACACAAGTGCT 57.332 39.130 0.00 0.00 0.00 4.40
2080 2722 7.827819 TTAATATCAGTACAGACACAAGTGC 57.172 36.000 0.00 0.00 0.00 4.40
2126 2768 8.922676 CCGTATGTCTAGCAATTTCGTATATTT 58.077 33.333 0.00 0.00 0.00 1.40
2127 2769 7.544566 CCCGTATGTCTAGCAATTTCGTATATT 59.455 37.037 0.00 0.00 0.00 1.28
2128 2770 7.033791 CCCGTATGTCTAGCAATTTCGTATAT 58.966 38.462 0.00 0.00 0.00 0.86
2129 2771 6.016024 ACCCGTATGTCTAGCAATTTCGTATA 60.016 38.462 0.00 0.00 0.00 1.47
2130 2772 5.221382 ACCCGTATGTCTAGCAATTTCGTAT 60.221 40.000 0.00 0.00 0.00 3.06
2131 2773 4.098349 ACCCGTATGTCTAGCAATTTCGTA 59.902 41.667 0.00 0.00 0.00 3.43
2132 2774 3.118884 ACCCGTATGTCTAGCAATTTCGT 60.119 43.478 0.00 0.00 0.00 3.85
2133 2775 3.454375 ACCCGTATGTCTAGCAATTTCG 58.546 45.455 0.00 0.00 0.00 3.46
2134 2776 4.748600 GGTACCCGTATGTCTAGCAATTTC 59.251 45.833 0.00 0.00 0.00 2.17
2135 2777 4.407945 AGGTACCCGTATGTCTAGCAATTT 59.592 41.667 8.74 0.00 0.00 1.82
2136 2778 3.965347 AGGTACCCGTATGTCTAGCAATT 59.035 43.478 8.74 0.00 0.00 2.32
2137 2779 3.573695 AGGTACCCGTATGTCTAGCAAT 58.426 45.455 8.74 0.00 0.00 3.56
2138 2780 3.022557 AGGTACCCGTATGTCTAGCAA 57.977 47.619 8.74 0.00 0.00 3.91
2139 2781 2.742428 AGGTACCCGTATGTCTAGCA 57.258 50.000 8.74 0.00 0.00 3.49
2140 2782 3.251972 GTGTAGGTACCCGTATGTCTAGC 59.748 52.174 8.74 0.00 0.00 3.42
2141 2783 4.274459 GTGTGTAGGTACCCGTATGTCTAG 59.726 50.000 8.74 0.00 0.00 2.43
2142 2784 4.199310 GTGTGTAGGTACCCGTATGTCTA 58.801 47.826 8.74 0.00 0.00 2.59
2143 2785 3.019564 GTGTGTAGGTACCCGTATGTCT 58.980 50.000 8.74 0.00 0.00 3.41
2144 2786 2.099756 GGTGTGTAGGTACCCGTATGTC 59.900 54.545 8.74 0.00 0.00 3.06
2145 2787 2.102578 GGTGTGTAGGTACCCGTATGT 58.897 52.381 8.74 0.00 0.00 2.29
2146 2788 1.410153 GGGTGTGTAGGTACCCGTATG 59.590 57.143 8.74 0.00 46.42 2.39
2147 2789 1.780503 GGGTGTGTAGGTACCCGTAT 58.219 55.000 8.74 0.00 46.42 3.06
2148 2790 3.281332 GGGTGTGTAGGTACCCGTA 57.719 57.895 8.74 0.00 46.42 4.02
2149 2791 4.118584 GGGTGTGTAGGTACCCGT 57.881 61.111 8.74 0.00 46.42 5.28
2152 2794 1.410153 CCGTATGGGTGTGTAGGTACC 59.590 57.143 2.73 2.73 36.21 3.34
2153 2795 2.378038 TCCGTATGGGTGTGTAGGTAC 58.622 52.381 0.00 0.00 37.00 3.34
2154 2796 2.760092 GTTCCGTATGGGTGTGTAGGTA 59.240 50.000 0.00 0.00 37.00 3.08
2155 2797 1.551883 GTTCCGTATGGGTGTGTAGGT 59.448 52.381 0.00 0.00 37.00 3.08
2156 2798 1.134610 GGTTCCGTATGGGTGTGTAGG 60.135 57.143 0.00 0.00 37.00 3.18
2157 2799 1.134610 GGGTTCCGTATGGGTGTGTAG 60.135 57.143 0.00 0.00 37.00 2.74
2158 2800 0.903942 GGGTTCCGTATGGGTGTGTA 59.096 55.000 0.00 0.00 37.00 2.90
2159 2801 1.681076 GGGTTCCGTATGGGTGTGT 59.319 57.895 0.00 0.00 37.00 3.72
2160 2802 1.448893 CGGGTTCCGTATGGGTGTG 60.449 63.158 0.00 0.00 42.73 3.82
2161 2803 2.983791 CGGGTTCCGTATGGGTGT 59.016 61.111 0.00 0.00 42.73 4.16
2171 2813 2.200337 AGTTGGCAAAGCGGGTTCC 61.200 57.895 0.00 0.00 0.00 3.62
2172 2814 1.007387 CAGTTGGCAAAGCGGGTTC 60.007 57.895 0.00 0.00 0.00 3.62
2173 2815 1.040339 TTCAGTTGGCAAAGCGGGTT 61.040 50.000 0.00 0.00 0.00 4.11
2174 2816 1.040339 TTTCAGTTGGCAAAGCGGGT 61.040 50.000 0.00 0.00 0.00 5.28
2175 2817 0.318120 ATTTCAGTTGGCAAAGCGGG 59.682 50.000 0.00 0.00 0.00 6.13
2176 2818 1.669795 GGATTTCAGTTGGCAAAGCGG 60.670 52.381 0.00 0.00 0.00 5.52
2177 2819 1.000385 TGGATTTCAGTTGGCAAAGCG 60.000 47.619 0.00 0.00 0.00 4.68
2178 2820 2.802247 GTTGGATTTCAGTTGGCAAAGC 59.198 45.455 0.00 0.00 0.00 3.51
2179 2821 4.326504 AGTTGGATTTCAGTTGGCAAAG 57.673 40.909 0.00 0.00 0.00 2.77
2180 2822 7.531857 TTATAGTTGGATTTCAGTTGGCAAA 57.468 32.000 0.00 0.00 0.00 3.68
2181 2823 7.232534 AGTTTATAGTTGGATTTCAGTTGGCAA 59.767 33.333 0.00 0.00 0.00 4.52
2182 2824 6.719370 AGTTTATAGTTGGATTTCAGTTGGCA 59.281 34.615 0.00 0.00 0.00 4.92
2183 2825 7.158099 AGTTTATAGTTGGATTTCAGTTGGC 57.842 36.000 0.00 0.00 0.00 4.52
2184 2826 9.981114 AAAAGTTTATAGTTGGATTTCAGTTGG 57.019 29.630 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.