>input_sequence_86828
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-------------------------------------------------------------ATGAGCGACTGCATGTGGT
TGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCCGCGGCGTCGAAGCGGGGG
AGGTCGCAGCCGTGGGGTTGCCACCGCCACCGGAGGATGGACTCGATACCGGGCTTGCCGTACTTCATGCAGTCCTGCCG
AGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAG----------------------------------------------
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>chr6A_1_TraesCS6A01G290100
GGACGAATAAAAATTAGCAGGATGCCAATCATGTCAGCAAATGGAGCAGCACCTCGCTCCAAGCGTCGACGGGGCCGGGC
AGGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGCCCGGGGTGCCCGTCGCC
CCTCATCTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCC------------CCGCCGCCGA---------CGCGG
CCCGGAACTCCTCCACCTGCGCAGCGTGGAACGCGACCTCGGTCTCCGGAGGACTGCTCTCGTCCATCAGCACGAACCTC
CCCGCCGCCGACGCGGTCCAGAACTCCTCCACCTGCGCGACGTGAAACGCGGCCTCGGTCTCCGGTAGACTGGTCTCGTT
GCTCCGCATGGGCCCCGTCCTCAGGCAGTTTCCTCCGTCGTACCATTTGCCGTTCTCGTAGTGCGGGGGCGCCACCGTCC
GGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCACCGCGTAGTGCGGGGCC
ACGGCGGTGGCGTTGTACTTGGCCTCGCAGCCGTCGAGGTTGGCGCAGCCGAGGAGGCGGCCGCCCTCGTAGAGCACGGT
GGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCAGCGACGTCGCGGCTCCACTCCGGGTCCGGCT
CGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACCGCACCAGGAACGGCGTC
CAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAGTCCTTGGGCTCGATCTC
CCTCGGGTGCTCCACCTGCATGCACATGCGCGCGCCGGGCGGTAACCGAGAAATCAACACACGCGATCGAGCGAGCTCAA
GATGGCAACGCAACGGTGATCGATCTAGTGGAAGTGGGCATGTACCTCGGCGAGCAGGCACATGAGCGACTGCATGTGGT
TGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCCGCGGCGTCGAAGCGGGGG
AGGTCGCAGCCGTGGGGTTGCCACCGCCACCGGAGGATGGACTCGATACCGGGCTTGCCGTACTTCATGCAGTCCTGCCG
AGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT---------------------------------------------
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------------------------------------------------------------------AGGGCGCGGCCGGG
TCGGGCACCCACTCGCCCTTGGCCACGTCGCACGCCACTCCGGCATTGCTGTCGCTCGCGCGGGA------TCCCGCCGC
GGCAGTGGAGGAGG---CCAGGATGACGGGCACGCCGACGAGCAACTGCTCGGTGTAGAGCGCCGAGTAGTTGGACGCCG
TGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAAGCTGCCCTCCGGACGACGTGGTTGTTGGGCTTCATT
GCATCCCAAAGACCCAAACTCACCGGG--AGGCAGATTCAGTTCATGG-TTCACTCTTGTAGATCTCACCG--------G
GAGATCTGGAATAATTT----TGCTGTCTTGCTGGACGAACATGTGCCACTCGGTCGAGCACGTAGCTGACTACTTGA-G
GAAAGTCAACACTTTGAGTACTTTTCTCCAA--GACGAACGACGTGCTCTGC-CCATCGAGATAGCCATTCCGTCTTTCC
TGAAAAACGTATCAGAGCGTATCGGATCGACTAGCTGTAGTACTACAAACGGG-AACATATCTAATCTAGCGTCTCCTGC
AAGGGCTCTCCATTCTTCTCTCGTGCCTCCCTTCCCTTGCATTAGAGCATCTTCAATGAATGATGTATATGCGAACCAAC
ATGTAGTTGAATGGTTAGAGGGACTGTGGTATTCCCAGCCCATCAGGGTTTCAAATCTTGGTGCTCGCATTTATTCCCGA
ATTTATTTTATGATTTCCGGCGATGCGCATTTACGACAAGGCGCCTACGGTGACTTCGTAAATCTCAAGATGGTATGCCG
GATCAGTCTTTCGAAGATGCTCATAGTGGTAGGGTGTGCGTGTGTGCGTTCATAAGAGTGAGTGTATGCGTGTCTATATG
AGCACTTGTGTCTGTACTGATATTAAAAAAATGAATGATGCATATTTAAATATACGAAATTGCTAGACATACGGGTACCT
ACACACCCATACGGAACCCGCTTTGCCAACTGAAATCCAACTATAAACTTTTAC
>chr6A_1
GGACGAAGAAAAATTAGCAGGATGCCAATCATGTCAGTAAATGGAGCAGCACCTCGCTCCAAGCGTCGACGGGGCCGGGC
AAGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGTCCGGGGTGCGCGTCGCC
CCTCATCTGCATCATCTCGCTCACGTCCATCAGCCCGAACCGCCCCTCCGAGGCCGCCGCCGCCGA---------CGCGG
CCCGGAACTCCTCCACCTGCGC----------------------------------------------------------
--------------------------------------GACGTGAAACGCAGCCTCGGTCTCCGGTAGGCTGGTCTCGTT
GCTCCGCATGGGCCCCGTCCTCAGGCAGTTTCCTCCGTCGTCCCACTTCCCGTTCTCGTAGTGCGGGGGCGCCACCGTCC
GGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCACCGCGTAGTGCGGGGCC
ACGGCGGTGGCGTTGTGCTTGGCCTCGCAGCTGTCGACGTTGGCGCAGCCGAGGAGGCGGCCGCCCTCGTAGAGCACGGT
GGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCTCCACTCCGGGTCCGGCT
CGTCCAGGTACAAGTTCTGCGGGTCCATGAACTTCTGCCCGCCGGCGTGCGTCACGTTCCACCGCACCAGGAACGGCGTC
CAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAATGGTACTTGCGCGTGCAGTGCACGCAGTCCTTGGGCTCGATCTC
CCTCGGGTGCTCCACCTGCATGCACATGCGCGCGCCGGGCGGTAACCGAGAAATCAACACACGCGATCGAGCGAGCTCAA
GATGGCAACGCAACGGTGATCGATCTAGTGGAAGTGGGCATGTACCTCGGCGAGCAGGCACATGAGCGACTGCATGTGGT
TGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCCGCCGCGTCGAAGCGGGGG
AGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGATGATGGACTCGATCCCGGGCTTGCCGTACATCATGCAGTCCTGCCG
GGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT---------------------------------------------
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------------------------------------------------------------------AGGGCGCGACCGGG
TCGGGCACCCATTCGCCCCTCGCCACGTCGCACGCCAGTCCGGCGTTGCCATCGCTCGCGCGGGA------TCCCGCCGT
GGCAGAGGAGTAGC---CCGGGGTGGCGGGCACGCCGACGAGCAACTGCTCGGTGTAGAGCGACGAGTAGTTGGACGCCG
TGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAAGCTGCCCTCCGGACGGCCTGGTTGTTGGGTTTCATT
GCGTCCCAGGCTCACA---------GG--AGGCAGATTCAGTTGATGGCTTCATTCTTGTAGGTCTCACGGCTCTCACCG
GAGATATGGAATAATTTGCAATGCTGTCTCGCCGGACGAACATGTGCCACTTGATGGAGCACGTACCTGACTACTTAT--
GAAAGTCAACACTTTGAGTACTTCTTTTCCCCTGACTAACGACGTGCTCTCC-CCACCGAGATAGCCAT-CCGTCTTTCC
TGAATAATAATGCATCAGAGC-----------------------------------------------------------
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>chr6D_23
----------------------TGCAAATCATGTCAGCAAATGCAGCAGCAGCTCGCTCCAAGCGTCGACGGGGCCGGGC
AAGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGCGGCCAGTGCCCGTACTGCCCGGGGTGCCCGTCGCC
CCTCATCTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCC------------CCGCCGCCGCCTCCGCCGTCGCGG
CCCGGAACTCCTCCACCTGCGC----------------------------------------------------------
--------------------------------------GGCGTGGAACGCGGCCTCGGTCTCCGGAAGGCTGCTCTCGTT
GCTCAGCAGGGGCCCCGTCCTCAGGCAGTTGCCGCCGTCGTACCACTTGCCGTTCTCGTAGTGCGGGGGCGCCACCGTCC
GGACGACCACCCGGCCGCGGAACCCGGCGAGCGCCCTGAGCGCGGTCCGGAACGACGCGCGCATCGCGTAGTGCGGCGCC
ACGGCGGTGGCGTTGTGCTTGGCCTGGCAGCCGTCGACGTTGGCGCAGCCGAGGAGGCGGCCGCCCTCGTAGAGCACGGT
GGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCTCCACTCCGGGTCCGGCT
CGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACCGCACCAGGAACGGCGTC
CAGAACACGCACACCGTGAAGCCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAGTCCTTGGGCTCGATCTC
CCTCGGCTGCTCCACCTGCATGCCCATGCGCGCGCCGGCCGGCAACCAAGAAATCAACAC----------GCGAGCTCAT
GATGGCAACGCAATGGTGGTCGATCGAGTGGAAGCGGGCATGTACCTCGGCGAGCAGGCACATGAGCGACTGCATGTGGT
TGCGCGCGACGGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCGGCGGCGTCGAAGCGGGGG
AGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGAGGATGGAGTCGATCCCGGGCTTGCCGTACTTCATGCAGTCCTGCCG
GGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGT---------------------------------------------
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------------------------------------------------------------------AGGGCGCGGCCGGG
TCGGGCACCCACTCGCCCTTGGCCACGTCGCACGCCGCTCCGGCATTGCTGTCGCTCGCGCGGGATCCCGATCCCGCCGC
GGCAGTGGAGGAGGAGGACGGGGTGGCGGGCACGGCGACGAGCAACTGCTCGGTGTAGAGCGACGAGTAGTTGGACGCCG
TGAAGGCGACGAGCAGGAGGATGAGGAGCAGCCCGCTGGTGGAGGCTGCCCTCCGGACGGCCTGGTTGTTGGGCTTCATT
GCGTCCCAGGCTCACA---------GGGGAGGCGGACTCAGTTGATGGCTTCATTCTTGTAGGTCTCACCG--------G
GAGATCTGGAATAATTTGCAATGCTGTCTCACTGGACGAACATGTGCCACTTGATCGAGCACGTAGCTGACTACTTGATG
GAAAGTCAACACTTTGAGTACTTTTTTCCCCCTGACGAACGACGTGCTCTCCTCCACCGAGATAGCCAT-CCGTCTTTCC
TGAAGAATGTATCAGAGCGTATCGGATCGACTAGCTGGAGTACTGTAAATGGGAAACATATCTAATCTAGCGTCTCCGGC
GACGTCTCTCCGTTCTTCTCTCTCGCCTCGCTT-----------------------------------------------
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>chr6B_23
----------------------TGCAAATCATGTCAGCAAATGCAGCAGCAGTTCGCTCCAAGCGTCGACGGGCCCGGGC
AGGCACCAGTGCACGCAGTCGATGCCGAAGCCGACCTTCTCGTGTGGCCAGTGCCCGTACTGCCCGGGGTGCCCGTCGCC
CCTCATTTGCATCATCTCGCTCACGTCCATCAGCACGAACCTCC------------CCGCCGCCGCCTCCGCCGTCGCGG
CCCGGAACTCCTCCACCTGCGC----------------------------------------------------------
--------------------------------------GGCGTGGAACGCGCCCTCGGTCTCCGGAAGACTGCTCTCGTT
GTTCAGCAGGGGCCCCGTCCTCAGGCAGTTGCCGCCGTCGTACCACTTGCCGTTCTCGTAGTGCGGGGGCGCCACCGTCC
GGACGACCACCCGGCCGCGGAACCCCGCGAGCGCCCGGAGCGCGGTCCGGAACGACGCGCGCACCGCGTAGTGCGGCGAC
ACGGCGGTGGCGTTGTGCTTGGCCACGCAGCCGTCGACGTTTGCGCAGCCGAGGAGGCGGCCGCCCTCGTAGAGCACGGT
GGGGCGGGTGAACCACTTGGCGCCGTTGAGGACGACGTAGTCGTAGCCGGCGACGTCGCGGCTCCACTCCGGGTCCGGCT
CGTCCAGGTACACGTTGTGCGGGTCCATGAACTGCTGCCCGCCGGCGCGCGTCAGGTTCCACCGCACCAGGAACGGCGTC
CAGAACACGCACACCGTGAAGTCGTGCTCCCGGTAGTGGTACTTGCGCGTGCAGTGCACGCAGTCCTTGGGCTCGATCTC
CCGCGGCTGCTCCACCTGCATGCCCATGCGCGCGCCGGGCGGCAACCAGGAAATCAACACACGCGATCGAGCGAGCTCAT
GATGGCAACGCAATGGTGGTCGATCGAGTGGAGGTGGACATGTACCTTAGCGAGCAGGCACATGAGCGACTGCATGTGGT
TGCGCGCGACAGAGTCCCCGACGAAGGCCATGGACTTGCCGCGGACGAGGCGGAGGAAGGCGGCGGCGTCGAAGCGGGGG
AGGTCGCAGCCGTGGGGCTGCCACCGCCACCGGAGGATGGACTCGATCCCGGGCTTGCCGTACTTCATGCAGTCCTGCCG
GGCGTCGATCAGCGGGCACGTCGCGTTGGTGTAGTCGTAGTAGCCGGAAACGGGGAACGGTGGGCCGTCCCTCGAATCAG
ATTCAGGAACAAAGGTCGATTCGGTAAGATTCGATGTGGATTCGGTGTTTCCGCAGTTGGATCGTCGATTCAGGTTCGGC
GACTCGACAGTCTTGGTTCTTGAATCGATCGAGTAAGCAAAAGGTCAGCCATATCAATCACGAACTCCTCGTTTTAATTT
CTGCCCCGTTCTTTTCCACTCCTCTAAATAACTCCTTATTCTGCTCTCCAATTACTCCAAGGCTGCTAATAAATTTTCCA
TTAGGAATGAGATAATATATTTTAGTCTTCATGAATCGACGATGCAGCCAGTTCCCTGTATAAGTACTCCCTCGGTCCCT
CCCAGCCAGTTGTTCCCCGCACCCGTAAAGATTCACGTTCCTCGTTCCATGGTACCGTACCGGATTCATCGTACCGGAAT
TGATTGGATCGCGTTTCCGTTTTAGAAAAATCGTTCTAGAGATGTATACCCTCACTGTACCCTATTTTTTCCGGCCCCCG
ACTCTCGTCCCCCGTTCCCGTTCCTCGTTCCCATCGTACCGAAAACATGGCAACTATGGGTGTAGTAGGGCACGGCCGGG
TCGGGCACCCACTCGCCCCTCGCCACGTCGCACGCCACTCCGGCATTGCTGTCGCTCGCGCGGGATCCCGTTCCCGCCGC
GGCAGAGGAGGAGGAGGCCGGGGTGGCGGGCACCGCGACGAGCAGCTGCTCAGTGTAGAGCGACGAGTAGTTGGACGCCG
TGAAGGCGACGAGCAGGAGGATGAGGAGCAACCCGCTGGTGGAGGCTGCCCTCCGCACGGCCTGGTTGTTGGGCTTCGTT
GCATCCCAGACTCACA----------GGGAGGCAGATTCAATTAATGGCTTCATTCTTGTAGATCACACCG--------G
GAGATCTGGAATAATTTGCATTGCTGTCTCGCTGGACGAACATGTGCCACTTGATCGAGCACGTAGCTGACTACTTGA-G
GAAAGTCAACACTTGAGTAC--TTTTCCCCAATGACAAACGACGTGCTCTCG-CCACCAT--------T-CCTTCTTTCC
TGAAGAATGTATCAGAGCGTATCGGATCGCCTAGCTGGAGTACTACAAATGGGAAACATGTCTAATCCAGCGTCTCCTGC
AACGTCTCTCCGTTCTTCT-------------------------------------------------------------
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>SNPs
-------S------------------------------------------------------------------------
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----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
---------------------------------------------S----------------------------------
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----------------S--------------------S------------------------------------------
------------------------------------------------S-------------------------------
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-----------------S-----------------------------S--------------------------------
S-------------------------------------------------------------------------------
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-------------------S--S--S------------------------------------S-----------------
-----------------------------------------------------------S-S------------------
--------S-SS-S--SSSSSSSSS------------------S---------S--------------------------
-----------------------------S---------------------S-S--------------------------
-------------------------S---S--------------------S-----S------------S----------
----S--S-----------------------------S-----------S------------------------------
--S-S------S----------SS-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_317
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---------------------------------------------------------TCTCGTCCATCAGCACGAAC---
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>reverse_2583
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----------------------ATGCGCATTTACGACAAGGC--------------------------------------
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