Multiple sequence alignment - TraesCS6A01G288800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G288800 chr6A 100.000 3139 0 0 1 3139 520844911 520848049 0.000000e+00 5797.0
1 TraesCS6A01G288800 chr6A 89.831 59 5 1 636 693 422376094 422376152 1.210000e-09 75.0
2 TraesCS6A01G288800 chr6B 90.967 1572 61 22 729 2245 566342228 566343773 0.000000e+00 2041.0
3 TraesCS6A01G288800 chr6B 82.031 640 54 26 2332 2932 566343856 566344473 3.640000e-134 488.0
4 TraesCS6A01G288800 chr6B 90.722 291 23 3 414 704 566341105 566341391 4.910000e-103 385.0
5 TraesCS6A01G288800 chr6D 89.976 1237 52 19 1045 2245 379981674 379980474 0.000000e+00 1531.0
6 TraesCS6A01G288800 chr6D 87.977 707 65 10 3 704 379983590 379982899 0.000000e+00 817.0
7 TraesCS6A01G288800 chr6D 90.452 398 26 7 2335 2725 379980046 379979654 6.000000e-142 514.0
8 TraesCS6A01G288800 chr6D 91.667 300 25 0 403 702 379982767 379982468 1.740000e-112 416.0
9 TraesCS6A01G288800 chr6D 84.156 385 11 15 706 1045 379982387 379982008 8.390000e-86 327.0
10 TraesCS6A01G288800 chr6D 87.952 249 11 6 2721 2950 379979230 379978982 3.080000e-70 276.0
11 TraesCS6A01G288800 chr6D 95.238 42 2 0 1660 1701 27035054 27035013 2.020000e-07 67.6
12 TraesCS6A01G288800 chr5A 86.029 136 19 0 3004 3139 538101432 538101297 2.520000e-31 147.0
13 TraesCS6A01G288800 chr2A 82.911 158 25 1 2984 3139 126992969 126992812 1.170000e-29 141.0
14 TraesCS6A01G288800 chr2B 80.925 173 25 7 530 696 243791377 243791207 2.540000e-26 130.0
15 TraesCS6A01G288800 chr3A 80.952 147 28 0 2989 3135 555545317 555545463 1.980000e-22 117.0
16 TraesCS6A01G288800 chr1B 81.818 143 21 5 2985 3125 331097848 331097709 7.110000e-22 115.0
17 TraesCS6A01G288800 chr7B 94.444 54 3 0 639 692 368197935 368197882 2.010000e-12 84.2
18 TraesCS6A01G288800 chr1D 91.837 49 4 0 643 691 472005032 472004984 5.620000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G288800 chr6A 520844911 520848049 3138 False 5797.000000 5797 100.000000 1 3139 1 chr6A.!!$F2 3138
1 TraesCS6A01G288800 chr6B 566341105 566344473 3368 False 971.333333 2041 87.906667 414 2932 3 chr6B.!!$F1 2518
2 TraesCS6A01G288800 chr6D 379978982 379983590 4608 True 646.833333 1531 88.696667 3 2950 6 chr6D.!!$R2 2947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.036765 GAGGACACACCGGCATAACA 60.037 55.0 0.00 0.0 44.74 2.41 F
354 356 0.173708 ACTAGCTAGACGCACAAGGC 59.826 55.0 27.45 0.0 42.61 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 3738 0.894835 AAACCCGCCAATTCACATCC 59.105 50.0 0.00 0.0 0.00 3.51 R
2330 4022 0.106708 TTTGCTGCAAGAGTCGTCCT 59.893 50.0 15.39 0.0 34.07 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.395525 TCATACATCTCTAACCTACCTCTCT 57.604 40.000 0.00 0.00 0.00 3.10
43 44 1.033574 CTAACCTACCTCTCTGGGCG 58.966 60.000 0.00 0.00 41.11 6.13
61 62 1.664965 GCACCGACTCATATCCGCC 60.665 63.158 0.00 0.00 0.00 6.13
62 63 1.739667 CACCGACTCATATCCGCCA 59.260 57.895 0.00 0.00 0.00 5.69
64 65 0.828022 ACCGACTCATATCCGCCAAA 59.172 50.000 0.00 0.00 0.00 3.28
66 67 1.217882 CGACTCATATCCGCCAAACC 58.782 55.000 0.00 0.00 0.00 3.27
73 74 3.071023 TCATATCCGCCAAACCTAAGAGG 59.929 47.826 0.00 0.00 42.49 3.69
87 88 0.981183 AAGAGGACACACCGGCATAA 59.019 50.000 0.00 0.00 44.74 1.90
89 90 0.036765 GAGGACACACCGGCATAACA 60.037 55.000 0.00 0.00 44.74 2.41
95 96 1.398041 CACACCGGCATAACATGACAG 59.602 52.381 0.00 0.00 38.56 3.51
96 97 0.378257 CACCGGCATAACATGACAGC 59.622 55.000 0.00 0.00 38.56 4.40
97 98 0.748005 ACCGGCATAACATGACAGCC 60.748 55.000 0.00 6.43 38.56 4.85
156 157 4.735537 TCTCTAACCTAACTATCTCCCCCA 59.264 45.833 0.00 0.00 0.00 4.96
164 165 5.368523 CCTAACTATCTCCCCCATGTGTTTA 59.631 44.000 0.00 0.00 0.00 2.01
165 166 5.994416 AACTATCTCCCCCATGTGTTTAT 57.006 39.130 0.00 0.00 0.00 1.40
203 205 0.243636 GTATGGCGCCAAAGCAAAGT 59.756 50.000 36.33 17.32 39.83 2.66
215 217 5.104374 CCAAAGCAAAGTATATGCAAGGTG 58.896 41.667 0.00 0.00 46.22 4.00
245 247 4.077184 CGGGGCCGACAACAGCTA 62.077 66.667 0.00 0.00 42.83 3.32
258 260 7.371159 CCGACAACAGCTATATATGAAGAAGA 58.629 38.462 0.00 0.00 0.00 2.87
275 277 4.837972 AGAAGATTTTTCCTTAGCTCGCT 58.162 39.130 0.00 0.00 0.00 4.93
290 292 4.708177 AGCTCGCTATTTTGGTCATGTAT 58.292 39.130 0.00 0.00 0.00 2.29
291 293 5.126067 AGCTCGCTATTTTGGTCATGTATT 58.874 37.500 0.00 0.00 0.00 1.89
293 295 5.909610 GCTCGCTATTTTGGTCATGTATTTC 59.090 40.000 0.00 0.00 0.00 2.17
306 308 9.016438 TGGTCATGTATTTCTTTTAGTTTACCC 57.984 33.333 0.00 0.00 0.00 3.69
308 310 8.464404 GTCATGTATTTCTTTTAGTTTACCCCC 58.536 37.037 0.00 0.00 0.00 5.40
311 313 5.995565 ATTTCTTTTAGTTTACCCCCAGC 57.004 39.130 0.00 0.00 0.00 4.85
312 314 4.734843 TTCTTTTAGTTTACCCCCAGCT 57.265 40.909 0.00 0.00 0.00 4.24
314 316 5.846528 TCTTTTAGTTTACCCCCAGCTAA 57.153 39.130 0.00 0.00 0.00 3.09
345 347 5.707242 TGTGGTGCATATACTAGCTAGAC 57.293 43.478 27.45 12.32 0.00 2.59
347 349 3.190744 TGGTGCATATACTAGCTAGACGC 59.809 47.826 27.45 19.11 39.57 5.19
348 350 3.190744 GGTGCATATACTAGCTAGACGCA 59.809 47.826 27.45 21.13 42.61 5.24
354 356 0.173708 ACTAGCTAGACGCACAAGGC 59.826 55.000 27.45 0.00 42.61 4.35
433 437 0.969149 TCTTCTGGCAGACGATGTGT 59.031 50.000 18.55 0.00 0.00 3.72
468 472 3.126858 TCAATAAAGCACGTCATGAAGGC 59.873 43.478 13.36 12.57 0.00 4.35
472 476 2.472695 AGCACGTCATGAAGGCTTTA 57.527 45.000 13.36 0.00 0.00 1.85
515 947 2.282958 CCCCTCGCTAGGCCGATA 60.283 66.667 0.00 0.00 42.14 2.92
605 1037 5.031578 TGTATTCGTTTTGCTGTGTTGTTC 58.968 37.500 0.00 0.00 0.00 3.18
628 1060 3.488384 CGCTAAACCTTGTTGCACTTTGA 60.488 43.478 0.00 0.00 0.00 2.69
629 1061 4.620982 GCTAAACCTTGTTGCACTTTGAT 58.379 39.130 0.00 0.00 0.00 2.57
632 1064 2.665165 ACCTTGTTGCACTTTGATGGA 58.335 42.857 0.00 0.00 0.00 3.41
638 1070 1.674359 TGCACTTTGATGGACGTGTT 58.326 45.000 0.00 0.00 0.00 3.32
656 1088 1.743394 GTTGGATTTGTAAGGGCCTCG 59.257 52.381 6.46 0.00 0.00 4.63
711 1220 1.261480 ACGTCATGAAGGAGCTGAGT 58.739 50.000 13.36 0.00 0.00 3.41
716 1225 3.445450 GTCATGAAGGAGCTGAGTCTACA 59.555 47.826 0.00 0.00 0.00 2.74
759 2015 3.175240 CGAGCGAGCACAACGGAG 61.175 66.667 0.00 0.00 0.00 4.63
883 2154 4.266945 CAATTTTAAAGCGCGCACAAAAA 58.733 34.783 35.10 30.41 0.00 1.94
962 2248 0.613292 AAAGAGAGGGAGAGCGAGCA 60.613 55.000 0.00 0.00 0.00 4.26
1166 2804 1.820481 CTCCTCTCCGACTCCGACC 60.820 68.421 0.00 0.00 38.22 4.79
1573 3220 3.818787 TACTTCCTCGACGGCGGC 61.819 66.667 12.58 7.52 38.28 6.53
1607 3260 2.360350 ACATGCTGTTCGGGCAGG 60.360 61.111 8.72 0.00 45.30 4.85
1957 3625 3.805207 TCATCCTGCTGAATGATGACTG 58.195 45.455 0.00 0.00 39.81 3.51
1958 3626 2.034104 TCCTGCTGAATGATGACTGC 57.966 50.000 0.00 0.00 0.00 4.40
1964 3632 2.608546 GCTGAATGATGACTGCAGAGAC 59.391 50.000 23.35 11.72 0.00 3.36
1973 3641 4.193826 TGACTGCAGAGACCAGTAATTC 57.806 45.455 23.35 2.95 43.17 2.17
2060 3728 0.911769 TTGATCATGAAGGGGAGCGT 59.088 50.000 0.00 0.00 0.00 5.07
2070 3738 0.107017 AGGGGAGCGTGGATGAAATG 60.107 55.000 0.00 0.00 0.00 2.32
2134 3808 8.138365 TGATACTACGAATAAGGTGCATTTTC 57.862 34.615 0.00 0.00 0.00 2.29
2138 3812 8.500753 ACTACGAATAAGGTGCATTTTCAATA 57.499 30.769 0.00 0.00 0.00 1.90
2146 3820 9.730420 ATAAGGTGCATTTTCAATACGAATAAC 57.270 29.630 0.00 0.00 32.32 1.89
2206 3898 6.668541 TGCAAAGAGAAGGAATAAGAATCG 57.331 37.500 0.00 0.00 0.00 3.34
2208 3900 5.504830 GCAAAGAGAAGGAATAAGAATCGCC 60.505 44.000 0.00 0.00 0.00 5.54
2249 3941 2.893637 GCTGAACGATATCTGTGGTGT 58.106 47.619 0.34 0.00 0.00 4.16
2250 3942 4.041740 GCTGAACGATATCTGTGGTGTA 57.958 45.455 0.34 0.00 0.00 2.90
2251 3943 4.430007 GCTGAACGATATCTGTGGTGTAA 58.570 43.478 0.34 0.00 0.00 2.41
2252 3944 5.050490 GCTGAACGATATCTGTGGTGTAAT 58.950 41.667 0.34 0.00 0.00 1.89
2253 3945 5.523916 GCTGAACGATATCTGTGGTGTAATT 59.476 40.000 0.34 0.00 0.00 1.40
2255 3947 6.873997 TGAACGATATCTGTGGTGTAATTCT 58.126 36.000 0.34 0.00 0.00 2.40
2256 3948 8.002984 TGAACGATATCTGTGGTGTAATTCTA 57.997 34.615 0.34 0.00 0.00 2.10
2257 3949 7.919091 TGAACGATATCTGTGGTGTAATTCTAC 59.081 37.037 0.34 0.00 0.00 2.59
2258 3950 7.342769 ACGATATCTGTGGTGTAATTCTACA 57.657 36.000 0.34 0.00 35.61 2.74
2259 3951 7.952671 ACGATATCTGTGGTGTAATTCTACAT 58.047 34.615 0.34 0.00 40.16 2.29
2260 3952 7.867909 ACGATATCTGTGGTGTAATTCTACATG 59.132 37.037 0.34 0.00 40.16 3.21
2262 3954 9.764363 GATATCTGTGGTGTAATTCTACATGAA 57.236 33.333 0.00 0.00 40.16 2.57
2263 3955 9.770097 ATATCTGTGGTGTAATTCTACATGAAG 57.230 33.333 0.00 0.00 40.16 3.02
2264 3956 7.239763 TCTGTGGTGTAATTCTACATGAAGA 57.760 36.000 0.00 0.00 40.16 2.87
2265 3957 7.851228 TCTGTGGTGTAATTCTACATGAAGAT 58.149 34.615 0.00 0.00 40.16 2.40
2266 3958 8.321353 TCTGTGGTGTAATTCTACATGAAGATT 58.679 33.333 0.00 0.00 40.16 2.40
2267 3959 8.862325 TGTGGTGTAATTCTACATGAAGATTT 57.138 30.769 0.00 0.00 40.16 2.17
2268 3960 8.729756 TGTGGTGTAATTCTACATGAAGATTTG 58.270 33.333 0.00 0.00 40.16 2.32
2269 3961 8.184192 GTGGTGTAATTCTACATGAAGATTTGG 58.816 37.037 0.00 0.00 40.16 3.28
2270 3962 7.148086 TGGTGTAATTCTACATGAAGATTTGGC 60.148 37.037 0.00 0.00 40.16 4.52
2271 3963 7.067494 GGTGTAATTCTACATGAAGATTTGGCT 59.933 37.037 0.00 0.00 40.16 4.75
2272 3964 8.462016 GTGTAATTCTACATGAAGATTTGGCTT 58.538 33.333 0.00 0.00 40.16 4.35
2274 3966 7.472334 AATTCTACATGAAGATTTGGCTTGT 57.528 32.000 0.00 0.00 38.18 3.16
2275 3967 6.899393 TTCTACATGAAGATTTGGCTTGTT 57.101 33.333 0.00 0.00 0.00 2.83
2276 3968 6.500684 TCTACATGAAGATTTGGCTTGTTC 57.499 37.500 0.00 0.00 0.00 3.18
2277 3969 6.240894 TCTACATGAAGATTTGGCTTGTTCT 58.759 36.000 0.00 0.00 0.00 3.01
2278 3970 5.382618 ACATGAAGATTTGGCTTGTTCTC 57.617 39.130 0.00 0.00 0.00 2.87
2279 3971 4.219288 ACATGAAGATTTGGCTTGTTCTCC 59.781 41.667 0.00 0.00 0.00 3.71
2280 3972 3.831323 TGAAGATTTGGCTTGTTCTCCA 58.169 40.909 0.00 0.00 0.00 3.86
2281 3973 3.822735 TGAAGATTTGGCTTGTTCTCCAG 59.177 43.478 0.00 0.00 33.32 3.86
2282 3974 3.795688 AGATTTGGCTTGTTCTCCAGA 57.204 42.857 0.00 0.00 33.32 3.86
2283 3975 3.683802 AGATTTGGCTTGTTCTCCAGAG 58.316 45.455 0.00 0.00 33.32 3.35
2284 3976 3.328931 AGATTTGGCTTGTTCTCCAGAGA 59.671 43.478 0.00 0.00 33.32 3.10
2285 3977 3.795688 TTTGGCTTGTTCTCCAGAGAT 57.204 42.857 0.00 0.00 37.29 2.75
2286 3978 2.775911 TGGCTTGTTCTCCAGAGATG 57.224 50.000 0.00 0.00 37.29 2.90
2287 3979 1.339438 TGGCTTGTTCTCCAGAGATGC 60.339 52.381 0.00 1.87 37.29 3.91
2288 3980 1.065564 GGCTTGTTCTCCAGAGATGCT 60.066 52.381 0.00 0.00 37.29 3.79
2289 3981 2.008329 GCTTGTTCTCCAGAGATGCTG 58.992 52.381 0.00 0.00 44.49 4.41
2290 3982 2.614987 GCTTGTTCTCCAGAGATGCTGT 60.615 50.000 0.00 0.00 43.33 4.40
2291 3983 3.368843 GCTTGTTCTCCAGAGATGCTGTA 60.369 47.826 0.00 0.00 43.33 2.74
2292 3984 4.431809 CTTGTTCTCCAGAGATGCTGTAG 58.568 47.826 0.00 0.00 43.33 2.74
2293 3985 2.762887 TGTTCTCCAGAGATGCTGTAGG 59.237 50.000 0.00 0.00 43.33 3.18
2306 3998 3.641437 GCTGTAGGCAACACAAATTCA 57.359 42.857 0.00 0.00 41.35 2.57
2309 4001 4.990426 GCTGTAGGCAACACAAATTCAAAT 59.010 37.500 0.00 0.00 41.35 2.32
2310 4002 5.466393 GCTGTAGGCAACACAAATTCAAATT 59.534 36.000 0.00 0.00 41.35 1.82
2311 4003 6.346838 GCTGTAGGCAACACAAATTCAAATTC 60.347 38.462 0.00 0.00 41.35 2.17
2312 4004 5.988561 TGTAGGCAACACAAATTCAAATTCC 59.011 36.000 0.00 0.00 41.41 3.01
2313 4005 5.294734 AGGCAACACAAATTCAAATTCCT 57.705 34.783 0.00 0.00 41.41 3.36
2314 4006 5.683681 AGGCAACACAAATTCAAATTCCTT 58.316 33.333 0.00 0.00 41.41 3.36
2315 4007 5.528320 AGGCAACACAAATTCAAATTCCTTG 59.472 36.000 0.00 0.00 41.41 3.61
2316 4008 5.296531 GGCAACACAAATTCAAATTCCTTGT 59.703 36.000 0.00 0.00 36.34 3.16
2317 4009 6.193761 GCAACACAAATTCAAATTCCTTGTG 58.806 36.000 13.39 13.39 39.11 3.33
2320 4012 8.614346 CAACACAAATTCAAATTCCTTGTGATT 58.386 29.630 18.61 10.46 37.05 2.57
2321 4013 8.735692 ACACAAATTCAAATTCCTTGTGATTT 57.264 26.923 18.61 3.16 37.05 2.17
2322 4014 8.829612 ACACAAATTCAAATTCCTTGTGATTTC 58.170 29.630 18.61 0.00 37.05 2.17
2323 4015 9.048446 CACAAATTCAAATTCCTTGTGATTTCT 57.952 29.630 10.96 0.00 37.05 2.52
2324 4016 9.048446 ACAAATTCAAATTCCTTGTGATTTCTG 57.952 29.630 0.00 0.00 36.34 3.02
2326 4018 4.797471 TCAAATTCCTTGTGATTTCTGCG 58.203 39.130 0.00 0.00 36.34 5.18
2327 4019 2.927553 ATTCCTTGTGATTTCTGCGC 57.072 45.000 0.00 0.00 0.00 6.09
2328 4020 1.896220 TTCCTTGTGATTTCTGCGCT 58.104 45.000 9.73 0.00 0.00 5.92
2329 4021 1.442769 TCCTTGTGATTTCTGCGCTC 58.557 50.000 9.73 0.00 0.00 5.03
2330 4022 1.159285 CCTTGTGATTTCTGCGCTCA 58.841 50.000 9.73 0.00 0.00 4.26
2331 4023 1.129998 CCTTGTGATTTCTGCGCTCAG 59.870 52.381 9.73 0.00 41.67 3.35
2332 4024 1.129998 CTTGTGATTTCTGCGCTCAGG 59.870 52.381 9.73 0.00 40.69 3.86
2333 4025 0.321346 TGTGATTTCTGCGCTCAGGA 59.679 50.000 9.73 0.00 40.69 3.86
2337 4367 0.737715 ATTTCTGCGCTCAGGACGAC 60.738 55.000 9.73 0.00 40.69 4.34
2342 4372 1.803519 GCGCTCAGGACGACTCTTG 60.804 63.158 0.00 0.00 0.00 3.02
2353 4383 2.017049 ACGACTCTTGCAGCAAAGTTT 58.983 42.857 18.28 10.05 0.00 2.66
2377 4407 9.487790 TTTCATTTGAGAAACTGTGTTTCTTTT 57.512 25.926 21.62 5.44 38.73 2.27
2381 4411 9.657419 ATTTGAGAAACTGTGTTTCTTTTTGAT 57.343 25.926 21.62 11.87 38.73 2.57
2389 4419 6.599244 ACTGTGTTTCTTTTTGATGAGACAGA 59.401 34.615 0.00 0.00 36.69 3.41
2395 4425 2.775911 TTTGATGAGACAGAGCAGGG 57.224 50.000 0.00 0.00 0.00 4.45
2396 4426 0.251354 TTGATGAGACAGAGCAGGGC 59.749 55.000 0.00 0.00 0.00 5.19
2446 4476 5.466728 TCCTGAATCTGAAGTGAAACGAAAG 59.533 40.000 0.00 0.00 45.86 2.62
2482 4512 8.004801 CCAAATAAACTGGGGGAAATCTATACT 58.995 37.037 0.00 0.00 0.00 2.12
2483 4513 8.850156 CAAATAAACTGGGGGAAATCTATACTG 58.150 37.037 0.00 0.00 0.00 2.74
2484 4514 4.439253 AACTGGGGGAAATCTATACTGC 57.561 45.455 0.00 0.00 0.00 4.40
2487 4517 2.711009 TGGGGGAAATCTATACTGCCAG 59.289 50.000 0.00 0.00 0.00 4.85
2488 4518 2.553247 GGGGGAAATCTATACTGCCAGC 60.553 54.545 0.00 0.00 0.00 4.85
2490 4520 3.558109 GGGGAAATCTATACTGCCAGCTC 60.558 52.174 0.00 0.00 0.00 4.09
2491 4521 3.321497 GGAAATCTATACTGCCAGCTCG 58.679 50.000 0.00 0.00 0.00 5.03
2511 4556 1.401552 GTGTGTTTCTTGCTCTGCACA 59.598 47.619 0.00 0.00 38.71 4.57
2536 4581 0.179137 TGGCGCTTGAGATAGTGTCG 60.179 55.000 7.64 0.00 33.05 4.35
2539 4584 1.202973 CGCTTGAGATAGTGTCGCCG 61.203 60.000 0.00 0.00 0.00 6.46
2541 4586 0.249073 CTTGAGATAGTGTCGCCGGG 60.249 60.000 2.18 0.00 0.00 5.73
2587 4632 2.325082 CGGGACCTTTCTGCCGTTG 61.325 63.158 0.00 0.00 0.00 4.10
2863 5368 1.678269 CGTGCTCGCTCGAAAAGGAG 61.678 60.000 7.51 0.00 35.30 3.69
2964 5469 2.606751 TTTTTCCGGGGCAAATAGGA 57.393 45.000 0.00 0.00 0.00 2.94
2965 5470 2.137810 TTTTCCGGGGCAAATAGGAG 57.862 50.000 0.00 0.00 33.89 3.69
2966 5471 0.996583 TTTCCGGGGCAAATAGGAGT 59.003 50.000 0.00 0.00 33.89 3.85
2967 5472 0.996583 TTCCGGGGCAAATAGGAGTT 59.003 50.000 0.00 0.00 33.89 3.01
2968 5473 0.996583 TCCGGGGCAAATAGGAGTTT 59.003 50.000 0.00 0.00 0.00 2.66
2969 5474 1.356398 TCCGGGGCAAATAGGAGTTTT 59.644 47.619 0.00 0.00 0.00 2.43
2970 5475 1.476488 CCGGGGCAAATAGGAGTTTTG 59.524 52.381 0.00 0.00 37.18 2.44
2971 5476 2.167662 CGGGGCAAATAGGAGTTTTGT 58.832 47.619 0.00 0.00 36.63 2.83
2972 5477 2.560981 CGGGGCAAATAGGAGTTTTGTT 59.439 45.455 0.00 0.00 36.63 2.83
2973 5478 3.366985 CGGGGCAAATAGGAGTTTTGTTC 60.367 47.826 0.00 0.00 36.63 3.18
2974 5479 3.832490 GGGGCAAATAGGAGTTTTGTTCT 59.168 43.478 0.00 0.00 36.63 3.01
2975 5480 5.014202 GGGGCAAATAGGAGTTTTGTTCTA 58.986 41.667 0.00 0.00 36.63 2.10
2976 5481 5.656859 GGGGCAAATAGGAGTTTTGTTCTAT 59.343 40.000 0.00 0.00 36.63 1.98
2977 5482 6.831868 GGGGCAAATAGGAGTTTTGTTCTATA 59.168 38.462 0.00 0.00 36.63 1.31
2978 5483 7.340999 GGGGCAAATAGGAGTTTTGTTCTATAA 59.659 37.037 0.00 0.00 36.63 0.98
2979 5484 8.914011 GGGCAAATAGGAGTTTTGTTCTATAAT 58.086 33.333 0.00 0.00 36.63 1.28
2988 5493 9.516314 GGAGTTTTGTTCTATAATAATGCAACC 57.484 33.333 0.00 0.00 0.00 3.77
2989 5494 9.221775 GAGTTTTGTTCTATAATAATGCAACCG 57.778 33.333 0.00 0.00 0.00 4.44
2990 5495 7.700656 AGTTTTGTTCTATAATAATGCAACCGC 59.299 33.333 0.00 0.00 39.24 5.68
2991 5496 6.935741 TTGTTCTATAATAATGCAACCGCT 57.064 33.333 0.00 0.00 39.64 5.52
2992 5497 6.935741 TGTTCTATAATAATGCAACCGCTT 57.064 33.333 0.00 0.00 39.64 4.68
2993 5498 8.439993 TTGTTCTATAATAATGCAACCGCTTA 57.560 30.769 0.00 0.00 39.64 3.09
2994 5499 8.615878 TGTTCTATAATAATGCAACCGCTTAT 57.384 30.769 0.00 0.00 39.64 1.73
2995 5500 9.713713 TGTTCTATAATAATGCAACCGCTTATA 57.286 29.630 0.00 0.00 39.64 0.98
3004 5509 5.794687 TGCAACCGCTTATATATACATGC 57.205 39.130 0.00 0.00 39.64 4.06
3005 5510 5.241662 TGCAACCGCTTATATATACATGCA 58.758 37.500 0.00 0.00 39.64 3.96
3006 5511 5.879777 TGCAACCGCTTATATATACATGCAT 59.120 36.000 0.00 0.00 39.64 3.96
3007 5512 7.044798 TGCAACCGCTTATATATACATGCATA 58.955 34.615 0.00 0.00 39.64 3.14
3008 5513 7.011016 TGCAACCGCTTATATATACATGCATAC 59.989 37.037 0.00 0.00 39.64 2.39
3009 5514 7.011016 GCAACCGCTTATATATACATGCATACA 59.989 37.037 0.00 0.00 34.30 2.29
3010 5515 8.328146 CAACCGCTTATATATACATGCATACAC 58.672 37.037 0.00 0.00 0.00 2.90
3011 5516 7.782049 ACCGCTTATATATACATGCATACACT 58.218 34.615 0.00 0.00 0.00 3.55
3012 5517 7.921214 ACCGCTTATATATACATGCATACACTC 59.079 37.037 0.00 0.00 0.00 3.51
3013 5518 7.920682 CCGCTTATATATACATGCATACACTCA 59.079 37.037 0.00 0.00 0.00 3.41
3014 5519 9.468532 CGCTTATATATACATGCATACACTCAT 57.531 33.333 0.00 0.00 0.00 2.90
3024 5529 8.370493 ACATGCATACACTCATCACTATAAAC 57.630 34.615 0.00 0.00 0.00 2.01
3025 5530 7.169813 ACATGCATACACTCATCACTATAAACG 59.830 37.037 0.00 0.00 0.00 3.60
3026 5531 5.462068 TGCATACACTCATCACTATAAACGC 59.538 40.000 0.00 0.00 0.00 4.84
3027 5532 5.462068 GCATACACTCATCACTATAAACGCA 59.538 40.000 0.00 0.00 0.00 5.24
3028 5533 6.562270 GCATACACTCATCACTATAAACGCAC 60.562 42.308 0.00 0.00 0.00 5.34
3029 5534 4.816392 ACACTCATCACTATAAACGCACA 58.184 39.130 0.00 0.00 0.00 4.57
3030 5535 4.625742 ACACTCATCACTATAAACGCACAC 59.374 41.667 0.00 0.00 0.00 3.82
3031 5536 4.625311 CACTCATCACTATAAACGCACACA 59.375 41.667 0.00 0.00 0.00 3.72
3032 5537 4.625742 ACTCATCACTATAAACGCACACAC 59.374 41.667 0.00 0.00 0.00 3.82
3033 5538 3.610677 TCATCACTATAAACGCACACACG 59.389 43.478 0.00 0.00 39.50 4.49
3034 5539 1.722464 TCACTATAAACGCACACACGC 59.278 47.619 0.00 0.00 36.19 5.34
3035 5540 1.457683 CACTATAAACGCACACACGCA 59.542 47.619 0.00 0.00 36.19 5.24
3036 5541 1.458064 ACTATAAACGCACACACGCAC 59.542 47.619 0.00 0.00 36.19 5.34
3037 5542 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
3038 5543 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
3039 5544 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
3041 5546 3.648982 CGCACACACGCACACCAT 61.649 61.111 0.00 0.00 0.00 3.55
3042 5547 2.313909 CGCACACACGCACACCATA 61.314 57.895 0.00 0.00 0.00 2.74
3043 5548 1.634757 CGCACACACGCACACCATAT 61.635 55.000 0.00 0.00 0.00 1.78
3044 5549 0.096976 GCACACACGCACACCATATC 59.903 55.000 0.00 0.00 0.00 1.63
3045 5550 0.726827 CACACACGCACACCATATCC 59.273 55.000 0.00 0.00 0.00 2.59
3046 5551 0.613260 ACACACGCACACCATATCCT 59.387 50.000 0.00 0.00 0.00 3.24
3047 5552 1.828595 ACACACGCACACCATATCCTA 59.171 47.619 0.00 0.00 0.00 2.94
3048 5553 2.235155 ACACACGCACACCATATCCTAA 59.765 45.455 0.00 0.00 0.00 2.69
3049 5554 2.607635 CACACGCACACCATATCCTAAC 59.392 50.000 0.00 0.00 0.00 2.34
3050 5555 1.858458 CACGCACACCATATCCTAACG 59.142 52.381 0.00 0.00 0.00 3.18
3051 5556 1.752498 ACGCACACCATATCCTAACGA 59.248 47.619 0.00 0.00 0.00 3.85
3052 5557 2.223735 ACGCACACCATATCCTAACGAG 60.224 50.000 0.00 0.00 0.00 4.18
3053 5558 2.135933 GCACACCATATCCTAACGAGC 58.864 52.381 0.00 0.00 0.00 5.03
3054 5559 2.483013 GCACACCATATCCTAACGAGCA 60.483 50.000 0.00 0.00 0.00 4.26
3055 5560 3.803715 GCACACCATATCCTAACGAGCAT 60.804 47.826 0.00 0.00 0.00 3.79
3056 5561 3.990469 CACACCATATCCTAACGAGCATC 59.010 47.826 0.00 0.00 0.00 3.91
3057 5562 3.898123 ACACCATATCCTAACGAGCATCT 59.102 43.478 0.00 0.00 0.00 2.90
3058 5563 4.345257 ACACCATATCCTAACGAGCATCTT 59.655 41.667 0.00 0.00 0.00 2.40
3059 5564 4.926238 CACCATATCCTAACGAGCATCTTC 59.074 45.833 0.00 0.00 0.00 2.87
3060 5565 4.169508 CCATATCCTAACGAGCATCTTCG 58.830 47.826 0.00 0.00 45.70 3.79
3061 5566 4.082733 CCATATCCTAACGAGCATCTTCGA 60.083 45.833 2.12 0.00 43.03 3.71
3062 5567 5.393569 CCATATCCTAACGAGCATCTTCGAT 60.394 44.000 2.12 0.00 43.03 3.59
3063 5568 6.183360 CCATATCCTAACGAGCATCTTCGATA 60.183 42.308 2.12 0.00 43.03 2.92
3064 5569 4.485024 TCCTAACGAGCATCTTCGATAC 57.515 45.455 2.12 0.00 43.03 2.24
3065 5570 3.881089 TCCTAACGAGCATCTTCGATACA 59.119 43.478 2.12 0.00 43.03 2.29
3066 5571 3.975670 CCTAACGAGCATCTTCGATACAC 59.024 47.826 2.12 0.00 43.03 2.90
3067 5572 3.784701 AACGAGCATCTTCGATACACT 57.215 42.857 2.12 0.00 43.03 3.55
3068 5573 4.895224 AACGAGCATCTTCGATACACTA 57.105 40.909 2.12 0.00 43.03 2.74
3069 5574 4.895224 ACGAGCATCTTCGATACACTAA 57.105 40.909 2.12 0.00 43.03 2.24
3070 5575 4.849883 ACGAGCATCTTCGATACACTAAG 58.150 43.478 2.12 0.00 43.03 2.18
3071 5576 3.666334 CGAGCATCTTCGATACACTAAGC 59.334 47.826 0.00 0.00 43.03 3.09
3072 5577 3.983741 AGCATCTTCGATACACTAAGCC 58.016 45.455 0.00 0.00 0.00 4.35
3073 5578 2.726760 GCATCTTCGATACACTAAGCCG 59.273 50.000 0.00 0.00 0.00 5.52
3074 5579 3.309388 CATCTTCGATACACTAAGCCGG 58.691 50.000 0.00 0.00 0.00 6.13
3075 5580 1.066605 TCTTCGATACACTAAGCCGGC 59.933 52.381 21.89 21.89 0.00 6.13
3076 5581 0.818938 TTCGATACACTAAGCCGGCA 59.181 50.000 31.54 7.98 0.00 5.69
3077 5582 1.037493 TCGATACACTAAGCCGGCAT 58.963 50.000 31.54 21.32 0.00 4.40
3078 5583 2.232399 TCGATACACTAAGCCGGCATA 58.768 47.619 31.54 21.29 0.00 3.14
3079 5584 2.823747 TCGATACACTAAGCCGGCATAT 59.176 45.455 31.54 17.05 0.00 1.78
3080 5585 3.119602 TCGATACACTAAGCCGGCATATC 60.120 47.826 31.54 21.07 0.00 1.63
3081 5586 3.366985 CGATACACTAAGCCGGCATATCA 60.367 47.826 31.54 7.46 0.00 2.15
3082 5587 4.678044 CGATACACTAAGCCGGCATATCAT 60.678 45.833 31.54 12.37 0.00 2.45
3083 5588 3.045601 ACACTAAGCCGGCATATCATC 57.954 47.619 31.54 0.00 0.00 2.92
3084 5589 2.289694 ACACTAAGCCGGCATATCATCC 60.290 50.000 31.54 0.00 0.00 3.51
3085 5590 2.027745 CACTAAGCCGGCATATCATCCT 60.028 50.000 31.54 0.00 0.00 3.24
3086 5591 2.027745 ACTAAGCCGGCATATCATCCTG 60.028 50.000 31.54 9.76 0.00 3.86
3087 5592 1.059098 AAGCCGGCATATCATCCTGA 58.941 50.000 31.54 0.00 0.00 3.86
3088 5593 0.612229 AGCCGGCATATCATCCTGAG 59.388 55.000 31.54 0.00 0.00 3.35
3089 5594 0.610174 GCCGGCATATCATCCTGAGA 59.390 55.000 24.80 0.00 0.00 3.27
3090 5595 1.209019 GCCGGCATATCATCCTGAGAT 59.791 52.381 24.80 0.00 0.00 2.75
3091 5596 2.741228 GCCGGCATATCATCCTGAGATC 60.741 54.545 24.80 0.00 0.00 2.75
3092 5597 2.765135 CCGGCATATCATCCTGAGATCT 59.235 50.000 0.00 0.00 0.00 2.75
3093 5598 3.197333 CCGGCATATCATCCTGAGATCTT 59.803 47.826 0.00 0.00 0.00 2.40
3094 5599 4.403752 CCGGCATATCATCCTGAGATCTTA 59.596 45.833 0.00 0.00 0.00 2.10
3095 5600 5.347342 CGGCATATCATCCTGAGATCTTAC 58.653 45.833 0.00 0.00 0.00 2.34
3096 5601 5.105595 CGGCATATCATCCTGAGATCTTACA 60.106 44.000 0.00 0.00 0.00 2.41
3097 5602 6.573094 CGGCATATCATCCTGAGATCTTACAA 60.573 42.308 0.00 0.00 0.00 2.41
3098 5603 7.164122 GGCATATCATCCTGAGATCTTACAAA 58.836 38.462 0.00 0.00 0.00 2.83
3099 5604 7.333921 GGCATATCATCCTGAGATCTTACAAAG 59.666 40.741 0.00 0.00 0.00 2.77
3100 5605 7.877097 GCATATCATCCTGAGATCTTACAAAGT 59.123 37.037 0.00 0.00 0.00 2.66
3101 5606 9.421806 CATATCATCCTGAGATCTTACAAAGTC 57.578 37.037 0.00 0.00 0.00 3.01
3102 5607 6.857437 TCATCCTGAGATCTTACAAAGTCA 57.143 37.500 0.00 0.00 0.00 3.41
3103 5608 6.634805 TCATCCTGAGATCTTACAAAGTCAC 58.365 40.000 0.00 0.00 0.00 3.67
3104 5609 5.407407 TCCTGAGATCTTACAAAGTCACC 57.593 43.478 0.00 0.00 0.00 4.02
3105 5610 4.082190 TCCTGAGATCTTACAAAGTCACCG 60.082 45.833 0.00 0.00 0.00 4.94
3106 5611 4.322049 CCTGAGATCTTACAAAGTCACCGT 60.322 45.833 0.00 0.00 0.00 4.83
3107 5612 5.105877 CCTGAGATCTTACAAAGTCACCGTA 60.106 44.000 0.00 0.00 0.00 4.02
3108 5613 5.950883 TGAGATCTTACAAAGTCACCGTAG 58.049 41.667 0.00 0.00 0.00 3.51
3120 5625 4.555610 CCGTAGGCTCCTCGTAGT 57.444 61.111 0.00 0.00 46.14 2.73
3121 5626 2.319219 CCGTAGGCTCCTCGTAGTC 58.681 63.158 0.00 0.00 46.14 2.59
3122 5627 1.497223 CCGTAGGCTCCTCGTAGTCG 61.497 65.000 0.00 0.00 46.14 4.18
3123 5628 0.529337 CGTAGGCTCCTCGTAGTCGA 60.529 60.000 0.00 0.00 44.12 4.20
3124 5629 0.936600 GTAGGCTCCTCGTAGTCGAC 59.063 60.000 7.70 7.70 41.35 4.20
3136 5641 3.322230 GTAGTCGACGAGAATGTCTCC 57.678 52.381 10.46 0.00 40.34 3.71
3137 5642 2.116827 AGTCGACGAGAATGTCTCCT 57.883 50.000 10.46 0.00 40.34 3.69
3138 5643 2.011222 AGTCGACGAGAATGTCTCCTC 58.989 52.381 10.46 0.00 40.34 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.363711 GATATGAGTCGGTGCGCCCA 62.364 60.000 11.56 2.67 0.00 5.36
43 44 1.664965 GGCGGATATGAGTCGGTGC 60.665 63.158 0.00 0.00 0.00 5.01
61 62 2.413837 CGGTGTGTCCTCTTAGGTTTG 58.586 52.381 0.00 0.00 36.53 2.93
62 63 1.346722 CCGGTGTGTCCTCTTAGGTTT 59.653 52.381 0.00 0.00 36.53 3.27
64 65 1.542187 GCCGGTGTGTCCTCTTAGGT 61.542 60.000 1.90 0.00 36.53 3.08
66 67 0.537188 ATGCCGGTGTGTCCTCTTAG 59.463 55.000 1.90 0.00 0.00 2.18
73 74 1.396996 GTCATGTTATGCCGGTGTGTC 59.603 52.381 1.90 0.00 0.00 3.67
87 88 1.276138 TGTTGAGATCGGCTGTCATGT 59.724 47.619 0.00 0.00 0.00 3.21
89 90 2.996249 ATGTTGAGATCGGCTGTCAT 57.004 45.000 0.00 0.00 0.00 3.06
95 96 2.329379 GGTCGATATGTTGAGATCGGC 58.671 52.381 4.62 2.60 45.17 5.54
96 97 2.225727 TCGGTCGATATGTTGAGATCGG 59.774 50.000 4.62 0.00 42.41 4.18
97 98 3.537793 TCGGTCGATATGTTGAGATCG 57.462 47.619 0.00 0.00 43.30 3.69
98 99 5.303747 AGATCGGTCGATATGTTGAGATC 57.696 43.478 5.81 2.42 34.60 2.75
164 165 9.277783 GCCATACTGTCATGTTATTCTCTTAAT 57.722 33.333 0.00 0.00 0.00 1.40
165 166 7.438160 CGCCATACTGTCATGTTATTCTCTTAA 59.562 37.037 0.00 0.00 0.00 1.85
183 184 0.527565 CTTTGCTTTGGCGCCATACT 59.472 50.000 33.25 0.00 42.25 2.12
191 192 4.114794 CCTTGCATATACTTTGCTTTGGC 58.885 43.478 0.00 0.00 40.77 4.52
192 193 5.104374 CACCTTGCATATACTTTGCTTTGG 58.896 41.667 0.00 1.65 40.77 3.28
203 205 2.509548 AGTTGCCTCCACCTTGCATATA 59.490 45.455 0.00 0.00 34.51 0.86
230 232 3.056107 TCATATATAGCTGTTGTCGGCCC 60.056 47.826 0.00 0.00 46.23 5.80
258 260 6.152831 ACCAAAATAGCGAGCTAAGGAAAAAT 59.847 34.615 9.00 0.00 31.73 1.82
264 266 3.531538 TGACCAAAATAGCGAGCTAAGG 58.468 45.455 9.00 10.74 31.73 2.69
265 267 4.572389 ACATGACCAAAATAGCGAGCTAAG 59.428 41.667 9.00 0.50 31.73 2.18
266 268 4.513442 ACATGACCAAAATAGCGAGCTAA 58.487 39.130 9.00 0.00 31.73 3.09
267 269 4.137116 ACATGACCAAAATAGCGAGCTA 57.863 40.909 7.31 7.31 0.00 3.32
268 270 2.991250 ACATGACCAAAATAGCGAGCT 58.009 42.857 0.00 2.25 0.00 4.09
290 292 5.069518 AGCTGGGGGTAAACTAAAAGAAA 57.930 39.130 0.00 0.00 0.00 2.52
291 293 4.734843 AGCTGGGGGTAAACTAAAAGAA 57.265 40.909 0.00 0.00 0.00 2.52
293 295 6.008331 ACTTTAGCTGGGGGTAAACTAAAAG 58.992 40.000 0.00 0.00 39.50 2.27
306 308 5.221048 GCACCACAATATTACTTTAGCTGGG 60.221 44.000 0.00 0.00 0.00 4.45
308 310 6.435430 TGCACCACAATATTACTTTAGCTG 57.565 37.500 0.00 0.00 0.00 4.24
314 316 9.436957 GCTAGTATATGCACCACAATATTACTT 57.563 33.333 0.00 0.00 0.00 2.24
347 349 2.425562 AAAAACCCCTCGCCTTGTG 58.574 52.632 0.00 0.00 0.00 3.33
384 387 0.549169 TAACCCCCTCTTCACCCCTG 60.549 60.000 0.00 0.00 0.00 4.45
385 388 0.426022 ATAACCCCCTCTTCACCCCT 59.574 55.000 0.00 0.00 0.00 4.79
388 391 3.265995 TCAAGAATAACCCCCTCTTCACC 59.734 47.826 0.00 0.00 0.00 4.02
390 393 4.788075 TCATCAAGAATAACCCCCTCTTCA 59.212 41.667 0.00 0.00 0.00 3.02
392 395 5.674035 AGATCATCAAGAATAACCCCCTCTT 59.326 40.000 0.00 0.00 0.00 2.85
393 396 5.230759 AGATCATCAAGAATAACCCCCTCT 58.769 41.667 0.00 0.00 0.00 3.69
433 437 5.642919 GTGCTTTATTGATTGGCAAAATGGA 59.357 36.000 3.01 0.00 40.48 3.41
468 472 0.322187 CCGGTGGTGTCCCCTTAAAG 60.322 60.000 0.00 0.00 0.00 1.85
605 1037 0.951558 AGTGCAACAAGGTTTAGCGG 59.048 50.000 0.00 0.00 41.43 5.52
628 1060 3.756434 CCTTACAAATCCAACACGTCCAT 59.244 43.478 0.00 0.00 0.00 3.41
629 1061 3.142951 CCTTACAAATCCAACACGTCCA 58.857 45.455 0.00 0.00 0.00 4.02
632 1064 1.883926 GCCCTTACAAATCCAACACGT 59.116 47.619 0.00 0.00 0.00 4.49
638 1070 0.254747 CCGAGGCCCTTACAAATCCA 59.745 55.000 0.00 0.00 0.00 3.41
656 1088 3.001902 GCTTGCCCGGCCTTAAACC 62.002 63.158 7.03 0.00 0.00 3.27
711 1220 4.753662 AGACGCCCGCCCTGTAGA 62.754 66.667 0.00 0.00 0.00 2.59
738 1994 3.832171 GTTGTGCTCGCTCGCTCG 61.832 66.667 0.00 0.00 0.00 5.03
883 2154 3.108847 TGTTTTGTTTTCTCCCCCACT 57.891 42.857 0.00 0.00 0.00 4.00
962 2248 4.264638 GTTTGCGCTGCCGGTGTT 62.265 61.111 9.73 0.00 34.32 3.32
1014 2315 3.072468 CCATTGGTGGCAGGGCAG 61.072 66.667 0.00 0.00 39.01 4.85
1115 2753 3.002371 CCAGAAGGAGGGGAAGGC 58.998 66.667 0.00 0.00 36.89 4.35
1336 2977 4.057428 GCGTCGTGCTCCTCCAGT 62.057 66.667 0.00 0.00 41.73 4.00
1493 3134 4.643733 CTCGTCGATGATGAGGCC 57.356 61.111 7.99 0.00 40.76 5.19
1575 3222 3.358667 ATGTCGTCGTCGTCGTCGG 62.359 63.158 18.80 3.31 45.17 4.79
1576 3223 2.095282 ATGTCGTCGTCGTCGTCG 59.905 61.111 14.18 14.18 46.06 5.12
1577 3224 2.486322 GCATGTCGTCGTCGTCGTC 61.486 63.158 11.41 6.94 38.33 4.20
1578 3225 2.501222 GCATGTCGTCGTCGTCGT 60.501 61.111 11.41 0.00 38.33 4.34
1870 3523 0.895530 TGGCCTTCCACTTCTCGTAG 59.104 55.000 3.32 0.00 37.47 3.51
1957 3625 2.301577 AGCGAATTACTGGTCTCTGC 57.698 50.000 0.00 0.00 0.00 4.26
1958 3626 3.849911 TGAAGCGAATTACTGGTCTCTG 58.150 45.455 0.00 0.00 0.00 3.35
1964 3632 5.180117 CCTAATCCATGAAGCGAATTACTGG 59.820 44.000 0.00 0.00 0.00 4.00
1973 3641 2.620115 ACAATGCCTAATCCATGAAGCG 59.380 45.455 0.00 0.00 0.00 4.68
2004 3672 1.667724 ACACTCAGCTATCGCAAATGC 59.332 47.619 0.00 0.00 39.10 3.56
2013 3681 3.407424 TTCTGCAACACACTCAGCTAT 57.593 42.857 0.00 0.00 0.00 2.97
2019 3687 6.531240 TCAAAAAGAATTTCTGCAACACACTC 59.469 34.615 0.00 0.00 37.28 3.51
2020 3688 6.397272 TCAAAAAGAATTTCTGCAACACACT 58.603 32.000 0.00 0.00 37.28 3.55
2060 3728 4.141892 GCCAATTCACATCCATTTCATCCA 60.142 41.667 0.00 0.00 0.00 3.41
2070 3738 0.894835 AAACCCGCCAATTCACATCC 59.105 50.000 0.00 0.00 0.00 3.51
2092 3766 9.476202 CGTAGTATCATTCTGTATGAAATGGAA 57.524 33.333 1.00 0.00 45.99 3.53
2093 3767 8.856103 TCGTAGTATCATTCTGTATGAAATGGA 58.144 33.333 1.00 0.00 45.99 3.41
2094 3768 9.476202 TTCGTAGTATCATTCTGTATGAAATGG 57.524 33.333 1.00 0.00 45.99 3.16
2115 3789 7.278203 TCGTATTGAAAATGCACCTTATTCGTA 59.722 33.333 0.00 0.00 0.00 3.43
2116 3790 6.092944 TCGTATTGAAAATGCACCTTATTCGT 59.907 34.615 0.00 0.00 0.00 3.85
2117 3791 6.482835 TCGTATTGAAAATGCACCTTATTCG 58.517 36.000 0.00 0.00 0.00 3.34
2146 3820 3.079960 AGATTGCATCTACGTACACCG 57.920 47.619 0.00 0.00 38.00 4.94
2153 3827 7.482654 TTGGAAAAGATAGATTGCATCTACG 57.517 36.000 7.69 0.00 44.07 3.51
2166 3840 7.396907 TCTCTTTGCATTCCATTGGAAAAGATA 59.603 33.333 21.52 14.47 45.41 1.98
2208 3900 2.752238 AGAGTGGAGGCCTCGTCG 60.752 66.667 26.36 0.00 34.08 5.12
2215 3907 2.125753 CAGCGACAGAGTGGAGGC 60.126 66.667 0.00 0.00 0.00 4.70
2245 3937 7.067494 AGCCAAATCTTCATGTAGAATTACACC 59.933 37.037 6.10 0.00 42.29 4.16
2246 3938 7.989826 AGCCAAATCTTCATGTAGAATTACAC 58.010 34.615 6.10 0.00 42.29 2.90
2247 3939 8.461222 CAAGCCAAATCTTCATGTAGAATTACA 58.539 33.333 6.10 0.00 43.55 2.41
2248 3940 8.462016 ACAAGCCAAATCTTCATGTAGAATTAC 58.538 33.333 6.10 1.13 35.25 1.89
2249 3941 8.579850 ACAAGCCAAATCTTCATGTAGAATTA 57.420 30.769 6.10 0.00 35.25 1.40
2250 3942 7.472334 ACAAGCCAAATCTTCATGTAGAATT 57.528 32.000 6.10 1.45 35.25 2.17
2251 3943 7.395489 AGAACAAGCCAAATCTTCATGTAGAAT 59.605 33.333 6.10 0.00 35.25 2.40
2252 3944 6.716628 AGAACAAGCCAAATCTTCATGTAGAA 59.283 34.615 6.10 0.00 34.41 2.10
2253 3945 6.240894 AGAACAAGCCAAATCTTCATGTAGA 58.759 36.000 4.36 4.36 0.00 2.59
2255 3947 5.415701 GGAGAACAAGCCAAATCTTCATGTA 59.584 40.000 0.00 0.00 0.00 2.29
2256 3948 4.219288 GGAGAACAAGCCAAATCTTCATGT 59.781 41.667 0.00 0.00 0.00 3.21
2257 3949 4.219070 TGGAGAACAAGCCAAATCTTCATG 59.781 41.667 0.00 0.00 0.00 3.07
2258 3950 4.410099 TGGAGAACAAGCCAAATCTTCAT 58.590 39.130 0.00 0.00 0.00 2.57
2259 3951 3.822735 CTGGAGAACAAGCCAAATCTTCA 59.177 43.478 0.00 0.00 32.95 3.02
2260 3952 4.074970 TCTGGAGAACAAGCCAAATCTTC 58.925 43.478 0.00 0.00 32.95 2.87
2262 3954 3.328931 TCTCTGGAGAACAAGCCAAATCT 59.671 43.478 0.00 0.00 33.91 2.40
2263 3955 3.679389 TCTCTGGAGAACAAGCCAAATC 58.321 45.455 0.00 0.00 33.91 2.17
2264 3956 3.795688 TCTCTGGAGAACAAGCCAAAT 57.204 42.857 0.00 0.00 33.91 2.32
2265 3957 3.415212 CATCTCTGGAGAACAAGCCAAA 58.585 45.455 4.34 0.00 41.36 3.28
2266 3958 2.877300 GCATCTCTGGAGAACAAGCCAA 60.877 50.000 4.34 0.00 41.36 4.52
2267 3959 1.339438 GCATCTCTGGAGAACAAGCCA 60.339 52.381 4.34 0.00 41.36 4.75
2268 3960 1.065564 AGCATCTCTGGAGAACAAGCC 60.066 52.381 4.34 0.00 41.36 4.35
2269 3961 2.008329 CAGCATCTCTGGAGAACAAGC 58.992 52.381 4.34 6.92 41.36 4.01
2286 3978 3.641437 TGAATTTGTGTTGCCTACAGC 57.359 42.857 0.00 0.00 37.45 4.40
2287 3979 6.146021 GGAATTTGAATTTGTGTTGCCTACAG 59.854 38.462 0.00 0.00 37.45 2.74
2288 3980 5.988561 GGAATTTGAATTTGTGTTGCCTACA 59.011 36.000 0.00 0.00 0.00 2.74
2289 3981 6.223120 AGGAATTTGAATTTGTGTTGCCTAC 58.777 36.000 0.00 0.00 0.00 3.18
2290 3982 6.418057 AGGAATTTGAATTTGTGTTGCCTA 57.582 33.333 0.00 0.00 0.00 3.93
2291 3983 5.294734 AGGAATTTGAATTTGTGTTGCCT 57.705 34.783 0.00 0.00 0.00 4.75
2292 3984 5.296531 ACAAGGAATTTGAATTTGTGTTGCC 59.703 36.000 0.00 0.00 39.21 4.52
2293 3985 6.036953 TCACAAGGAATTTGAATTTGTGTTGC 59.963 34.615 13.36 0.00 39.21 4.17
2296 3988 8.735692 AAATCACAAGGAATTTGAATTTGTGT 57.264 26.923 13.36 7.00 39.21 3.72
2297 3989 9.048446 AGAAATCACAAGGAATTTGAATTTGTG 57.952 29.630 8.84 8.84 39.21 3.33
2298 3990 9.048446 CAGAAATCACAAGGAATTTGAATTTGT 57.952 29.630 8.55 0.00 39.21 2.83
2301 3993 6.366877 CGCAGAAATCACAAGGAATTTGAATT 59.633 34.615 0.00 0.00 39.21 2.17
2302 3994 5.865552 CGCAGAAATCACAAGGAATTTGAAT 59.134 36.000 0.00 0.00 39.21 2.57
2305 3997 3.365820 GCGCAGAAATCACAAGGAATTTG 59.634 43.478 0.30 0.00 42.68 2.32
2306 3998 3.256631 AGCGCAGAAATCACAAGGAATTT 59.743 39.130 11.47 0.00 0.00 1.82
2309 4001 1.806542 GAGCGCAGAAATCACAAGGAA 59.193 47.619 11.47 0.00 0.00 3.36
2310 4002 1.270785 TGAGCGCAGAAATCACAAGGA 60.271 47.619 11.47 0.00 0.00 3.36
2311 4003 1.129998 CTGAGCGCAGAAATCACAAGG 59.870 52.381 12.68 0.00 45.17 3.61
2312 4004 1.129998 CCTGAGCGCAGAAATCACAAG 59.870 52.381 19.95 0.00 45.17 3.16
2313 4005 1.159285 CCTGAGCGCAGAAATCACAA 58.841 50.000 19.95 0.00 45.17 3.33
2314 4006 0.321346 TCCTGAGCGCAGAAATCACA 59.679 50.000 19.95 0.00 45.17 3.58
2315 4007 0.723981 GTCCTGAGCGCAGAAATCAC 59.276 55.000 19.95 3.66 45.17 3.06
2316 4008 0.737367 CGTCCTGAGCGCAGAAATCA 60.737 55.000 19.95 2.58 45.17 2.57
2317 4009 0.458543 TCGTCCTGAGCGCAGAAATC 60.459 55.000 19.95 0.00 45.17 2.17
2320 4012 2.201436 GAGTCGTCCTGAGCGCAGAA 62.201 60.000 19.95 0.00 45.17 3.02
2321 4013 2.673341 AGTCGTCCTGAGCGCAGA 60.673 61.111 19.95 2.19 45.17 4.26
2322 4014 2.202544 GAGTCGTCCTGAGCGCAG 60.203 66.667 11.47 10.92 41.93 5.18
2323 4015 2.268802 AAGAGTCGTCCTGAGCGCA 61.269 57.895 11.47 0.00 0.00 6.09
2324 4016 1.803519 CAAGAGTCGTCCTGAGCGC 60.804 63.158 0.00 0.00 0.00 5.92
2326 4018 0.735632 CTGCAAGAGTCGTCCTGAGC 60.736 60.000 0.00 0.00 34.07 4.26
2327 4019 0.735632 GCTGCAAGAGTCGTCCTGAG 60.736 60.000 0.00 0.00 34.07 3.35
2328 4020 1.290324 GCTGCAAGAGTCGTCCTGA 59.710 57.895 0.00 0.00 34.07 3.86
2329 4021 0.601046 TTGCTGCAAGAGTCGTCCTG 60.601 55.000 11.69 0.00 34.07 3.86
2330 4022 0.106708 TTTGCTGCAAGAGTCGTCCT 59.893 50.000 15.39 0.00 34.07 3.85
2331 4023 0.514691 CTTTGCTGCAAGAGTCGTCC 59.485 55.000 15.39 0.00 34.07 4.79
2332 4024 1.221414 ACTTTGCTGCAAGAGTCGTC 58.779 50.000 15.39 0.00 34.07 4.20
2333 4025 1.668419 AACTTTGCTGCAAGAGTCGT 58.332 45.000 21.64 11.64 34.07 4.34
2337 4367 5.045215 TCAAATGAAACTTTGCTGCAAGAG 58.955 37.500 15.39 16.50 36.32 2.85
2342 4372 5.971895 TTTCTCAAATGAAACTTTGCTGC 57.028 34.783 0.00 0.00 36.32 5.25
2353 4383 8.924691 CAAAAAGAAACACAGTTTCTCAAATGA 58.075 29.630 21.31 0.00 37.75 2.57
2367 4397 5.911838 GCTCTGTCTCATCAAAAAGAAACAC 59.088 40.000 0.00 0.00 0.00 3.32
2374 4404 3.415212 CCCTGCTCTGTCTCATCAAAAA 58.585 45.455 0.00 0.00 0.00 1.94
2375 4405 2.877300 GCCCTGCTCTGTCTCATCAAAA 60.877 50.000 0.00 0.00 0.00 2.44
2376 4406 1.339438 GCCCTGCTCTGTCTCATCAAA 60.339 52.381 0.00 0.00 0.00 2.69
2377 4407 0.251354 GCCCTGCTCTGTCTCATCAA 59.749 55.000 0.00 0.00 0.00 2.57
2381 4411 1.117994 CATAGCCCTGCTCTGTCTCA 58.882 55.000 0.00 0.00 40.44 3.27
2389 4419 1.525923 CAGAGTGCATAGCCCTGCT 59.474 57.895 9.27 0.00 42.75 4.24
2461 4491 5.163131 GGCAGTATAGATTTCCCCCAGTTTA 60.163 44.000 0.00 0.00 0.00 2.01
2465 4495 2.711009 TGGCAGTATAGATTTCCCCCAG 59.289 50.000 0.00 0.00 0.00 4.45
2472 4502 3.133003 ACACGAGCTGGCAGTATAGATTT 59.867 43.478 17.16 0.00 0.00 2.17
2475 4505 1.405463 CACACGAGCTGGCAGTATAGA 59.595 52.381 17.16 0.00 0.00 1.98
2476 4506 1.135139 ACACACGAGCTGGCAGTATAG 59.865 52.381 17.16 8.26 0.00 1.31
2480 4510 1.153168 AAACACACGAGCTGGCAGT 60.153 52.632 17.16 2.59 0.00 4.40
2482 4512 0.463654 AAGAAACACACGAGCTGGCA 60.464 50.000 0.00 0.00 0.00 4.92
2483 4513 0.040958 CAAGAAACACACGAGCTGGC 60.041 55.000 0.00 0.00 0.00 4.85
2484 4514 0.040958 GCAAGAAACACACGAGCTGG 60.041 55.000 0.00 0.00 0.00 4.85
2487 4517 1.070309 CAGAGCAAGAAACACACGAGC 60.070 52.381 0.00 0.00 0.00 5.03
2488 4518 1.070309 GCAGAGCAAGAAACACACGAG 60.070 52.381 0.00 0.00 0.00 4.18
2490 4520 0.657312 TGCAGAGCAAGAAACACACG 59.343 50.000 0.00 0.00 34.76 4.49
2491 4521 1.401552 TGTGCAGAGCAAGAAACACAC 59.598 47.619 0.00 0.00 41.47 3.82
2541 4586 2.282462 CCTGGCAGGGTCAACACC 60.282 66.667 26.34 0.00 42.90 4.16
2587 4632 4.990553 GCCGCCGGCCTATCTTCC 62.991 72.222 23.46 0.00 44.06 3.46
2730 5216 2.332654 GGTGGCCGCCTTTACACAG 61.333 63.158 28.79 0.00 35.62 3.66
2769 5255 1.804326 CAGTAGGGTTCGGCGTTCG 60.804 63.158 6.85 0.00 40.90 3.95
2950 5455 1.476488 CAAAACTCCTATTTGCCCCGG 59.524 52.381 0.00 0.00 31.70 5.73
2951 5456 2.167662 ACAAAACTCCTATTTGCCCCG 58.832 47.619 0.00 0.00 40.58 5.73
2952 5457 3.832490 AGAACAAAACTCCTATTTGCCCC 59.168 43.478 0.00 0.00 40.58 5.80
2953 5458 6.775594 ATAGAACAAAACTCCTATTTGCCC 57.224 37.500 0.00 0.00 40.58 5.36
2962 5467 9.516314 GGTTGCATTATTATAGAACAAAACTCC 57.484 33.333 0.00 0.00 0.00 3.85
2963 5468 9.221775 CGGTTGCATTATTATAGAACAAAACTC 57.778 33.333 0.00 0.00 0.00 3.01
2964 5469 7.700656 GCGGTTGCATTATTATAGAACAAAACT 59.299 33.333 0.00 0.00 42.15 2.66
2965 5470 7.700656 AGCGGTTGCATTATTATAGAACAAAAC 59.299 33.333 0.00 0.00 46.23 2.43
2966 5471 7.767261 AGCGGTTGCATTATTATAGAACAAAA 58.233 30.769 0.00 0.00 46.23 2.44
2967 5472 7.328277 AGCGGTTGCATTATTATAGAACAAA 57.672 32.000 0.00 0.00 46.23 2.83
2968 5473 6.935741 AGCGGTTGCATTATTATAGAACAA 57.064 33.333 0.00 0.00 46.23 2.83
2969 5474 6.935741 AAGCGGTTGCATTATTATAGAACA 57.064 33.333 0.00 0.00 46.23 3.18
2978 5483 8.559536 GCATGTATATATAAGCGGTTGCATTAT 58.440 33.333 10.73 4.91 46.23 1.28
2979 5484 7.550906 TGCATGTATATATAAGCGGTTGCATTA 59.449 33.333 10.73 0.00 46.23 1.90
2980 5485 6.374053 TGCATGTATATATAAGCGGTTGCATT 59.626 34.615 10.73 0.00 46.23 3.56
2981 5486 5.879777 TGCATGTATATATAAGCGGTTGCAT 59.120 36.000 10.73 5.48 46.23 3.96
2982 5487 5.241662 TGCATGTATATATAAGCGGTTGCA 58.758 37.500 10.73 4.57 46.23 4.08
2983 5488 5.794687 TGCATGTATATATAAGCGGTTGC 57.205 39.130 10.73 1.63 43.24 4.17
2984 5489 8.328146 GTGTATGCATGTATATATAAGCGGTTG 58.672 37.037 10.16 0.00 0.00 3.77
2985 5490 8.258007 AGTGTATGCATGTATATATAAGCGGTT 58.742 33.333 10.16 4.76 0.00 4.44
2986 5491 7.782049 AGTGTATGCATGTATATATAAGCGGT 58.218 34.615 10.16 0.00 0.00 5.68
2987 5492 7.920682 TGAGTGTATGCATGTATATATAAGCGG 59.079 37.037 10.16 0.00 0.00 5.52
2988 5493 8.856490 TGAGTGTATGCATGTATATATAAGCG 57.144 34.615 10.16 0.00 0.00 4.68
2998 5503 9.476202 GTTTATAGTGATGAGTGTATGCATGTA 57.524 33.333 10.16 0.00 0.00 2.29
2999 5504 7.169813 CGTTTATAGTGATGAGTGTATGCATGT 59.830 37.037 10.16 0.00 0.00 3.21
3000 5505 7.504818 CGTTTATAGTGATGAGTGTATGCATG 58.495 38.462 10.16 0.00 0.00 4.06
3001 5506 6.146184 GCGTTTATAGTGATGAGTGTATGCAT 59.854 38.462 3.79 3.79 0.00 3.96
3002 5507 5.462068 GCGTTTATAGTGATGAGTGTATGCA 59.538 40.000 0.00 0.00 0.00 3.96
3003 5508 5.462068 TGCGTTTATAGTGATGAGTGTATGC 59.538 40.000 0.00 0.00 0.00 3.14
3004 5509 6.475402 TGTGCGTTTATAGTGATGAGTGTATG 59.525 38.462 0.00 0.00 0.00 2.39
3005 5510 6.475727 GTGTGCGTTTATAGTGATGAGTGTAT 59.524 38.462 0.00 0.00 0.00 2.29
3006 5511 5.803461 GTGTGCGTTTATAGTGATGAGTGTA 59.197 40.000 0.00 0.00 0.00 2.90
3007 5512 4.625742 GTGTGCGTTTATAGTGATGAGTGT 59.374 41.667 0.00 0.00 0.00 3.55
3008 5513 4.625311 TGTGTGCGTTTATAGTGATGAGTG 59.375 41.667 0.00 0.00 0.00 3.51
3009 5514 4.625742 GTGTGTGCGTTTATAGTGATGAGT 59.374 41.667 0.00 0.00 0.00 3.41
3010 5515 4.259411 CGTGTGTGCGTTTATAGTGATGAG 60.259 45.833 0.00 0.00 0.00 2.90
3011 5516 3.610677 CGTGTGTGCGTTTATAGTGATGA 59.389 43.478 0.00 0.00 0.00 2.92
3012 5517 3.780957 GCGTGTGTGCGTTTATAGTGATG 60.781 47.826 0.00 0.00 0.00 3.07
3013 5518 2.347452 GCGTGTGTGCGTTTATAGTGAT 59.653 45.455 0.00 0.00 0.00 3.06
3014 5519 1.722464 GCGTGTGTGCGTTTATAGTGA 59.278 47.619 0.00 0.00 0.00 3.41
3015 5520 1.457683 TGCGTGTGTGCGTTTATAGTG 59.542 47.619 0.00 0.00 37.81 2.74
3016 5521 1.458064 GTGCGTGTGTGCGTTTATAGT 59.542 47.619 0.00 0.00 37.81 2.12
3017 5522 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
3018 5523 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
3019 5524 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
3020 5525 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
3021 5526 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
3022 5527 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
3023 5528 2.980213 TATGGTGTGCGTGTGTGCGT 62.980 55.000 0.00 0.00 37.81 5.24
3024 5529 1.634757 ATATGGTGTGCGTGTGTGCG 61.635 55.000 0.00 0.00 37.81 5.34
3025 5530 0.096976 GATATGGTGTGCGTGTGTGC 59.903 55.000 0.00 0.00 0.00 4.57
3026 5531 0.726827 GGATATGGTGTGCGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
3027 5532 0.613260 AGGATATGGTGTGCGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
3028 5533 2.595124 TAGGATATGGTGTGCGTGTG 57.405 50.000 0.00 0.00 0.00 3.82
3029 5534 2.737359 CGTTAGGATATGGTGTGCGTGT 60.737 50.000 0.00 0.00 0.00 4.49
3030 5535 1.858458 CGTTAGGATATGGTGTGCGTG 59.142 52.381 0.00 0.00 0.00 5.34
3031 5536 1.752498 TCGTTAGGATATGGTGTGCGT 59.248 47.619 0.00 0.00 0.00 5.24
3032 5537 2.394708 CTCGTTAGGATATGGTGTGCG 58.605 52.381 0.00 0.00 0.00 5.34
3033 5538 2.135933 GCTCGTTAGGATATGGTGTGC 58.864 52.381 0.00 0.00 0.00 4.57
3034 5539 3.452755 TGCTCGTTAGGATATGGTGTG 57.547 47.619 0.00 0.00 0.00 3.82
3035 5540 3.898123 AGATGCTCGTTAGGATATGGTGT 59.102 43.478 0.00 0.00 33.29 4.16
3036 5541 4.527509 AGATGCTCGTTAGGATATGGTG 57.472 45.455 0.00 0.00 33.29 4.17
3037 5542 4.321304 CGAAGATGCTCGTTAGGATATGGT 60.321 45.833 0.00 0.00 33.29 3.55
3038 5543 4.082733 TCGAAGATGCTCGTTAGGATATGG 60.083 45.833 0.00 0.00 39.84 2.74
3039 5544 5.048153 TCGAAGATGCTCGTTAGGATATG 57.952 43.478 0.00 0.00 39.84 1.78
3040 5545 5.906113 ATCGAAGATGCTCGTTAGGATAT 57.094 39.130 0.00 0.00 45.12 1.63
3041 5546 5.704053 TGTATCGAAGATGCTCGTTAGGATA 59.296 40.000 0.00 0.00 45.12 2.59
3042 5547 4.519350 TGTATCGAAGATGCTCGTTAGGAT 59.481 41.667 0.00 0.00 45.12 3.24
3043 5548 3.881089 TGTATCGAAGATGCTCGTTAGGA 59.119 43.478 0.00 0.00 45.12 2.94
3044 5549 3.975670 GTGTATCGAAGATGCTCGTTAGG 59.024 47.826 0.00 0.00 45.12 2.69
3045 5550 4.849883 AGTGTATCGAAGATGCTCGTTAG 58.150 43.478 0.00 0.00 45.12 2.34
3046 5551 4.895224 AGTGTATCGAAGATGCTCGTTA 57.105 40.909 0.00 0.00 45.12 3.18
3047 5552 3.784701 AGTGTATCGAAGATGCTCGTT 57.215 42.857 0.00 0.00 45.12 3.85
3048 5553 4.790123 GCTTAGTGTATCGAAGATGCTCGT 60.790 45.833 0.00 0.00 45.12 4.18
3049 5554 3.666334 GCTTAGTGTATCGAAGATGCTCG 59.334 47.826 0.00 0.00 45.12 5.03
3050 5555 3.984633 GGCTTAGTGTATCGAAGATGCTC 59.015 47.826 0.00 0.00 45.12 4.26
3051 5556 3.551046 CGGCTTAGTGTATCGAAGATGCT 60.551 47.826 0.00 0.00 45.12 3.79
3052 5557 2.726760 CGGCTTAGTGTATCGAAGATGC 59.273 50.000 0.00 0.00 45.12 3.91
3053 5558 3.309388 CCGGCTTAGTGTATCGAAGATG 58.691 50.000 0.00 0.00 45.12 2.90
3054 5559 2.288273 GCCGGCTTAGTGTATCGAAGAT 60.288 50.000 22.15 0.00 45.12 2.40
3055 5560 1.066605 GCCGGCTTAGTGTATCGAAGA 59.933 52.381 22.15 0.00 45.75 2.87
3056 5561 1.202371 TGCCGGCTTAGTGTATCGAAG 60.202 52.381 29.70 0.00 33.06 3.79
3057 5562 0.818938 TGCCGGCTTAGTGTATCGAA 59.181 50.000 29.70 0.00 0.00 3.71
3058 5563 1.037493 ATGCCGGCTTAGTGTATCGA 58.963 50.000 29.70 1.81 0.00 3.59
3059 5564 2.717580 TATGCCGGCTTAGTGTATCG 57.282 50.000 29.70 0.00 0.00 2.92
3060 5565 4.188247 TGATATGCCGGCTTAGTGTATC 57.812 45.455 29.70 19.55 0.00 2.24
3061 5566 4.383118 GGATGATATGCCGGCTTAGTGTAT 60.383 45.833 29.70 16.81 0.00 2.29
3062 5567 3.056107 GGATGATATGCCGGCTTAGTGTA 60.056 47.826 29.70 13.03 0.00 2.90
3063 5568 2.289694 GGATGATATGCCGGCTTAGTGT 60.290 50.000 29.70 14.49 0.00 3.55
3064 5569 2.027745 AGGATGATATGCCGGCTTAGTG 60.028 50.000 29.70 0.00 0.00 2.74
3065 5570 2.027745 CAGGATGATATGCCGGCTTAGT 60.028 50.000 29.70 15.20 39.69 2.24
3066 5571 2.234661 TCAGGATGATATGCCGGCTTAG 59.765 50.000 29.70 11.66 42.56 2.18
3067 5572 2.256306 TCAGGATGATATGCCGGCTTA 58.744 47.619 29.70 25.95 42.56 3.09
3068 5573 1.059098 TCAGGATGATATGCCGGCTT 58.941 50.000 29.70 24.47 42.56 4.35
3069 5574 2.764007 TCAGGATGATATGCCGGCT 58.236 52.632 29.70 15.76 42.56 5.52
3080 5585 5.814705 GGTGACTTTGTAAGATCTCAGGATG 59.185 44.000 0.00 0.00 37.54 3.51
3081 5586 5.394663 CGGTGACTTTGTAAGATCTCAGGAT 60.395 44.000 0.00 0.00 34.45 3.24
3082 5587 4.082190 CGGTGACTTTGTAAGATCTCAGGA 60.082 45.833 0.00 0.00 0.00 3.86
3083 5588 4.177026 CGGTGACTTTGTAAGATCTCAGG 58.823 47.826 0.00 0.00 0.00 3.86
3084 5589 4.810790 ACGGTGACTTTGTAAGATCTCAG 58.189 43.478 0.00 0.00 0.00 3.35
3085 5590 4.866508 ACGGTGACTTTGTAAGATCTCA 57.133 40.909 0.00 0.00 0.00 3.27
3086 5591 5.341617 CCTACGGTGACTTTGTAAGATCTC 58.658 45.833 0.00 0.00 0.00 2.75
3087 5592 4.381718 GCCTACGGTGACTTTGTAAGATCT 60.382 45.833 0.00 0.00 0.00 2.75
3088 5593 3.864003 GCCTACGGTGACTTTGTAAGATC 59.136 47.826 0.00 0.00 0.00 2.75
3089 5594 3.514309 AGCCTACGGTGACTTTGTAAGAT 59.486 43.478 0.00 0.00 0.00 2.40
3090 5595 2.895404 AGCCTACGGTGACTTTGTAAGA 59.105 45.455 0.00 0.00 0.00 2.10
3091 5596 3.251571 GAGCCTACGGTGACTTTGTAAG 58.748 50.000 0.00 0.00 0.00 2.34
3092 5597 2.028748 GGAGCCTACGGTGACTTTGTAA 60.029 50.000 0.00 0.00 0.00 2.41
3093 5598 1.547372 GGAGCCTACGGTGACTTTGTA 59.453 52.381 0.00 0.00 0.00 2.41
3094 5599 0.320697 GGAGCCTACGGTGACTTTGT 59.679 55.000 0.00 0.00 0.00 2.83
3095 5600 0.608640 AGGAGCCTACGGTGACTTTG 59.391 55.000 0.00 0.00 0.00 2.77
3096 5601 0.896226 GAGGAGCCTACGGTGACTTT 59.104 55.000 0.00 0.00 0.00 2.66
3097 5602 1.313812 CGAGGAGCCTACGGTGACTT 61.314 60.000 0.00 0.00 0.00 3.01
3098 5603 1.749638 CGAGGAGCCTACGGTGACT 60.750 63.158 0.00 0.00 0.00 3.41
3099 5604 0.745845 TACGAGGAGCCTACGGTGAC 60.746 60.000 11.21 0.00 0.00 3.67
3100 5605 0.463295 CTACGAGGAGCCTACGGTGA 60.463 60.000 11.21 0.00 0.00 4.02
3101 5606 0.747283 ACTACGAGGAGCCTACGGTG 60.747 60.000 11.21 7.06 0.00 4.94
3102 5607 0.463474 GACTACGAGGAGCCTACGGT 60.463 60.000 11.21 3.89 0.00 4.83
3103 5608 1.497223 CGACTACGAGGAGCCTACGG 61.497 65.000 11.21 0.00 42.66 4.02
3104 5609 0.529337 TCGACTACGAGGAGCCTACG 60.529 60.000 0.00 0.00 43.81 3.51
3105 5610 3.376218 TCGACTACGAGGAGCCTAC 57.624 57.895 0.00 0.00 43.81 3.18
3116 5621 2.937799 AGGAGACATTCTCGTCGACTAC 59.062 50.000 14.70 0.00 44.28 2.73
3117 5622 3.196463 GAGGAGACATTCTCGTCGACTA 58.804 50.000 14.70 0.95 44.90 2.59
3118 5623 2.011222 GAGGAGACATTCTCGTCGACT 58.989 52.381 14.70 0.00 44.90 4.18
3119 5624 2.461897 GAGGAGACATTCTCGTCGAC 57.538 55.000 5.18 5.18 44.90 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.