Multiple sequence alignment - TraesCS6A01G270200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G270200 chr6A 100.000 2480 0 0 1 2480 496476798 496474319 0.000000e+00 4580.0
1 TraesCS6A01G270200 chr6D 92.187 1843 83 33 153 1961 346952747 346954562 0.000000e+00 2549.0
2 TraesCS6A01G270200 chr6D 93.418 471 22 6 2017 2480 346954561 346955029 0.000000e+00 689.0
3 TraesCS6A01G270200 chr6B 90.476 1680 84 37 223 1860 534097215 534095570 0.000000e+00 2146.0
4 TraesCS6A01G270200 chr6B 92.688 465 17 4 2017 2480 534095043 534094595 0.000000e+00 654.0
5 TraesCS6A01G270200 chr6B 89.262 149 16 0 1 149 46832189 46832337 1.170000e-43 187.0
6 TraesCS6A01G270200 chr6B 95.556 90 1 2 1876 1963 534095128 534095040 9.250000e-30 141.0
7 TraesCS6A01G270200 chr6B 96.226 53 2 0 1954 2006 400075930 400075878 1.220000e-13 87.9
8 TraesCS6A01G270200 chr4B 92.105 152 12 0 1 152 473109000 473109151 5.370000e-52 215.0
9 TraesCS6A01G270200 chr4B 98.039 51 0 1 1961 2010 95218871 95218821 1.220000e-13 87.9
10 TraesCS6A01G270200 chr3D 89.542 153 15 1 1 152 366009721 366009873 2.520000e-45 193.0
11 TraesCS6A01G270200 chr2B 88.889 153 17 0 1 153 72597240 72597392 3.260000e-44 189.0
12 TraesCS6A01G270200 chr2B 86.875 160 19 1 1 158 640768227 640768386 7.050000e-41 178.0
13 TraesCS6A01G270200 chr2B 94.118 85 5 0 1 85 165120519 165120435 2.000000e-26 130.0
14 TraesCS6A01G270200 chr2A 88.889 153 16 1 1 152 478389628 478389780 1.170000e-43 187.0
15 TraesCS6A01G270200 chr2A 85.526 76 8 3 1930 2002 650624449 650624374 2.640000e-10 76.8
16 TraesCS6A01G270200 chr4A 86.184 152 21 0 1 152 232376399 232376248 5.490000e-37 165.0
17 TraesCS6A01G270200 chr2D 98.077 52 1 0 1955 2006 296852045 296852096 9.450000e-15 91.6
18 TraesCS6A01G270200 chr1B 96.226 53 2 0 1954 2006 527834233 527834285 1.220000e-13 87.9
19 TraesCS6A01G270200 chr3B 90.909 66 2 4 1942 2006 246157436 246157498 4.390000e-13 86.1
20 TraesCS6A01G270200 chr4D 94.444 54 3 0 1953 2006 76446904 76446851 1.580000e-12 84.2
21 TraesCS6A01G270200 chr1A 93.103 58 2 2 1949 2006 124484494 124484439 1.580000e-12 84.2
22 TraesCS6A01G270200 chr5B 91.667 60 4 1 1947 2006 554645103 554645045 5.680000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G270200 chr6A 496474319 496476798 2479 True 4580.000000 4580 100.000000 1 2480 1 chr6A.!!$R1 2479
1 TraesCS6A01G270200 chr6D 346952747 346955029 2282 False 1619.000000 2549 92.802500 153 2480 2 chr6D.!!$F1 2327
2 TraesCS6A01G270200 chr6B 534094595 534097215 2620 True 980.333333 2146 92.906667 223 2480 3 chr6B.!!$R2 2257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.035439 GATGCGGGAGGTGGAAGAAA 60.035 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2497 0.323957 GCCCGTATTGATCTACCCCC 59.676 60.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.420890 GAGCAGAGATGCGGGAGG 59.579 66.667 0.00 0.00 40.27 4.30
18 19 2.364842 AGCAGAGATGCGGGAGGT 60.365 61.111 0.00 0.00 40.27 3.85
19 20 2.202987 GCAGAGATGCGGGAGGTG 60.203 66.667 0.00 0.00 0.00 4.00
20 21 2.503061 CAGAGATGCGGGAGGTGG 59.497 66.667 0.00 0.00 0.00 4.61
21 22 2.060383 CAGAGATGCGGGAGGTGGA 61.060 63.158 0.00 0.00 0.00 4.02
22 23 1.306141 AGAGATGCGGGAGGTGGAA 60.306 57.895 0.00 0.00 0.00 3.53
23 24 1.144936 GAGATGCGGGAGGTGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
24 25 1.306141 AGATGCGGGAGGTGGAAGA 60.306 57.895 0.00 0.00 0.00 2.87
25 26 0.909610 AGATGCGGGAGGTGGAAGAA 60.910 55.000 0.00 0.00 0.00 2.52
26 27 0.035439 GATGCGGGAGGTGGAAGAAA 60.035 55.000 0.00 0.00 0.00 2.52
27 28 0.625849 ATGCGGGAGGTGGAAGAAAT 59.374 50.000 0.00 0.00 0.00 2.17
28 29 1.281419 TGCGGGAGGTGGAAGAAATA 58.719 50.000 0.00 0.00 0.00 1.40
29 30 1.209504 TGCGGGAGGTGGAAGAAATAG 59.790 52.381 0.00 0.00 0.00 1.73
30 31 1.475213 GCGGGAGGTGGAAGAAATAGG 60.475 57.143 0.00 0.00 0.00 2.57
31 32 2.116238 CGGGAGGTGGAAGAAATAGGA 58.884 52.381 0.00 0.00 0.00 2.94
32 33 2.103263 CGGGAGGTGGAAGAAATAGGAG 59.897 54.545 0.00 0.00 0.00 3.69
33 34 3.385115 GGGAGGTGGAAGAAATAGGAGA 58.615 50.000 0.00 0.00 0.00 3.71
34 35 3.389656 GGGAGGTGGAAGAAATAGGAGAG 59.610 52.174 0.00 0.00 0.00 3.20
35 36 4.290942 GGAGGTGGAAGAAATAGGAGAGA 58.709 47.826 0.00 0.00 0.00 3.10
36 37 4.343814 GGAGGTGGAAGAAATAGGAGAGAG 59.656 50.000 0.00 0.00 0.00 3.20
37 38 4.294347 AGGTGGAAGAAATAGGAGAGAGG 58.706 47.826 0.00 0.00 0.00 3.69
38 39 3.181459 GGTGGAAGAAATAGGAGAGAGGC 60.181 52.174 0.00 0.00 0.00 4.70
39 40 3.452627 GTGGAAGAAATAGGAGAGAGGCA 59.547 47.826 0.00 0.00 0.00 4.75
40 41 3.708631 TGGAAGAAATAGGAGAGAGGCAG 59.291 47.826 0.00 0.00 0.00 4.85
41 42 3.494223 GGAAGAAATAGGAGAGAGGCAGC 60.494 52.174 0.00 0.00 0.00 5.25
42 43 1.686052 AGAAATAGGAGAGAGGCAGCG 59.314 52.381 0.00 0.00 0.00 5.18
43 44 1.410882 GAAATAGGAGAGAGGCAGCGT 59.589 52.381 0.00 0.00 0.00 5.07
44 45 2.366640 AATAGGAGAGAGGCAGCGTA 57.633 50.000 0.00 0.00 0.00 4.42
45 46 1.904287 ATAGGAGAGAGGCAGCGTAG 58.096 55.000 0.00 0.00 0.00 3.51
46 47 0.837940 TAGGAGAGAGGCAGCGTAGA 59.162 55.000 0.00 0.00 0.00 2.59
47 48 0.184933 AGGAGAGAGGCAGCGTAGAT 59.815 55.000 0.00 0.00 0.00 1.98
55 56 2.423446 CAGCGTAGATGGGGGCTC 59.577 66.667 0.00 0.00 42.04 4.70
56 57 3.227276 AGCGTAGATGGGGGCTCG 61.227 66.667 0.00 0.00 0.00 5.03
57 58 4.971125 GCGTAGATGGGGGCTCGC 62.971 72.222 0.00 0.00 37.17 5.03
58 59 3.536917 CGTAGATGGGGGCTCGCA 61.537 66.667 5.51 5.51 40.16 5.10
63 64 2.122413 ATGGGGGCTCGCATCCTA 60.122 61.111 10.93 0.00 41.89 2.94
64 65 2.520536 ATGGGGGCTCGCATCCTAC 61.521 63.158 10.93 0.00 41.89 3.18
65 66 3.161450 GGGGGCTCGCATCCTACA 61.161 66.667 0.00 0.00 0.00 2.74
66 67 2.520536 GGGGGCTCGCATCCTACAT 61.521 63.158 0.00 0.00 0.00 2.29
67 68 1.302033 GGGGCTCGCATCCTACATG 60.302 63.158 0.00 0.00 0.00 3.21
68 69 1.447643 GGGCTCGCATCCTACATGT 59.552 57.895 2.69 2.69 0.00 3.21
69 70 0.601311 GGGCTCGCATCCTACATGTC 60.601 60.000 0.00 0.00 0.00 3.06
70 71 0.941463 GGCTCGCATCCTACATGTCG 60.941 60.000 0.00 0.00 0.00 4.35
71 72 1.552348 GCTCGCATCCTACATGTCGC 61.552 60.000 0.00 0.00 0.00 5.19
72 73 0.249031 CTCGCATCCTACATGTCGCA 60.249 55.000 0.00 0.00 0.00 5.10
73 74 0.174617 TCGCATCCTACATGTCGCAA 59.825 50.000 0.00 0.00 0.00 4.85
74 75 0.578683 CGCATCCTACATGTCGCAAG 59.421 55.000 0.00 0.00 0.00 4.01
75 76 1.656652 GCATCCTACATGTCGCAAGT 58.343 50.000 0.00 0.00 39.48 3.16
76 77 2.009774 GCATCCTACATGTCGCAAGTT 58.990 47.619 0.00 0.00 39.48 2.66
77 78 2.223112 GCATCCTACATGTCGCAAGTTG 60.223 50.000 0.00 0.00 39.48 3.16
78 79 1.438651 TCCTACATGTCGCAAGTTGC 58.561 50.000 18.18 18.18 40.69 4.17
79 80 1.001974 TCCTACATGTCGCAAGTTGCT 59.998 47.619 24.61 8.19 42.25 3.91
80 81 1.806542 CCTACATGTCGCAAGTTGCTT 59.193 47.619 24.61 5.10 42.25 3.91
81 82 2.159653 CCTACATGTCGCAAGTTGCTTC 60.160 50.000 24.61 16.93 42.25 3.86
82 83 0.235665 ACATGTCGCAAGTTGCTTCG 59.764 50.000 24.61 10.33 42.25 3.79
83 84 1.061799 CATGTCGCAAGTTGCTTCGC 61.062 55.000 24.61 12.31 42.25 4.70
84 85 1.230635 ATGTCGCAAGTTGCTTCGCT 61.231 50.000 24.61 3.89 42.25 4.93
85 86 0.598942 TGTCGCAAGTTGCTTCGCTA 60.599 50.000 24.61 3.52 42.25 4.26
86 87 0.093705 GTCGCAAGTTGCTTCGCTAG 59.906 55.000 24.61 8.18 42.25 3.42
87 88 0.038618 TCGCAAGTTGCTTCGCTAGA 60.039 50.000 24.61 10.39 42.25 2.43
88 89 0.790207 CGCAAGTTGCTTCGCTAGAA 59.210 50.000 24.61 0.00 42.25 2.10
107 108 3.842126 CGTGAGCATGTGGACGCG 61.842 66.667 3.53 3.53 0.00 6.01
108 109 2.432456 GTGAGCATGTGGACGCGA 60.432 61.111 15.93 0.00 0.00 5.87
109 110 2.432456 TGAGCATGTGGACGCGAC 60.432 61.111 15.93 6.56 0.00 5.19
110 111 3.188786 GAGCATGTGGACGCGACC 61.189 66.667 20.91 20.91 0.00 4.79
122 123 4.179579 GCGACCGGCCAATGCTTC 62.180 66.667 0.00 0.00 37.74 3.86
123 124 3.864686 CGACCGGCCAATGCTTCG 61.865 66.667 0.00 0.00 37.74 3.79
124 125 3.508840 GACCGGCCAATGCTTCGG 61.509 66.667 0.00 0.00 44.73 4.30
130 131 3.814268 CCAATGCTTCGGCCGGTG 61.814 66.667 27.83 19.15 40.91 4.94
131 132 4.481112 CAATGCTTCGGCCGGTGC 62.481 66.667 27.83 27.79 40.91 5.01
144 145 3.060000 GGTGCACCGGGCCTAAAC 61.060 66.667 22.49 0.48 43.89 2.01
145 146 3.428282 GTGCACCGGGCCTAAACG 61.428 66.667 5.22 0.00 43.89 3.60
146 147 3.943691 TGCACCGGGCCTAAACGT 61.944 61.111 6.32 0.00 43.89 3.99
147 148 2.670592 GCACCGGGCCTAAACGTT 60.671 61.111 6.32 0.00 36.11 3.99
148 149 2.263021 GCACCGGGCCTAAACGTTT 61.263 57.895 18.90 18.90 36.11 3.60
149 150 1.871077 CACCGGGCCTAAACGTTTC 59.129 57.895 18.42 2.99 0.00 2.78
150 151 1.302752 ACCGGGCCTAAACGTTTCC 60.303 57.895 18.42 12.63 0.00 3.13
151 152 2.042259 CCGGGCCTAAACGTTTCCC 61.042 63.158 18.42 20.02 0.00 3.97
180 181 2.234300 ACGGCTGGTCAAATATACGG 57.766 50.000 0.00 0.00 0.00 4.02
183 184 3.575256 ACGGCTGGTCAAATATACGGATA 59.425 43.478 0.00 0.00 0.00 2.59
211 212 3.493129 TGGACAGAAAATTCGTTCTCGTG 59.507 43.478 0.00 0.00 35.63 4.35
212 213 3.493503 GGACAGAAAATTCGTTCTCGTGT 59.506 43.478 0.00 0.00 35.63 4.49
232 233 7.691158 TCGTGTGCTATATCGACGATTATTAT 58.309 34.615 16.73 5.88 34.32 1.28
259 260 4.693566 TGACGGGTTGTTTTACATGATCTC 59.306 41.667 0.00 0.00 0.00 2.75
324 326 2.860293 CGCGAATGAAACCAGCGT 59.140 55.556 0.00 0.00 44.96 5.07
352 354 4.133796 GCGTGGGCTGCAAATCCC 62.134 66.667 10.55 10.55 42.93 3.85
358 360 2.768492 GGCTGCAAATCCCAGAGCG 61.768 63.158 0.50 0.00 32.03 5.03
362 364 0.966875 TGCAAATCCCAGAGCGCATT 60.967 50.000 11.47 0.00 0.00 3.56
386 389 2.436646 CGCGGTGCCCTTGAGAAT 60.437 61.111 0.00 0.00 0.00 2.40
420 423 3.181497 CCGACGGCAGAAAATCAATCAAT 60.181 43.478 0.00 0.00 0.00 2.57
421 424 4.031028 CGACGGCAGAAAATCAATCAATC 58.969 43.478 0.00 0.00 0.00 2.67
422 425 4.437255 CGACGGCAGAAAATCAATCAATCA 60.437 41.667 0.00 0.00 0.00 2.57
423 426 5.389859 ACGGCAGAAAATCAATCAATCAA 57.610 34.783 0.00 0.00 0.00 2.57
449 460 1.097547 CCTAAGGCGACCAATGGCAG 61.098 60.000 0.00 0.00 0.00 4.85
453 464 2.103538 GCGACCAATGGCAGCATG 59.896 61.111 13.43 0.00 40.87 4.06
501 513 1.668919 CCGCGAGCAAGTCTTGTCTTA 60.669 52.381 8.23 0.00 0.00 2.10
650 664 1.583477 GAGCAGCACCTGAAAAGGC 59.417 57.895 0.00 0.00 32.44 4.35
670 695 2.892425 GAGGCATCCGTTCGCAGG 60.892 66.667 0.00 0.00 0.00 4.85
761 796 2.577378 GAGTTCGAGAGGCGTCGC 60.577 66.667 9.22 9.22 39.90 5.19
893 928 0.618458 TTTATCAACCCGCAGCCTCT 59.382 50.000 0.00 0.00 0.00 3.69
974 1009 2.813172 ACAATCACAATCACATCACGCA 59.187 40.909 0.00 0.00 0.00 5.24
1039 1074 4.452733 CTGACGAAGGGCCGGGAC 62.453 72.222 2.18 0.00 0.00 4.46
1095 1130 2.045143 ACCGAGTCCGAGGAGACC 60.045 66.667 0.00 0.00 37.49 3.85
1096 1131 3.203412 CCGAGTCCGAGGAGACCG 61.203 72.222 0.00 0.00 37.49 4.79
1097 1132 3.878519 CGAGTCCGAGGAGACCGC 61.879 72.222 0.00 0.00 37.49 5.68
1098 1133 3.519930 GAGTCCGAGGAGACCGCC 61.520 72.222 0.00 0.00 37.49 6.13
1150 1185 1.137872 CCAGGAGGAAGATGAAGGACG 59.862 57.143 0.00 0.00 36.89 4.79
1445 1495 4.803426 GGACGCGCTCCTCACCAG 62.803 72.222 5.73 0.00 35.89 4.00
1463 1513 1.534595 CAGCCTGCTCAACAAACTCTC 59.465 52.381 0.00 0.00 0.00 3.20
1517 1569 2.580470 CGACGCGTGCCTGATGATC 61.580 63.158 20.70 0.00 0.00 2.92
1519 1571 1.079197 ACGCGTGCCTGATGATCAA 60.079 52.632 12.93 0.00 0.00 2.57
1554 1607 0.386476 TGGTAGCGTAGGTTATGGCG 59.614 55.000 0.00 0.00 40.68 5.69
1661 1716 8.478066 AGTCTATAAATCTCAGTTGCATACACA 58.522 33.333 0.00 0.00 0.00 3.72
1662 1717 9.265901 GTCTATAAATCTCAGTTGCATACACAT 57.734 33.333 0.00 0.00 0.00 3.21
1663 1718 9.264719 TCTATAAATCTCAGTTGCATACACATG 57.735 33.333 0.00 0.00 35.07 3.21
1664 1719 7.870509 ATAAATCTCAGTTGCATACACATGT 57.129 32.000 0.00 0.00 34.40 3.21
1665 1720 8.962884 ATAAATCTCAGTTGCATACACATGTA 57.037 30.769 0.00 0.00 34.40 2.29
1699 1754 1.752498 CTAAGATGCTGCCAAATGCCA 59.248 47.619 0.00 0.00 40.16 4.92
1703 1758 1.622607 ATGCTGCCAAATGCCATGCT 61.623 50.000 0.00 0.00 40.16 3.79
1704 1759 1.813753 GCTGCCAAATGCCATGCTG 60.814 57.895 0.00 0.00 40.16 4.41
1705 1760 1.894512 CTGCCAAATGCCATGCTGA 59.105 52.632 0.00 0.00 40.16 4.26
1706 1761 0.179111 CTGCCAAATGCCATGCTGAG 60.179 55.000 0.00 0.00 40.16 3.35
1707 1762 0.901114 TGCCAAATGCCATGCTGAGT 60.901 50.000 0.00 0.00 40.16 3.41
1710 1765 2.613691 CCAAATGCCATGCTGAGTTTC 58.386 47.619 0.00 0.00 0.00 2.78
1756 1811 0.681887 TTGCTGCCAGACATCATGGG 60.682 55.000 0.00 0.00 38.33 4.00
1818 1873 5.389859 AGCGACAATCCATGAAAATTTCA 57.610 34.783 11.10 11.10 45.01 2.69
1963 2447 4.021104 TCATGCAGATGGCTACATAGGTAC 60.021 45.833 0.00 0.00 45.15 3.34
1964 2448 3.576861 TGCAGATGGCTACATAGGTACT 58.423 45.455 0.00 0.00 45.15 2.73
1965 2449 3.574396 TGCAGATGGCTACATAGGTACTC 59.426 47.826 0.00 0.00 45.15 2.59
1967 2451 3.511934 CAGATGGCTACATAGGTACTCCC 59.488 52.174 0.00 0.00 41.75 4.30
1969 2453 3.240310 TGGCTACATAGGTACTCCCTC 57.760 52.381 0.00 0.00 44.81 4.30
1970 2454 2.789992 TGGCTACATAGGTACTCCCTCT 59.210 50.000 0.00 0.00 44.81 3.69
1971 2455 3.158676 GGCTACATAGGTACTCCCTCTG 58.841 54.545 0.00 0.00 44.81 3.35
1973 2457 4.202545 GGCTACATAGGTACTCCCTCTGTA 60.203 50.000 6.48 6.48 45.97 2.74
1974 2458 5.383476 GCTACATAGGTACTCCCTCTGTAA 58.617 45.833 7.68 0.00 46.50 2.41
1975 2459 5.832060 GCTACATAGGTACTCCCTCTGTAAA 59.168 44.000 7.68 0.00 46.50 2.01
1976 2460 6.016108 GCTACATAGGTACTCCCTCTGTAAAG 60.016 46.154 7.68 1.94 46.50 1.85
1977 2461 6.088541 ACATAGGTACTCCCTCTGTAAAGA 57.911 41.667 0.00 0.00 45.97 2.52
1978 2462 6.500336 ACATAGGTACTCCCTCTGTAAAGAA 58.500 40.000 0.00 0.00 45.97 2.52
1979 2463 6.958192 ACATAGGTACTCCCTCTGTAAAGAAA 59.042 38.462 0.00 0.00 45.97 2.52
1980 2464 7.624077 ACATAGGTACTCCCTCTGTAAAGAAAT 59.376 37.037 0.00 0.00 45.97 2.17
1981 2465 9.144298 CATAGGTACTCCCTCTGTAAAGAAATA 57.856 37.037 0.00 0.00 44.81 1.40
1982 2466 9.900112 ATAGGTACTCCCTCTGTAAAGAAATAT 57.100 33.333 0.00 0.00 44.81 1.28
1984 2468 9.725206 AGGTACTCCCTCTGTAAAGAAATATAA 57.275 33.333 0.00 0.00 40.71 0.98
1985 2469 9.984190 GGTACTCCCTCTGTAAAGAAATATAAG 57.016 37.037 0.00 0.00 0.00 1.73
1988 2472 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
1989 2473 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
1990 2474 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
1991 2475 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
2014 2498 9.667107 TGTTTAGATCACTACTTTTTATGGAGG 57.333 33.333 0.00 0.00 0.00 4.30
2015 2499 9.110502 GTTTAGATCACTACTTTTTATGGAGGG 57.889 37.037 0.00 0.00 0.00 4.30
2016 2500 6.253946 AGATCACTACTTTTTATGGAGGGG 57.746 41.667 0.00 0.00 0.00 4.79
2017 2501 4.855298 TCACTACTTTTTATGGAGGGGG 57.145 45.455 0.00 0.00 0.00 5.40
2018 2502 4.180723 TCACTACTTTTTATGGAGGGGGT 58.819 43.478 0.00 0.00 0.00 4.95
2019 2503 5.352264 TCACTACTTTTTATGGAGGGGGTA 58.648 41.667 0.00 0.00 0.00 3.69
2054 2538 6.348213 GGGCAACATGTTGTTAGTACTTACTG 60.348 42.308 33.01 9.80 38.77 2.74
2055 2539 6.204108 GGCAACATGTTGTTAGTACTTACTGT 59.796 38.462 33.01 6.26 38.77 3.55
2056 2540 7.385752 GGCAACATGTTGTTAGTACTTACTGTA 59.614 37.037 33.01 0.46 38.77 2.74
2057 2541 8.219105 GCAACATGTTGTTAGTACTTACTGTAC 58.781 37.037 33.01 11.61 43.80 2.90
2150 2639 5.175859 GTGTTCCTTCCGATGTTCAGATTA 58.824 41.667 0.00 0.00 0.00 1.75
2190 2680 7.009631 CCTGAATATTGTCTTCAGTCTACGTTG 59.990 40.741 11.01 0.00 45.26 4.10
2193 2683 3.013276 TGTCTTCAGTCTACGTTGCAG 57.987 47.619 0.00 0.00 0.00 4.41
2417 2907 3.248363 CAGCAAGAACTTGACGTTGATGA 59.752 43.478 17.19 0.00 42.93 2.92
2421 2911 5.050363 GCAAGAACTTGACGTTGATGAAGTA 60.050 40.000 17.19 0.00 42.93 2.24
2427 2917 3.162666 TGACGTTGATGAAGTACCTCCT 58.837 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.420890 CCTCCCGCATCTCTGCTC 59.579 66.667 0.00 0.00 46.65 4.26
1 2 2.364842 ACCTCCCGCATCTCTGCT 60.365 61.111 0.00 0.00 46.65 4.24
2 3 2.202987 CACCTCCCGCATCTCTGC 60.203 66.667 0.00 0.00 45.31 4.26
3 4 1.617018 TTCCACCTCCCGCATCTCTG 61.617 60.000 0.00 0.00 0.00 3.35
4 5 1.306141 TTCCACCTCCCGCATCTCT 60.306 57.895 0.00 0.00 0.00 3.10
5 6 1.144936 CTTCCACCTCCCGCATCTC 59.855 63.158 0.00 0.00 0.00 2.75
6 7 0.909610 TTCTTCCACCTCCCGCATCT 60.910 55.000 0.00 0.00 0.00 2.90
7 8 0.035439 TTTCTTCCACCTCCCGCATC 60.035 55.000 0.00 0.00 0.00 3.91
8 9 0.625849 ATTTCTTCCACCTCCCGCAT 59.374 50.000 0.00 0.00 0.00 4.73
9 10 1.209504 CTATTTCTTCCACCTCCCGCA 59.790 52.381 0.00 0.00 0.00 5.69
10 11 1.475213 CCTATTTCTTCCACCTCCCGC 60.475 57.143 0.00 0.00 0.00 6.13
11 12 2.103263 CTCCTATTTCTTCCACCTCCCG 59.897 54.545 0.00 0.00 0.00 5.14
12 13 3.385115 TCTCCTATTTCTTCCACCTCCC 58.615 50.000 0.00 0.00 0.00 4.30
13 14 4.290942 TCTCTCCTATTTCTTCCACCTCC 58.709 47.826 0.00 0.00 0.00 4.30
14 15 4.343814 CCTCTCTCCTATTTCTTCCACCTC 59.656 50.000 0.00 0.00 0.00 3.85
15 16 4.294347 CCTCTCTCCTATTTCTTCCACCT 58.706 47.826 0.00 0.00 0.00 4.00
16 17 3.181459 GCCTCTCTCCTATTTCTTCCACC 60.181 52.174 0.00 0.00 0.00 4.61
17 18 3.452627 TGCCTCTCTCCTATTTCTTCCAC 59.547 47.826 0.00 0.00 0.00 4.02
18 19 3.708631 CTGCCTCTCTCCTATTTCTTCCA 59.291 47.826 0.00 0.00 0.00 3.53
19 20 3.494223 GCTGCCTCTCTCCTATTTCTTCC 60.494 52.174 0.00 0.00 0.00 3.46
20 21 3.727726 GCTGCCTCTCTCCTATTTCTTC 58.272 50.000 0.00 0.00 0.00 2.87
21 22 2.102252 CGCTGCCTCTCTCCTATTTCTT 59.898 50.000 0.00 0.00 0.00 2.52
22 23 1.686052 CGCTGCCTCTCTCCTATTTCT 59.314 52.381 0.00 0.00 0.00 2.52
23 24 1.410882 ACGCTGCCTCTCTCCTATTTC 59.589 52.381 0.00 0.00 0.00 2.17
24 25 1.490574 ACGCTGCCTCTCTCCTATTT 58.509 50.000 0.00 0.00 0.00 1.40
25 26 2.158593 TCTACGCTGCCTCTCTCCTATT 60.159 50.000 0.00 0.00 0.00 1.73
26 27 1.422024 TCTACGCTGCCTCTCTCCTAT 59.578 52.381 0.00 0.00 0.00 2.57
27 28 0.837940 TCTACGCTGCCTCTCTCCTA 59.162 55.000 0.00 0.00 0.00 2.94
28 29 0.184933 ATCTACGCTGCCTCTCTCCT 59.815 55.000 0.00 0.00 0.00 3.69
29 30 0.313672 CATCTACGCTGCCTCTCTCC 59.686 60.000 0.00 0.00 0.00 3.71
30 31 0.313672 CCATCTACGCTGCCTCTCTC 59.686 60.000 0.00 0.00 0.00 3.20
31 32 1.112315 CCCATCTACGCTGCCTCTCT 61.112 60.000 0.00 0.00 0.00 3.10
32 33 1.365633 CCCATCTACGCTGCCTCTC 59.634 63.158 0.00 0.00 0.00 3.20
33 34 2.136878 CCCCATCTACGCTGCCTCT 61.137 63.158 0.00 0.00 0.00 3.69
34 35 2.423446 CCCCATCTACGCTGCCTC 59.577 66.667 0.00 0.00 0.00 4.70
35 36 3.164269 CCCCCATCTACGCTGCCT 61.164 66.667 0.00 0.00 0.00 4.75
36 37 4.937431 GCCCCCATCTACGCTGCC 62.937 72.222 0.00 0.00 0.00 4.85
37 38 3.816367 GAGCCCCCATCTACGCTGC 62.816 68.421 0.00 0.00 0.00 5.25
38 39 2.423446 GAGCCCCCATCTACGCTG 59.577 66.667 0.00 0.00 0.00 5.18
39 40 3.227276 CGAGCCCCCATCTACGCT 61.227 66.667 0.00 0.00 0.00 5.07
40 41 4.971125 GCGAGCCCCCATCTACGC 62.971 72.222 0.00 0.00 39.33 4.42
41 42 2.771763 GATGCGAGCCCCCATCTACG 62.772 65.000 0.00 0.00 35.96 3.51
42 43 1.004440 GATGCGAGCCCCCATCTAC 60.004 63.158 0.00 0.00 35.96 2.59
43 44 2.217038 GGATGCGAGCCCCCATCTA 61.217 63.158 7.67 0.00 38.28 1.98
44 45 2.679619 TAGGATGCGAGCCCCCATCT 62.680 60.000 7.67 0.00 38.28 2.90
45 46 2.217038 TAGGATGCGAGCCCCCATC 61.217 63.158 0.00 0.00 37.66 3.51
46 47 2.122413 TAGGATGCGAGCCCCCAT 60.122 61.111 0.00 0.00 0.00 4.00
47 48 3.161450 GTAGGATGCGAGCCCCCA 61.161 66.667 0.00 0.00 0.00 4.96
48 49 2.520536 ATGTAGGATGCGAGCCCCC 61.521 63.158 0.00 0.00 0.00 5.40
49 50 1.302033 CATGTAGGATGCGAGCCCC 60.302 63.158 0.00 0.00 0.00 5.80
50 51 0.601311 GACATGTAGGATGCGAGCCC 60.601 60.000 0.00 0.00 0.00 5.19
51 52 0.941463 CGACATGTAGGATGCGAGCC 60.941 60.000 0.00 0.00 0.00 4.70
52 53 1.552348 GCGACATGTAGGATGCGAGC 61.552 60.000 8.11 0.00 0.00 5.03
53 54 0.249031 TGCGACATGTAGGATGCGAG 60.249 55.000 8.11 0.00 0.00 5.03
54 55 0.174617 TTGCGACATGTAGGATGCGA 59.825 50.000 8.11 0.86 0.00 5.10
55 56 0.578683 CTTGCGACATGTAGGATGCG 59.421 55.000 8.11 3.12 0.00 4.73
56 57 1.656652 ACTTGCGACATGTAGGATGC 58.343 50.000 11.91 6.45 0.00 3.91
57 58 2.223112 GCAACTTGCGACATGTAGGATG 60.223 50.000 8.11 9.59 31.71 3.51
58 59 2.009774 GCAACTTGCGACATGTAGGAT 58.990 47.619 8.11 0.00 31.71 3.24
59 60 1.438651 GCAACTTGCGACATGTAGGA 58.561 50.000 8.11 1.60 31.71 2.94
60 61 3.975992 GCAACTTGCGACATGTAGG 57.024 52.632 8.11 0.01 31.71 3.18
82 83 0.649475 CACATGCTCACGCTTCTAGC 59.351 55.000 0.00 0.00 38.02 3.42
83 84 1.134995 TCCACATGCTCACGCTTCTAG 60.135 52.381 0.00 0.00 36.97 2.43
84 85 0.894835 TCCACATGCTCACGCTTCTA 59.105 50.000 0.00 0.00 36.97 2.10
85 86 0.671781 GTCCACATGCTCACGCTTCT 60.672 55.000 0.00 0.00 36.97 2.85
86 87 1.790387 GTCCACATGCTCACGCTTC 59.210 57.895 0.00 0.00 36.97 3.86
87 88 2.029288 CGTCCACATGCTCACGCTT 61.029 57.895 0.00 0.00 36.97 4.68
88 89 2.433145 CGTCCACATGCTCACGCT 60.433 61.111 0.00 0.00 36.97 5.07
90 91 3.842126 CGCGTCCACATGCTCACG 61.842 66.667 0.00 6.56 35.32 4.35
91 92 2.432456 TCGCGTCCACATGCTCAC 60.432 61.111 5.77 0.00 31.59 3.51
92 93 2.432456 GTCGCGTCCACATGCTCA 60.432 61.111 5.77 0.00 31.59 4.26
93 94 3.188786 GGTCGCGTCCACATGCTC 61.189 66.667 17.72 0.00 31.59 4.26
105 106 4.179579 GAAGCATTGGCCGGTCGC 62.180 66.667 0.00 0.00 42.56 5.19
106 107 3.864686 CGAAGCATTGGCCGGTCG 61.865 66.667 0.00 0.00 42.56 4.79
107 108 3.508840 CCGAAGCATTGGCCGGTC 61.509 66.667 0.00 0.00 42.56 4.79
113 114 3.814268 CACCGGCCGAAGCATTGG 61.814 66.667 30.73 9.82 42.56 3.16
114 115 4.481112 GCACCGGCCGAAGCATTG 62.481 66.667 30.73 10.69 42.56 2.82
127 128 3.060000 GTTTAGGCCCGGTGCACC 61.060 66.667 26.78 26.78 43.89 5.01
128 129 3.428282 CGTTTAGGCCCGGTGCAC 61.428 66.667 8.80 8.80 43.89 4.57
129 130 2.962142 AAACGTTTAGGCCCGGTGCA 62.962 55.000 12.83 0.00 43.89 4.57
130 131 2.191354 GAAACGTTTAGGCCCGGTGC 62.191 60.000 14.65 3.09 40.16 5.01
131 132 1.579964 GGAAACGTTTAGGCCCGGTG 61.580 60.000 14.65 0.00 0.00 4.94
132 133 1.302752 GGAAACGTTTAGGCCCGGT 60.303 57.895 14.65 0.00 0.00 5.28
133 134 2.042259 GGGAAACGTTTAGGCCCGG 61.042 63.158 17.67 0.00 0.00 5.73
134 135 0.890090 TTGGGAAACGTTTAGGCCCG 60.890 55.000 23.81 0.00 41.79 6.13
135 136 1.330234 TTTGGGAAACGTTTAGGCCC 58.670 50.000 23.13 23.13 39.29 5.80
136 137 3.455990 TTTTTGGGAAACGTTTAGGCC 57.544 42.857 14.65 11.03 0.00 5.19
158 159 3.492011 CCGTATATTTGACCAGCCGTTAC 59.508 47.826 0.00 0.00 0.00 2.50
163 164 5.488341 ACATATCCGTATATTTGACCAGCC 58.512 41.667 0.00 0.00 0.00 4.85
166 167 7.015779 TCCAGAACATATCCGTATATTTGACCA 59.984 37.037 0.00 0.00 0.00 4.02
170 171 8.088365 TCTGTCCAGAACATATCCGTATATTTG 58.912 37.037 0.00 0.00 37.23 2.32
171 172 8.190326 TCTGTCCAGAACATATCCGTATATTT 57.810 34.615 0.00 0.00 37.23 1.40
180 181 7.308782 ACGAATTTTCTGTCCAGAACATATC 57.691 36.000 9.18 8.11 46.13 1.63
183 184 5.765182 AGAACGAATTTTCTGTCCAGAACAT 59.235 36.000 9.18 6.10 46.13 2.71
200 201 3.310501 TCGATATAGCACACGAGAACGAA 59.689 43.478 0.00 0.00 42.66 3.85
211 212 6.918569 AGCCATAATAATCGTCGATATAGCAC 59.081 38.462 8.43 0.00 0.00 4.40
212 213 6.918022 CAGCCATAATAATCGTCGATATAGCA 59.082 38.462 8.43 0.00 0.00 3.49
232 233 1.310904 GTAAAACAACCCGTCAGCCA 58.689 50.000 0.00 0.00 0.00 4.75
259 260 1.346068 GGGGCTAGGAGCAACTCTATG 59.654 57.143 0.21 0.00 44.75 2.23
378 380 3.125829 CGGTGGTCAATCACATTCTCAAG 59.874 47.826 0.00 0.00 39.27 3.02
379 381 3.073678 CGGTGGTCAATCACATTCTCAA 58.926 45.455 0.00 0.00 39.27 3.02
381 383 2.673368 GTCGGTGGTCAATCACATTCTC 59.327 50.000 0.00 0.00 39.27 2.87
386 389 1.005512 CCGTCGGTGGTCAATCACA 60.006 57.895 2.08 0.00 39.27 3.58
420 423 3.078837 GGTCGCCTTAGGATTTGTTTGA 58.921 45.455 0.69 0.00 0.00 2.69
421 424 2.817258 TGGTCGCCTTAGGATTTGTTTG 59.183 45.455 0.69 0.00 0.00 2.93
422 425 3.149005 TGGTCGCCTTAGGATTTGTTT 57.851 42.857 0.69 0.00 0.00 2.83
423 426 2.871096 TGGTCGCCTTAGGATTTGTT 57.129 45.000 0.69 0.00 0.00 2.83
449 460 8.019669 GGATAATGTTGACATACATTCTCATGC 58.980 37.037 18.86 11.47 43.39 4.06
453 464 7.570140 CGCAGGATAATGTTGACATACATTCTC 60.570 40.741 14.97 14.41 43.39 2.87
630 644 0.886490 CCTTTTCAGGTGCTGCTCGT 60.886 55.000 0.00 0.00 35.06 4.18
650 664 1.769098 CTGCGAACGGATGCCTCATG 61.769 60.000 0.00 0.00 0.00 3.07
744 779 2.577378 GCGACGCCTCTCGAACTC 60.577 66.667 9.14 0.00 41.67 3.01
761 796 0.449507 CGCGCTCGTGTTCTCTTTTG 60.450 55.000 5.56 0.00 0.00 2.44
893 928 3.834013 TTCACCATCGGCCGTTGCA 62.834 57.895 27.23 8.81 40.13 4.08
940 975 2.047844 ATTGTGCTCGCTCGTGCT 60.048 55.556 15.65 0.00 36.97 4.40
1041 1076 3.839432 CTCTCCTCGGCGGGGTTC 61.839 72.222 27.52 0.00 33.68 3.62
1150 1185 2.126307 TCTCGTCTTCTGCTGCGC 60.126 61.111 0.00 0.00 0.00 6.09
1445 1495 0.514691 CGAGAGTTTGTTGAGCAGGC 59.485 55.000 0.00 0.00 0.00 4.85
1463 1513 0.804544 TCCCTAAAAGTCATCGCGCG 60.805 55.000 26.76 26.76 0.00 6.86
1528 1581 2.738013 ACCTACGCTACCAGTGAAAC 57.262 50.000 0.00 0.00 0.00 2.78
1530 1583 3.131577 CCATAACCTACGCTACCAGTGAA 59.868 47.826 0.00 0.00 0.00 3.18
1532 1585 2.802057 GCCATAACCTACGCTACCAGTG 60.802 54.545 0.00 0.00 0.00 3.66
1542 1595 1.414919 TGATCCACCGCCATAACCTAC 59.585 52.381 0.00 0.00 0.00 3.18
1554 1607 7.454260 AACAAAGAATTTCTACTGATCCACC 57.546 36.000 12.87 0.00 35.03 4.61
1643 1698 7.337689 ACATTACATGTGTATGCAACTGAGATT 59.662 33.333 9.11 0.00 43.01 2.40
1661 1716 9.429359 GCATCTTAGCTAGTGATTACATTACAT 57.571 33.333 8.14 0.00 0.00 2.29
1662 1717 8.642432 AGCATCTTAGCTAGTGATTACATTACA 58.358 33.333 8.14 0.00 44.50 2.41
1663 1718 8.920665 CAGCATCTTAGCTAGTGATTACATTAC 58.079 37.037 8.14 0.00 44.54 1.89
1664 1719 7.600375 GCAGCATCTTAGCTAGTGATTACATTA 59.400 37.037 8.14 0.00 44.54 1.90
1665 1720 6.426328 GCAGCATCTTAGCTAGTGATTACATT 59.574 38.462 8.14 0.00 44.54 2.71
1699 1754 4.077822 CCTTCCAGAAAGAAACTCAGCAT 58.922 43.478 0.00 0.00 37.12 3.79
1703 1758 5.640158 TTACCCTTCCAGAAAGAAACTCA 57.360 39.130 0.00 0.00 37.12 3.41
1704 1759 6.490381 ACATTTACCCTTCCAGAAAGAAACTC 59.510 38.462 0.00 0.00 37.12 3.01
1705 1760 6.373759 ACATTTACCCTTCCAGAAAGAAACT 58.626 36.000 0.00 0.00 37.12 2.66
1706 1761 6.650427 ACATTTACCCTTCCAGAAAGAAAC 57.350 37.500 0.00 0.00 37.12 2.78
1707 1762 7.669089 AAACATTTACCCTTCCAGAAAGAAA 57.331 32.000 0.00 0.00 37.12 2.52
1739 1794 1.099879 GTCCCATGATGTCTGGCAGC 61.100 60.000 10.34 5.78 32.08 5.25
1777 1832 6.645003 TGTCGCTAATGGCAGTACATAATAAG 59.355 38.462 0.00 0.00 41.91 1.73
1902 2383 8.598041 ACTAGACTAGACAGAAAATTTGTGGAT 58.402 33.333 16.55 0.00 0.00 3.41
1963 2447 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
1964 2448 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
1965 2449 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
1988 2472 9.667107 CCTCCATAAAAAGTAGTGATCTAAACA 57.333 33.333 0.00 0.00 0.00 2.83
1989 2473 9.110502 CCCTCCATAAAAAGTAGTGATCTAAAC 57.889 37.037 0.00 0.00 0.00 2.01
1990 2474 8.272173 CCCCTCCATAAAAAGTAGTGATCTAAA 58.728 37.037 0.00 0.00 0.00 1.85
1991 2475 7.147373 CCCCCTCCATAAAAAGTAGTGATCTAA 60.147 40.741 0.00 0.00 0.00 2.10
1992 2476 6.329197 CCCCCTCCATAAAAAGTAGTGATCTA 59.671 42.308 0.00 0.00 0.00 1.98
1993 2477 5.132816 CCCCCTCCATAAAAAGTAGTGATCT 59.867 44.000 0.00 0.00 0.00 2.75
1994 2478 5.104067 ACCCCCTCCATAAAAAGTAGTGATC 60.104 44.000 0.00 0.00 0.00 2.92
1995 2479 4.794067 ACCCCCTCCATAAAAAGTAGTGAT 59.206 41.667 0.00 0.00 0.00 3.06
1996 2480 4.180723 ACCCCCTCCATAAAAAGTAGTGA 58.819 43.478 0.00 0.00 0.00 3.41
1997 2481 4.586306 ACCCCCTCCATAAAAAGTAGTG 57.414 45.455 0.00 0.00 0.00 2.74
1998 2482 5.606761 TCTACCCCCTCCATAAAAAGTAGT 58.393 41.667 0.00 0.00 0.00 2.73
1999 2483 6.329197 TGATCTACCCCCTCCATAAAAAGTAG 59.671 42.308 0.00 0.00 0.00 2.57
2000 2484 6.214278 TGATCTACCCCCTCCATAAAAAGTA 58.786 40.000 0.00 0.00 0.00 2.24
2001 2485 5.043762 TGATCTACCCCCTCCATAAAAAGT 58.956 41.667 0.00 0.00 0.00 2.66
2002 2486 5.646692 TGATCTACCCCCTCCATAAAAAG 57.353 43.478 0.00 0.00 0.00 2.27
2003 2487 6.606241 ATTGATCTACCCCCTCCATAAAAA 57.394 37.500 0.00 0.00 0.00 1.94
2004 2488 6.239772 CGTATTGATCTACCCCCTCCATAAAA 60.240 42.308 0.00 0.00 0.00 1.52
2005 2489 5.247564 CGTATTGATCTACCCCCTCCATAAA 59.752 44.000 0.00 0.00 0.00 1.40
2006 2490 4.775780 CGTATTGATCTACCCCCTCCATAA 59.224 45.833 0.00 0.00 0.00 1.90
2007 2491 4.350245 CGTATTGATCTACCCCCTCCATA 58.650 47.826 0.00 0.00 0.00 2.74
2008 2492 3.173965 CGTATTGATCTACCCCCTCCAT 58.826 50.000 0.00 0.00 0.00 3.41
2009 2493 2.605257 CGTATTGATCTACCCCCTCCA 58.395 52.381 0.00 0.00 0.00 3.86
2010 2494 1.900486 CCGTATTGATCTACCCCCTCC 59.100 57.143 0.00 0.00 0.00 4.30
2011 2495 1.900486 CCCGTATTGATCTACCCCCTC 59.100 57.143 0.00 0.00 0.00 4.30
2012 2496 2.025636 CCCGTATTGATCTACCCCCT 57.974 55.000 0.00 0.00 0.00 4.79
2013 2497 0.323957 GCCCGTATTGATCTACCCCC 59.676 60.000 0.00 0.00 0.00 5.40
2014 2498 1.053424 TGCCCGTATTGATCTACCCC 58.947 55.000 0.00 0.00 0.00 4.95
2015 2499 2.158871 TGTTGCCCGTATTGATCTACCC 60.159 50.000 0.00 0.00 0.00 3.69
2016 2500 3.188159 TGTTGCCCGTATTGATCTACC 57.812 47.619 0.00 0.00 0.00 3.18
2017 2501 4.127171 ACATGTTGCCCGTATTGATCTAC 58.873 43.478 0.00 0.00 0.00 2.59
2018 2502 4.415881 ACATGTTGCCCGTATTGATCTA 57.584 40.909 0.00 0.00 0.00 1.98
2019 2503 3.281727 ACATGTTGCCCGTATTGATCT 57.718 42.857 0.00 0.00 0.00 2.75
2054 2538 7.549615 ACTTTGTTGTTCACCTTCTTAGTAC 57.450 36.000 0.00 0.00 0.00 2.73
2055 2539 9.669887 TTTACTTTGTTGTTCACCTTCTTAGTA 57.330 29.630 0.00 0.00 0.00 1.82
2056 2540 8.570068 TTTACTTTGTTGTTCACCTTCTTAGT 57.430 30.769 0.00 0.00 0.00 2.24
2057 2541 9.503427 CTTTTACTTTGTTGTTCACCTTCTTAG 57.497 33.333 0.00 0.00 0.00 2.18
2060 2546 7.462571 ACTTTTACTTTGTTGTTCACCTTCT 57.537 32.000 0.00 0.00 0.00 2.85
2091 2577 5.711976 CCTACAGATTGATCAGGGTTTTGTT 59.288 40.000 0.00 0.00 0.00 2.83
2190 2680 0.605050 GCTCTGCCCTTATAGCCTGC 60.605 60.000 0.00 0.00 0.00 4.85
2445 2935 2.501723 TGAAGAGTGAATACCAGGGAGC 59.498 50.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.