>input_sequence_78893
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--------------------------------------------------------------------------ATGCAA
CGGCAGCTCTTCGGGTCTGACGAAGGGCCGGGACGGAACCCCGCCGAGGAGAGGAGGCTCAAGAGACCCGCGACCGAGTC
CGAGGAGACCGCCGGCGGCGACGACGACGACCTGCCCCCGGGAACCAGGAGGAAGATGAAGGACGCGCAGCAGAAGACGA
GACCGAGCGGCAGCGCCGCGGCCGGC---------------GCGGCGTCGGCGTCCTCCGTCCGCGCCGTGCTGCAGGAC
TTCCTGGAGCAGCAGCAGCGGCTGGACGCGCAGCGGCAGGAGGCGGCGGCGCGGCACGCGCAGGAGCGGCTGGCCTTGGA
GCAGCAGTGGCGGCAGGAGATGCAGAGGCTGGAGCGGGAGCGGCTGATGCTGGAGCAGGCGTGGCGGGAGCGCGAGGAGC
AGAGGAGGATGAGGGAGGAGGCCAGGGCCGAGCGGAGGGACGCGCTCCTCACCAGCCTGCTCAACAAACTCTCGCGCGAT
GACTTTTAG-----------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G270200
GAGCAGAGATGCGGGAGGTGGAAGAAATAGGAGAGAGGCAGCGTAGATGGGGGCTCGCATCCTACATGTCGCAAGTTGCT
TCGCTAGAAGCGTGAGCATGTGGACGCGACCGGCCAATGCTTCGGCCGGTGCACCGGGCCTAAACGTTTCCCAAAAAAGT
AACGGCTGGTCAAATATACGGATATGTTCTGGACAGAAAATTCGTTCTCGTGTGCTATATCGACGATTATTATGGCTGAC
GGGTTGTTTTACATGATCTCATAGAG-TTGCTCCTAGCCCCGCCGCCGTCCCGAACAGGAGATCAGCACGCGAATGAAAC
CAGCGTGCTCAAAAAAGCGTGGGCTGCAAATCCCAGAGCGCATTCCGGCGCGCGGTGCCCTTG-AGAATGTGATTGACCA
CCGACGGCAGAAAATCAATCAATCAAACAAA--------TCCTAAGGCGACCAATGGCAGCATGAGAATGTATGTC-AAC
ATTATCCTGCGACCGCGAGCAAGTCTTGTCTTATTT--TTTTCCTTCGACACGGCACGTCAGGCTGACAGCGGCGCTGCC
GGAGGCCGCGGGCACAGCGTCGCGCTCGCGCGTGCGTGCACGTCATCGCTATCCAGGGAGAAACCGGTCAAACGGACAGC
GATACGAGCAGCACCTGAAAAGGCATGA-----------GGCATCCGTTCGCAGGGCATGA----------CGTGGCGTC
GCCAGTGTGGACGGGGGCAAAGCCGTTCTCACCAGCCGGCGGGTGTGAACCGGCGAGGGAGTTCGAGAGGCGTCGCAAAA
GAGAACACGAGCGCGAAGGAGACCAACGGCTGCTGCATGCAAAAGCTGGCCCTGGCGACCCCTTCCACACCCACCAGCAC
CAACACGCGTAGCCGCGTAGGCGCACCCTTTATCAACCCGCAGCCTCTGCAACGGCCGATGGTGAACGAACGCTGCGTGC
GGCAGGCCGGCGAGAGCACGAGCGAGCACAATCACAATCACATCACGCAGTCTTCCACGGTGCGCGGCGGGAGCATGCAA
CGGCAGCTCTTCGGGTCTGACGAAGGGCCGGGACGGAACCCCGCCGAGGAGAGGAGGCTCAAGAGACCCGCGACCGAGTC
CGAGGAGACCGCCGGCGGCGACGACGACGACCTGCCCCCGGGAACCAGGAGGAAGATGAAGGACGCGCAGCAGAAGACGA
GACCGAGCGGCAGCGCCGCGGCCGGC---------------GCGGCGTCGGCGTCCTCCGTCCGCGCCGTGCTGCAGGAC
TTCCTGGAGCAGCAGCAGCGGCTGGACGCGCAGCGGCAGGAGGCGGCGGCGCGGCACGCGCAGGAGCGGCTGGCCTTGGA
GCAGCAGTGGCGGCAGGAGATGCAGAGGCTGGAGCGGGAGCGGCTGATGCTGGAGCAGGCGTGGCGGGAGCGCGAGGAGC
AGAGGAGGATGAGGGAGGAGGCCAGGGCCGAGCGGAGGGACGCGCTCCTCACCAGCCTGCTCAACAAACTCTCGCGCGAT
GACTTTTAGGGAGGGACACGTGGCTCCACGACGC--GTGCCTGATGATCAACAA-AAAATGTTTCACTGGTAGCGTAGGT
TATGGCG--GTGGATCAGTAGAAATTCTTTGTTTGCTTTGTCGTCACCTGATCATAGATTAATCCGTAGGAATGTTAAGC
CTCTTTAGTAGTCTATAAATCTCAGTTGCATACACATGTAATGTAATCACTAGCTAAGATGCTGCCAAATGCCATGCTGA
GTTTCTTTCTGGAAGGGTAAATGTTTTTTTTTTGCTGCCAGACATCATGGGACAAATATATGTTTTTACAGCTTATTATG
TACTGCCATTAGCGACAATCCATGAAAATTTCACAAAGAAATAAAAAAAAGATTTGGCAAATGAGAACAGGTGATTAAAT
GCACAACAT-----------------------------------------------------------------------
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-----------------------------------ATAACGTACTGTAAGTGGTCGACAGAAATCCACAAATTTTCTGTC
-TAG--TCTAGTGTGCAAATCTATCATGCAGATGGCTACATAGGTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGAT
CACTACTTTTTATGGAGGGGGTAGATCAATACGGGCAACATGTTGTTAGTACTTACTGTAC--TAAGAAGGTGAACAACA
AAGTAAAAGTATACGTAACAAAACCCTGATCAATCTGTAGGCTTG---TGAAGTTGTGTTCCTTCCGATGTTCAGATTAT
AATGAACTACTTCCTGAATA-TTGTCTTCAGTCTACGTTGCAGGCTATAAGGGCAGAGCCCCGGTTCACTTTTCCACTGT
GAAAAAAAAAATCAAAAAAATTGATGTCAGTTCACAGCGGTCACAGGCCATCGCCATAAAGGGTGAGCAAGTTTGGCAGA
AAATAACCTTTACAAGCGAAAACCGCCACTTGGAGACTTTTCAAGCTCTACCACCAAACCACTAAAATATAGCACATCTG
TTCGCAGCAAGAACTTGACGTTGATGAAGTACCTCCTGTCACCAGACATCTCCTGCTCCCTGGTATTCACTCTTCACTTC
CATACTTAT
>chr6D_153
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------------------------------------------------------------------------AAAAAATT
AACAGCCGGTTGAATATACGTATCTGTTCTGGACAGAAAAATCGTTCTCGTCCGCTATATCGACGATTATTACGGCTGAC
GGGTTGTTTTACATGATCTGATAGAG-TTGCTCCTAGCCCCGCCGCCGTCCCGAACAGGAGATCAGCACGCGAATGAAAC
CAGCGGACTCAAAAAAGCGTGGGCTGCAAACCCTAGAGCACATGCCGGCGCGCGGTGCCGATACAGAACGTGATTGACCA
CCGACGGCAGAAAATCAATCAA----ACAAA--------TCCTAAGGTGACAAATGGCAACACCAGAATGTATGTC-AAC
ACTGTCCTGCGACCGCGGGCAAGTCTTGTCTTTTTTTCTTTTCCTTCGGCACGGCACGTCAGGCTGACAGCGGCGCTGCC
GGACGCCGCGGGCACAGGGTCGCGCTCGCGCGTGCGTGGACTTCATCGCTATCCAGGGAGAAACCGGTCAAACGGACAGC
GATGCGAGCAGCACCTGAAAACGTAT-A-----------GGCATCCGTTCGCAGAGCATGACGTGGCGAGGCGTGGCGTC
GCCAGTGTGGACGGGGGCAAAGCCGTTCTCACCAGCCGGCGGGTGTGAACCGGCGAGG-AGTTCGAGAGGCGTCGGAAAA
GAGAACACGAGCGCGAAGGAGACCAACGGCTGCTGCATGCAAAAGCTGGCCCTGGCGACCCCTTCCACACCCACCAGCAC
CAACACGCGTAGCCGCGTAGGCGCACCCTTTATCAACCCGCAGCTCGGC--ACGGCCGATGGTGAACGAACGCTGCGTGC
GGCAGGCCGGCGAGCGCACGAGCGAGCACAATCACAATCACATCACGTCGTCTTCCACGGTGCGCGGCGGGAGCATGCAA
CGGCAGCGCTTCGGGTCTGACGAAGGGCCGGGAAGAAACCCCGCCGAGGAGAGGAGGCTCAAGAGACCCGCGACCGAGTC
CGAGGAGAC------CGGCGACGACGACGAACTGCCCCCGGGAACCAGGAGGAAGATGAAGGACACGCAGCAGAAGACGA
GGCCGAGCGGCAGCACCGCCGCCGGCGCAGGCGCAGGCACGGCGTCGTCGGCGTCCTCCGTCCGCGCCGTGCTGCAGGAC
TTCCTGGAGCAGCAGCAGCGCCTGGACGCGCAGCGGCAGGAGGCGGCGGCGCGGCACGCGCAGGAGCGGCTGGCCTTGGA
GCAGCAGTGGCGGCAGGAGATGCAGAGGCTGGAGCGGGAGCGGCTGATGCTGGAGCAGGCGTGGCGGGAGCGCGAGGAGC
AGAGGAGGATGAGGGAGGAGGCCAGGGCCGAGAGGAGGGACGCGCTCCTCACCAACCTGCTCAACAAACTCTTGCGCGAT
GACTTTTAGGGAGGGACACGTGGCTCCACGACGTGTGTGCCTAATAATAATCAACAAAATTTGTTACTTGTAGCATAGGT
CATGG--CTGTGGATCAGCAGAAATTCTTTGTTTGCTTTGTCGTTACCTGATCATAGATTAATCCGTAGGAATGTTAAGC
CATTTTAGTAGTCTATATATCTCAGTTGCATACAC-----ATGTAATCACTAGCTAAGATGCTGCCAAATGCCCGGTGTG
CCTG-TTTCTGGAAGGGTAAATGTTTTTTT----CTGCCAGACATCATGGAACAAATATATGTTTTTACAGATTATTATG
TACTGCCATTAGCGACAATCCATGAAAATTTCGCAAAAAAAT--AAAAAAGATTTGGCAAATGAGAACAGGTGATTAAAT
GCACAACAT-----------------------------------------------------------------------
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-----------------------------------GTAACGTACTGTAAGTGGTCGACAGAA-TCCACAAATTTTCTGTC
TTAGTCTCTAGTGTGCAAATCTATCATGCAGATGGCTACATAGGCAGATCAA----------------------------
---------------------------AATACGGGCAACATGTTGTTAGTACTTACTAGGAAGTAGGAAGGTGAACAACT
AAGTAAAAGTATACGTTACAAAACCCTGATCAATCTGTAGGCTTCTGATGAAGTTGTGTTCCTTCCGATGTTCAGGTTGT
AATGAACTACTTCCTGAATA-TTGTCTTCAGTCTACGTTACAAGCTATAAGGGCAGAGCCCCAGTTCACTTTTCCACTGT
GAAAAAAAATAA-AAAAAAATTGATGTCAGTTCACAGCGG-CACAGGCCATCGCCAAAAAGGGTGAGCAAGTTTGGCAGA
AAATAACCTTTACAAGCGGAAACCGCCACTTGGAGACTTTTCAAGCTCTACCACCAAACCACTAAAATATAGCAAATCTG
TTCGCAGCAAGAACTTGACGTTGATGCAGTGCCTCCAGCCACCAGACATCTCCTACTCCCTGGTATTCACTCTTCACTTC
CATCCTTAT
>chr6B_223
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--------------------------------------------------------------ACGATTATTACGGCTGAC
GGGTTGTTTTACATGATCTGATAGAGTTTGCTCCTAGCCC--CCGCCGTCCTGAACAGGAGATCAGCACACGAAAGAAAC
CATCGGGCTCAAAAAAGCGTGGGCTGCAAATCCTAGAGCACATGCCGGCGCGCGGTGCCGATACAGAACGTGATTGATCA
CCGACGGCAGAAAATCAATCAA----ACAAACAAACAAATCCTCACGCGACCAATGGCAACATCAGAGTGTATGTCAAAC
ATTATCCTGCGACCGCGAGCAAGTCTCGTCTTTT----TTTTCCTTCGACACGGCACGTCAGGCTGACAGCGGCGCTGCC
GGACGCCGCGGGCACAGGGTCGCGCTCGCGCGTGCGTGCACGTCATCGCTATCCAGGGAGAAACCGGTCAAACGGACAGC
GATGCGAGCAGCACCTGCAGAGGTACGAGGCGGCGCGCGGGCATCCATTCGCAGAGCATGACGTGGCGTGGCGTGGCGTC
GCCAGTGTGGACGGGGCCAAAGCCGTTCTCACCAGCCGGCGGGTGTGAACCGACGAGG-AATTCGAGAGGCGTCGGAAAA
GAGAACACGAGAGCGAAGGAGACCAACGGCTGCTGCATGCAAAAGCTGGCCCTGGCGACCCCTTCCACACCCACCAGCAC
CAACACGCGTAGCCGCGTAGGCGCACCCTTTATCAACCCGCGGCCTCGGCA-CGGCCCATGGTGAGCGTGGCA-------
GGCCGGCGAGCGAGCGCGCGAGCGATCACAATCACAATCACATCACGCCGTCTTCCACGGTGCGCGGCGGGAGCATGCAA
CGGCAGCGCTTCGGGTCTGACGAAGGTCCGGGAAGAAACCCCGCCGAGGAGAGGAGGCTCAAGAGACCCGCGACCGAGTC
GGAGGAGAC------CGGCGACGACGACGAACTGCCCCCGGGAACCAGGAGGAAGATGAAGGACACGCAGCAGAAGACGA
GGCCGAGCGGCAGCACCGCAGCCGGCGCAGGCG------CGGCGTCGTCGGCGTCCTCCGTCCGCGCCGTGCTGCAGGAC
TTCCTGGAGCAGCAGCAGCGCCTGGACGCGCAGCGGCAGGAGGCGGCGGCGCGGCACGCGCAGGAGCGGCTGGCCTTCGA
GCAGCAGTGGCGGCAGGAGATGCAGAGACTGGAGCGGGAGCGGCTGATGCTGGAGCAGGCGTGGCGGGAGCGCGAAGAGC
AAAGGAGGATGAGGGAGGAGGCCAGGGCCGAGCGGAGGGACGCGCTCCTCACCAACCTGCTCAACAAACTCTTGCGCGAT
GACTTTTAGGGAGTGACACGTGGCTCCACGACGC--GTGCCTAATAATAATCAACAAAATTTGTTACTGGTAGCATAGGT
TATGGCTCTGTGGGTCAGTAGAAATTCTTTGTTTGCTTTGTCTTCACCTGATCATAGATTAATCCGTAGGAATGTTAAGC
CATTTTAGTAGTCTATATATCTCAGTTGCATACAC-----ATGTAATCACTAGCTAAGATGCTGCCAAATGCTCTGCGTG
CCTT-TTTCTGGAAGGGTAAATGTTTT-TT----CTGCCAGACATCATGGAACAAATATACGTTTTTACAGATTATTATG
TACTGCCATTAGCGACAATCCATGAAAATTTCGCAAAGAAAT--AAAAAAGATTTGGCAAATGAGAACAGGTGAGTCATA
TGTTGTTGGAAATTCACTTTGACTCATAGGTGTATATGCACCCATTGTCTAAATACACATTTTAAAAAGTTAAAAAATTC
GAGAAAAAATCCCACATGTAAATCCGGACATTATACGTGCGTGCACCAAGTTTCGGTGAAAACGGACTTTTTGTGGCTTA
TGTAAAAAAAGACAATTTTTGATGCCTGATTATAGCTATTCACGAGGCAATTTTGTATCCCTTTTATACATGCCACAAAA
TATGTCCTATTCTTTTTATACATGCCACAAAATATGTCCTATTTCACCGAAACTTTGTGTGCGGACATATGATGTCCGTA
TGTACACACGGGTTTTTTCTAGAAATTTTTTAACATTTTGAAATGTGTTTTTATACATATTTCATAATAGGTGTATCTAT
ACCTAGGAGCCAAAATGCCACTCTCGTTATGTTTAATAACGTACTGTAAGTGGTCGACAGAA-TCCACAAATTTTCTGCC
-TAGTCTCTAGTGTGCAAATCTATCATGCAGATGGCTACATAGGTA----------------------------------
-----------------------GATCAATACGGGCAACATGTTGTTAGTACTTACTAGGAAG-------GTGTACAACA
AAGTAAAAGTATACGTTACAAAACCCTGATCAATCTGTAGGCTTG---TGAAGCTGTGTTCCTTCCGATGTTCAGATTGT
AATGAACTACTTCCTGAATATTTGTCTTCAGTCTACGTTACAAGCTATAAGGGCAGAGCCCCAGTTCACTTTTCCACTGA
----------AA-AAAAATTTTGATGTCAGTTCACAGCGGTCACAGGCCATCGCCATAAAGGGTGATCAAGTTTGGCAGA
AAATAACCTTTACAAACGAAAACCGCCACTTGGAGACTTTTCAAGCTCTACCACCAAACCACTAAAATATAGCACATCTG
TCCGCAGCAAGAACTTGACGTTGATGCAGTGCCACCAGTCACCAGACATCTCCTACTCCCTGGTATTCACTCTTCACTTC
CATACTTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-
---S--S---SS--------S--S----------------S----------SS-------------------S-------
-------------------S------------------------------------------------------------
-----S---------------------------S-----S---S---------------SS-S-----S-----------
----------------------SSSS---------------------------------S---S----------------
--------------------------------S-----------------------------------------------
---S-------------S--------------------------------------------------------------
---S-------------------S------------------------------S-------------------------
----------------------------------------------------------S----------------S----
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-----------------------------------------------S--------------------------------
--------------S---------------------------------S-------------------------------
-------S-------------------------S-S--------------------------------------------
---------SSSSSS---------------S---------------------------------S---------------
-S------------S----S------------------------S-----------------------------------
--------------------S-----------------------------------------------------------
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------------------------------------------------------S-----------------S-------
------------------------------------------S--S--S-S---------S-S-S---------S-----
------S-------------------------------------------------------------------------
-SS--------------S-----------------SSSSS---------------------------------S---SSS
SS--S-------------------------SSSS----------------S--------------------S--------
--------------------------------S---------SS------------------------------------
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--------------------------------------------------------------S-----------------
----------------------------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------------------------SSSS----S--------------
----------------S-------------------------------------------------------------S-
---------------------------------------S--S-------------------S-----------------
---------S-SS-------------------------------------------------------------------
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--------------------------S---S-----S-----------------S-------------------------
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>forward_27
-------GATGCGGGAGGTGGAAGAAA-----------------------------------------------------
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>reverse_2497
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----------------GGGGGTAGATCAATACGGGC--------------------------------------------
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