Multiple sequence alignment - TraesCS6A01G262000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G262000 chr6A 100.000 2459 0 0 1 2459 485158623 485156165 0.000000e+00 4542.0
1 TraesCS6A01G262000 chr6A 75.349 430 69 19 77 483 522423792 522423377 3.250000e-39 172.0
2 TraesCS6A01G262000 chr6D 93.844 1397 55 17 642 2021 344703106 344701724 0.000000e+00 2074.0
3 TraesCS6A01G262000 chr6D 93.878 441 20 4 2023 2459 344701661 344701224 0.000000e+00 658.0
4 TraesCS6A01G262000 chr6B 86.889 1861 115 62 642 2459 520547102 520545328 0.000000e+00 1965.0
5 TraesCS6A01G262000 chr6B 75.732 478 71 29 44 484 692644534 692645003 5.360000e-47 198.0
6 TraesCS6A01G262000 chr6B 79.741 232 37 6 194 423 508361610 508361387 2.530000e-35 159.0
7 TraesCS6A01G262000 chr5B 77.374 495 54 23 31 483 146910826 146911304 8.790000e-60 241.0
8 TraesCS6A01G262000 chr5B 79.724 217 39 5 267 482 614046430 614046642 4.240000e-33 152.0
9 TraesCS6A01G262000 chr3A 76.653 484 64 27 35 483 610046818 610047287 3.180000e-54 222.0
10 TraesCS6A01G262000 chr1B 77.184 412 61 16 44 423 585324096 585323686 2.480000e-50 209.0
11 TraesCS6A01G262000 chr2D 83.333 216 36 0 269 484 556316915 556316700 1.490000e-47 200.0
12 TraesCS6A01G262000 chr2B 85.027 187 25 1 267 453 202573021 202573204 1.160000e-43 187.0
13 TraesCS6A01G262000 chr5D 85.484 124 17 1 494 616 383580843 383580966 7.140000e-26 128.0
14 TraesCS6A01G262000 chr3D 79.412 136 22 6 486 617 18423572 18423705 9.360000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G262000 chr6A 485156165 485158623 2458 True 4542 4542 100.000 1 2459 1 chr6A.!!$R1 2458
1 TraesCS6A01G262000 chr6D 344701224 344703106 1882 True 1366 2074 93.861 642 2459 2 chr6D.!!$R1 1817
2 TraesCS6A01G262000 chr6B 520545328 520547102 1774 True 1965 1965 86.889 642 2459 1 chr6B.!!$R2 1817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 496 0.034863 TCCATTGGTCCGTAAAGCCC 60.035 55.0 1.86 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2365 0.804364 TCGCAGTGATGGATTGTTGC 59.196 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.420397 GACCTTCCGTGCACTACTC 57.580 57.895 16.19 0.00 0.00 2.59
19 20 0.889306 GACCTTCCGTGCACTACTCT 59.111 55.000 16.19 0.00 0.00 3.24
20 21 1.272769 GACCTTCCGTGCACTACTCTT 59.727 52.381 16.19 0.00 0.00 2.85
21 22 1.272769 ACCTTCCGTGCACTACTCTTC 59.727 52.381 16.19 0.00 0.00 2.87
22 23 1.404315 CCTTCCGTGCACTACTCTTCC 60.404 57.143 16.19 0.00 0.00 3.46
23 24 1.546476 CTTCCGTGCACTACTCTTCCT 59.454 52.381 16.19 0.00 0.00 3.36
24 25 2.502142 TCCGTGCACTACTCTTCCTA 57.498 50.000 16.19 0.00 0.00 2.94
25 26 2.799017 TCCGTGCACTACTCTTCCTAA 58.201 47.619 16.19 0.00 0.00 2.69
26 27 2.490903 TCCGTGCACTACTCTTCCTAAC 59.509 50.000 16.19 0.00 0.00 2.34
27 28 2.492484 CCGTGCACTACTCTTCCTAACT 59.508 50.000 16.19 0.00 0.00 2.24
28 29 3.502920 CGTGCACTACTCTTCCTAACTG 58.497 50.000 16.19 0.00 0.00 3.16
29 30 3.057456 CGTGCACTACTCTTCCTAACTGT 60.057 47.826 16.19 0.00 0.00 3.55
30 31 4.487019 GTGCACTACTCTTCCTAACTGTC 58.513 47.826 10.32 0.00 0.00 3.51
31 32 3.190744 TGCACTACTCTTCCTAACTGTCG 59.809 47.826 0.00 0.00 0.00 4.35
32 33 3.427773 GCACTACTCTTCCTAACTGTCGG 60.428 52.174 0.00 0.00 0.00 4.79
33 34 2.754002 ACTACTCTTCCTAACTGTCGGC 59.246 50.000 0.00 0.00 0.00 5.54
34 35 0.526662 ACTCTTCCTAACTGTCGGCG 59.473 55.000 0.00 0.00 0.00 6.46
35 36 0.809385 CTCTTCCTAACTGTCGGCGA 59.191 55.000 4.99 4.99 0.00 5.54
36 37 1.405821 CTCTTCCTAACTGTCGGCGAT 59.594 52.381 14.79 0.00 0.00 4.58
37 38 1.134367 TCTTCCTAACTGTCGGCGATG 59.866 52.381 14.79 12.16 0.00 3.84
38 39 0.892755 TTCCTAACTGTCGGCGATGT 59.107 50.000 14.79 12.87 0.00 3.06
39 40 0.172578 TCCTAACTGTCGGCGATGTG 59.827 55.000 14.79 9.04 0.00 3.21
40 41 1.421410 CCTAACTGTCGGCGATGTGC 61.421 60.000 14.79 0.00 45.38 4.57
49 50 3.181967 GCGATGTGCGAGCTTCGT 61.182 61.111 5.25 2.71 42.81 3.85
50 51 2.691522 CGATGTGCGAGCTTCGTG 59.308 61.111 7.27 0.00 42.81 4.35
51 52 2.792290 CGATGTGCGAGCTTCGTGG 61.792 63.158 7.27 0.00 42.81 4.94
52 53 1.738099 GATGTGCGAGCTTCGTGGT 60.738 57.895 7.27 0.00 42.81 4.16
53 54 1.687494 GATGTGCGAGCTTCGTGGTC 61.687 60.000 7.27 1.50 42.81 4.02
58 59 2.254651 GAGCTTCGTGGTCGTCGT 59.745 61.111 0.00 0.00 38.33 4.34
59 60 2.050351 AGCTTCGTGGTCGTCGTG 60.050 61.111 0.00 0.00 38.33 4.35
60 61 3.103911 GCTTCGTGGTCGTCGTGG 61.104 66.667 0.00 0.00 38.33 4.94
61 62 3.103911 CTTCGTGGTCGTCGTGGC 61.104 66.667 0.00 0.00 38.33 5.01
62 63 4.986587 TTCGTGGTCGTCGTGGCG 62.987 66.667 0.00 0.00 38.33 5.69
81 82 4.814294 GGCACGGACTCGGCGATT 62.814 66.667 11.27 4.13 41.39 3.34
82 83 2.813908 GCACGGACTCGGCGATTT 60.814 61.111 11.27 0.00 41.39 2.17
83 84 2.799540 GCACGGACTCGGCGATTTC 61.800 63.158 11.27 10.19 41.39 2.17
84 85 2.165301 CACGGACTCGGCGATTTCC 61.165 63.158 21.82 21.82 41.39 3.13
85 86 2.348888 ACGGACTCGGCGATTTCCT 61.349 57.895 26.17 15.45 41.39 3.36
86 87 1.589196 CGGACTCGGCGATTTCCTC 60.589 63.158 26.17 11.34 0.00 3.71
87 88 1.227292 GGACTCGGCGATTTCCTCC 60.227 63.158 23.54 13.62 0.00 4.30
88 89 1.677637 GGACTCGGCGATTTCCTCCT 61.678 60.000 23.54 0.00 0.00 3.69
89 90 0.249114 GACTCGGCGATTTCCTCCTC 60.249 60.000 11.27 0.00 0.00 3.71
90 91 1.068250 CTCGGCGATTTCCTCCTCC 59.932 63.158 11.27 0.00 0.00 4.30
91 92 1.381327 TCGGCGATTTCCTCCTCCT 60.381 57.895 4.99 0.00 0.00 3.69
92 93 0.976073 TCGGCGATTTCCTCCTCCTT 60.976 55.000 4.99 0.00 0.00 3.36
93 94 0.811616 CGGCGATTTCCTCCTCCTTG 60.812 60.000 0.00 0.00 0.00 3.61
94 95 0.253327 GGCGATTTCCTCCTCCTTGT 59.747 55.000 0.00 0.00 0.00 3.16
95 96 1.657822 GCGATTTCCTCCTCCTTGTC 58.342 55.000 0.00 0.00 0.00 3.18
96 97 1.927895 CGATTTCCTCCTCCTTGTCG 58.072 55.000 0.00 0.00 0.00 4.35
97 98 1.204941 CGATTTCCTCCTCCTTGTCGT 59.795 52.381 0.00 0.00 0.00 4.34
98 99 2.735762 CGATTTCCTCCTCCTTGTCGTC 60.736 54.545 0.00 0.00 0.00 4.20
99 100 0.601558 TTTCCTCCTCCTTGTCGTCG 59.398 55.000 0.00 0.00 0.00 5.12
100 101 1.248785 TTCCTCCTCCTTGTCGTCGG 61.249 60.000 0.00 0.00 0.00 4.79
101 102 1.977544 CCTCCTCCTTGTCGTCGGT 60.978 63.158 0.00 0.00 0.00 4.69
102 103 1.507174 CTCCTCCTTGTCGTCGGTC 59.493 63.158 0.00 0.00 0.00 4.79
103 104 0.961358 CTCCTCCTTGTCGTCGGTCT 60.961 60.000 0.00 0.00 0.00 3.85
104 105 0.959372 TCCTCCTTGTCGTCGGTCTC 60.959 60.000 0.00 0.00 0.00 3.36
105 106 1.134901 CTCCTTGTCGTCGGTCTCG 59.865 63.158 0.00 0.00 37.82 4.04
106 107 2.178521 CCTTGTCGTCGGTCTCGG 59.821 66.667 0.00 0.00 36.95 4.63
107 108 2.504244 CTTGTCGTCGGTCTCGGC 60.504 66.667 0.00 0.00 37.69 5.54
108 109 3.263503 CTTGTCGTCGGTCTCGGCA 62.264 63.158 0.00 0.00 41.75 5.69
109 110 3.289062 TGTCGTCGGTCTCGGCAA 61.289 61.111 0.00 0.00 41.75 4.52
110 111 2.049802 GTCGTCGGTCTCGGCAAA 60.050 61.111 0.00 0.00 41.75 3.68
111 112 2.049802 TCGTCGGTCTCGGCAAAC 60.050 61.111 0.00 0.00 41.75 2.93
112 113 2.355363 CGTCGGTCTCGGCAAACA 60.355 61.111 0.00 0.00 41.75 2.83
113 114 2.654912 CGTCGGTCTCGGCAAACAC 61.655 63.158 0.00 0.00 41.75 3.32
114 115 2.029964 TCGGTCTCGGCAAACACC 59.970 61.111 0.00 0.00 36.95 4.16
115 116 2.280524 CGGTCTCGGCAAACACCA 60.281 61.111 0.00 0.00 0.00 4.17
116 117 2.604174 CGGTCTCGGCAAACACCAC 61.604 63.158 0.00 0.00 0.00 4.16
117 118 2.258726 GGTCTCGGCAAACACCACC 61.259 63.158 0.00 0.00 0.00 4.61
118 119 1.227853 GTCTCGGCAAACACCACCT 60.228 57.895 0.00 0.00 0.00 4.00
119 120 1.070786 TCTCGGCAAACACCACCTC 59.929 57.895 0.00 0.00 0.00 3.85
120 121 2.280524 TCGGCAAACACCACCTCG 60.281 61.111 0.00 0.00 0.00 4.63
121 122 4.025401 CGGCAAACACCACCTCGC 62.025 66.667 0.00 0.00 0.00 5.03
122 123 3.670377 GGCAAACACCACCTCGCC 61.670 66.667 0.00 0.00 0.00 5.54
123 124 3.670377 GCAAACACCACCTCGCCC 61.670 66.667 0.00 0.00 0.00 6.13
124 125 3.353836 CAAACACCACCTCGCCCG 61.354 66.667 0.00 0.00 0.00 6.13
131 132 4.899239 CACCTCGCCCGCCTCATC 62.899 72.222 0.00 0.00 0.00 2.92
133 134 3.854669 CCTCGCCCGCCTCATCTT 61.855 66.667 0.00 0.00 0.00 2.40
134 135 2.279784 CTCGCCCGCCTCATCTTC 60.280 66.667 0.00 0.00 0.00 2.87
135 136 4.207281 TCGCCCGCCTCATCTTCG 62.207 66.667 0.00 0.00 0.00 3.79
137 138 4.838152 GCCCGCCTCATCTTCGCA 62.838 66.667 0.00 0.00 0.00 5.10
138 139 2.892425 CCCGCCTCATCTTCGCAC 60.892 66.667 0.00 0.00 0.00 5.34
139 140 2.185350 CCGCCTCATCTTCGCACT 59.815 61.111 0.00 0.00 0.00 4.40
140 141 2.169789 CCGCCTCATCTTCGCACTG 61.170 63.158 0.00 0.00 0.00 3.66
141 142 2.806856 CGCCTCATCTTCGCACTGC 61.807 63.158 0.00 0.00 0.00 4.40
142 143 2.467826 GCCTCATCTTCGCACTGCC 61.468 63.158 0.00 0.00 0.00 4.85
143 144 1.078918 CCTCATCTTCGCACTGCCA 60.079 57.895 0.00 0.00 0.00 4.92
144 145 1.088340 CCTCATCTTCGCACTGCCAG 61.088 60.000 0.00 0.00 0.00 4.85
145 146 1.703438 CTCATCTTCGCACTGCCAGC 61.703 60.000 0.00 0.00 0.00 4.85
176 177 4.489771 GCCACCTGCTGCCGGTAT 62.490 66.667 15.58 0.00 36.87 2.73
177 178 2.203070 CCACCTGCTGCCGGTATC 60.203 66.667 15.58 0.00 32.37 2.24
178 179 2.586079 CACCTGCTGCCGGTATCG 60.586 66.667 15.58 0.07 32.37 2.92
179 180 4.530857 ACCTGCTGCCGGTATCGC 62.531 66.667 14.43 0.00 31.69 4.58
181 182 4.529219 CTGCTGCCGGTATCGCCA 62.529 66.667 1.90 0.00 36.97 5.69
182 183 4.529219 TGCTGCCGGTATCGCCAG 62.529 66.667 1.19 1.19 43.64 4.85
210 211 3.855630 CGGAGCAGTAGGATTCGAG 57.144 57.895 0.00 0.00 0.00 4.04
211 212 0.318275 CGGAGCAGTAGGATTCGAGC 60.318 60.000 0.00 0.00 0.00 5.03
212 213 0.747255 GGAGCAGTAGGATTCGAGCA 59.253 55.000 0.00 0.00 0.00 4.26
213 214 1.269517 GGAGCAGTAGGATTCGAGCAG 60.270 57.143 0.00 0.00 0.00 4.24
214 215 1.407258 GAGCAGTAGGATTCGAGCAGT 59.593 52.381 0.00 0.00 0.00 4.40
215 216 1.135915 AGCAGTAGGATTCGAGCAGTG 59.864 52.381 0.00 0.00 0.00 3.66
216 217 1.565305 CAGTAGGATTCGAGCAGTGC 58.435 55.000 7.13 7.13 0.00 4.40
217 218 0.461961 AGTAGGATTCGAGCAGTGCC 59.538 55.000 12.58 2.23 0.00 5.01
218 219 0.461961 GTAGGATTCGAGCAGTGCCT 59.538 55.000 12.58 2.01 0.00 4.75
219 220 0.747255 TAGGATTCGAGCAGTGCCTC 59.253 55.000 12.58 7.95 0.00 4.70
220 221 1.522580 GGATTCGAGCAGTGCCTCC 60.523 63.158 12.58 6.98 0.00 4.30
221 222 1.519719 GATTCGAGCAGTGCCTCCT 59.480 57.895 12.58 0.00 0.00 3.69
222 223 0.809241 GATTCGAGCAGTGCCTCCTG 60.809 60.000 12.58 0.00 35.49 3.86
232 233 3.550431 GCCTCCTGCTCCGCCATA 61.550 66.667 0.00 0.00 36.87 2.74
233 234 2.888447 GCCTCCTGCTCCGCCATAT 61.888 63.158 0.00 0.00 36.87 1.78
234 235 1.757306 CCTCCTGCTCCGCCATATT 59.243 57.895 0.00 0.00 0.00 1.28
235 236 0.321122 CCTCCTGCTCCGCCATATTC 60.321 60.000 0.00 0.00 0.00 1.75
236 237 0.668706 CTCCTGCTCCGCCATATTCG 60.669 60.000 0.00 0.00 0.00 3.34
237 238 2.320587 CCTGCTCCGCCATATTCGC 61.321 63.158 0.00 0.00 0.00 4.70
243 244 3.234390 CGCCATATTCGCGTCTGG 58.766 61.111 5.77 10.13 44.55 3.86
244 245 2.939022 GCCATATTCGCGTCTGGC 59.061 61.111 21.23 21.23 46.54 4.85
269 270 3.842923 CTCTGCCGGCGGTGAGAT 61.843 66.667 33.59 0.00 31.11 2.75
270 271 4.147449 TCTGCCGGCGGTGAGATG 62.147 66.667 33.59 11.21 0.00 2.90
274 275 3.842923 CCGGCGGTGAGATGCTCT 61.843 66.667 19.97 0.00 0.00 4.09
275 276 2.185350 CGGCGGTGAGATGCTCTT 59.815 61.111 0.00 0.00 0.00 2.85
276 277 2.169789 CGGCGGTGAGATGCTCTTG 61.170 63.158 0.00 0.00 0.00 3.02
277 278 1.817099 GGCGGTGAGATGCTCTTGG 60.817 63.158 0.00 0.00 0.00 3.61
278 279 1.219124 GCGGTGAGATGCTCTTGGA 59.781 57.895 0.00 0.00 0.00 3.53
279 280 0.809241 GCGGTGAGATGCTCTTGGAG 60.809 60.000 0.00 0.00 0.00 3.86
280 281 0.179089 CGGTGAGATGCTCTTGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
281 282 1.198713 GGTGAGATGCTCTTGGAGGA 58.801 55.000 0.00 0.00 33.93 3.71
282 283 1.138661 GGTGAGATGCTCTTGGAGGAG 59.861 57.143 0.00 0.00 32.71 3.69
283 284 1.138661 GTGAGATGCTCTTGGAGGAGG 59.861 57.143 0.00 0.00 32.71 4.30
284 285 1.273495 TGAGATGCTCTTGGAGGAGGT 60.273 52.381 0.00 0.00 32.71 3.85
285 286 1.138661 GAGATGCTCTTGGAGGAGGTG 59.861 57.143 0.00 0.00 32.71 4.00
286 287 0.179936 GATGCTCTTGGAGGAGGTGG 59.820 60.000 0.00 0.00 32.71 4.61
287 288 0.548682 ATGCTCTTGGAGGAGGTGGT 60.549 55.000 0.00 0.00 32.71 4.16
288 289 1.298014 GCTCTTGGAGGAGGTGGTG 59.702 63.158 0.00 0.00 34.21 4.17
289 290 1.986413 CTCTTGGAGGAGGTGGTGG 59.014 63.158 0.00 0.00 0.00 4.61
290 291 0.838122 CTCTTGGAGGAGGTGGTGGT 60.838 60.000 0.00 0.00 0.00 4.16
291 292 0.401395 TCTTGGAGGAGGTGGTGGTT 60.401 55.000 0.00 0.00 0.00 3.67
292 293 0.250901 CTTGGAGGAGGTGGTGGTTG 60.251 60.000 0.00 0.00 0.00 3.77
293 294 0.991355 TTGGAGGAGGTGGTGGTTGT 60.991 55.000 0.00 0.00 0.00 3.32
294 295 1.073199 GGAGGAGGTGGTGGTTGTG 59.927 63.158 0.00 0.00 0.00 3.33
295 296 1.073199 GAGGAGGTGGTGGTTGTGG 59.927 63.158 0.00 0.00 0.00 4.17
296 297 2.115266 GGAGGTGGTGGTTGTGGG 59.885 66.667 0.00 0.00 0.00 4.61
297 298 2.457323 GGAGGTGGTGGTTGTGGGA 61.457 63.158 0.00 0.00 0.00 4.37
298 299 1.073199 GAGGTGGTGGTTGTGGGAG 59.927 63.158 0.00 0.00 0.00 4.30
299 300 2.115266 GGTGGTGGTTGTGGGAGG 59.885 66.667 0.00 0.00 0.00 4.30
300 301 2.597510 GTGGTGGTTGTGGGAGGC 60.598 66.667 0.00 0.00 0.00 4.70
301 302 3.099841 TGGTGGTTGTGGGAGGCA 61.100 61.111 0.00 0.00 0.00 4.75
302 303 2.440599 GGTGGTTGTGGGAGGCAT 59.559 61.111 0.00 0.00 0.00 4.40
303 304 1.678970 GGTGGTTGTGGGAGGCATC 60.679 63.158 0.00 0.00 0.00 3.91
304 305 2.040544 GTGGTTGTGGGAGGCATCG 61.041 63.158 0.00 0.00 0.00 3.84
305 306 2.438434 GGTTGTGGGAGGCATCGG 60.438 66.667 0.00 0.00 0.00 4.18
306 307 3.134127 GTTGTGGGAGGCATCGGC 61.134 66.667 0.00 0.00 40.13 5.54
322 323 4.103103 GCCTGCGCTTCCCGAAAC 62.103 66.667 9.73 0.00 40.02 2.78
323 324 2.358737 CCTGCGCTTCCCGAAACT 60.359 61.111 9.73 0.00 40.02 2.66
324 325 2.680913 CCTGCGCTTCCCGAAACTG 61.681 63.158 9.73 0.00 40.02 3.16
325 326 3.314388 CTGCGCTTCCCGAAACTGC 62.314 63.158 9.73 0.00 40.02 4.40
326 327 3.050275 GCGCTTCCCGAAACTGCT 61.050 61.111 0.00 0.00 40.02 4.24
327 328 3.028366 GCGCTTCCCGAAACTGCTC 62.028 63.158 0.00 0.00 40.02 4.26
328 329 2.391389 CGCTTCCCGAAACTGCTCC 61.391 63.158 0.00 0.00 40.02 4.70
329 330 1.003233 GCTTCCCGAAACTGCTCCT 60.003 57.895 0.00 0.00 0.00 3.69
330 331 1.021920 GCTTCCCGAAACTGCTCCTC 61.022 60.000 0.00 0.00 0.00 3.71
331 332 0.391793 CTTCCCGAAACTGCTCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
332 333 0.836400 TTCCCGAAACTGCTCCTCCT 60.836 55.000 0.00 0.00 0.00 3.69
333 334 1.078848 CCCGAAACTGCTCCTCCTG 60.079 63.158 0.00 0.00 0.00 3.86
334 335 1.743252 CCGAAACTGCTCCTCCTGC 60.743 63.158 0.00 0.00 0.00 4.85
335 336 1.294780 CGAAACTGCTCCTCCTGCT 59.705 57.895 0.00 0.00 0.00 4.24
336 337 0.739112 CGAAACTGCTCCTCCTGCTC 60.739 60.000 0.00 0.00 0.00 4.26
337 338 0.392327 GAAACTGCTCCTCCTGCTCC 60.392 60.000 0.00 0.00 0.00 4.70
338 339 0.839853 AAACTGCTCCTCCTGCTCCT 60.840 55.000 0.00 0.00 0.00 3.69
339 340 1.264045 AACTGCTCCTCCTGCTCCTC 61.264 60.000 0.00 0.00 0.00 3.71
340 341 2.364842 TGCTCCTCCTGCTCCTCC 60.365 66.667 0.00 0.00 0.00 4.30
341 342 3.160748 GCTCCTCCTGCTCCTCCC 61.161 72.222 0.00 0.00 0.00 4.30
342 343 2.837291 CTCCTCCTGCTCCTCCCG 60.837 72.222 0.00 0.00 0.00 5.14
345 346 4.154347 CTCCTGCTCCTCCCGCAC 62.154 72.222 0.00 0.00 33.19 5.34
348 349 3.790437 CTGCTCCTCCCGCACCAT 61.790 66.667 0.00 0.00 33.19 3.55
349 350 4.100084 TGCTCCTCCCGCACCATG 62.100 66.667 0.00 0.00 31.40 3.66
350 351 4.101448 GCTCCTCCCGCACCATGT 62.101 66.667 0.00 0.00 0.00 3.21
351 352 2.187946 CTCCTCCCGCACCATGTC 59.812 66.667 0.00 0.00 0.00 3.06
352 353 3.391665 CTCCTCCCGCACCATGTCC 62.392 68.421 0.00 0.00 0.00 4.02
353 354 3.716195 CCTCCCGCACCATGTCCA 61.716 66.667 0.00 0.00 0.00 4.02
354 355 2.591753 CTCCCGCACCATGTCCAT 59.408 61.111 0.00 0.00 0.00 3.41
355 356 1.820906 CTCCCGCACCATGTCCATG 60.821 63.158 0.14 0.14 38.51 3.66
356 357 2.045045 CCCGCACCATGTCCATGT 60.045 61.111 6.53 0.00 37.11 3.21
357 358 1.223211 CCCGCACCATGTCCATGTA 59.777 57.895 6.53 0.00 37.11 2.29
358 359 0.393673 CCCGCACCATGTCCATGTAA 60.394 55.000 6.53 0.00 37.11 2.41
359 360 1.679139 CCGCACCATGTCCATGTAAT 58.321 50.000 6.53 0.00 37.11 1.89
360 361 1.334556 CCGCACCATGTCCATGTAATG 59.665 52.381 6.53 3.54 46.21 1.90
370 371 2.404083 CATGTAATGGACACGGGCC 58.596 57.895 0.00 0.00 42.17 5.80
371 372 0.107214 CATGTAATGGACACGGGCCT 60.107 55.000 0.84 0.00 42.17 5.19
372 373 0.180406 ATGTAATGGACACGGGCCTC 59.820 55.000 0.84 0.00 42.17 4.70
373 374 1.520787 GTAATGGACACGGGCCTCG 60.521 63.158 0.84 7.48 45.88 4.63
374 375 3.379865 TAATGGACACGGGCCTCGC 62.380 63.158 12.78 0.00 43.89 5.03
384 385 2.426023 GGCCTCGCCGATGGTTAT 59.574 61.111 0.00 0.00 39.62 1.89
385 386 1.961277 GGCCTCGCCGATGGTTATG 60.961 63.158 0.00 0.00 39.62 1.90
386 387 1.961277 GCCTCGCCGATGGTTATGG 60.961 63.158 0.00 0.00 0.00 2.74
387 388 1.445942 CCTCGCCGATGGTTATGGT 59.554 57.895 0.00 0.00 0.00 3.55
388 389 0.880278 CCTCGCCGATGGTTATGGTG 60.880 60.000 0.00 0.00 34.58 4.17
389 390 1.498865 CTCGCCGATGGTTATGGTGC 61.499 60.000 0.00 0.00 33.30 5.01
390 391 1.817520 CGCCGATGGTTATGGTGCA 60.818 57.895 0.00 0.00 0.00 4.57
391 392 1.372838 CGCCGATGGTTATGGTGCAA 61.373 55.000 0.00 0.00 0.00 4.08
392 393 1.032014 GCCGATGGTTATGGTGCAAT 58.968 50.000 0.00 0.00 0.00 3.56
393 394 1.269206 GCCGATGGTTATGGTGCAATG 60.269 52.381 0.00 0.00 0.00 2.82
394 395 1.269206 CCGATGGTTATGGTGCAATGC 60.269 52.381 0.00 0.00 0.00 3.56
395 396 1.404748 CGATGGTTATGGTGCAATGCA 59.595 47.619 2.72 2.72 35.60 3.96
418 419 3.775654 GACGGGGGCACAGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
421 422 3.086600 GGGGGCACAGAGGAGGAG 61.087 72.222 0.00 0.00 0.00 3.69
422 423 3.086600 GGGGCACAGAGGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
423 424 2.039624 GGGCACAGAGGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
424 425 1.613630 GGGCACAGAGGAGGAGGAA 60.614 63.158 0.00 0.00 0.00 3.36
425 426 1.621672 GGGCACAGAGGAGGAGGAAG 61.622 65.000 0.00 0.00 0.00 3.46
426 427 1.621672 GGCACAGAGGAGGAGGAAGG 61.622 65.000 0.00 0.00 0.00 3.46
427 428 0.907230 GCACAGAGGAGGAGGAAGGT 60.907 60.000 0.00 0.00 0.00 3.50
428 429 0.901124 CACAGAGGAGGAGGAAGGTG 59.099 60.000 0.00 0.00 0.00 4.00
429 430 0.252467 ACAGAGGAGGAGGAAGGTGG 60.252 60.000 0.00 0.00 0.00 4.61
430 431 1.306568 AGAGGAGGAGGAAGGTGGC 60.307 63.158 0.00 0.00 0.00 5.01
431 432 1.306568 GAGGAGGAGGAAGGTGGCT 60.307 63.158 0.00 0.00 0.00 4.75
432 433 1.306568 AGGAGGAGGAAGGTGGCTC 60.307 63.158 0.00 0.00 0.00 4.70
433 434 2.726351 GGAGGAGGAAGGTGGCTCG 61.726 68.421 0.00 0.00 0.00 5.03
434 435 2.685380 AGGAGGAAGGTGGCTCGG 60.685 66.667 0.00 0.00 0.00 4.63
435 436 2.683933 GGAGGAAGGTGGCTCGGA 60.684 66.667 0.00 0.00 0.00 4.55
436 437 2.726351 GGAGGAAGGTGGCTCGGAG 61.726 68.421 0.00 0.00 0.00 4.63
437 438 2.685380 AGGAAGGTGGCTCGGAGG 60.685 66.667 7.20 0.00 0.00 4.30
438 439 2.683933 GGAAGGTGGCTCGGAGGA 60.684 66.667 7.20 0.00 0.00 3.71
439 440 2.726351 GGAAGGTGGCTCGGAGGAG 61.726 68.421 7.20 0.00 43.46 3.69
440 441 2.685380 AAGGTGGCTCGGAGGAGG 60.685 66.667 7.20 0.00 40.80 4.30
441 442 3.239627 AAGGTGGCTCGGAGGAGGA 62.240 63.158 7.20 0.00 40.80 3.71
442 443 3.151022 GGTGGCTCGGAGGAGGAG 61.151 72.222 7.20 0.00 40.80 3.69
443 444 3.151022 GTGGCTCGGAGGAGGAGG 61.151 72.222 7.20 0.00 40.80 4.30
444 445 3.347590 TGGCTCGGAGGAGGAGGA 61.348 66.667 7.20 0.00 40.80 3.71
445 446 2.200092 GGCTCGGAGGAGGAGGAT 59.800 66.667 7.20 0.00 40.80 3.24
446 447 1.361176 TGGCTCGGAGGAGGAGGATA 61.361 60.000 7.20 0.00 40.80 2.59
447 448 0.610785 GGCTCGGAGGAGGAGGATAG 60.611 65.000 7.20 0.00 40.80 2.08
448 449 0.111639 GCTCGGAGGAGGAGGATAGT 59.888 60.000 7.20 0.00 40.80 2.12
449 450 1.904287 CTCGGAGGAGGAGGATAGTG 58.096 60.000 0.00 0.00 36.61 2.74
450 451 0.478942 TCGGAGGAGGAGGATAGTGG 59.521 60.000 0.00 0.00 0.00 4.00
451 452 1.182385 CGGAGGAGGAGGATAGTGGC 61.182 65.000 0.00 0.00 0.00 5.01
452 453 1.182385 GGAGGAGGAGGATAGTGGCG 61.182 65.000 0.00 0.00 0.00 5.69
453 454 0.468400 GAGGAGGAGGATAGTGGCGT 60.468 60.000 0.00 0.00 0.00 5.68
454 455 0.468400 AGGAGGAGGATAGTGGCGTC 60.468 60.000 0.00 0.00 0.00 5.19
455 456 1.655329 GAGGAGGATAGTGGCGTCG 59.345 63.158 0.00 0.00 0.00 5.12
456 457 1.076923 AGGAGGATAGTGGCGTCGT 60.077 57.895 0.00 0.00 0.00 4.34
457 458 0.683504 AGGAGGATAGTGGCGTCGTT 60.684 55.000 0.00 0.00 0.00 3.85
458 459 0.175073 GGAGGATAGTGGCGTCGTTT 59.825 55.000 0.00 0.00 0.00 3.60
459 460 1.557651 GAGGATAGTGGCGTCGTTTC 58.442 55.000 0.00 0.00 0.00 2.78
460 461 0.892755 AGGATAGTGGCGTCGTTTCA 59.107 50.000 0.00 0.00 0.00 2.69
461 462 1.480954 AGGATAGTGGCGTCGTTTCAT 59.519 47.619 0.00 0.00 0.00 2.57
462 463 1.859080 GGATAGTGGCGTCGTTTCATC 59.141 52.381 0.00 0.00 0.00 2.92
463 464 1.517276 GATAGTGGCGTCGTTTCATCG 59.483 52.381 0.00 0.00 0.00 3.84
464 465 0.241749 TAGTGGCGTCGTTTCATCGT 59.758 50.000 0.00 0.00 0.00 3.73
465 466 1.007336 AGTGGCGTCGTTTCATCGTC 61.007 55.000 0.00 0.00 0.00 4.20
466 467 2.084101 TGGCGTCGTTTCATCGTCG 61.084 57.895 0.00 0.00 42.71 5.12
467 468 2.687436 GCGTCGTTTCATCGTCGG 59.313 61.111 7.60 0.00 40.98 4.79
468 469 1.798725 GCGTCGTTTCATCGTCGGA 60.799 57.895 7.60 0.00 40.98 4.55
469 470 1.339235 GCGTCGTTTCATCGTCGGAA 61.339 55.000 7.60 0.00 40.98 4.30
470 471 0.633733 CGTCGTTTCATCGTCGGAAG 59.366 55.000 0.00 0.00 38.28 3.46
471 472 1.694639 GTCGTTTCATCGTCGGAAGT 58.305 50.000 0.00 0.00 0.00 3.01
472 473 1.385743 GTCGTTTCATCGTCGGAAGTG 59.614 52.381 0.00 0.00 0.00 3.16
473 474 1.001048 TCGTTTCATCGTCGGAAGTGT 60.001 47.619 0.00 0.00 0.00 3.55
474 475 1.385743 CGTTTCATCGTCGGAAGTGTC 59.614 52.381 0.00 0.00 0.00 3.67
475 476 1.725164 GTTTCATCGTCGGAAGTGTCC 59.275 52.381 0.00 0.00 41.01 4.02
476 477 1.254026 TTCATCGTCGGAAGTGTCCT 58.746 50.000 0.00 0.00 42.44 3.85
477 478 0.809385 TCATCGTCGGAAGTGTCCTC 59.191 55.000 0.00 0.00 42.44 3.71
478 479 0.179134 CATCGTCGGAAGTGTCCTCC 60.179 60.000 0.00 0.00 42.44 4.30
479 480 0.611062 ATCGTCGGAAGTGTCCTCCA 60.611 55.000 0.00 0.00 42.44 3.86
480 481 0.611062 TCGTCGGAAGTGTCCTCCAT 60.611 55.000 0.00 0.00 42.44 3.41
481 482 0.246635 CGTCGGAAGTGTCCTCCATT 59.753 55.000 0.00 0.00 42.44 3.16
482 483 1.726853 GTCGGAAGTGTCCTCCATTG 58.273 55.000 0.00 0.00 42.44 2.82
483 484 0.613260 TCGGAAGTGTCCTCCATTGG 59.387 55.000 0.00 0.00 42.44 3.16
484 485 0.324943 CGGAAGTGTCCTCCATTGGT 59.675 55.000 1.86 0.00 42.44 3.67
485 486 1.676014 CGGAAGTGTCCTCCATTGGTC 60.676 57.143 1.86 0.00 42.44 4.02
486 487 1.340114 GGAAGTGTCCTCCATTGGTCC 60.340 57.143 1.86 0.00 41.24 4.46
487 488 0.324943 AAGTGTCCTCCATTGGTCCG 59.675 55.000 1.86 0.00 0.00 4.79
488 489 0.836400 AGTGTCCTCCATTGGTCCGT 60.836 55.000 1.86 0.00 0.00 4.69
489 490 0.899720 GTGTCCTCCATTGGTCCGTA 59.100 55.000 1.86 0.00 0.00 4.02
490 491 1.276989 GTGTCCTCCATTGGTCCGTAA 59.723 52.381 1.86 0.00 0.00 3.18
491 492 1.979308 TGTCCTCCATTGGTCCGTAAA 59.021 47.619 1.86 0.00 0.00 2.01
492 493 2.027561 TGTCCTCCATTGGTCCGTAAAG 60.028 50.000 1.86 0.00 0.00 1.85
493 494 1.065709 TCCTCCATTGGTCCGTAAAGC 60.066 52.381 1.86 0.00 0.00 3.51
494 495 1.379527 CTCCATTGGTCCGTAAAGCC 58.620 55.000 1.86 0.00 0.00 4.35
495 496 0.034863 TCCATTGGTCCGTAAAGCCC 60.035 55.000 1.86 0.00 0.00 5.19
496 497 1.035385 CCATTGGTCCGTAAAGCCCC 61.035 60.000 0.00 0.00 0.00 5.80
497 498 1.035385 CATTGGTCCGTAAAGCCCCC 61.035 60.000 0.00 0.00 0.00 5.40
498 499 1.502527 ATTGGTCCGTAAAGCCCCCA 61.503 55.000 0.00 0.00 0.00 4.96
499 500 1.502527 TTGGTCCGTAAAGCCCCCAT 61.503 55.000 0.00 0.00 0.00 4.00
500 501 0.620990 TGGTCCGTAAAGCCCCCATA 60.621 55.000 0.00 0.00 0.00 2.74
501 502 0.769247 GGTCCGTAAAGCCCCCATAT 59.231 55.000 0.00 0.00 0.00 1.78
502 503 1.144298 GGTCCGTAAAGCCCCCATATT 59.856 52.381 0.00 0.00 0.00 1.28
503 504 2.423803 GGTCCGTAAAGCCCCCATATTT 60.424 50.000 0.00 0.00 0.00 1.40
504 505 2.621526 GTCCGTAAAGCCCCCATATTTG 59.378 50.000 0.00 0.00 0.00 2.32
505 506 2.242708 TCCGTAAAGCCCCCATATTTGT 59.757 45.455 0.00 0.00 0.00 2.83
506 507 2.621526 CCGTAAAGCCCCCATATTTGTC 59.378 50.000 0.00 0.00 0.00 3.18
507 508 3.551846 CGTAAAGCCCCCATATTTGTCT 58.448 45.455 0.00 0.00 0.00 3.41
508 509 3.564225 CGTAAAGCCCCCATATTTGTCTC 59.436 47.826 0.00 0.00 0.00 3.36
509 510 2.755952 AAGCCCCCATATTTGTCTCC 57.244 50.000 0.00 0.00 0.00 3.71
510 511 0.474184 AGCCCCCATATTTGTCTCCG 59.526 55.000 0.00 0.00 0.00 4.63
511 512 1.172812 GCCCCCATATTTGTCTCCGC 61.173 60.000 0.00 0.00 0.00 5.54
512 513 0.474184 CCCCCATATTTGTCTCCGCT 59.526 55.000 0.00 0.00 0.00 5.52
513 514 1.133792 CCCCCATATTTGTCTCCGCTT 60.134 52.381 0.00 0.00 0.00 4.68
514 515 1.949525 CCCCATATTTGTCTCCGCTTG 59.050 52.381 0.00 0.00 0.00 4.01
515 516 2.643551 CCCATATTTGTCTCCGCTTGT 58.356 47.619 0.00 0.00 0.00 3.16
516 517 2.355756 CCCATATTTGTCTCCGCTTGTG 59.644 50.000 0.00 0.00 0.00 3.33
517 518 2.355756 CCATATTTGTCTCCGCTTGTGG 59.644 50.000 0.00 0.00 0.00 4.17
518 519 2.107950 TATTTGTCTCCGCTTGTGGG 57.892 50.000 0.00 0.00 0.00 4.61
519 520 0.400213 ATTTGTCTCCGCTTGTGGGA 59.600 50.000 0.00 0.00 0.00 4.37
525 526 3.551259 TCCGCTTGTGGGAGAAATC 57.449 52.632 0.00 0.00 0.00 2.17
526 527 0.391130 TCCGCTTGTGGGAGAAATCG 60.391 55.000 0.00 0.00 0.00 3.34
527 528 1.425428 CGCTTGTGGGAGAAATCGC 59.575 57.895 0.00 0.00 0.00 4.58
528 529 1.425428 GCTTGTGGGAGAAATCGCG 59.575 57.895 0.00 0.00 0.00 5.87
529 530 1.298859 GCTTGTGGGAGAAATCGCGT 61.299 55.000 5.77 0.00 0.00 6.01
530 531 1.156736 CTTGTGGGAGAAATCGCGTT 58.843 50.000 5.77 0.00 0.00 4.84
531 532 1.128692 CTTGTGGGAGAAATCGCGTTC 59.871 52.381 5.77 3.24 0.00 3.95
532 533 1.011968 TGTGGGAGAAATCGCGTTCG 61.012 55.000 5.77 0.00 32.50 3.95
533 534 1.447140 TGGGAGAAATCGCGTTCGG 60.447 57.895 5.77 0.00 36.13 4.30
534 535 1.153706 GGGAGAAATCGCGTTCGGA 60.154 57.895 5.77 0.00 36.13 4.55
535 536 1.419107 GGGAGAAATCGCGTTCGGAC 61.419 60.000 5.77 1.40 36.13 4.79
536 537 1.419107 GGAGAAATCGCGTTCGGACC 61.419 60.000 5.77 6.79 36.13 4.46
537 538 1.740043 GAGAAATCGCGTTCGGACCG 61.740 60.000 7.84 7.84 36.13 4.79
553 554 2.025727 CGCTCCACGGACCGATAC 59.974 66.667 23.38 4.02 38.44 2.24
554 555 2.478890 CGCTCCACGGACCGATACT 61.479 63.158 23.38 0.00 38.44 2.12
555 556 1.162181 CGCTCCACGGACCGATACTA 61.162 60.000 23.38 0.00 38.44 1.82
556 557 0.592148 GCTCCACGGACCGATACTAG 59.408 60.000 23.38 11.01 0.00 2.57
557 558 0.592148 CTCCACGGACCGATACTAGC 59.408 60.000 23.38 0.00 0.00 3.42
558 559 0.820891 TCCACGGACCGATACTAGCC 60.821 60.000 23.38 0.00 0.00 3.93
559 560 1.658673 CACGGACCGATACTAGCCC 59.341 63.158 23.38 0.00 0.00 5.19
560 561 1.895707 ACGGACCGATACTAGCCCG 60.896 63.158 23.38 0.00 42.30 6.13
561 562 2.649614 GGACCGATACTAGCCCGC 59.350 66.667 0.00 0.00 0.00 6.13
562 563 2.649614 GACCGATACTAGCCCGCC 59.350 66.667 0.00 0.00 0.00 6.13
563 564 1.902432 GACCGATACTAGCCCGCCT 60.902 63.158 0.00 0.00 0.00 5.52
564 565 1.457079 ACCGATACTAGCCCGCCTT 60.457 57.895 0.00 0.00 0.00 4.35
565 566 1.006102 CCGATACTAGCCCGCCTTG 60.006 63.158 0.00 0.00 0.00 3.61
566 567 1.006102 CGATACTAGCCCGCCTTGG 60.006 63.158 0.00 0.00 37.55 3.61
567 568 1.461091 CGATACTAGCCCGCCTTGGA 61.461 60.000 0.00 0.00 42.00 3.53
568 569 0.977395 GATACTAGCCCGCCTTGGAT 59.023 55.000 0.00 0.00 42.00 3.41
569 570 0.687354 ATACTAGCCCGCCTTGGATG 59.313 55.000 0.00 0.00 42.00 3.51
570 571 1.407656 TACTAGCCCGCCTTGGATGG 61.408 60.000 0.00 0.00 42.00 3.51
582 583 2.268920 GGATGGCTTCCGCTGTCA 59.731 61.111 3.39 0.00 33.93 3.58
583 584 1.817099 GGATGGCTTCCGCTGTCAG 60.817 63.158 3.39 0.00 33.93 3.51
584 585 1.817099 GATGGCTTCCGCTGTCAGG 60.817 63.158 1.14 0.00 36.09 3.86
585 586 2.244117 GATGGCTTCCGCTGTCAGGA 62.244 60.000 1.14 0.00 36.09 3.86
586 587 2.435059 GGCTTCCGCTGTCAGGAC 60.435 66.667 1.14 0.00 37.53 3.85
587 588 2.343758 GCTTCCGCTGTCAGGACA 59.656 61.111 1.14 1.70 37.53 4.02
595 596 2.734591 TGTCAGGACAGCACGGTC 59.265 61.111 0.00 0.00 36.21 4.79
610 611 4.034258 GTCCGGACGCGTGTGAGA 62.034 66.667 20.70 4.92 0.00 3.27
611 612 3.733960 TCCGGACGCGTGTGAGAG 61.734 66.667 20.70 0.38 0.00 3.20
612 613 4.778415 CCGGACGCGTGTGAGAGG 62.778 72.222 20.70 6.67 0.00 3.69
613 614 4.039357 CGGACGCGTGTGAGAGGT 62.039 66.667 20.70 0.00 0.00 3.85
614 615 2.338984 GGACGCGTGTGAGAGGTT 59.661 61.111 20.70 0.00 0.00 3.50
615 616 1.300697 GGACGCGTGTGAGAGGTTT 60.301 57.895 20.70 0.00 0.00 3.27
616 617 1.557443 GGACGCGTGTGAGAGGTTTG 61.557 60.000 20.70 0.00 0.00 2.93
617 618 0.874607 GACGCGTGTGAGAGGTTTGT 60.875 55.000 20.70 0.00 0.00 2.83
618 619 1.151777 ACGCGTGTGAGAGGTTTGTG 61.152 55.000 12.93 0.00 0.00 3.33
619 620 1.151777 CGCGTGTGAGAGGTTTGTGT 61.152 55.000 0.00 0.00 0.00 3.72
620 621 0.304705 GCGTGTGAGAGGTTTGTGTG 59.695 55.000 0.00 0.00 0.00 3.82
621 622 1.651987 CGTGTGAGAGGTTTGTGTGT 58.348 50.000 0.00 0.00 0.00 3.72
622 623 1.593006 CGTGTGAGAGGTTTGTGTGTC 59.407 52.381 0.00 0.00 0.00 3.67
623 624 1.593006 GTGTGAGAGGTTTGTGTGTCG 59.407 52.381 0.00 0.00 0.00 4.35
624 625 1.217882 GTGAGAGGTTTGTGTGTCGG 58.782 55.000 0.00 0.00 0.00 4.79
625 626 0.828022 TGAGAGGTTTGTGTGTCGGT 59.172 50.000 0.00 0.00 0.00 4.69
626 627 1.217882 GAGAGGTTTGTGTGTCGGTG 58.782 55.000 0.00 0.00 0.00 4.94
627 628 0.539986 AGAGGTTTGTGTGTCGGTGT 59.460 50.000 0.00 0.00 0.00 4.16
628 629 1.065709 AGAGGTTTGTGTGTCGGTGTT 60.066 47.619 0.00 0.00 0.00 3.32
629 630 1.063469 GAGGTTTGTGTGTCGGTGTTG 59.937 52.381 0.00 0.00 0.00 3.33
630 631 1.088306 GGTTTGTGTGTCGGTGTTGA 58.912 50.000 0.00 0.00 0.00 3.18
631 632 1.469308 GGTTTGTGTGTCGGTGTTGAA 59.531 47.619 0.00 0.00 0.00 2.69
632 633 2.477189 GGTTTGTGTGTCGGTGTTGAAG 60.477 50.000 0.00 0.00 0.00 3.02
633 634 2.388310 TTGTGTGTCGGTGTTGAAGA 57.612 45.000 0.00 0.00 0.00 2.87
634 635 2.613026 TGTGTGTCGGTGTTGAAGAT 57.387 45.000 0.00 0.00 0.00 2.40
635 636 2.209273 TGTGTGTCGGTGTTGAAGATG 58.791 47.619 0.00 0.00 0.00 2.90
636 637 2.210116 GTGTGTCGGTGTTGAAGATGT 58.790 47.619 0.00 0.00 0.00 3.06
637 638 2.221055 GTGTGTCGGTGTTGAAGATGTC 59.779 50.000 0.00 0.00 0.00 3.06
638 639 1.798813 GTGTCGGTGTTGAAGATGTCC 59.201 52.381 0.00 0.00 0.00 4.02
639 640 1.068474 GTCGGTGTTGAAGATGTCCG 58.932 55.000 0.00 0.00 39.40 4.79
640 641 0.037697 TCGGTGTTGAAGATGTCCGG 60.038 55.000 0.00 0.00 38.70 5.14
747 753 2.163815 GGATAGGCGTACGTGCATCTAT 59.836 50.000 17.90 14.73 36.28 1.98
845 865 2.822701 GGATCCCGCACGAAACCC 60.823 66.667 0.00 0.00 0.00 4.11
886 906 4.431131 ACTTCCCCTGCCATGCGG 62.431 66.667 0.00 0.00 34.23 5.69
940 963 1.229658 CCACCACCTCCTTCCTCCT 60.230 63.158 0.00 0.00 0.00 3.69
956 979 1.303317 CCTTCCTCCCAACCAACCG 60.303 63.158 0.00 0.00 0.00 4.44
1030 1053 1.063114 TCTACTACTTCCCCAGCTCCC 60.063 57.143 0.00 0.00 0.00 4.30
1262 1286 4.043200 GCGCTGGGGTTTGACTGC 62.043 66.667 0.00 0.00 0.00 4.40
1463 1487 2.105128 CTGGGCTCGGTAGAAGCG 59.895 66.667 0.00 0.00 40.97 4.68
1469 1493 0.872021 GCTCGGTAGAAGCGTCCATG 60.872 60.000 0.00 0.00 40.41 3.66
1486 1518 2.889045 CCATGGATCAAATGGCCTACTG 59.111 50.000 5.56 0.00 38.32 2.74
1494 1526 0.108138 AATGGCCTACTGTGCTCGAC 60.108 55.000 3.32 0.00 0.00 4.20
1495 1527 1.257750 ATGGCCTACTGTGCTCGACA 61.258 55.000 3.32 0.00 0.00 4.35
1503 1537 2.179517 GTGCTCGACACTCCTCCG 59.820 66.667 9.86 0.00 46.41 4.63
1512 1546 2.484651 CGACACTCCTCCGTCCATATAG 59.515 54.545 0.00 0.00 0.00 1.31
1513 1547 2.820787 GACACTCCTCCGTCCATATAGG 59.179 54.545 0.00 0.00 39.47 2.57
1580 1614 3.664320 TGAGGGAGCTGGTTATATTCCA 58.336 45.455 0.00 0.54 0.00 3.53
1863 1899 4.652421 AGTAACTGTACCACCAGAGTTGAA 59.348 41.667 4.70 0.00 34.24 2.69
1864 1900 3.753294 ACTGTACCACCAGAGTTGAAG 57.247 47.619 0.00 0.00 36.30 3.02
1952 1988 1.136252 CACTCAACGAACATGCCGAAG 60.136 52.381 13.95 10.22 0.00 3.79
2021 2057 8.373256 CCGTATTATTCGCATTATTCTACACTG 58.627 37.037 0.00 0.00 0.00 3.66
2180 2286 9.764870 CAAAAGAATACATACATGTCACTTCAG 57.235 33.333 0.00 0.00 41.97 3.02
2208 2320 6.869315 TCCACGAGTTCAATTGAAAATACA 57.131 33.333 22.07 0.00 35.58 2.29
2264 2376 7.262772 CACATAATTTCTCAGCAACAATCCAT 58.737 34.615 0.00 0.00 0.00 3.41
2270 2382 1.814394 TCAGCAACAATCCATCACTGC 59.186 47.619 0.00 0.00 0.00 4.40
2309 2421 1.453155 CTTTGATTGGACTGGACGGG 58.547 55.000 0.00 0.00 0.00 5.28
2344 2456 2.562125 GGCAAAGCCCGTGTGATTA 58.438 52.632 0.00 0.00 44.06 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.889306 AGAGTAGTGCACGGAAGGTC 59.111 55.000 12.01 4.03 0.00 3.85
1 2 1.272769 GAAGAGTAGTGCACGGAAGGT 59.727 52.381 12.01 0.00 0.00 3.50
2 3 1.404315 GGAAGAGTAGTGCACGGAAGG 60.404 57.143 12.01 0.00 0.00 3.46
3 4 1.546476 AGGAAGAGTAGTGCACGGAAG 59.454 52.381 12.01 0.00 0.00 3.46
4 5 1.629043 AGGAAGAGTAGTGCACGGAA 58.371 50.000 12.01 0.00 0.00 4.30
5 6 2.490903 GTTAGGAAGAGTAGTGCACGGA 59.509 50.000 12.01 0.00 0.00 4.69
6 7 2.492484 AGTTAGGAAGAGTAGTGCACGG 59.508 50.000 12.01 0.00 0.00 4.94
7 8 3.057456 ACAGTTAGGAAGAGTAGTGCACG 60.057 47.826 12.01 0.00 0.00 5.34
8 9 4.487019 GACAGTTAGGAAGAGTAGTGCAC 58.513 47.826 9.40 9.40 0.00 4.57
9 10 3.190744 CGACAGTTAGGAAGAGTAGTGCA 59.809 47.826 0.00 0.00 0.00 4.57
10 11 3.427773 CCGACAGTTAGGAAGAGTAGTGC 60.428 52.174 0.00 0.00 0.00 4.40
11 12 3.427773 GCCGACAGTTAGGAAGAGTAGTG 60.428 52.174 0.52 0.00 0.00 2.74
12 13 2.754002 GCCGACAGTTAGGAAGAGTAGT 59.246 50.000 0.52 0.00 0.00 2.73
13 14 2.223294 CGCCGACAGTTAGGAAGAGTAG 60.223 54.545 0.52 0.00 0.00 2.57
14 15 1.741706 CGCCGACAGTTAGGAAGAGTA 59.258 52.381 0.52 0.00 0.00 2.59
15 16 0.526662 CGCCGACAGTTAGGAAGAGT 59.473 55.000 0.52 0.00 0.00 3.24
16 17 0.809385 TCGCCGACAGTTAGGAAGAG 59.191 55.000 0.52 0.00 0.00 2.85
17 18 1.134367 CATCGCCGACAGTTAGGAAGA 59.866 52.381 0.00 0.18 0.00 2.87
18 19 1.135083 ACATCGCCGACAGTTAGGAAG 60.135 52.381 0.00 0.00 0.00 3.46
19 20 0.892755 ACATCGCCGACAGTTAGGAA 59.107 50.000 0.00 0.00 0.00 3.36
20 21 0.172578 CACATCGCCGACAGTTAGGA 59.827 55.000 0.00 0.00 0.00 2.94
21 22 1.421410 GCACATCGCCGACAGTTAGG 61.421 60.000 0.00 0.00 32.94 2.69
22 23 1.742900 CGCACATCGCCGACAGTTAG 61.743 60.000 0.00 0.00 37.30 2.34
23 24 1.803922 CGCACATCGCCGACAGTTA 60.804 57.895 0.00 0.00 37.30 2.24
24 25 3.112075 CGCACATCGCCGACAGTT 61.112 61.111 0.00 0.00 37.30 3.16
25 26 3.971453 CTCGCACATCGCCGACAGT 62.971 63.158 0.00 0.00 37.30 3.55
26 27 3.250323 CTCGCACATCGCCGACAG 61.250 66.667 0.00 0.00 37.30 3.51
29 30 4.435436 AAGCTCGCACATCGCCGA 62.435 61.111 0.00 0.00 37.30 5.54
30 31 3.918220 GAAGCTCGCACATCGCCG 61.918 66.667 0.00 0.00 37.30 6.46
31 32 3.918220 CGAAGCTCGCACATCGCC 61.918 66.667 0.00 0.00 37.30 5.54
32 33 3.181967 ACGAAGCTCGCACATCGC 61.182 61.111 3.24 0.00 45.12 4.58
33 34 2.691522 CACGAAGCTCGCACATCG 59.308 61.111 1.81 1.81 45.12 3.84
34 35 1.687494 GACCACGAAGCTCGCACATC 61.687 60.000 5.63 0.00 45.12 3.06
35 36 1.738099 GACCACGAAGCTCGCACAT 60.738 57.895 5.63 0.00 45.12 3.21
36 37 2.355837 GACCACGAAGCTCGCACA 60.356 61.111 5.63 0.00 45.12 4.57
37 38 3.470567 CGACCACGAAGCTCGCAC 61.471 66.667 5.63 0.00 45.12 5.34
38 39 3.891586 GACGACCACGAAGCTCGCA 62.892 63.158 5.63 0.00 45.12 5.10
39 40 3.173240 GACGACCACGAAGCTCGC 61.173 66.667 5.63 0.00 45.12 5.03
40 41 2.870161 CGACGACCACGAAGCTCG 60.870 66.667 0.00 4.36 46.93 5.03
41 42 2.081212 CACGACGACCACGAAGCTC 61.081 63.158 0.00 0.00 42.66 4.09
42 43 2.050351 CACGACGACCACGAAGCT 60.050 61.111 0.00 0.00 42.66 3.74
43 44 3.103911 CCACGACGACCACGAAGC 61.104 66.667 0.00 0.00 42.66 3.86
44 45 3.103911 GCCACGACGACCACGAAG 61.104 66.667 0.00 0.00 42.66 3.79
45 46 4.986587 CGCCACGACGACCACGAA 62.987 66.667 0.00 0.00 42.66 3.85
64 65 4.814294 AATCGCCGAGTCCGTGCC 62.814 66.667 0.00 0.00 0.00 5.01
65 66 2.799540 GAAATCGCCGAGTCCGTGC 61.800 63.158 0.00 0.00 0.00 5.34
66 67 2.165301 GGAAATCGCCGAGTCCGTG 61.165 63.158 4.09 0.00 0.00 4.94
67 68 2.183555 GGAAATCGCCGAGTCCGT 59.816 61.111 4.09 0.00 0.00 4.69
68 69 1.589196 GAGGAAATCGCCGAGTCCG 60.589 63.158 12.43 0.00 35.19 4.79
69 70 1.227292 GGAGGAAATCGCCGAGTCC 60.227 63.158 10.77 10.77 0.00 3.85
70 71 0.249114 GAGGAGGAAATCGCCGAGTC 60.249 60.000 0.00 0.00 40.51 3.36
71 72 1.677637 GGAGGAGGAAATCGCCGAGT 61.678 60.000 0.00 0.00 40.51 4.18
72 73 1.068250 GGAGGAGGAAATCGCCGAG 59.932 63.158 0.00 0.00 40.51 4.63
73 74 0.976073 AAGGAGGAGGAAATCGCCGA 60.976 55.000 0.00 0.00 40.51 5.54
74 75 0.811616 CAAGGAGGAGGAAATCGCCG 60.812 60.000 0.00 0.00 40.51 6.46
75 76 0.253327 ACAAGGAGGAGGAAATCGCC 59.747 55.000 0.00 0.00 35.38 5.54
76 77 1.657822 GACAAGGAGGAGGAAATCGC 58.342 55.000 0.00 0.00 0.00 4.58
77 78 1.204941 ACGACAAGGAGGAGGAAATCG 59.795 52.381 0.00 0.00 0.00 3.34
78 79 2.735762 CGACGACAAGGAGGAGGAAATC 60.736 54.545 0.00 0.00 0.00 2.17
79 80 1.204941 CGACGACAAGGAGGAGGAAAT 59.795 52.381 0.00 0.00 0.00 2.17
80 81 0.601558 CGACGACAAGGAGGAGGAAA 59.398 55.000 0.00 0.00 0.00 3.13
81 82 1.248785 CCGACGACAAGGAGGAGGAA 61.249 60.000 0.00 0.00 0.00 3.36
82 83 1.677966 CCGACGACAAGGAGGAGGA 60.678 63.158 0.00 0.00 0.00 3.71
83 84 1.935327 GACCGACGACAAGGAGGAGG 61.935 65.000 0.00 0.00 0.00 4.30
84 85 0.961358 AGACCGACGACAAGGAGGAG 60.961 60.000 0.00 0.00 0.00 3.69
85 86 0.959372 GAGACCGACGACAAGGAGGA 60.959 60.000 0.00 0.00 0.00 3.71
86 87 1.507174 GAGACCGACGACAAGGAGG 59.493 63.158 0.00 0.00 0.00 4.30
87 88 1.134901 CGAGACCGACGACAAGGAG 59.865 63.158 0.00 0.00 38.22 3.69
88 89 2.330372 CCGAGACCGACGACAAGGA 61.330 63.158 0.00 0.00 38.22 3.36
89 90 2.178521 CCGAGACCGACGACAAGG 59.821 66.667 0.00 0.00 38.22 3.61
90 91 2.504244 GCCGAGACCGACGACAAG 60.504 66.667 0.00 0.00 38.22 3.16
91 92 2.352704 TTTGCCGAGACCGACGACAA 62.353 55.000 0.00 0.00 38.22 3.18
92 93 2.847754 TTTGCCGAGACCGACGACA 61.848 57.895 0.00 0.00 38.22 4.35
93 94 2.049802 TTTGCCGAGACCGACGAC 60.050 61.111 0.00 0.00 38.22 4.34
94 95 2.049802 GTTTGCCGAGACCGACGA 60.050 61.111 0.00 0.00 38.22 4.20
95 96 2.355363 TGTTTGCCGAGACCGACG 60.355 61.111 0.00 0.00 38.22 5.12
96 97 2.315386 GGTGTTTGCCGAGACCGAC 61.315 63.158 0.00 0.00 38.22 4.79
97 98 2.029964 GGTGTTTGCCGAGACCGA 59.970 61.111 0.00 0.00 38.22 4.69
98 99 2.280524 TGGTGTTTGCCGAGACCG 60.281 61.111 0.00 0.00 0.00 4.79
99 100 2.258726 GGTGGTGTTTGCCGAGACC 61.259 63.158 0.00 0.00 0.00 3.85
100 101 1.227853 AGGTGGTGTTTGCCGAGAC 60.228 57.895 0.00 0.00 0.00 3.36
101 102 1.070786 GAGGTGGTGTTTGCCGAGA 59.929 57.895 0.00 0.00 0.00 4.04
102 103 2.317609 CGAGGTGGTGTTTGCCGAG 61.318 63.158 0.00 0.00 0.00 4.63
103 104 2.280524 CGAGGTGGTGTTTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
104 105 4.025401 GCGAGGTGGTGTTTGCCG 62.025 66.667 0.00 0.00 0.00 5.69
105 106 3.670377 GGCGAGGTGGTGTTTGCC 61.670 66.667 0.00 0.00 36.74 4.52
106 107 3.670377 GGGCGAGGTGGTGTTTGC 61.670 66.667 0.00 0.00 0.00 3.68
107 108 3.353836 CGGGCGAGGTGGTGTTTG 61.354 66.667 0.00 0.00 0.00 2.93
114 115 4.899239 GATGAGGCGGGCGAGGTG 62.899 72.222 0.00 0.00 0.00 4.00
116 117 3.798954 GAAGATGAGGCGGGCGAGG 62.799 68.421 0.00 0.00 0.00 4.63
117 118 2.279784 GAAGATGAGGCGGGCGAG 60.280 66.667 0.00 0.00 0.00 5.03
118 119 4.207281 CGAAGATGAGGCGGGCGA 62.207 66.667 0.00 0.00 0.00 5.54
120 121 4.838152 TGCGAAGATGAGGCGGGC 62.838 66.667 0.00 0.00 0.00 6.13
121 122 2.892425 GTGCGAAGATGAGGCGGG 60.892 66.667 0.00 0.00 0.00 6.13
122 123 2.169789 CAGTGCGAAGATGAGGCGG 61.170 63.158 0.00 0.00 0.00 6.13
123 124 2.806856 GCAGTGCGAAGATGAGGCG 61.807 63.158 0.00 0.00 0.00 5.52
124 125 2.467826 GGCAGTGCGAAGATGAGGC 61.468 63.158 9.45 0.00 0.00 4.70
125 126 1.078918 TGGCAGTGCGAAGATGAGG 60.079 57.895 9.45 0.00 0.00 3.86
126 127 1.703438 GCTGGCAGTGCGAAGATGAG 61.703 60.000 17.16 0.00 0.00 2.90
127 128 1.742880 GCTGGCAGTGCGAAGATGA 60.743 57.895 17.16 0.00 0.00 2.92
128 129 2.789917 GCTGGCAGTGCGAAGATG 59.210 61.111 17.16 0.67 0.00 2.90
160 161 2.203070 GATACCGGCAGCAGGTGG 60.203 66.667 26.00 8.93 42.83 4.61
161 162 2.586079 CGATACCGGCAGCAGGTG 60.586 66.667 26.00 6.81 42.83 4.00
162 163 4.530857 GCGATACCGGCAGCAGGT 62.531 66.667 21.76 21.76 45.28 4.00
184 185 2.838225 TACTGCTCCGCCTAGCCC 60.838 66.667 2.72 0.00 42.05 5.19
185 186 2.731374 CTACTGCTCCGCCTAGCC 59.269 66.667 2.72 0.00 42.05 3.93
186 187 1.182385 ATCCTACTGCTCCGCCTAGC 61.182 60.000 0.00 0.00 43.08 3.42
187 188 1.271102 GAATCCTACTGCTCCGCCTAG 59.729 57.143 0.00 0.00 0.00 3.02
188 189 1.329256 GAATCCTACTGCTCCGCCTA 58.671 55.000 0.00 0.00 0.00 3.93
189 190 1.739338 CGAATCCTACTGCTCCGCCT 61.739 60.000 0.00 0.00 0.00 5.52
190 191 1.300233 CGAATCCTACTGCTCCGCC 60.300 63.158 0.00 0.00 0.00 6.13
191 192 0.318275 CTCGAATCCTACTGCTCCGC 60.318 60.000 0.00 0.00 0.00 5.54
192 193 0.318275 GCTCGAATCCTACTGCTCCG 60.318 60.000 0.00 0.00 0.00 4.63
193 194 0.747255 TGCTCGAATCCTACTGCTCC 59.253 55.000 0.00 0.00 0.00 4.70
194 195 1.407258 ACTGCTCGAATCCTACTGCTC 59.593 52.381 0.00 0.00 0.00 4.26
195 196 1.135915 CACTGCTCGAATCCTACTGCT 59.864 52.381 0.00 0.00 0.00 4.24
196 197 1.565305 CACTGCTCGAATCCTACTGC 58.435 55.000 0.00 0.00 0.00 4.40
197 198 1.565305 GCACTGCTCGAATCCTACTG 58.435 55.000 0.00 0.00 0.00 2.74
198 199 0.461961 GGCACTGCTCGAATCCTACT 59.538 55.000 0.00 0.00 0.00 2.57
199 200 0.461961 AGGCACTGCTCGAATCCTAC 59.538 55.000 0.00 0.00 37.18 3.18
200 201 0.747255 GAGGCACTGCTCGAATCCTA 59.253 55.000 0.00 0.00 41.55 2.94
201 202 1.519719 GAGGCACTGCTCGAATCCT 59.480 57.895 0.00 0.00 41.55 3.24
202 203 1.522580 GGAGGCACTGCTCGAATCC 60.523 63.158 0.00 0.00 45.87 3.01
203 204 4.116878 GGAGGCACTGCTCGAATC 57.883 61.111 0.00 0.00 45.87 2.52
252 253 3.842923 ATCTCACCGCCGGCAGAG 61.843 66.667 28.98 27.26 31.95 3.35
253 254 4.147449 CATCTCACCGCCGGCAGA 62.147 66.667 28.98 21.78 0.00 4.26
267 268 0.179936 CCACCTCCTCCAAGAGCATC 59.820 60.000 0.00 0.00 32.17 3.91
268 269 0.548682 ACCACCTCCTCCAAGAGCAT 60.549 55.000 0.00 0.00 32.17 3.79
269 270 1.152030 ACCACCTCCTCCAAGAGCA 60.152 57.895 0.00 0.00 32.17 4.26
270 271 1.298014 CACCACCTCCTCCAAGAGC 59.702 63.158 0.00 0.00 32.17 4.09
271 272 0.838122 ACCACCACCTCCTCCAAGAG 60.838 60.000 0.00 0.00 0.00 2.85
272 273 0.401395 AACCACCACCTCCTCCAAGA 60.401 55.000 0.00 0.00 0.00 3.02
273 274 0.250901 CAACCACCACCTCCTCCAAG 60.251 60.000 0.00 0.00 0.00 3.61
274 275 0.991355 ACAACCACCACCTCCTCCAA 60.991 55.000 0.00 0.00 0.00 3.53
275 276 1.385347 ACAACCACCACCTCCTCCA 60.385 57.895 0.00 0.00 0.00 3.86
276 277 1.073199 CACAACCACCACCTCCTCC 59.927 63.158 0.00 0.00 0.00 4.30
277 278 1.073199 CCACAACCACCACCTCCTC 59.927 63.158 0.00 0.00 0.00 3.71
278 279 2.460853 CCCACAACCACCACCTCCT 61.461 63.158 0.00 0.00 0.00 3.69
279 280 2.115266 CCCACAACCACCACCTCC 59.885 66.667 0.00 0.00 0.00 4.30
280 281 1.073199 CTCCCACAACCACCACCTC 59.927 63.158 0.00 0.00 0.00 3.85
281 282 2.460853 CCTCCCACAACCACCACCT 61.461 63.158 0.00 0.00 0.00 4.00
282 283 2.115266 CCTCCCACAACCACCACC 59.885 66.667 0.00 0.00 0.00 4.61
283 284 2.597510 GCCTCCCACAACCACCAC 60.598 66.667 0.00 0.00 0.00 4.16
284 285 2.424842 GATGCCTCCCACAACCACCA 62.425 60.000 0.00 0.00 0.00 4.17
285 286 1.678970 GATGCCTCCCACAACCACC 60.679 63.158 0.00 0.00 0.00 4.61
286 287 2.040544 CGATGCCTCCCACAACCAC 61.041 63.158 0.00 0.00 0.00 4.16
287 288 2.350895 CGATGCCTCCCACAACCA 59.649 61.111 0.00 0.00 0.00 3.67
288 289 2.438434 CCGATGCCTCCCACAACC 60.438 66.667 0.00 0.00 0.00 3.77
289 290 3.134127 GCCGATGCCTCCCACAAC 61.134 66.667 0.00 0.00 0.00 3.32
305 306 4.103103 GTTTCGGGAAGCGCAGGC 62.103 66.667 11.47 0.00 40.37 4.85
306 307 2.358737 AGTTTCGGGAAGCGCAGG 60.359 61.111 11.47 0.00 0.00 4.85
307 308 2.863153 CAGTTTCGGGAAGCGCAG 59.137 61.111 11.47 0.00 0.00 5.18
308 309 3.353836 GCAGTTTCGGGAAGCGCA 61.354 61.111 11.47 0.00 0.00 6.09
309 310 3.028366 GAGCAGTTTCGGGAAGCGC 62.028 63.158 0.00 0.00 0.00 5.92
310 311 2.391389 GGAGCAGTTTCGGGAAGCG 61.391 63.158 0.00 0.00 0.00 4.68
311 312 1.003233 AGGAGCAGTTTCGGGAAGC 60.003 57.895 0.00 0.00 0.00 3.86
312 313 0.391793 GGAGGAGCAGTTTCGGGAAG 60.392 60.000 0.00 0.00 0.00 3.46
313 314 0.836400 AGGAGGAGCAGTTTCGGGAA 60.836 55.000 0.00 0.00 0.00 3.97
314 315 1.229209 AGGAGGAGCAGTTTCGGGA 60.229 57.895 0.00 0.00 0.00 5.14
315 316 1.078848 CAGGAGGAGCAGTTTCGGG 60.079 63.158 0.00 0.00 0.00 5.14
316 317 1.743252 GCAGGAGGAGCAGTTTCGG 60.743 63.158 0.00 0.00 0.00 4.30
317 318 0.739112 GAGCAGGAGGAGCAGTTTCG 60.739 60.000 0.00 0.00 0.00 3.46
318 319 0.392327 GGAGCAGGAGGAGCAGTTTC 60.392 60.000 0.00 0.00 0.00 2.78
319 320 0.839853 AGGAGCAGGAGGAGCAGTTT 60.840 55.000 0.00 0.00 0.00 2.66
320 321 1.229464 AGGAGCAGGAGGAGCAGTT 60.229 57.895 0.00 0.00 0.00 3.16
321 322 1.685421 GAGGAGCAGGAGGAGCAGT 60.685 63.158 0.00 0.00 0.00 4.40
322 323 2.433994 GGAGGAGCAGGAGGAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
323 324 2.364842 GGAGGAGCAGGAGGAGCA 60.365 66.667 0.00 0.00 0.00 4.26
324 325 3.160748 GGGAGGAGCAGGAGGAGC 61.161 72.222 0.00 0.00 0.00 4.70
325 326 2.837291 CGGGAGGAGCAGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
328 329 4.154347 GTGCGGGAGGAGCAGGAG 62.154 72.222 0.00 0.00 46.10 3.69
334 335 2.187946 GACATGGTGCGGGAGGAG 59.812 66.667 0.00 0.00 0.00 3.69
335 336 3.399181 GGACATGGTGCGGGAGGA 61.399 66.667 0.00 0.00 0.00 3.71
336 337 3.047807 ATGGACATGGTGCGGGAGG 62.048 63.158 0.00 0.00 0.00 4.30
337 338 1.820906 CATGGACATGGTGCGGGAG 60.821 63.158 4.39 0.00 35.24 4.30
338 339 1.268283 TACATGGACATGGTGCGGGA 61.268 55.000 15.94 0.00 42.91 5.14
339 340 0.393673 TTACATGGACATGGTGCGGG 60.394 55.000 15.94 0.00 42.91 6.13
340 341 1.334556 CATTACATGGACATGGTGCGG 59.665 52.381 15.94 0.00 42.91 5.69
341 342 2.761392 CATTACATGGACATGGTGCG 57.239 50.000 15.94 0.00 42.91 5.34
352 353 0.107214 AGGCCCGTGTCCATTACATG 60.107 55.000 0.00 0.00 43.61 3.21
353 354 0.180406 GAGGCCCGTGTCCATTACAT 59.820 55.000 0.00 0.00 41.10 2.29
354 355 1.600107 GAGGCCCGTGTCCATTACA 59.400 57.895 0.00 0.00 35.06 2.41
355 356 1.520787 CGAGGCCCGTGTCCATTAC 60.521 63.158 0.00 0.00 0.00 1.89
356 357 2.897207 CGAGGCCCGTGTCCATTA 59.103 61.111 0.00 0.00 0.00 1.90
357 358 4.778143 GCGAGGCCCGTGTCCATT 62.778 66.667 13.97 0.00 41.15 3.16
367 368 1.961277 CATAACCATCGGCGAGGCC 60.961 63.158 17.13 0.00 46.75 5.19
368 369 1.961277 CCATAACCATCGGCGAGGC 60.961 63.158 17.13 0.00 0.00 4.70
369 370 0.880278 CACCATAACCATCGGCGAGG 60.880 60.000 17.22 16.35 0.00 4.63
370 371 1.498865 GCACCATAACCATCGGCGAG 61.499 60.000 17.22 4.99 0.00 5.03
371 372 1.522806 GCACCATAACCATCGGCGA 60.523 57.895 13.87 13.87 0.00 5.54
372 373 1.372838 TTGCACCATAACCATCGGCG 61.373 55.000 0.00 0.00 0.00 6.46
373 374 1.032014 ATTGCACCATAACCATCGGC 58.968 50.000 0.00 0.00 0.00 5.54
374 375 1.269206 GCATTGCACCATAACCATCGG 60.269 52.381 3.15 0.00 0.00 4.18
375 376 1.404748 TGCATTGCACCATAACCATCG 59.595 47.619 7.38 0.00 31.71 3.84
401 402 3.775654 CTCCTCTGTGCCCCCGTC 61.776 72.222 0.00 0.00 0.00 4.79
404 405 3.086600 CTCCTCCTCTGTGCCCCC 61.087 72.222 0.00 0.00 0.00 5.40
405 406 3.086600 CCTCCTCCTCTGTGCCCC 61.087 72.222 0.00 0.00 0.00 5.80
406 407 1.613630 TTCCTCCTCCTCTGTGCCC 60.614 63.158 0.00 0.00 0.00 5.36
407 408 1.621672 CCTTCCTCCTCCTCTGTGCC 61.622 65.000 0.00 0.00 0.00 5.01
408 409 0.907230 ACCTTCCTCCTCCTCTGTGC 60.907 60.000 0.00 0.00 0.00 4.57
409 410 0.901124 CACCTTCCTCCTCCTCTGTG 59.099 60.000 0.00 0.00 0.00 3.66
410 411 0.252467 CCACCTTCCTCCTCCTCTGT 60.252 60.000 0.00 0.00 0.00 3.41
411 412 1.621672 GCCACCTTCCTCCTCCTCTG 61.622 65.000 0.00 0.00 0.00 3.35
412 413 1.306568 GCCACCTTCCTCCTCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
413 414 1.306568 AGCCACCTTCCTCCTCCTC 60.307 63.158 0.00 0.00 0.00 3.71
414 415 1.306568 GAGCCACCTTCCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
415 416 2.726351 CGAGCCACCTTCCTCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
416 417 2.726351 CCGAGCCACCTTCCTCCTC 61.726 68.421 0.00 0.00 0.00 3.71
417 418 2.685380 CCGAGCCACCTTCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
418 419 2.683933 TCCGAGCCACCTTCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
419 420 2.726351 CCTCCGAGCCACCTTCCTC 61.726 68.421 0.00 0.00 0.00 3.71
420 421 2.685380 CCTCCGAGCCACCTTCCT 60.685 66.667 0.00 0.00 0.00 3.36
421 422 2.683933 TCCTCCGAGCCACCTTCC 60.684 66.667 0.00 0.00 0.00 3.46
422 423 2.726351 CCTCCTCCGAGCCACCTTC 61.726 68.421 0.00 0.00 34.49 3.46
423 424 2.685380 CCTCCTCCGAGCCACCTT 60.685 66.667 0.00 0.00 34.49 3.50
424 425 3.670629 CTCCTCCTCCGAGCCACCT 62.671 68.421 0.00 0.00 34.49 4.00
425 426 3.151022 CTCCTCCTCCGAGCCACC 61.151 72.222 0.00 0.00 34.49 4.61
426 427 2.937959 ATCCTCCTCCTCCGAGCCAC 62.938 65.000 0.00 0.00 34.49 5.01
427 428 1.361176 TATCCTCCTCCTCCGAGCCA 61.361 60.000 0.00 0.00 34.49 4.75
428 429 0.610785 CTATCCTCCTCCTCCGAGCC 60.611 65.000 0.00 0.00 34.49 4.70
429 430 0.111639 ACTATCCTCCTCCTCCGAGC 59.888 60.000 0.00 0.00 34.49 5.03
430 431 1.546773 CCACTATCCTCCTCCTCCGAG 60.547 61.905 0.00 0.00 35.72 4.63
431 432 0.478942 CCACTATCCTCCTCCTCCGA 59.521 60.000 0.00 0.00 0.00 4.55
432 433 1.182385 GCCACTATCCTCCTCCTCCG 61.182 65.000 0.00 0.00 0.00 4.63
433 434 1.182385 CGCCACTATCCTCCTCCTCC 61.182 65.000 0.00 0.00 0.00 4.30
434 435 0.468400 ACGCCACTATCCTCCTCCTC 60.468 60.000 0.00 0.00 0.00 3.71
435 436 0.468400 GACGCCACTATCCTCCTCCT 60.468 60.000 0.00 0.00 0.00 3.69
436 437 1.797211 CGACGCCACTATCCTCCTCC 61.797 65.000 0.00 0.00 0.00 4.30
437 438 1.102222 ACGACGCCACTATCCTCCTC 61.102 60.000 0.00 0.00 0.00 3.71
438 439 0.683504 AACGACGCCACTATCCTCCT 60.684 55.000 0.00 0.00 0.00 3.69
439 440 0.175073 AAACGACGCCACTATCCTCC 59.825 55.000 0.00 0.00 0.00 4.30
440 441 1.135199 TGAAACGACGCCACTATCCTC 60.135 52.381 0.00 0.00 0.00 3.71
441 442 0.892755 TGAAACGACGCCACTATCCT 59.107 50.000 0.00 0.00 0.00 3.24
442 443 1.859080 GATGAAACGACGCCACTATCC 59.141 52.381 0.00 0.00 0.00 2.59
443 444 1.517276 CGATGAAACGACGCCACTATC 59.483 52.381 0.00 0.00 35.09 2.08
444 445 1.135199 ACGATGAAACGACGCCACTAT 60.135 47.619 0.00 0.00 37.03 2.12
445 446 0.241749 ACGATGAAACGACGCCACTA 59.758 50.000 0.00 0.00 37.03 2.74
446 447 1.006571 ACGATGAAACGACGCCACT 60.007 52.632 0.00 0.00 37.03 4.00
447 448 1.414897 GACGATGAAACGACGCCAC 59.585 57.895 0.00 0.00 37.03 5.01
448 449 2.084101 CGACGATGAAACGACGCCA 61.084 57.895 0.00 0.00 42.58 5.69
449 450 2.687436 CGACGATGAAACGACGCC 59.313 61.111 0.00 0.00 42.58 5.68
450 451 1.339235 TTCCGACGATGAAACGACGC 61.339 55.000 0.00 0.00 45.74 5.19
451 452 0.633733 CTTCCGACGATGAAACGACG 59.366 55.000 0.00 0.00 46.34 5.12
452 453 1.385743 CACTTCCGACGATGAAACGAC 59.614 52.381 0.00 0.00 37.03 4.34
453 454 1.001048 ACACTTCCGACGATGAAACGA 60.001 47.619 0.00 0.00 37.03 3.85
454 455 1.385743 GACACTTCCGACGATGAAACG 59.614 52.381 0.00 0.00 39.31 3.60
455 456 1.725164 GGACACTTCCGACGATGAAAC 59.275 52.381 0.00 0.00 29.98 2.78
456 457 2.074547 GGACACTTCCGACGATGAAA 57.925 50.000 0.00 0.00 29.98 2.69
457 458 3.806591 GGACACTTCCGACGATGAA 57.193 52.632 0.00 0.00 29.98 2.57
466 467 1.340114 GGACCAATGGAGGACACTTCC 60.340 57.143 6.16 0.00 43.22 3.46
467 468 1.676014 CGGACCAATGGAGGACACTTC 60.676 57.143 6.16 0.00 0.00 3.01
468 469 0.324943 CGGACCAATGGAGGACACTT 59.675 55.000 6.16 0.00 0.00 3.16
469 470 0.836400 ACGGACCAATGGAGGACACT 60.836 55.000 6.16 0.00 0.00 3.55
470 471 0.899720 TACGGACCAATGGAGGACAC 59.100 55.000 6.16 0.00 0.00 3.67
471 472 1.646912 TTACGGACCAATGGAGGACA 58.353 50.000 6.16 0.00 0.00 4.02
472 473 2.629051 CTTTACGGACCAATGGAGGAC 58.371 52.381 6.16 0.00 0.00 3.85
473 474 1.065709 GCTTTACGGACCAATGGAGGA 60.066 52.381 6.16 0.00 0.00 3.71
474 475 1.379527 GCTTTACGGACCAATGGAGG 58.620 55.000 6.16 0.00 0.00 4.30
475 476 1.379527 GGCTTTACGGACCAATGGAG 58.620 55.000 6.16 0.00 0.00 3.86
476 477 0.034863 GGGCTTTACGGACCAATGGA 60.035 55.000 6.16 0.00 33.76 3.41
477 478 1.035385 GGGGCTTTACGGACCAATGG 61.035 60.000 0.00 0.00 35.71 3.16
478 479 1.035385 GGGGGCTTTACGGACCAATG 61.035 60.000 0.00 0.00 35.71 2.82
479 480 1.305287 GGGGGCTTTACGGACCAAT 59.695 57.895 0.00 0.00 35.71 3.16
480 481 1.502527 ATGGGGGCTTTACGGACCAA 61.503 55.000 0.00 0.00 35.71 3.67
481 482 0.620990 TATGGGGGCTTTACGGACCA 60.621 55.000 0.00 0.00 35.71 4.02
482 483 0.769247 ATATGGGGGCTTTACGGACC 59.231 55.000 0.00 0.00 0.00 4.46
483 484 2.621526 CAAATATGGGGGCTTTACGGAC 59.378 50.000 0.00 0.00 0.00 4.79
484 485 2.242708 ACAAATATGGGGGCTTTACGGA 59.757 45.455 0.00 0.00 0.00 4.69
485 486 2.621526 GACAAATATGGGGGCTTTACGG 59.378 50.000 0.00 0.00 0.00 4.02
486 487 3.551846 AGACAAATATGGGGGCTTTACG 58.448 45.455 0.00 0.00 0.00 3.18
487 488 3.889538 GGAGACAAATATGGGGGCTTTAC 59.110 47.826 0.00 0.00 0.00 2.01
488 489 3.434453 CGGAGACAAATATGGGGGCTTTA 60.434 47.826 0.00 0.00 0.00 1.85
489 490 2.686715 CGGAGACAAATATGGGGGCTTT 60.687 50.000 0.00 0.00 0.00 3.51
490 491 1.133792 CGGAGACAAATATGGGGGCTT 60.134 52.381 0.00 0.00 0.00 4.35
491 492 0.474184 CGGAGACAAATATGGGGGCT 59.526 55.000 0.00 0.00 0.00 5.19
492 493 1.172812 GCGGAGACAAATATGGGGGC 61.173 60.000 0.00 0.00 0.00 5.80
493 494 0.474184 AGCGGAGACAAATATGGGGG 59.526 55.000 0.00 0.00 0.00 5.40
494 495 1.949525 CAAGCGGAGACAAATATGGGG 59.050 52.381 0.00 0.00 0.00 4.96
495 496 2.355756 CACAAGCGGAGACAAATATGGG 59.644 50.000 0.00 0.00 0.00 4.00
496 497 2.355756 CCACAAGCGGAGACAAATATGG 59.644 50.000 0.00 0.00 0.00 2.74
497 498 2.355756 CCCACAAGCGGAGACAAATATG 59.644 50.000 0.00 0.00 0.00 1.78
498 499 2.238646 TCCCACAAGCGGAGACAAATAT 59.761 45.455 0.00 0.00 0.00 1.28
499 500 1.626321 TCCCACAAGCGGAGACAAATA 59.374 47.619 0.00 0.00 0.00 1.40
500 501 0.400213 TCCCACAAGCGGAGACAAAT 59.600 50.000 0.00 0.00 0.00 2.32
501 502 1.833606 TCCCACAAGCGGAGACAAA 59.166 52.632 0.00 0.00 0.00 2.83
502 503 3.557220 TCCCACAAGCGGAGACAA 58.443 55.556 0.00 0.00 0.00 3.18
507 508 0.391130 CGATTTCTCCCACAAGCGGA 60.391 55.000 0.00 0.00 0.00 5.54
508 509 1.982073 GCGATTTCTCCCACAAGCGG 61.982 60.000 0.00 0.00 32.50 5.52
509 510 1.425428 GCGATTTCTCCCACAAGCG 59.575 57.895 0.00 0.00 34.94 4.68
510 511 1.298859 ACGCGATTTCTCCCACAAGC 61.299 55.000 15.93 0.00 0.00 4.01
511 512 1.128692 GAACGCGATTTCTCCCACAAG 59.871 52.381 15.93 0.00 0.00 3.16
512 513 1.153353 GAACGCGATTTCTCCCACAA 58.847 50.000 15.93 0.00 0.00 3.33
513 514 1.011968 CGAACGCGATTTCTCCCACA 61.012 55.000 15.93 0.00 40.82 4.17
514 515 1.693083 CCGAACGCGATTTCTCCCAC 61.693 60.000 15.93 0.00 40.82 4.61
515 516 1.447140 CCGAACGCGATTTCTCCCA 60.447 57.895 15.93 0.00 40.82 4.37
516 517 1.153706 TCCGAACGCGATTTCTCCC 60.154 57.895 15.93 0.00 40.82 4.30
517 518 1.419107 GGTCCGAACGCGATTTCTCC 61.419 60.000 15.93 4.64 40.82 3.71
518 519 1.740043 CGGTCCGAACGCGATTTCTC 61.740 60.000 15.93 0.00 40.82 2.87
519 520 1.804326 CGGTCCGAACGCGATTTCT 60.804 57.895 15.93 0.00 40.82 2.52
520 521 2.693285 CGGTCCGAACGCGATTTC 59.307 61.111 15.93 6.20 40.82 2.17
537 538 0.592148 CTAGTATCGGTCCGTGGAGC 59.408 60.000 11.88 8.03 39.05 4.70
538 539 0.592148 GCTAGTATCGGTCCGTGGAG 59.408 60.000 11.88 4.34 0.00 3.86
539 540 0.820891 GGCTAGTATCGGTCCGTGGA 60.821 60.000 11.88 0.00 0.00 4.02
540 541 1.658673 GGCTAGTATCGGTCCGTGG 59.341 63.158 11.88 0.00 0.00 4.94
541 542 1.658673 GGGCTAGTATCGGTCCGTG 59.341 63.158 11.88 0.00 0.00 4.94
542 543 1.895707 CGGGCTAGTATCGGTCCGT 60.896 63.158 11.88 1.23 44.47 4.69
543 544 2.952245 CGGGCTAGTATCGGTCCG 59.048 66.667 4.39 4.39 44.13 4.79
544 545 2.649614 GCGGGCTAGTATCGGTCC 59.350 66.667 0.00 0.00 0.00 4.46
545 546 1.461911 AAGGCGGGCTAGTATCGGTC 61.462 60.000 3.84 0.00 0.00 4.79
546 547 1.457079 AAGGCGGGCTAGTATCGGT 60.457 57.895 3.84 0.00 0.00 4.69
547 548 1.006102 CAAGGCGGGCTAGTATCGG 60.006 63.158 3.84 0.00 0.00 4.18
548 549 1.006102 CCAAGGCGGGCTAGTATCG 60.006 63.158 3.84 0.00 0.00 2.92
549 550 0.977395 ATCCAAGGCGGGCTAGTATC 59.023 55.000 3.84 0.00 34.36 2.24
550 551 0.687354 CATCCAAGGCGGGCTAGTAT 59.313 55.000 3.84 0.00 34.36 2.12
551 552 1.407656 CCATCCAAGGCGGGCTAGTA 61.408 60.000 3.84 0.00 34.36 1.82
552 553 2.746375 CCATCCAAGGCGGGCTAGT 61.746 63.158 3.84 0.00 34.36 2.57
553 554 2.111878 CCATCCAAGGCGGGCTAG 59.888 66.667 3.84 0.00 34.36 3.42
554 555 4.189580 GCCATCCAAGGCGGGCTA 62.190 66.667 3.84 0.00 46.12 3.93
578 579 2.734591 GACCGTGCTGTCCTGACA 59.265 61.111 0.00 0.00 39.32 3.58
593 594 3.948086 CTCTCACACGCGTCCGGAC 62.948 68.421 25.28 25.28 39.22 4.79
594 595 3.733960 CTCTCACACGCGTCCGGA 61.734 66.667 9.86 0.00 39.22 5.14
595 596 4.778415 CCTCTCACACGCGTCCGG 62.778 72.222 9.86 0.00 39.22 5.14
596 597 3.553437 AACCTCTCACACGCGTCCG 62.553 63.158 9.86 2.74 41.14 4.79
597 598 1.300697 AAACCTCTCACACGCGTCC 60.301 57.895 9.86 0.00 0.00 4.79
598 599 0.874607 ACAAACCTCTCACACGCGTC 60.875 55.000 9.86 0.00 0.00 5.19
599 600 1.143183 ACAAACCTCTCACACGCGT 59.857 52.632 5.58 5.58 0.00 6.01
600 601 1.151777 ACACAAACCTCTCACACGCG 61.152 55.000 3.53 3.53 0.00 6.01
601 602 0.304705 CACACAAACCTCTCACACGC 59.695 55.000 0.00 0.00 0.00 5.34
602 603 1.593006 GACACACAAACCTCTCACACG 59.407 52.381 0.00 0.00 0.00 4.49
603 604 1.593006 CGACACACAAACCTCTCACAC 59.407 52.381 0.00 0.00 0.00 3.82
604 605 1.472552 CCGACACACAAACCTCTCACA 60.473 52.381 0.00 0.00 0.00 3.58
605 606 1.217882 CCGACACACAAACCTCTCAC 58.782 55.000 0.00 0.00 0.00 3.51
606 607 0.828022 ACCGACACACAAACCTCTCA 59.172 50.000 0.00 0.00 0.00 3.27
607 608 1.217882 CACCGACACACAAACCTCTC 58.782 55.000 0.00 0.00 0.00 3.20
608 609 0.539986 ACACCGACACACAAACCTCT 59.460 50.000 0.00 0.00 0.00 3.69
609 610 1.063469 CAACACCGACACACAAACCTC 59.937 52.381 0.00 0.00 0.00 3.85
610 611 1.091537 CAACACCGACACACAAACCT 58.908 50.000 0.00 0.00 0.00 3.50
611 612 1.088306 TCAACACCGACACACAAACC 58.912 50.000 0.00 0.00 0.00 3.27
612 613 2.417239 TCTTCAACACCGACACACAAAC 59.583 45.455 0.00 0.00 0.00 2.93
613 614 2.701107 TCTTCAACACCGACACACAAA 58.299 42.857 0.00 0.00 0.00 2.83
614 615 2.388310 TCTTCAACACCGACACACAA 57.612 45.000 0.00 0.00 0.00 3.33
615 616 2.209273 CATCTTCAACACCGACACACA 58.791 47.619 0.00 0.00 0.00 3.72
616 617 2.210116 ACATCTTCAACACCGACACAC 58.790 47.619 0.00 0.00 0.00 3.82
617 618 2.479837 GACATCTTCAACACCGACACA 58.520 47.619 0.00 0.00 0.00 3.72
618 619 1.798813 GGACATCTTCAACACCGACAC 59.201 52.381 0.00 0.00 0.00 3.67
619 620 1.604438 CGGACATCTTCAACACCGACA 60.604 52.381 0.00 0.00 42.40 4.35
620 621 1.068474 CGGACATCTTCAACACCGAC 58.932 55.000 0.00 0.00 42.40 4.79
621 622 0.037697 CCGGACATCTTCAACACCGA 60.038 55.000 0.00 0.00 42.40 4.69
622 623 0.037697 TCCGGACATCTTCAACACCG 60.038 55.000 0.00 0.00 40.03 4.94
623 624 2.009774 CATCCGGACATCTTCAACACC 58.990 52.381 6.12 0.00 0.00 4.16
624 625 2.972625 TCATCCGGACATCTTCAACAC 58.027 47.619 6.12 0.00 0.00 3.32
625 626 3.912496 ATCATCCGGACATCTTCAACA 57.088 42.857 6.12 0.00 0.00 3.33
626 627 4.635765 TGAAATCATCCGGACATCTTCAAC 59.364 41.667 6.12 0.00 0.00 3.18
627 628 4.842574 TGAAATCATCCGGACATCTTCAA 58.157 39.130 6.12 0.00 0.00 2.69
628 629 4.486125 TGAAATCATCCGGACATCTTCA 57.514 40.909 6.12 11.46 0.00 3.02
629 630 4.320057 GCATGAAATCATCCGGACATCTTC 60.320 45.833 6.12 8.76 33.61 2.87
630 631 3.567164 GCATGAAATCATCCGGACATCTT 59.433 43.478 6.12 0.00 33.61 2.40
631 632 3.144506 GCATGAAATCATCCGGACATCT 58.855 45.455 6.12 0.00 33.61 2.90
632 633 3.144506 AGCATGAAATCATCCGGACATC 58.855 45.455 6.12 1.20 33.61 3.06
633 634 3.219176 AGCATGAAATCATCCGGACAT 57.781 42.857 6.12 0.74 33.61 3.06
634 635 2.715749 AGCATGAAATCATCCGGACA 57.284 45.000 6.12 0.00 33.61 4.02
635 636 4.376340 AAAAGCATGAAATCATCCGGAC 57.624 40.909 6.12 0.00 33.61 4.79
636 637 5.593909 ACATAAAAGCATGAAATCATCCGGA 59.406 36.000 6.61 6.61 33.61 5.14
637 638 5.835257 ACATAAAAGCATGAAATCATCCGG 58.165 37.500 0.00 0.00 33.61 5.14
638 639 7.760131 AAACATAAAAGCATGAAATCATCCG 57.240 32.000 0.00 0.00 33.61 4.18
639 640 9.977762 GAAAAACATAAAAGCATGAAATCATCC 57.022 29.630 0.00 0.00 33.61 3.51
703 709 2.453521 TGGCGGAGACACTACATTACT 58.546 47.619 0.00 0.00 34.89 2.24
747 753 7.428282 TCTTTCTTTGCGTATATCAAACACA 57.572 32.000 0.66 0.00 31.05 3.72
845 865 1.407258 TGCTTTTCGTTTTGGACCCTG 59.593 47.619 0.00 0.00 0.00 4.45
886 906 1.504647 GAGCGCGGGTTATAAAGGGC 61.505 60.000 8.83 14.05 41.89 5.19
940 963 1.758592 CTCGGTTGGTTGGGAGGAA 59.241 57.895 0.00 0.00 0.00 3.36
956 979 0.905357 TAGCTCCCTCCTTGTTGCTC 59.095 55.000 0.00 0.00 32.72 4.26
995 1018 5.590818 AGTAGTAGAAGTCCTCCATTTCCA 58.409 41.667 0.00 0.00 0.00 3.53
1030 1053 3.008375 TGGACAATTTCAGAGGTCTCCAG 59.992 47.826 0.00 0.00 0.00 3.86
1152 1175 2.506438 GCGTCGAGGTAGTGGTGC 60.506 66.667 7.01 0.00 0.00 5.01
1250 1274 1.303317 ACCATCGCAGTCAAACCCC 60.303 57.895 0.00 0.00 0.00 4.95
1262 1286 1.202020 CGTTTACACATGCCACCATCG 60.202 52.381 0.00 0.00 0.00 3.84
1469 1493 1.678101 GCACAGTAGGCCATTTGATCC 59.322 52.381 5.01 0.00 0.00 3.36
1494 1526 1.546476 GCCTATATGGACGGAGGAGTG 59.454 57.143 0.00 0.00 38.35 3.51
1495 1527 1.429687 AGCCTATATGGACGGAGGAGT 59.570 52.381 0.00 0.00 38.35 3.85
1498 1530 2.232452 CTGAAGCCTATATGGACGGAGG 59.768 54.545 0.00 0.00 38.35 4.30
1503 1537 4.999950 CACAATCCTGAAGCCTATATGGAC 59.000 45.833 0.00 0.00 38.35 4.02
1512 1546 2.134789 ACATCCACAATCCTGAAGCC 57.865 50.000 0.00 0.00 0.00 4.35
1513 1547 3.004106 GCATACATCCACAATCCTGAAGC 59.996 47.826 0.00 0.00 0.00 3.86
1580 1614 6.064717 GCCTCCAAGAACTGTATTCCAATAT 58.935 40.000 0.00 0.00 0.00 1.28
1792 1826 1.155889 GTCATGCATGTGACACGGAA 58.844 50.000 25.43 0.46 46.04 4.30
1811 1845 3.611766 ACCTGTCTCCCTGTAAATTCG 57.388 47.619 0.00 0.00 0.00 3.34
1863 1899 6.068853 TGAGAGGGAATAATGGTTGGATTTCT 60.069 38.462 0.00 0.00 0.00 2.52
1864 1900 6.129179 TGAGAGGGAATAATGGTTGGATTTC 58.871 40.000 0.00 0.00 0.00 2.17
2021 2057 9.084164 GTGGACATGAATCATACGGTTATATAC 57.916 37.037 0.00 0.00 0.00 1.47
2080 2179 3.051327 CAACACTGCAATGATTCGCAAA 58.949 40.909 0.26 0.00 37.76 3.68
2208 2320 4.452795 CACTCGTCTGTATCCTGATACGAT 59.547 45.833 11.55 0.00 44.97 3.73
2253 2365 0.804364 TCGCAGTGATGGATTGTTGC 59.196 50.000 0.00 0.00 0.00 4.17
2264 2376 4.065088 ACTTTTCAGCTAAATCGCAGTGA 58.935 39.130 0.00 0.00 0.00 3.41
2270 2382 6.148811 TCAAAGGGTACTTTTCAGCTAAATCG 59.851 38.462 0.00 0.00 44.26 3.34
2309 2421 1.025113 GCCCCGGTCTTGCTTCTAAC 61.025 60.000 0.00 0.00 0.00 2.34
2344 2456 2.203728 TGGTGTGCCCTCCGTACT 60.204 61.111 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.