Multiple sequence alignment - TraesCS6A01G259200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G259200 chr6A 100.000 2462 0 0 1 2462 482081032 482078571 0.000000e+00 4547.0
1 TraesCS6A01G259200 chr6A 82.967 182 25 4 2286 2462 114330668 114330848 2.530000e-35 159.0
2 TraesCS6A01G259200 chr6D 89.672 1617 67 42 402 1972 342000175 341998613 0.000000e+00 1969.0
3 TraesCS6A01G259200 chr6D 88.858 359 26 7 2110 2462 341998551 341998201 1.750000e-116 429.0
4 TraesCS6A01G259200 chr6D 91.304 69 6 0 1 69 342019459 342019391 7.250000e-16 95.3
5 TraesCS6A01G259200 chr6B 88.035 1588 117 40 912 2462 516476840 516475289 0.000000e+00 1812.0
6 TraesCS6A01G259200 chr6B 79.487 429 35 21 522 913 516478362 516477950 3.140000e-64 255.0
7 TraesCS6A01G259200 chr3A 88.830 188 16 5 63 246 84273428 84273242 2.460000e-55 226.0
8 TraesCS6A01G259200 chr4A 88.360 189 17 5 61 245 634457246 634457059 3.190000e-54 222.0
9 TraesCS6A01G259200 chr4A 86.772 189 20 5 61 245 634425242 634425055 3.210000e-49 206.0
10 TraesCS6A01G259200 chr7D 87.912 182 17 5 69 246 53412407 53412227 2.480000e-50 209.0
11 TraesCS6A01G259200 chr7D 84.153 183 21 7 2286 2462 381351455 381351275 1.170000e-38 171.0
12 TraesCS6A01G259200 chr7D 84.153 183 21 7 2286 2462 381352192 381352012 1.170000e-38 171.0
13 TraesCS6A01G259200 chr1D 85.938 192 21 6 59 246 149049622 149049811 1.490000e-47 200.0
14 TraesCS6A01G259200 chr5B 86.517 178 21 3 63 237 222408764 222408941 2.500000e-45 193.0
15 TraesCS6A01G259200 chr5B 86.441 177 20 4 69 242 234308736 234308561 8.990000e-45 191.0
16 TraesCS6A01G259200 chr1A 85.638 188 21 5 62 246 127645604 127645420 2.500000e-45 193.0
17 TraesCS6A01G259200 chr5A 84.817 191 26 3 58 245 663228905 663229095 3.230000e-44 189.0
18 TraesCS6A01G259200 chr3D 86.207 174 16 8 2293 2459 606343635 606343807 5.410000e-42 182.0
19 TraesCS6A01G259200 chr3B 85.143 175 20 6 2293 2462 815525811 815525638 9.050000e-40 174.0
20 TraesCS6A01G259200 chr3B 85.143 175 20 6 2293 2462 815606171 815605998 9.050000e-40 174.0
21 TraesCS6A01G259200 chr3B 85.143 175 20 6 2293 2462 815654882 815654709 9.050000e-40 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G259200 chr6A 482078571 482081032 2461 True 4547.0 4547 100.000 1 2462 1 chr6A.!!$R1 2461
1 TraesCS6A01G259200 chr6D 341998201 342000175 1974 True 1199.0 1969 89.265 402 2462 2 chr6D.!!$R2 2060
2 TraesCS6A01G259200 chr6B 516475289 516478362 3073 True 1033.5 1812 83.761 522 2462 2 chr6B.!!$R1 1940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 501 0.028902 GTCAACGTCGCAGGCTTTTT 59.971 50.0 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 3587 0.106335 TCCCGCGTCACAAGGTTTTA 59.894 50.0 4.92 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.899239 CGCGGAGGGAGACATGCC 62.899 72.222 0.00 0.00 46.37 4.40
22 23 3.785859 GCGGAGGGAGACATGCCA 61.786 66.667 0.00 0.00 40.01 4.92
23 24 2.187946 CGGAGGGAGACATGCCAC 59.812 66.667 0.00 0.00 40.01 5.01
24 25 2.187946 GGAGGGAGACATGCCACG 59.812 66.667 0.00 0.00 40.01 4.94
25 26 2.359169 GGAGGGAGACATGCCACGA 61.359 63.158 0.00 0.00 40.01 4.35
26 27 1.142748 GAGGGAGACATGCCACGAG 59.857 63.158 0.00 0.00 40.01 4.18
27 28 1.305297 AGGGAGACATGCCACGAGA 60.305 57.895 0.00 0.00 40.01 4.04
28 29 1.142748 GGGAGACATGCCACGAGAG 59.857 63.158 0.00 0.00 36.78 3.20
29 30 1.323271 GGGAGACATGCCACGAGAGA 61.323 60.000 0.00 0.00 36.78 3.10
30 31 0.532573 GGAGACATGCCACGAGAGAA 59.467 55.000 0.00 0.00 0.00 2.87
31 32 1.066858 GGAGACATGCCACGAGAGAAA 60.067 52.381 0.00 0.00 0.00 2.52
32 33 2.419297 GGAGACATGCCACGAGAGAAAT 60.419 50.000 0.00 0.00 0.00 2.17
33 34 2.606725 GAGACATGCCACGAGAGAAATG 59.393 50.000 0.00 0.00 0.00 2.32
34 35 2.027745 AGACATGCCACGAGAGAAATGT 60.028 45.455 0.00 0.00 0.00 2.71
35 36 2.079158 ACATGCCACGAGAGAAATGTG 58.921 47.619 0.00 0.00 0.00 3.21
36 37 1.089920 ATGCCACGAGAGAAATGTGC 58.910 50.000 0.00 0.00 32.32 4.57
37 38 1.291184 TGCCACGAGAGAAATGTGCG 61.291 55.000 0.00 0.00 32.32 5.34
38 39 1.970917 GCCACGAGAGAAATGTGCGG 61.971 60.000 0.00 0.00 32.32 5.69
39 40 0.389817 CCACGAGAGAAATGTGCGGA 60.390 55.000 0.00 0.00 32.32 5.54
40 41 1.428448 CACGAGAGAAATGTGCGGAA 58.572 50.000 0.00 0.00 0.00 4.30
41 42 1.126846 CACGAGAGAAATGTGCGGAAC 59.873 52.381 0.00 0.00 0.00 3.62
42 43 1.000955 ACGAGAGAAATGTGCGGAACT 59.999 47.619 0.00 0.00 0.00 3.01
43 44 1.391485 CGAGAGAAATGTGCGGAACTG 59.609 52.381 0.00 0.00 0.00 3.16
44 45 2.688507 GAGAGAAATGTGCGGAACTGA 58.311 47.619 0.00 0.00 0.00 3.41
45 46 2.670414 GAGAGAAATGTGCGGAACTGAG 59.330 50.000 0.00 0.00 0.00 3.35
46 47 1.129437 GAGAAATGTGCGGAACTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
47 48 1.160137 GAAATGTGCGGAACTGAGCT 58.840 50.000 0.00 0.00 0.00 4.09
48 49 0.877071 AAATGTGCGGAACTGAGCTG 59.123 50.000 0.00 0.00 0.00 4.24
49 50 0.035317 AATGTGCGGAACTGAGCTGA 59.965 50.000 0.00 0.00 0.00 4.26
50 51 0.671781 ATGTGCGGAACTGAGCTGAC 60.672 55.000 0.00 0.00 0.00 3.51
51 52 2.049156 TGCGGAACTGAGCTGACG 60.049 61.111 0.00 0.00 0.00 4.35
52 53 2.811317 GCGGAACTGAGCTGACGG 60.811 66.667 0.00 0.00 0.00 4.79
53 54 2.811317 CGGAACTGAGCTGACGGC 60.811 66.667 0.00 0.00 42.19 5.68
62 63 4.895854 GCTGACGGCGGTTACTTA 57.104 55.556 13.24 0.00 0.00 2.24
63 64 2.662150 GCTGACGGCGGTTACTTAG 58.338 57.895 13.24 0.00 0.00 2.18
64 65 0.804933 GCTGACGGCGGTTACTTAGG 60.805 60.000 13.24 0.00 0.00 2.69
65 66 0.179119 CTGACGGCGGTTACTTAGGG 60.179 60.000 13.24 0.00 0.00 3.53
66 67 0.611618 TGACGGCGGTTACTTAGGGA 60.612 55.000 13.24 0.00 0.00 4.20
67 68 0.532115 GACGGCGGTTACTTAGGGAA 59.468 55.000 13.24 0.00 0.00 3.97
68 69 1.137675 GACGGCGGTTACTTAGGGAAT 59.862 52.381 13.24 0.00 0.00 3.01
69 70 1.134610 ACGGCGGTTACTTAGGGAATG 60.135 52.381 13.24 0.00 0.00 2.67
70 71 1.134610 CGGCGGTTACTTAGGGAATGT 60.135 52.381 0.00 0.00 0.00 2.71
71 72 2.678769 CGGCGGTTACTTAGGGAATGTT 60.679 50.000 0.00 0.00 0.00 2.71
72 73 3.349927 GGCGGTTACTTAGGGAATGTTT 58.650 45.455 0.00 0.00 0.00 2.83
73 74 3.128068 GGCGGTTACTTAGGGAATGTTTG 59.872 47.826 0.00 0.00 0.00 2.93
74 75 3.128068 GCGGTTACTTAGGGAATGTTTGG 59.872 47.826 0.00 0.00 0.00 3.28
75 76 4.329392 CGGTTACTTAGGGAATGTTTGGT 58.671 43.478 0.00 0.00 0.00 3.67
76 77 4.763279 CGGTTACTTAGGGAATGTTTGGTT 59.237 41.667 0.00 0.00 0.00 3.67
77 78 5.106436 CGGTTACTTAGGGAATGTTTGGTTC 60.106 44.000 0.00 0.00 0.00 3.62
78 79 5.771165 GGTTACTTAGGGAATGTTTGGTTCA 59.229 40.000 0.00 0.00 0.00 3.18
79 80 6.072119 GGTTACTTAGGGAATGTTTGGTTCAG 60.072 42.308 0.00 0.00 0.00 3.02
80 81 4.407365 ACTTAGGGAATGTTTGGTTCAGG 58.593 43.478 0.00 0.00 0.00 3.86
81 82 4.141018 ACTTAGGGAATGTTTGGTTCAGGT 60.141 41.667 0.00 0.00 0.00 4.00
82 83 5.073965 ACTTAGGGAATGTTTGGTTCAGGTA 59.926 40.000 0.00 0.00 0.00 3.08
83 84 3.763057 AGGGAATGTTTGGTTCAGGTAC 58.237 45.455 0.00 0.00 0.00 3.34
84 85 3.397955 AGGGAATGTTTGGTTCAGGTACT 59.602 43.478 0.00 0.00 43.88 2.73
85 86 4.141018 AGGGAATGTTTGGTTCAGGTACTT 60.141 41.667 0.00 0.00 34.60 2.24
86 87 4.587262 GGGAATGTTTGGTTCAGGTACTTT 59.413 41.667 0.00 0.00 34.60 2.66
87 88 5.069914 GGGAATGTTTGGTTCAGGTACTTTT 59.930 40.000 0.00 0.00 34.60 2.27
88 89 6.407639 GGGAATGTTTGGTTCAGGTACTTTTT 60.408 38.462 0.00 0.00 34.60 1.94
89 90 7.201929 GGGAATGTTTGGTTCAGGTACTTTTTA 60.202 37.037 0.00 0.00 34.60 1.52
90 91 8.364894 GGAATGTTTGGTTCAGGTACTTTTTAT 58.635 33.333 0.00 0.00 34.60 1.40
91 92 9.758651 GAATGTTTGGTTCAGGTACTTTTTATT 57.241 29.630 0.00 0.00 34.60 1.40
92 93 9.758651 AATGTTTGGTTCAGGTACTTTTTATTC 57.241 29.630 0.00 0.00 34.60 1.75
93 94 8.528044 TGTTTGGTTCAGGTACTTTTTATTCT 57.472 30.769 0.00 0.00 34.60 2.40
94 95 8.973182 TGTTTGGTTCAGGTACTTTTTATTCTT 58.027 29.630 0.00 0.00 34.60 2.52
98 99 9.498176 TGGTTCAGGTACTTTTTATTCTTAGAC 57.502 33.333 0.00 0.00 34.60 2.59
99 100 9.722184 GGTTCAGGTACTTTTTATTCTTAGACT 57.278 33.333 0.00 0.00 34.60 3.24
130 131 8.966155 AAATCCCTAAAAATTCCTAGAAACCA 57.034 30.769 0.00 0.00 0.00 3.67
131 132 8.966155 AATCCCTAAAAATTCCTAGAAACCAA 57.034 30.769 0.00 0.00 0.00 3.67
132 133 8.966155 ATCCCTAAAAATTCCTAGAAACCAAA 57.034 30.769 0.00 0.00 0.00 3.28
133 134 8.185506 TCCCTAAAAATTCCTAGAAACCAAAC 57.814 34.615 0.00 0.00 0.00 2.93
134 135 7.785506 TCCCTAAAAATTCCTAGAAACCAAACA 59.214 33.333 0.00 0.00 0.00 2.83
135 136 8.088365 CCCTAAAAATTCCTAGAAACCAAACAG 58.912 37.037 0.00 0.00 0.00 3.16
136 137 8.856103 CCTAAAAATTCCTAGAAACCAAACAGA 58.144 33.333 0.00 0.00 0.00 3.41
139 140 6.901081 AATTCCTAGAAACCAAACAGAAGG 57.099 37.500 0.00 0.00 0.00 3.46
140 141 5.640158 TTCCTAGAAACCAAACAGAAGGA 57.360 39.130 0.00 0.00 0.00 3.36
141 142 5.640158 TCCTAGAAACCAAACAGAAGGAA 57.360 39.130 0.00 0.00 0.00 3.36
142 143 5.374071 TCCTAGAAACCAAACAGAAGGAAC 58.626 41.667 0.00 0.00 0.00 3.62
143 144 7.640434 ATTCCTAGAAACCAAACAGAAGGAACT 60.640 37.037 2.78 0.00 42.83 3.01
158 159 4.684484 AGGAACTTTTTCTACACGGACT 57.316 40.909 0.00 0.00 27.25 3.85
159 160 5.796424 AGGAACTTTTTCTACACGGACTA 57.204 39.130 0.00 0.00 27.25 2.59
160 161 5.780984 AGGAACTTTTTCTACACGGACTAG 58.219 41.667 0.00 0.00 27.25 2.57
161 162 5.537674 AGGAACTTTTTCTACACGGACTAGA 59.462 40.000 0.00 0.00 27.25 2.43
162 163 6.041296 AGGAACTTTTTCTACACGGACTAGAA 59.959 38.462 0.00 0.00 27.25 2.10
163 164 6.703165 GGAACTTTTTCTACACGGACTAGAAA 59.297 38.462 0.00 7.14 38.08 2.52
164 165 7.225341 GGAACTTTTTCTACACGGACTAGAAAA 59.775 37.037 15.01 15.01 43.60 2.29
168 169 7.704789 TTTTCTACACGGACTAGAAAAAGAC 57.295 36.000 15.97 0.00 42.90 3.01
169 170 6.645790 TTCTACACGGACTAGAAAAAGACT 57.354 37.500 0.00 0.00 29.10 3.24
170 171 6.251655 TCTACACGGACTAGAAAAAGACTC 57.748 41.667 0.00 0.00 0.00 3.36
171 172 6.002704 TCTACACGGACTAGAAAAAGACTCT 58.997 40.000 0.00 0.00 0.00 3.24
172 173 7.164122 TCTACACGGACTAGAAAAAGACTCTA 58.836 38.462 0.00 0.00 0.00 2.43
173 174 6.837471 ACACGGACTAGAAAAAGACTCTAT 57.163 37.500 0.00 0.00 0.00 1.98
174 175 6.854778 ACACGGACTAGAAAAAGACTCTATC 58.145 40.000 0.00 0.00 0.00 2.08
175 176 5.966503 CACGGACTAGAAAAAGACTCTATCG 59.033 44.000 0.00 0.00 0.00 2.92
176 177 5.879223 ACGGACTAGAAAAAGACTCTATCGA 59.121 40.000 0.00 0.00 0.00 3.59
177 178 6.373774 ACGGACTAGAAAAAGACTCTATCGAA 59.626 38.462 0.00 0.00 0.00 3.71
178 179 6.908284 CGGACTAGAAAAAGACTCTATCGAAG 59.092 42.308 0.00 0.00 0.00 3.79
179 180 7.201626 CGGACTAGAAAAAGACTCTATCGAAGA 60.202 40.741 0.00 0.00 45.75 2.87
219 220 9.549078 AGTTCCTGAAACTAGAAAAAGTCTTAG 57.451 33.333 0.00 0.00 46.55 2.18
220 221 8.775527 GTTCCTGAAACTAGAAAAAGTCTTAGG 58.224 37.037 0.00 0.00 37.84 2.69
221 222 8.258850 TCCTGAAACTAGAAAAAGTCTTAGGA 57.741 34.615 0.00 0.00 37.84 2.94
222 223 8.148999 TCCTGAAACTAGAAAAAGTCTTAGGAC 58.851 37.037 0.00 0.00 42.41 3.85
236 237 6.445357 GTCTTAGGACTTTTGAACCAAACA 57.555 37.500 0.00 0.00 39.24 2.83
237 238 6.263344 GTCTTAGGACTTTTGAACCAAACAC 58.737 40.000 0.00 0.00 39.24 3.32
238 239 5.358725 TCTTAGGACTTTTGAACCAAACACC 59.641 40.000 0.00 0.00 32.79 4.16
239 240 2.764010 AGGACTTTTGAACCAAACACCC 59.236 45.455 0.00 0.00 32.79 4.61
240 241 2.159014 GGACTTTTGAACCAAACACCCC 60.159 50.000 0.00 0.00 32.79 4.95
241 242 1.834896 ACTTTTGAACCAAACACCCCC 59.165 47.619 0.00 0.00 32.79 5.40
242 243 2.115427 CTTTTGAACCAAACACCCCCT 58.885 47.619 0.00 0.00 32.79 4.79
243 244 2.255770 TTTGAACCAAACACCCCCTT 57.744 45.000 0.00 0.00 0.00 3.95
244 245 3.399952 TTTGAACCAAACACCCCCTTA 57.600 42.857 0.00 0.00 0.00 2.69
245 246 2.668144 TGAACCAAACACCCCCTTAG 57.332 50.000 0.00 0.00 0.00 2.18
246 247 1.146152 TGAACCAAACACCCCCTTAGG 59.854 52.381 0.00 0.00 0.00 2.69
247 248 0.178944 AACCAAACACCCCCTTAGGC 60.179 55.000 0.00 0.00 0.00 3.93
248 249 1.365105 ACCAAACACCCCCTTAGGCA 61.365 55.000 0.00 0.00 0.00 4.75
249 250 0.611896 CCAAACACCCCCTTAGGCAG 60.612 60.000 0.00 0.00 0.00 4.85
250 251 0.404040 CAAACACCCCCTTAGGCAGA 59.596 55.000 0.00 0.00 0.00 4.26
251 252 1.005924 CAAACACCCCCTTAGGCAGAT 59.994 52.381 0.00 0.00 0.00 2.90
252 253 0.919710 AACACCCCCTTAGGCAGATC 59.080 55.000 0.00 0.00 0.00 2.75
253 254 0.253160 ACACCCCCTTAGGCAGATCA 60.253 55.000 0.00 0.00 0.00 2.92
254 255 0.181350 CACCCCCTTAGGCAGATCAC 59.819 60.000 0.00 0.00 0.00 3.06
255 256 0.988678 ACCCCCTTAGGCAGATCACC 60.989 60.000 0.00 0.00 0.00 4.02
256 257 0.988145 CCCCCTTAGGCAGATCACCA 60.988 60.000 7.47 0.00 0.00 4.17
257 258 1.143813 CCCCTTAGGCAGATCACCAT 58.856 55.000 7.47 0.00 0.00 3.55
258 259 1.072965 CCCCTTAGGCAGATCACCATC 59.927 57.143 7.47 0.00 0.00 3.51
259 260 2.053244 CCCTTAGGCAGATCACCATCT 58.947 52.381 7.47 0.00 40.32 2.90
268 269 3.540314 AGATCACCATCTGCAGAGAAC 57.460 47.619 22.96 12.10 38.03 3.01
269 270 2.170187 AGATCACCATCTGCAGAGAACC 59.830 50.000 22.96 9.77 38.03 3.62
270 271 1.649321 TCACCATCTGCAGAGAACCT 58.351 50.000 22.96 1.08 0.00 3.50
271 272 1.552337 TCACCATCTGCAGAGAACCTC 59.448 52.381 22.96 0.00 0.00 3.85
272 273 0.908198 ACCATCTGCAGAGAACCTCC 59.092 55.000 22.96 0.00 0.00 4.30
273 274 1.202330 CCATCTGCAGAGAACCTCCT 58.798 55.000 22.96 0.00 0.00 3.69
274 275 2.292521 ACCATCTGCAGAGAACCTCCTA 60.293 50.000 22.96 0.00 0.00 2.94
275 276 2.364970 CCATCTGCAGAGAACCTCCTAG 59.635 54.545 22.96 1.77 0.00 3.02
276 277 2.909504 TCTGCAGAGAACCTCCTAGT 57.090 50.000 13.74 0.00 0.00 2.57
277 278 2.451490 TCTGCAGAGAACCTCCTAGTG 58.549 52.381 13.74 0.00 0.00 2.74
278 279 2.175202 CTGCAGAGAACCTCCTAGTGT 58.825 52.381 8.42 0.00 0.00 3.55
279 280 3.010250 TCTGCAGAGAACCTCCTAGTGTA 59.990 47.826 13.74 0.00 0.00 2.90
280 281 3.764434 CTGCAGAGAACCTCCTAGTGTAA 59.236 47.826 8.42 0.00 0.00 2.41
281 282 4.157246 TGCAGAGAACCTCCTAGTGTAAA 58.843 43.478 0.00 0.00 0.00 2.01
282 283 4.591498 TGCAGAGAACCTCCTAGTGTAAAA 59.409 41.667 0.00 0.00 0.00 1.52
283 284 4.930405 GCAGAGAACCTCCTAGTGTAAAAC 59.070 45.833 0.00 0.00 0.00 2.43
284 285 5.480205 CAGAGAACCTCCTAGTGTAAAACC 58.520 45.833 0.00 0.00 0.00 3.27
285 286 4.220163 AGAGAACCTCCTAGTGTAAAACCG 59.780 45.833 0.00 0.00 0.00 4.44
286 287 3.260128 AGAACCTCCTAGTGTAAAACCGG 59.740 47.826 0.00 0.00 0.00 5.28
287 288 1.904537 ACCTCCTAGTGTAAAACCGGG 59.095 52.381 6.32 0.00 0.00 5.73
288 289 1.406477 CCTCCTAGTGTAAAACCGGGC 60.406 57.143 6.32 0.00 0.00 6.13
289 290 1.553704 CTCCTAGTGTAAAACCGGGCT 59.446 52.381 6.32 0.00 0.00 5.19
290 291 1.276989 TCCTAGTGTAAAACCGGGCTG 59.723 52.381 6.32 0.00 0.00 4.85
291 292 1.276989 CCTAGTGTAAAACCGGGCTGA 59.723 52.381 6.32 0.00 0.00 4.26
292 293 2.344025 CTAGTGTAAAACCGGGCTGAC 58.656 52.381 6.32 0.00 0.00 3.51
293 294 0.250597 AGTGTAAAACCGGGCTGACC 60.251 55.000 6.32 0.00 0.00 4.02
294 295 0.535553 GTGTAAAACCGGGCTGACCA 60.536 55.000 6.32 0.00 40.22 4.02
295 296 0.183014 TGTAAAACCGGGCTGACCAA 59.817 50.000 6.32 0.00 40.22 3.67
296 297 0.879090 GTAAAACCGGGCTGACCAAG 59.121 55.000 6.32 0.00 40.22 3.61
297 298 0.475044 TAAAACCGGGCTGACCAAGT 59.525 50.000 6.32 0.00 40.22 3.16
298 299 1.106944 AAAACCGGGCTGACCAAGTG 61.107 55.000 6.32 0.00 40.22 3.16
299 300 1.990160 AAACCGGGCTGACCAAGTGA 61.990 55.000 6.32 0.00 40.22 3.41
300 301 1.779061 AACCGGGCTGACCAAGTGAT 61.779 55.000 6.32 0.00 40.22 3.06
301 302 1.450312 CCGGGCTGACCAAGTGATC 60.450 63.158 0.00 0.00 40.22 2.92
302 303 1.450312 CGGGCTGACCAAGTGATCC 60.450 63.158 0.00 0.00 40.22 3.36
303 304 1.450312 GGGCTGACCAAGTGATCCG 60.450 63.158 0.00 0.00 39.85 4.18
304 305 2.109126 GGCTGACCAAGTGATCCGC 61.109 63.158 0.00 0.00 35.26 5.54
305 306 2.456119 GCTGACCAAGTGATCCGCG 61.456 63.158 0.00 0.00 0.00 6.46
306 307 1.079819 CTGACCAAGTGATCCGCGT 60.080 57.895 4.92 0.00 0.00 6.01
307 308 1.354337 CTGACCAAGTGATCCGCGTG 61.354 60.000 4.92 0.00 0.00 5.34
308 309 1.374252 GACCAAGTGATCCGCGTGT 60.374 57.895 4.92 0.00 0.00 4.49
309 310 0.949105 GACCAAGTGATCCGCGTGTT 60.949 55.000 4.92 0.00 0.00 3.32
310 311 0.949105 ACCAAGTGATCCGCGTGTTC 60.949 55.000 4.92 2.08 0.00 3.18
311 312 0.670546 CCAAGTGATCCGCGTGTTCT 60.671 55.000 4.92 0.00 0.00 3.01
312 313 0.439985 CAAGTGATCCGCGTGTTCTG 59.560 55.000 4.92 0.00 0.00 3.02
313 314 0.670546 AAGTGATCCGCGTGTTCTGG 60.671 55.000 4.92 0.00 0.00 3.86
314 315 2.434185 TGATCCGCGTGTTCTGGC 60.434 61.111 4.92 0.00 0.00 4.85
321 322 3.036084 CGTGTTCTGGCGCGACTT 61.036 61.111 15.80 0.00 44.10 3.01
322 323 2.551270 GTGTTCTGGCGCGACTTG 59.449 61.111 15.80 6.32 0.00 3.16
323 324 3.345808 TGTTCTGGCGCGACTTGC 61.346 61.111 15.80 0.88 41.47 4.01
331 332 3.458163 CGCGACTTGCCCCTCCTA 61.458 66.667 0.00 0.00 42.08 2.94
332 333 2.187163 GCGACTTGCCCCTCCTAC 59.813 66.667 0.00 0.00 37.76 3.18
333 334 2.494918 CGACTTGCCCCTCCTACG 59.505 66.667 0.00 0.00 0.00 3.51
334 335 2.901042 GACTTGCCCCTCCTACGG 59.099 66.667 0.00 0.00 0.00 4.02
335 336 2.687566 ACTTGCCCCTCCTACGGG 60.688 66.667 0.00 0.00 44.20 5.28
351 352 2.440980 GGCCCTGCCCTTCATCAC 60.441 66.667 0.00 0.00 44.06 3.06
352 353 2.825836 GCCCTGCCCTTCATCACG 60.826 66.667 0.00 0.00 0.00 4.35
353 354 2.124570 CCCTGCCCTTCATCACGG 60.125 66.667 0.00 0.00 0.00 4.94
354 355 2.671070 CCTGCCCTTCATCACGGT 59.329 61.111 0.00 0.00 0.00 4.83
355 356 1.002134 CCTGCCCTTCATCACGGTT 60.002 57.895 0.00 0.00 0.00 4.44
356 357 0.609131 CCTGCCCTTCATCACGGTTT 60.609 55.000 0.00 0.00 0.00 3.27
357 358 0.523072 CTGCCCTTCATCACGGTTTG 59.477 55.000 0.00 0.00 0.00 2.93
358 359 0.179004 TGCCCTTCATCACGGTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
359 360 1.072489 TGCCCTTCATCACGGTTTGTA 59.928 47.619 0.00 0.00 0.00 2.41
360 361 2.156098 GCCCTTCATCACGGTTTGTAA 58.844 47.619 0.00 0.00 0.00 2.41
361 362 2.095415 GCCCTTCATCACGGTTTGTAAC 60.095 50.000 0.00 0.00 0.00 2.50
362 363 3.142951 CCCTTCATCACGGTTTGTAACA 58.857 45.455 0.00 0.00 0.00 2.41
363 364 3.188460 CCCTTCATCACGGTTTGTAACAG 59.812 47.826 0.00 0.00 0.00 3.16
364 365 4.062293 CCTTCATCACGGTTTGTAACAGA 58.938 43.478 0.00 0.00 0.00 3.41
365 366 4.513692 CCTTCATCACGGTTTGTAACAGAA 59.486 41.667 0.00 0.00 0.00 3.02
366 367 5.008217 CCTTCATCACGGTTTGTAACAGAAA 59.992 40.000 0.00 0.00 0.00 2.52
367 368 5.412526 TCATCACGGTTTGTAACAGAAAC 57.587 39.130 0.00 0.00 33.34 2.78
368 369 4.876679 TCATCACGGTTTGTAACAGAAACA 59.123 37.500 0.00 0.00 35.40 2.83
369 370 5.354513 TCATCACGGTTTGTAACAGAAACAA 59.645 36.000 0.00 0.00 35.40 2.83
370 371 5.624344 TCACGGTTTGTAACAGAAACAAA 57.376 34.783 0.00 0.00 42.83 2.83
371 372 6.010294 TCACGGTTTGTAACAGAAACAAAA 57.990 33.333 3.19 0.00 45.56 2.44
372 373 6.622549 TCACGGTTTGTAACAGAAACAAAAT 58.377 32.000 3.19 0.00 45.56 1.82
373 374 6.528423 TCACGGTTTGTAACAGAAACAAAATG 59.472 34.615 3.19 3.67 45.56 2.32
374 375 5.808030 ACGGTTTGTAACAGAAACAAAATGG 59.192 36.000 3.19 0.00 45.56 3.16
375 376 5.808030 CGGTTTGTAACAGAAACAAAATGGT 59.192 36.000 3.19 0.00 45.56 3.55
376 377 6.973474 CGGTTTGTAACAGAAACAAAATGGTA 59.027 34.615 3.19 0.00 45.56 3.25
377 378 7.488471 CGGTTTGTAACAGAAACAAAATGGTAA 59.512 33.333 3.19 0.00 45.56 2.85
378 379 9.152595 GGTTTGTAACAGAAACAAAATGGTAAA 57.847 29.630 3.19 0.00 45.56 2.01
420 421 5.238650 CAGATACATTACCGTGGGAAAATCC 59.761 44.000 0.00 0.00 35.23 3.01
456 457 2.355716 CCAATCAGCCTCCGGTCTAAAA 60.356 50.000 0.00 0.00 0.00 1.52
458 459 2.762535 TCAGCCTCCGGTCTAAAAAG 57.237 50.000 0.00 0.00 0.00 2.27
459 460 2.253610 TCAGCCTCCGGTCTAAAAAGA 58.746 47.619 0.00 0.00 0.00 2.52
460 461 2.838202 TCAGCCTCCGGTCTAAAAAGAT 59.162 45.455 0.00 0.00 0.00 2.40
461 462 3.263425 TCAGCCTCCGGTCTAAAAAGATT 59.737 43.478 0.00 0.00 0.00 2.40
462 463 4.468510 TCAGCCTCCGGTCTAAAAAGATTA 59.531 41.667 0.00 0.00 0.00 1.75
468 469 7.095187 GCCTCCGGTCTAAAAAGATTACATATG 60.095 40.741 0.00 0.00 0.00 1.78
498 499 2.594962 CGTCAACGTCGCAGGCTTT 61.595 57.895 0.00 0.00 34.11 3.51
499 500 1.647084 GTCAACGTCGCAGGCTTTT 59.353 52.632 0.00 0.00 0.00 2.27
500 501 0.028902 GTCAACGTCGCAGGCTTTTT 59.971 50.000 0.00 0.00 0.00 1.94
501 502 0.306533 TCAACGTCGCAGGCTTTTTC 59.693 50.000 0.00 0.00 0.00 2.29
542 543 4.101790 GTTGTCCCATGCGTGCCG 62.102 66.667 0.00 0.00 0.00 5.69
705 746 3.539791 GGCCATTTCCCATGCCGG 61.540 66.667 0.00 0.00 33.59 6.13
721 762 3.885521 GGGAGACGTACGGCGAGG 61.886 72.222 21.06 5.67 44.77 4.63
800 849 2.525055 CACCAAAACCACGTGAAACTG 58.475 47.619 19.30 8.79 31.75 3.16
801 850 2.162608 CACCAAAACCACGTGAAACTGA 59.837 45.455 19.30 0.00 31.75 3.41
804 853 1.011333 AAACCACGTGAAACTGACCG 58.989 50.000 19.30 0.00 31.75 4.79
818 868 1.001406 CTGACCGACTCTGCTTCCTTT 59.999 52.381 0.00 0.00 0.00 3.11
819 869 1.000955 TGACCGACTCTGCTTCCTTTC 59.999 52.381 0.00 0.00 0.00 2.62
820 870 1.273886 GACCGACTCTGCTTCCTTTCT 59.726 52.381 0.00 0.00 0.00 2.52
823 873 1.404851 CGACTCTGCTTCCTTTCTCCC 60.405 57.143 0.00 0.00 0.00 4.30
824 874 1.905894 GACTCTGCTTCCTTTCTCCCT 59.094 52.381 0.00 0.00 0.00 4.20
828 878 2.569404 TCTGCTTCCTTTCTCCCTTCTC 59.431 50.000 0.00 0.00 0.00 2.87
829 879 2.571202 CTGCTTCCTTTCTCCCTTCTCT 59.429 50.000 0.00 0.00 0.00 3.10
830 880 2.569404 TGCTTCCTTTCTCCCTTCTCTC 59.431 50.000 0.00 0.00 0.00 3.20
831 881 2.093181 GCTTCCTTTCTCCCTTCTCTCC 60.093 54.545 0.00 0.00 0.00 3.71
832 882 2.255770 TCCTTTCTCCCTTCTCTCCC 57.744 55.000 0.00 0.00 0.00 4.30
833 883 1.208706 CCTTTCTCCCTTCTCTCCCC 58.791 60.000 0.00 0.00 0.00 4.81
834 884 0.827368 CTTTCTCCCTTCTCTCCCCG 59.173 60.000 0.00 0.00 0.00 5.73
835 885 1.265454 TTTCTCCCTTCTCTCCCCGC 61.265 60.000 0.00 0.00 0.00 6.13
836 886 3.157949 CTCCCTTCTCTCCCCGCC 61.158 72.222 0.00 0.00 0.00 6.13
888 941 2.868899 CTTTCCTCCTGACTTTGGCTT 58.131 47.619 0.00 0.00 0.00 4.35
896 949 3.152341 CCTGACTTTGGCTTGATCAAGT 58.848 45.455 30.88 15.21 40.45 3.16
898 951 4.394300 CCTGACTTTGGCTTGATCAAGTAG 59.606 45.833 30.88 23.91 40.45 2.57
899 952 4.326826 TGACTTTGGCTTGATCAAGTAGG 58.673 43.478 30.88 20.34 40.45 3.18
1483 2667 4.072088 CAACCGCGCCACTCGTTC 62.072 66.667 0.00 0.00 41.07 3.95
1492 2676 1.077089 GCCACTCGTTCGTTAGCTCC 61.077 60.000 0.00 0.00 0.00 4.70
1508 2692 0.955919 CTCCAAGGCCACGTCTTTCC 60.956 60.000 5.01 0.00 0.00 3.13
1563 2747 2.583593 GATCTCGACCGGCTGCAC 60.584 66.667 0.00 0.00 0.00 4.57
1612 2800 8.609176 TCGTCTCAAAATCGGGATTTTATTTAG 58.391 33.333 16.53 12.28 46.01 1.85
1613 2801 8.395633 CGTCTCAAAATCGGGATTTTATTTAGT 58.604 33.333 16.53 0.00 46.01 2.24
1716 2913 3.875727 CGTAGAGAAGGATTAGTCGGTCA 59.124 47.826 0.00 0.00 0.00 4.02
1767 2965 3.063180 GGATCTGAAATGTCAACAGCTCG 59.937 47.826 0.00 0.00 31.88 5.03
1769 2967 3.320626 TCTGAAATGTCAACAGCTCGAG 58.679 45.455 8.45 8.45 31.88 4.04
1803 3001 1.804748 GTTCGACTTGTCCAATCCCAC 59.195 52.381 0.00 0.00 0.00 4.61
1878 3082 5.849357 TCAAATTGATGATTGTTTGCTGC 57.151 34.783 0.00 0.00 32.95 5.25
1880 3084 4.546829 AATTGATGATTGTTTGCTGCCT 57.453 36.364 0.00 0.00 0.00 4.75
1888 3092 2.582728 TGTTTGCTGCCTGAGTTTTG 57.417 45.000 0.00 0.00 0.00 2.44
1889 3093 1.824230 TGTTTGCTGCCTGAGTTTTGT 59.176 42.857 0.00 0.00 0.00 2.83
1911 3115 2.600470 TTTTGGTTCCGTGTCGTACT 57.400 45.000 0.00 0.00 0.00 2.73
1923 3127 3.183574 CGTGTCGTACTTCAATTTGCAGA 59.816 43.478 2.98 0.00 0.00 4.26
1932 3136 4.527816 ACTTCAATTTGCAGAGGCCAATAA 59.472 37.500 5.01 0.00 34.57 1.40
1937 3141 1.008079 GCAGAGGCCAATAATGCGC 60.008 57.895 5.01 0.00 0.00 6.09
1939 3143 2.050985 GAGGCCAATAATGCGCGC 60.051 61.111 27.26 27.26 0.00 6.86
1987 3191 4.250464 CACATTCCGCACCTTAGTTAAGA 58.750 43.478 0.51 0.00 35.33 2.10
2029 3233 5.380043 ACAGAAGTCACCTTGATTGATTGT 58.620 37.500 0.00 0.00 0.00 2.71
2050 3254 3.614568 TTTTTAGCCCTGTAAACCCCA 57.385 42.857 0.00 0.00 0.00 4.96
2051 3255 3.614568 TTTTAGCCCTGTAAACCCCAA 57.385 42.857 0.00 0.00 0.00 4.12
2052 3256 2.891191 TTAGCCCTGTAAACCCCAAG 57.109 50.000 0.00 0.00 0.00 3.61
2108 3321 5.005394 CGAACATAGAACTATGAACGGGTTG 59.995 44.000 23.14 1.51 44.22 3.77
2132 3345 4.940046 TCCATTTCATCTGTTTCTCTGCTC 59.060 41.667 0.00 0.00 0.00 4.26
2133 3346 4.096081 CCATTTCATCTGTTTCTCTGCTCC 59.904 45.833 0.00 0.00 0.00 4.70
2134 3347 4.356405 TTTCATCTGTTTCTCTGCTCCA 57.644 40.909 0.00 0.00 0.00 3.86
2135 3348 3.606595 TCATCTGTTTCTCTGCTCCAG 57.393 47.619 0.00 0.00 0.00 3.86
2136 3349 2.902486 TCATCTGTTTCTCTGCTCCAGT 59.098 45.455 0.00 0.00 32.61 4.00
2137 3350 4.089361 TCATCTGTTTCTCTGCTCCAGTA 58.911 43.478 0.00 0.00 32.61 2.74
2138 3351 4.713814 TCATCTGTTTCTCTGCTCCAGTAT 59.286 41.667 0.00 0.00 32.61 2.12
2147 3360 6.106648 TCTCTGCTCCAGTATCCAATAATG 57.893 41.667 0.00 0.00 32.61 1.90
2248 3461 1.739067 GGGAAGACCAACGGATGAAG 58.261 55.000 0.00 0.00 39.85 3.02
2360 3577 7.430502 GCATGCATTTAAGTTGAGTGAGAATAC 59.569 37.037 14.21 0.00 0.00 1.89
2370 3587 3.243737 TGAGTGAGAATACACGTGCAAGT 60.244 43.478 17.22 2.81 44.35 3.16
2386 3607 2.635444 CAAGTAAAACCTTGTGACGCG 58.365 47.619 3.53 3.53 37.61 6.01
2396 3617 2.741211 GTGACGCGGGAAGGAACC 60.741 66.667 12.47 0.00 0.00 3.62
2431 3652 1.424403 TCGCCGTGTGTGAAGTAATG 58.576 50.000 0.00 0.00 0.00 1.90
2446 3667 7.174253 TGTGAAGTAATGAATCCGCTAACTTTT 59.826 33.333 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.807667 CATGTCTCCCTCCGCGAAAG 60.808 60.000 8.23 4.29 0.00 2.62
1 2 1.218047 CATGTCTCCCTCCGCGAAA 59.782 57.895 8.23 0.00 0.00 3.46
2 3 2.892640 CATGTCTCCCTCCGCGAA 59.107 61.111 8.23 0.00 0.00 4.70
4 5 4.899239 GGCATGTCTCCCTCCGCG 62.899 72.222 0.00 0.00 0.00 6.46
5 6 3.785859 TGGCATGTCTCCCTCCGC 61.786 66.667 0.00 0.00 0.00 5.54
6 7 2.187946 GTGGCATGTCTCCCTCCG 59.812 66.667 0.00 0.00 0.00 4.63
7 8 2.187946 CGTGGCATGTCTCCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
9 10 1.305297 TCTCGTGGCATGTCTCCCT 60.305 57.895 6.60 0.00 0.00 4.20
10 11 1.142748 CTCTCGTGGCATGTCTCCC 59.857 63.158 6.60 0.00 0.00 4.30
11 12 0.532573 TTCTCTCGTGGCATGTCTCC 59.467 55.000 6.60 0.00 0.00 3.71
12 13 2.370281 TTTCTCTCGTGGCATGTCTC 57.630 50.000 6.60 0.00 0.00 3.36
13 14 2.027745 ACATTTCTCTCGTGGCATGTCT 60.028 45.455 6.60 0.00 0.00 3.41
14 15 2.094894 CACATTTCTCTCGTGGCATGTC 59.905 50.000 6.60 0.00 0.00 3.06
15 16 2.079158 CACATTTCTCTCGTGGCATGT 58.921 47.619 6.60 0.00 0.00 3.21
16 17 1.202110 GCACATTTCTCTCGTGGCATG 60.202 52.381 0.00 0.00 0.00 4.06
17 18 1.089920 GCACATTTCTCTCGTGGCAT 58.910 50.000 0.00 0.00 0.00 4.40
18 19 1.291184 CGCACATTTCTCTCGTGGCA 61.291 55.000 0.00 0.00 0.00 4.92
19 20 1.421485 CGCACATTTCTCTCGTGGC 59.579 57.895 0.00 0.00 0.00 5.01
20 21 0.389817 TCCGCACATTTCTCTCGTGG 60.390 55.000 0.00 0.00 0.00 4.94
21 22 1.126846 GTTCCGCACATTTCTCTCGTG 59.873 52.381 0.00 0.00 0.00 4.35
22 23 1.000955 AGTTCCGCACATTTCTCTCGT 59.999 47.619 0.00 0.00 0.00 4.18
23 24 1.391485 CAGTTCCGCACATTTCTCTCG 59.609 52.381 0.00 0.00 0.00 4.04
24 25 2.670414 CTCAGTTCCGCACATTTCTCTC 59.330 50.000 0.00 0.00 0.00 3.20
25 26 2.693069 CTCAGTTCCGCACATTTCTCT 58.307 47.619 0.00 0.00 0.00 3.10
26 27 1.129437 GCTCAGTTCCGCACATTTCTC 59.871 52.381 0.00 0.00 0.00 2.87
27 28 1.160137 GCTCAGTTCCGCACATTTCT 58.840 50.000 0.00 0.00 0.00 2.52
28 29 1.135859 CAGCTCAGTTCCGCACATTTC 60.136 52.381 0.00 0.00 0.00 2.17
29 30 0.877071 CAGCTCAGTTCCGCACATTT 59.123 50.000 0.00 0.00 0.00 2.32
30 31 0.035317 TCAGCTCAGTTCCGCACATT 59.965 50.000 0.00 0.00 0.00 2.71
31 32 0.671781 GTCAGCTCAGTTCCGCACAT 60.672 55.000 0.00 0.00 0.00 3.21
32 33 1.300931 GTCAGCTCAGTTCCGCACA 60.301 57.895 0.00 0.00 0.00 4.57
33 34 2.375766 CGTCAGCTCAGTTCCGCAC 61.376 63.158 0.00 0.00 0.00 5.34
34 35 2.049156 CGTCAGCTCAGTTCCGCA 60.049 61.111 0.00 0.00 0.00 5.69
35 36 2.811317 CCGTCAGCTCAGTTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
36 37 2.811317 GCCGTCAGCTCAGTTCCG 60.811 66.667 0.00 0.00 38.99 4.30
37 38 2.811317 CGCCGTCAGCTCAGTTCC 60.811 66.667 0.00 0.00 40.39 3.62
38 39 2.811317 CCGCCGTCAGCTCAGTTC 60.811 66.667 0.00 0.00 40.39 3.01
39 40 1.812686 TAACCGCCGTCAGCTCAGTT 61.813 55.000 0.00 0.00 40.39 3.16
40 41 2.273179 TAACCGCCGTCAGCTCAGT 61.273 57.895 0.00 0.00 40.39 3.41
41 42 1.805945 GTAACCGCCGTCAGCTCAG 60.806 63.158 0.00 0.00 40.39 3.35
42 43 1.812686 AAGTAACCGCCGTCAGCTCA 61.813 55.000 0.00 0.00 40.39 4.26
43 44 0.171903 TAAGTAACCGCCGTCAGCTC 59.828 55.000 0.00 0.00 40.39 4.09
44 45 0.172803 CTAAGTAACCGCCGTCAGCT 59.827 55.000 0.00 0.00 40.39 4.24
45 46 0.804933 CCTAAGTAACCGCCGTCAGC 60.805 60.000 0.00 0.00 38.52 4.26
46 47 0.179119 CCCTAAGTAACCGCCGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
47 48 0.611618 TCCCTAAGTAACCGCCGTCA 60.612 55.000 0.00 0.00 0.00 4.35
48 49 0.532115 TTCCCTAAGTAACCGCCGTC 59.468 55.000 0.00 0.00 0.00 4.79
49 50 1.134610 CATTCCCTAAGTAACCGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
50 51 1.134610 ACATTCCCTAAGTAACCGCCG 60.135 52.381 0.00 0.00 0.00 6.46
51 52 2.704464 ACATTCCCTAAGTAACCGCC 57.296 50.000 0.00 0.00 0.00 6.13
52 53 3.128068 CCAAACATTCCCTAAGTAACCGC 59.872 47.826 0.00 0.00 0.00 5.68
53 54 4.329392 ACCAAACATTCCCTAAGTAACCG 58.671 43.478 0.00 0.00 0.00 4.44
54 55 5.771165 TGAACCAAACATTCCCTAAGTAACC 59.229 40.000 0.00 0.00 0.00 2.85
55 56 6.072119 CCTGAACCAAACATTCCCTAAGTAAC 60.072 42.308 0.00 0.00 0.00 2.50
56 57 6.007703 CCTGAACCAAACATTCCCTAAGTAA 58.992 40.000 0.00 0.00 0.00 2.24
57 58 5.073965 ACCTGAACCAAACATTCCCTAAGTA 59.926 40.000 0.00 0.00 0.00 2.24
58 59 4.141018 ACCTGAACCAAACATTCCCTAAGT 60.141 41.667 0.00 0.00 0.00 2.24
59 60 4.407365 ACCTGAACCAAACATTCCCTAAG 58.593 43.478 0.00 0.00 0.00 2.18
60 61 4.463050 ACCTGAACCAAACATTCCCTAA 57.537 40.909 0.00 0.00 0.00 2.69
61 62 4.600111 AGTACCTGAACCAAACATTCCCTA 59.400 41.667 0.00 0.00 0.00 3.53
62 63 3.397955 AGTACCTGAACCAAACATTCCCT 59.602 43.478 0.00 0.00 0.00 4.20
63 64 3.763057 AGTACCTGAACCAAACATTCCC 58.237 45.455 0.00 0.00 0.00 3.97
64 65 5.784578 AAAGTACCTGAACCAAACATTCC 57.215 39.130 0.00 0.00 0.00 3.01
65 66 9.758651 AATAAAAAGTACCTGAACCAAACATTC 57.241 29.630 0.00 0.00 0.00 2.67
66 67 9.758651 GAATAAAAAGTACCTGAACCAAACATT 57.241 29.630 0.00 0.00 0.00 2.71
67 68 9.143155 AGAATAAAAAGTACCTGAACCAAACAT 57.857 29.630 0.00 0.00 0.00 2.71
68 69 8.528044 AGAATAAAAAGTACCTGAACCAAACA 57.472 30.769 0.00 0.00 0.00 2.83
72 73 9.498176 GTCTAAGAATAAAAAGTACCTGAACCA 57.502 33.333 0.00 0.00 0.00 3.67
73 74 9.722184 AGTCTAAGAATAAAAAGTACCTGAACC 57.278 33.333 0.00 0.00 0.00 3.62
104 105 9.387397 TGGTTTCTAGGAATTTTTAGGGATTTT 57.613 29.630 0.00 0.00 0.00 1.82
105 106 8.966155 TGGTTTCTAGGAATTTTTAGGGATTT 57.034 30.769 0.00 0.00 0.00 2.17
106 107 8.966155 TTGGTTTCTAGGAATTTTTAGGGATT 57.034 30.769 0.00 0.00 0.00 3.01
107 108 8.812972 GTTTGGTTTCTAGGAATTTTTAGGGAT 58.187 33.333 0.00 0.00 0.00 3.85
108 109 7.785506 TGTTTGGTTTCTAGGAATTTTTAGGGA 59.214 33.333 0.00 0.00 0.00 4.20
109 110 7.958088 TGTTTGGTTTCTAGGAATTTTTAGGG 58.042 34.615 0.00 0.00 0.00 3.53
110 111 8.856103 TCTGTTTGGTTTCTAGGAATTTTTAGG 58.144 33.333 0.00 0.00 0.00 2.69
113 114 8.204160 CCTTCTGTTTGGTTTCTAGGAATTTTT 58.796 33.333 0.00 0.00 0.00 1.94
114 115 7.563556 TCCTTCTGTTTGGTTTCTAGGAATTTT 59.436 33.333 0.00 0.00 0.00 1.82
115 116 7.066781 TCCTTCTGTTTGGTTTCTAGGAATTT 58.933 34.615 0.00 0.00 0.00 1.82
116 117 6.610830 TCCTTCTGTTTGGTTTCTAGGAATT 58.389 36.000 0.00 0.00 0.00 2.17
117 118 6.200878 TCCTTCTGTTTGGTTTCTAGGAAT 57.799 37.500 0.00 0.00 0.00 3.01
118 119 5.640158 TCCTTCTGTTTGGTTTCTAGGAA 57.360 39.130 0.00 0.00 0.00 3.36
119 120 5.132144 AGTTCCTTCTGTTTGGTTTCTAGGA 59.868 40.000 0.00 0.00 0.00 2.94
120 121 5.377478 AGTTCCTTCTGTTTGGTTTCTAGG 58.623 41.667 0.00 0.00 0.00 3.02
121 122 6.944234 AAGTTCCTTCTGTTTGGTTTCTAG 57.056 37.500 0.00 0.00 0.00 2.43
122 123 7.712204 AAAAGTTCCTTCTGTTTGGTTTCTA 57.288 32.000 0.00 0.00 0.00 2.10
123 124 6.605471 AAAAGTTCCTTCTGTTTGGTTTCT 57.395 33.333 0.00 0.00 0.00 2.52
124 125 7.097192 AGAAAAAGTTCCTTCTGTTTGGTTTC 58.903 34.615 0.54 0.00 33.92 2.78
125 126 7.004555 AGAAAAAGTTCCTTCTGTTTGGTTT 57.995 32.000 0.54 0.00 33.92 3.27
126 127 6.605471 AGAAAAAGTTCCTTCTGTTTGGTT 57.395 33.333 0.54 0.00 33.92 3.67
127 128 6.661805 TGTAGAAAAAGTTCCTTCTGTTTGGT 59.338 34.615 9.42 0.00 33.89 3.67
128 129 6.972901 GTGTAGAAAAAGTTCCTTCTGTTTGG 59.027 38.462 9.42 0.00 33.89 3.28
129 130 6.687105 CGTGTAGAAAAAGTTCCTTCTGTTTG 59.313 38.462 9.42 0.00 33.89 2.93
130 131 6.183360 CCGTGTAGAAAAAGTTCCTTCTGTTT 60.183 38.462 9.42 0.00 33.89 2.83
131 132 5.296035 CCGTGTAGAAAAAGTTCCTTCTGTT 59.704 40.000 9.42 0.00 33.89 3.16
132 133 4.814771 CCGTGTAGAAAAAGTTCCTTCTGT 59.185 41.667 9.42 0.00 33.89 3.41
133 134 5.050295 GTCCGTGTAGAAAAAGTTCCTTCTG 60.050 44.000 9.42 0.00 33.89 3.02
134 135 5.055144 GTCCGTGTAGAAAAAGTTCCTTCT 58.945 41.667 5.71 5.71 35.99 2.85
135 136 5.055144 AGTCCGTGTAGAAAAAGTTCCTTC 58.945 41.667 0.00 0.00 33.92 3.46
136 137 5.032327 AGTCCGTGTAGAAAAAGTTCCTT 57.968 39.130 0.00 0.00 33.92 3.36
137 138 4.684484 AGTCCGTGTAGAAAAAGTTCCT 57.316 40.909 0.00 0.00 33.92 3.36
138 139 5.776744 TCTAGTCCGTGTAGAAAAAGTTCC 58.223 41.667 0.00 0.00 33.92 3.62
139 140 7.704789 TTTCTAGTCCGTGTAGAAAAAGTTC 57.295 36.000 8.06 0.00 41.43 3.01
145 146 7.014038 AGAGTCTTTTTCTAGTCCGTGTAGAAA 59.986 37.037 6.90 6.90 42.24 2.52
146 147 6.489361 AGAGTCTTTTTCTAGTCCGTGTAGAA 59.511 38.462 0.00 0.00 35.21 2.10
147 148 6.002704 AGAGTCTTTTTCTAGTCCGTGTAGA 58.997 40.000 0.00 0.00 0.00 2.59
148 149 6.256912 AGAGTCTTTTTCTAGTCCGTGTAG 57.743 41.667 0.00 0.00 0.00 2.74
149 150 7.201591 CGATAGAGTCTTTTTCTAGTCCGTGTA 60.202 40.741 0.00 0.00 39.76 2.90
150 151 6.403418 CGATAGAGTCTTTTTCTAGTCCGTGT 60.403 42.308 0.00 0.00 39.76 4.49
151 152 5.966503 CGATAGAGTCTTTTTCTAGTCCGTG 59.033 44.000 0.00 0.00 39.76 4.94
152 153 5.879223 TCGATAGAGTCTTTTTCTAGTCCGT 59.121 40.000 0.00 0.00 42.67 4.69
153 154 6.360844 TCGATAGAGTCTTTTTCTAGTCCG 57.639 41.667 0.00 0.00 42.67 4.79
194 195 8.775527 CCTAAGACTTTTTCTAGTTTCAGGAAC 58.224 37.037 0.00 0.00 34.00 3.62
195 196 8.711170 TCCTAAGACTTTTTCTAGTTTCAGGAA 58.289 33.333 0.00 0.00 32.51 3.36
196 197 8.148999 GTCCTAAGACTTTTTCTAGTTTCAGGA 58.851 37.037 0.00 0.00 40.10 3.86
197 198 8.312896 GTCCTAAGACTTTTTCTAGTTTCAGG 57.687 38.462 0.00 0.00 40.10 3.86
213 214 6.263344 GTGTTTGGTTCAAAAGTCCTAAGAC 58.737 40.000 0.00 0.00 43.89 3.01
214 215 5.358725 GGTGTTTGGTTCAAAAGTCCTAAGA 59.641 40.000 0.00 0.00 35.03 2.10
215 216 5.451381 GGGTGTTTGGTTCAAAAGTCCTAAG 60.451 44.000 0.00 0.00 35.03 2.18
216 217 4.403113 GGGTGTTTGGTTCAAAAGTCCTAA 59.597 41.667 0.00 0.00 35.03 2.69
217 218 3.955551 GGGTGTTTGGTTCAAAAGTCCTA 59.044 43.478 0.00 0.00 35.03 2.94
218 219 2.764010 GGGTGTTTGGTTCAAAAGTCCT 59.236 45.455 0.00 0.00 35.03 3.85
219 220 2.159014 GGGGTGTTTGGTTCAAAAGTCC 60.159 50.000 0.00 0.00 35.03 3.85
220 221 2.159014 GGGGGTGTTTGGTTCAAAAGTC 60.159 50.000 0.00 0.00 35.03 3.01
221 222 1.834896 GGGGGTGTTTGGTTCAAAAGT 59.165 47.619 0.00 0.00 35.03 2.66
222 223 2.115427 AGGGGGTGTTTGGTTCAAAAG 58.885 47.619 0.00 0.00 35.03 2.27
223 224 2.255770 AGGGGGTGTTTGGTTCAAAA 57.744 45.000 0.00 0.00 35.03 2.44
224 225 2.255770 AAGGGGGTGTTTGGTTCAAA 57.744 45.000 0.00 0.00 0.00 2.69
225 226 2.425102 CCTAAGGGGGTGTTTGGTTCAA 60.425 50.000 0.00 0.00 0.00 2.69
226 227 1.146152 CCTAAGGGGGTGTTTGGTTCA 59.854 52.381 0.00 0.00 0.00 3.18
227 228 1.919240 CCTAAGGGGGTGTTTGGTTC 58.081 55.000 0.00 0.00 0.00 3.62
228 229 0.178944 GCCTAAGGGGGTGTTTGGTT 60.179 55.000 0.00 0.00 35.12 3.67
229 230 1.365105 TGCCTAAGGGGGTGTTTGGT 61.365 55.000 0.00 0.00 35.12 3.67
230 231 0.611896 CTGCCTAAGGGGGTGTTTGG 60.612 60.000 0.00 0.00 35.12 3.28
231 232 0.404040 TCTGCCTAAGGGGGTGTTTG 59.596 55.000 0.00 0.00 35.12 2.93
232 233 1.285078 GATCTGCCTAAGGGGGTGTTT 59.715 52.381 0.00 0.00 35.12 2.83
233 234 0.919710 GATCTGCCTAAGGGGGTGTT 59.080 55.000 0.00 0.00 35.12 3.32
234 235 0.253160 TGATCTGCCTAAGGGGGTGT 60.253 55.000 0.00 0.00 35.12 4.16
235 236 0.181350 GTGATCTGCCTAAGGGGGTG 59.819 60.000 0.00 0.00 35.12 4.61
236 237 0.988678 GGTGATCTGCCTAAGGGGGT 60.989 60.000 0.00 0.00 35.12 4.95
237 238 0.988145 TGGTGATCTGCCTAAGGGGG 60.988 60.000 8.07 0.00 35.12 5.40
238 239 1.072965 GATGGTGATCTGCCTAAGGGG 59.927 57.143 8.07 0.00 38.36 4.79
239 240 2.053244 AGATGGTGATCTGCCTAAGGG 58.947 52.381 8.07 0.00 37.56 3.95
248 249 2.170187 GGTTCTCTGCAGATGGTGATCT 59.830 50.000 18.63 0.00 39.75 2.75
249 250 2.170187 AGGTTCTCTGCAGATGGTGATC 59.830 50.000 18.63 9.73 0.00 2.92
250 251 2.170187 GAGGTTCTCTGCAGATGGTGAT 59.830 50.000 18.63 1.84 0.00 3.06
251 252 1.552337 GAGGTTCTCTGCAGATGGTGA 59.448 52.381 18.63 8.17 0.00 4.02
252 253 1.406614 GGAGGTTCTCTGCAGATGGTG 60.407 57.143 18.63 5.53 33.66 4.17
253 254 0.908198 GGAGGTTCTCTGCAGATGGT 59.092 55.000 18.63 0.03 33.66 3.55
254 255 1.202330 AGGAGGTTCTCTGCAGATGG 58.798 55.000 18.63 6.76 36.17 3.51
255 256 3.030291 ACTAGGAGGTTCTCTGCAGATG 58.970 50.000 18.63 11.61 36.17 2.90
256 257 3.030291 CACTAGGAGGTTCTCTGCAGAT 58.970 50.000 18.63 0.61 36.17 2.90
257 258 2.225142 ACACTAGGAGGTTCTCTGCAGA 60.225 50.000 17.19 17.19 36.17 4.26
258 259 2.175202 ACACTAGGAGGTTCTCTGCAG 58.825 52.381 7.63 7.63 36.17 4.41
259 260 2.310779 ACACTAGGAGGTTCTCTGCA 57.689 50.000 0.00 0.00 36.17 4.41
260 261 4.803098 TTTACACTAGGAGGTTCTCTGC 57.197 45.455 0.00 0.00 0.00 4.26
261 262 5.480205 GGTTTTACACTAGGAGGTTCTCTG 58.520 45.833 0.00 0.00 0.00 3.35
262 263 4.220163 CGGTTTTACACTAGGAGGTTCTCT 59.780 45.833 0.00 0.00 0.00 3.10
263 264 4.492611 CGGTTTTACACTAGGAGGTTCTC 58.507 47.826 0.00 0.00 0.00 2.87
264 265 3.260128 CCGGTTTTACACTAGGAGGTTCT 59.740 47.826 0.00 0.00 0.00 3.01
265 266 3.593096 CCGGTTTTACACTAGGAGGTTC 58.407 50.000 0.00 0.00 0.00 3.62
266 267 2.303890 CCCGGTTTTACACTAGGAGGTT 59.696 50.000 0.00 0.00 0.00 3.50
267 268 1.904537 CCCGGTTTTACACTAGGAGGT 59.095 52.381 0.00 0.00 0.00 3.85
268 269 1.406477 GCCCGGTTTTACACTAGGAGG 60.406 57.143 0.00 0.00 0.00 4.30
269 270 1.553704 AGCCCGGTTTTACACTAGGAG 59.446 52.381 0.00 0.00 0.00 3.69
270 271 1.276989 CAGCCCGGTTTTACACTAGGA 59.723 52.381 0.00 0.00 0.00 2.94
271 272 1.276989 TCAGCCCGGTTTTACACTAGG 59.723 52.381 0.00 0.00 0.00 3.02
272 273 2.344025 GTCAGCCCGGTTTTACACTAG 58.656 52.381 0.00 0.00 0.00 2.57
273 274 1.002315 GGTCAGCCCGGTTTTACACTA 59.998 52.381 0.00 0.00 0.00 2.74
274 275 0.250597 GGTCAGCCCGGTTTTACACT 60.251 55.000 0.00 0.00 0.00 3.55
275 276 0.535553 TGGTCAGCCCGGTTTTACAC 60.536 55.000 0.00 0.00 35.15 2.90
276 277 0.183014 TTGGTCAGCCCGGTTTTACA 59.817 50.000 0.00 0.00 35.15 2.41
277 278 0.879090 CTTGGTCAGCCCGGTTTTAC 59.121 55.000 0.00 0.00 35.15 2.01
278 279 0.475044 ACTTGGTCAGCCCGGTTTTA 59.525 50.000 0.00 0.00 35.15 1.52
279 280 1.106944 CACTTGGTCAGCCCGGTTTT 61.107 55.000 0.00 0.00 35.15 2.43
280 281 1.528309 CACTTGGTCAGCCCGGTTT 60.528 57.895 0.00 0.00 35.15 3.27
281 282 1.779061 ATCACTTGGTCAGCCCGGTT 61.779 55.000 0.00 0.00 35.15 4.44
282 283 2.185310 GATCACTTGGTCAGCCCGGT 62.185 60.000 0.00 0.00 35.15 5.28
283 284 1.450312 GATCACTTGGTCAGCCCGG 60.450 63.158 0.00 0.00 35.15 5.73
284 285 1.450312 GGATCACTTGGTCAGCCCG 60.450 63.158 0.00 0.00 35.15 6.13
285 286 1.450312 CGGATCACTTGGTCAGCCC 60.450 63.158 0.00 0.00 0.00 5.19
286 287 2.109126 GCGGATCACTTGGTCAGCC 61.109 63.158 3.46 0.00 30.79 4.85
287 288 2.456119 CGCGGATCACTTGGTCAGC 61.456 63.158 0.00 4.69 33.17 4.26
288 289 1.079819 ACGCGGATCACTTGGTCAG 60.080 57.895 12.47 0.00 0.00 3.51
289 290 1.374125 CACGCGGATCACTTGGTCA 60.374 57.895 12.47 0.00 0.00 4.02
290 291 0.949105 AACACGCGGATCACTTGGTC 60.949 55.000 12.47 0.00 0.00 4.02
291 292 0.949105 GAACACGCGGATCACTTGGT 60.949 55.000 12.47 0.00 0.00 3.67
292 293 0.670546 AGAACACGCGGATCACTTGG 60.671 55.000 12.47 0.00 0.00 3.61
293 294 0.439985 CAGAACACGCGGATCACTTG 59.560 55.000 12.47 0.00 0.00 3.16
294 295 0.670546 CCAGAACACGCGGATCACTT 60.671 55.000 12.47 0.00 0.00 3.16
295 296 1.079819 CCAGAACACGCGGATCACT 60.080 57.895 12.47 0.00 0.00 3.41
296 297 2.740714 GCCAGAACACGCGGATCAC 61.741 63.158 12.47 0.00 0.00 3.06
297 298 2.434185 GCCAGAACACGCGGATCA 60.434 61.111 12.47 0.00 0.00 2.92
298 299 3.554692 CGCCAGAACACGCGGATC 61.555 66.667 12.47 5.41 44.57 3.36
304 305 3.036084 AAGTCGCGCCAGAACACG 61.036 61.111 0.00 0.00 0.00 4.49
305 306 2.551270 CAAGTCGCGCCAGAACAC 59.449 61.111 0.00 0.00 0.00 3.32
306 307 3.345808 GCAAGTCGCGCCAGAACA 61.346 61.111 0.00 0.00 0.00 3.18
314 315 3.458163 TAGGAGGGGCAAGTCGCG 61.458 66.667 0.00 0.00 43.84 5.87
315 316 2.187163 GTAGGAGGGGCAAGTCGC 59.813 66.667 0.00 0.00 41.28 5.19
316 317 2.494918 CGTAGGAGGGGCAAGTCG 59.505 66.667 0.00 0.00 0.00 4.18
335 336 2.825836 CGTGATGAAGGGCAGGGC 60.826 66.667 0.00 0.00 0.00 5.19
336 337 2.124570 CCGTGATGAAGGGCAGGG 60.125 66.667 0.00 0.00 34.24 4.45
337 338 0.609131 AAACCGTGATGAAGGGCAGG 60.609 55.000 0.00 0.00 37.32 4.85
338 339 0.523072 CAAACCGTGATGAAGGGCAG 59.477 55.000 0.00 0.00 37.32 4.85
339 340 0.179004 ACAAACCGTGATGAAGGGCA 60.179 50.000 0.00 0.00 37.32 5.36
340 341 1.816074 TACAAACCGTGATGAAGGGC 58.184 50.000 0.00 0.00 37.32 5.19
341 342 3.142951 TGTTACAAACCGTGATGAAGGG 58.857 45.455 0.00 0.00 39.88 3.95
342 343 4.062293 TCTGTTACAAACCGTGATGAAGG 58.938 43.478 0.00 0.00 0.00 3.46
343 344 5.666969 TTCTGTTACAAACCGTGATGAAG 57.333 39.130 0.00 0.00 0.00 3.02
344 345 5.354513 TGTTTCTGTTACAAACCGTGATGAA 59.645 36.000 0.00 0.00 33.49 2.57
345 346 4.876679 TGTTTCTGTTACAAACCGTGATGA 59.123 37.500 0.00 0.00 33.49 2.92
346 347 5.163302 TGTTTCTGTTACAAACCGTGATG 57.837 39.130 0.00 0.00 33.49 3.07
347 348 5.821516 TTGTTTCTGTTACAAACCGTGAT 57.178 34.783 0.00 0.00 33.49 3.06
348 349 5.624344 TTTGTTTCTGTTACAAACCGTGA 57.376 34.783 0.00 0.00 39.75 4.35
349 350 6.237701 CCATTTTGTTTCTGTTACAAACCGTG 60.238 38.462 0.00 0.00 43.11 4.94
350 351 5.808030 CCATTTTGTTTCTGTTACAAACCGT 59.192 36.000 0.00 0.00 43.11 4.83
351 352 5.808030 ACCATTTTGTTTCTGTTACAAACCG 59.192 36.000 0.00 0.00 43.11 4.44
352 353 8.705048 TTACCATTTTGTTTCTGTTACAAACC 57.295 30.769 0.00 0.00 43.11 3.27
384 385 9.826574 ACGGTAATGTATCTGTATGTTTGTATT 57.173 29.630 0.00 0.00 0.00 1.89
385 386 9.256477 CACGGTAATGTATCTGTATGTTTGTAT 57.744 33.333 0.00 0.00 0.00 2.29
386 387 7.707464 CCACGGTAATGTATCTGTATGTTTGTA 59.293 37.037 0.00 0.00 0.00 2.41
387 388 6.537301 CCACGGTAATGTATCTGTATGTTTGT 59.463 38.462 0.00 0.00 0.00 2.83
388 389 6.018262 CCCACGGTAATGTATCTGTATGTTTG 60.018 42.308 0.00 0.00 0.00 2.93
389 390 6.053005 CCCACGGTAATGTATCTGTATGTTT 58.947 40.000 0.00 0.00 0.00 2.83
390 391 5.364446 TCCCACGGTAATGTATCTGTATGTT 59.636 40.000 0.00 0.00 0.00 2.71
391 392 4.897076 TCCCACGGTAATGTATCTGTATGT 59.103 41.667 0.00 0.00 0.00 2.29
392 393 5.462530 TCCCACGGTAATGTATCTGTATG 57.537 43.478 0.00 0.00 0.00 2.39
393 394 6.488769 TTTCCCACGGTAATGTATCTGTAT 57.511 37.500 0.00 0.00 0.00 2.29
394 395 5.936187 TTTCCCACGGTAATGTATCTGTA 57.064 39.130 0.00 0.00 0.00 2.74
395 396 4.829872 TTTCCCACGGTAATGTATCTGT 57.170 40.909 0.00 0.00 0.00 3.41
396 397 5.238650 GGATTTTCCCACGGTAATGTATCTG 59.761 44.000 0.00 0.00 0.00 2.90
397 398 5.374071 GGATTTTCCCACGGTAATGTATCT 58.626 41.667 0.00 0.00 0.00 1.98
398 399 5.684550 GGATTTTCCCACGGTAATGTATC 57.315 43.478 0.00 0.00 0.00 2.24
456 457 3.412386 GGCTTCGCCCATATGTAATCTT 58.588 45.455 1.24 0.00 44.06 2.40
490 491 0.967887 GAGGGGGAGAAAAAGCCTGC 60.968 60.000 0.00 0.00 0.00 4.85
498 499 1.489230 GATTTAGGCGAGGGGGAGAAA 59.511 52.381 0.00 0.00 0.00 2.52
499 500 1.129058 GATTTAGGCGAGGGGGAGAA 58.871 55.000 0.00 0.00 0.00 2.87
500 501 1.113517 CGATTTAGGCGAGGGGGAGA 61.114 60.000 0.00 0.00 0.00 3.71
501 502 1.367840 CGATTTAGGCGAGGGGGAG 59.632 63.158 0.00 0.00 0.00 4.30
560 561 2.124695 GCGGTCCATCCTTGGGTC 60.125 66.667 0.00 0.00 43.81 4.46
603 604 1.186030 GTGACGCGATGGTAAGTACG 58.814 55.000 15.93 0.00 0.00 3.67
604 605 2.448219 GAGTGACGCGATGGTAAGTAC 58.552 52.381 15.93 0.00 0.00 2.73
605 606 1.063027 CGAGTGACGCGATGGTAAGTA 59.937 52.381 15.93 0.00 34.51 2.24
606 607 0.179171 CGAGTGACGCGATGGTAAGT 60.179 55.000 15.93 0.00 34.51 2.24
687 728 2.759149 CGGCATGGGAAATGGCCA 60.759 61.111 8.56 8.56 46.75 5.36
705 746 3.105852 GACCTCGCCGTACGTCTCC 62.106 68.421 15.21 0.00 44.19 3.71
766 815 2.108362 GGTGGAGGATAACGCGGG 59.892 66.667 12.47 0.00 0.00 6.13
800 849 1.273886 AGAAAGGAAGCAGAGTCGGTC 59.726 52.381 0.00 0.00 0.00 4.79
801 850 1.273886 GAGAAAGGAAGCAGAGTCGGT 59.726 52.381 0.00 0.00 0.00 4.69
804 853 1.905894 AGGGAGAAAGGAAGCAGAGTC 59.094 52.381 0.00 0.00 0.00 3.36
818 868 2.042843 GCGGGGAGAGAAGGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
819 869 3.157949 GGCGGGGAGAGAAGGGAG 61.158 72.222 0.00 0.00 0.00 4.30
823 873 4.214327 GAGCGGCGGGGAGAGAAG 62.214 72.222 9.78 0.00 0.00 2.85
834 884 1.473278 AGGTTATATAGAGCGAGCGGC 59.527 52.381 0.00 0.00 44.05 6.53
835 885 2.732597 GCAGGTTATATAGAGCGAGCGG 60.733 54.545 0.00 0.00 0.00 5.52
836 886 2.520979 GCAGGTTATATAGAGCGAGCG 58.479 52.381 0.00 0.00 0.00 5.03
896 949 9.521841 GCAGCAGAGGATATGTATATATACCTA 57.478 37.037 18.20 13.65 31.44 3.08
898 951 8.415950 AGCAGCAGAGGATATGTATATATACC 57.584 38.462 18.20 4.63 31.44 2.73
899 952 8.519526 GGAGCAGCAGAGGATATGTATATATAC 58.480 40.741 14.86 14.86 31.27 1.47
908 961 1.275856 GGAGGAGCAGCAGAGGATATG 59.724 57.143 0.00 0.00 0.00 1.78
913 966 3.478274 GGGGAGGAGCAGCAGAGG 61.478 72.222 0.00 0.00 0.00 3.69
914 967 3.478274 GGGGGAGGAGCAGCAGAG 61.478 72.222 0.00 0.00 0.00 3.35
1483 2667 2.100631 CGTGGCCTTGGAGCTAACG 61.101 63.158 3.32 0.00 36.80 3.18
1484 2668 1.003718 ACGTGGCCTTGGAGCTAAC 60.004 57.895 3.32 0.00 0.00 2.34
1485 2669 1.192146 AGACGTGGCCTTGGAGCTAA 61.192 55.000 3.32 0.00 0.00 3.09
1486 2670 1.192146 AAGACGTGGCCTTGGAGCTA 61.192 55.000 3.32 0.00 0.00 3.32
1492 2676 3.021451 AAGGAAAGACGTGGCCTTG 57.979 52.632 3.32 0.00 39.18 3.61
1563 2747 8.767085 ACGATGTAAACCCACAATAAATATACG 58.233 33.333 0.00 0.00 30.84 3.06
1612 2800 3.943381 AGTGGCGCCCTAAACTAAATTAC 59.057 43.478 26.77 10.49 0.00 1.89
1613 2801 4.224991 AGTGGCGCCCTAAACTAAATTA 57.775 40.909 26.77 0.00 0.00 1.40
1614 2802 3.081710 AGTGGCGCCCTAAACTAAATT 57.918 42.857 26.77 0.00 0.00 1.82
1615 2803 2.801077 AGTGGCGCCCTAAACTAAAT 57.199 45.000 26.77 0.00 0.00 1.40
1616 2804 2.554893 CAAAGTGGCGCCCTAAACTAAA 59.445 45.455 26.77 0.00 0.00 1.85
1617 2805 2.156098 CAAAGTGGCGCCCTAAACTAA 58.844 47.619 26.77 0.00 0.00 2.24
1618 2806 1.072648 ACAAAGTGGCGCCCTAAACTA 59.927 47.619 26.77 0.00 0.00 2.24
1619 2807 0.179001 ACAAAGTGGCGCCCTAAACT 60.179 50.000 26.77 18.24 0.00 2.66
1692 2889 3.118112 ACCGACTAATCCTTCTCTACGGA 60.118 47.826 0.00 0.00 40.78 4.69
1711 2908 2.154963 CGACCACGCATATATTTGACCG 59.845 50.000 0.00 0.00 0.00 4.79
1716 2913 4.201871 CCAAACACGACCACGCATATATTT 60.202 41.667 0.00 0.00 43.96 1.40
1850 3048 9.878667 AGCAAACAATCATCAATTTGATATGAA 57.121 25.926 11.44 0.00 34.28 2.57
1852 3050 8.061857 GCAGCAAACAATCATCAATTTGATATG 58.938 33.333 11.44 12.59 34.28 1.78
1853 3051 7.225931 GGCAGCAAACAATCATCAATTTGATAT 59.774 33.333 11.44 4.14 34.28 1.63
1854 3052 6.535865 GGCAGCAAACAATCATCAATTTGATA 59.464 34.615 11.44 2.11 34.28 2.15
1855 3053 5.353123 GGCAGCAAACAATCATCAATTTGAT 59.647 36.000 6.06 6.06 37.65 2.57
1857 3055 4.693566 AGGCAGCAAACAATCATCAATTTG 59.306 37.500 0.00 0.00 35.57 2.32
1860 3064 3.512329 TCAGGCAGCAAACAATCATCAAT 59.488 39.130 0.00 0.00 0.00 2.57
1904 3108 3.424962 GCCTCTGCAAATTGAAGTACGAC 60.425 47.826 0.20 0.00 37.47 4.34
1906 3110 2.159517 GGCCTCTGCAAATTGAAGTACG 60.160 50.000 0.20 0.00 40.13 3.67
1911 3115 5.421277 CATTATTGGCCTCTGCAAATTGAA 58.579 37.500 3.32 0.00 37.93 2.69
1923 3127 3.952675 CGCGCGCATTATTGGCCT 61.953 61.111 32.61 0.00 0.00 5.19
1932 3136 4.227134 AGAATCTCCCGCGCGCAT 62.227 61.111 32.61 13.98 0.00 4.73
1937 3141 1.519455 GTGTCCAGAATCTCCCGCG 60.519 63.158 0.00 0.00 0.00 6.46
1939 3143 0.530744 TTCGTGTCCAGAATCTCCCG 59.469 55.000 0.00 0.00 0.00 5.14
1987 3191 4.098960 TCTGTCTTTTCCGAACTGTGTAGT 59.901 41.667 0.00 0.00 39.32 2.73
2041 3245 2.140717 CGTGACTGTCTTGGGGTTTAC 58.859 52.381 9.51 0.00 0.00 2.01
2047 3251 2.007049 GCCATACGTGACTGTCTTGGG 61.007 57.143 9.51 3.73 0.00 4.12
2050 3254 1.204941 GGAGCCATACGTGACTGTCTT 59.795 52.381 9.51 0.00 0.00 3.01
2051 3255 0.818296 GGAGCCATACGTGACTGTCT 59.182 55.000 9.51 0.00 0.00 3.41
2052 3256 0.530744 TGGAGCCATACGTGACTGTC 59.469 55.000 0.00 0.00 0.00 3.51
2108 3321 4.699257 AGCAGAGAAACAGATGAAATGGAC 59.301 41.667 0.00 0.00 0.00 4.02
2132 3345 3.157087 GGTGGCCATTATTGGATACTGG 58.843 50.000 9.72 0.00 46.92 4.00
2133 3346 3.569701 GTGGTGGCCATTATTGGATACTG 59.430 47.826 9.72 0.00 46.92 2.74
2134 3347 3.204158 TGTGGTGGCCATTATTGGATACT 59.796 43.478 9.72 0.00 46.92 2.12
2135 3348 3.317993 GTGTGGTGGCCATTATTGGATAC 59.682 47.826 9.72 5.27 46.92 2.24
2136 3349 3.053320 TGTGTGGTGGCCATTATTGGATA 60.053 43.478 9.72 0.00 46.92 2.59
2137 3350 2.292126 TGTGTGGTGGCCATTATTGGAT 60.292 45.455 9.72 0.00 46.92 3.41
2138 3351 1.076187 TGTGTGGTGGCCATTATTGGA 59.924 47.619 9.72 0.00 46.92 3.53
2147 3360 1.454847 TTCCTGTTGTGTGGTGGCC 60.455 57.895 0.00 0.00 0.00 5.36
2149 3362 1.024271 CTGTTCCTGTTGTGTGGTGG 58.976 55.000 0.00 0.00 0.00 4.61
2248 3461 9.699703 GGTGAGATTATACTAAAGGAAGTGATC 57.300 37.037 0.00 0.00 0.00 2.92
2264 3477 8.934023 TCCTAAACAAAGTTTGGTGAGATTAT 57.066 30.769 18.36 0.00 29.59 1.28
2336 3552 8.454106 GTGTATTCTCACTCAACTTAAATGCAT 58.546 33.333 0.00 0.00 35.68 3.96
2346 3562 3.057019 TGCACGTGTATTCTCACTCAAC 58.943 45.455 18.38 0.00 36.33 3.18
2349 3565 3.318017 ACTTGCACGTGTATTCTCACTC 58.682 45.455 18.38 0.00 36.33 3.51
2370 3587 0.106335 TCCCGCGTCACAAGGTTTTA 59.894 50.000 4.92 0.00 0.00 1.52
2386 3607 4.527944 CCAGAATCTAAAGGTTCCTTCCC 58.472 47.826 4.48 0.00 0.00 3.97
2396 3617 2.351726 CGGCGAAACCCAGAATCTAAAG 59.648 50.000 0.00 0.00 33.26 1.85
2431 3652 7.250569 TCAATGAATGAAAAGTTAGCGGATTC 58.749 34.615 0.00 0.00 34.30 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.