>input_sequence_79545
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--------------ATGGGGTTCCCCCTGGTGTGCTACTGCGTCGCCATCCCCAAGCCGATCATCGCCTTCTGCAAGCTC
GTCGCCGCCGTCCGGGACGCCCTCCTCCTGCTGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTCCACGA
CGCCCCGCTGCCCGAGGAGGTCAAGGAGCGCCTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCGCAGCAGCAGC
AGGGGTGCCACGACGGGGACG---------CCGCGGCGGCGGCGACGTGCATCGTGTGCCTGGAGCGGCTGCGGGCGGCG
GACGAGGTGCGGCGGCTGGGCAACTGCGCGCACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGAC
CACCTGCCCGCTGTGCCGCTCCCACCTACTGCCCCGCCCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTT
GGTGA---------------------------------------------------------------------------
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--
>chr6A_1_TraesCS6A01G259200
CTTTCGCGGAGGGAGACATGCCACGAGAGAAATGTGCGGAACTGAGCTGACGGCGGTTACTTAGGGAATGTTTGGTTCAG
GTACTTTTTATTCTTAGACTAGAAAAAATCCCTAAAAATTCCTAGAAACCAAACAGAAGGAACTTTTTCTACACGGACTA
GAAAAAGACTCTATCGAAGAGTCTTTTTTGATTAGTTCCTGAAACTAGAAAAAGTCTTAGGACTTTTGAACCAAACACCC
CCTTAGGCAGATCACCATCTGCAGAGAACCTCCTAGTGTAAAACCGGGCTGACCAAGTGATCCGCGTGTTCTGGCGCGAC
TTGCCCCTCCTACGGGCCCTGCCCTTCATCACGGTTTGTAACAGAAACAAAATGGTAAAAAACAAATACAAACATACAGA
TACATTACCGTGGGAAAATCCCGTTACAGGCGGCACCAATCAGCCTCCGGTCTAAAAAGATTACATATGGGCGAAGCCCG
CGTCAACGTCGCAGGCTTTTTCTCCCCCTCGCCTAAATCGCTCGTGTTGTCCCATGCGTGCCGAGTCCATGCCAGTGCAC
GACCCAAGGATGGACCGCACGTCCCCGCCACCACGCGGGCGTTCGTACTTACCAT-------------------------
CGCGTCACTCGTCCCCCGCGTTTTAACGACCCGGG----CTGGGCAGCTTCCGCGCACG-----------CACGCACGCA
CGCACGCTGGCCATTTCCCATGCCGGGAGACGTACGGCGAGGTCGT--------CCCGTGTCCCCTCCGTCCACCCCTCC
CCAACCCTTCCCGGCCCGCGTTATCCTCCACCAAAACCACGTGAAACTGACCGA-CTCTGCTTCCTTTCTCCCTTCTCTC
CCCGCCGCTCGCTCTATATAACCTGCGAGCGCGCGCGCTTTCCTCCTGACTTTG---GCTTGATCAAGTAGGTATATATA
CATATCCTCTG---------------------------------------------------------------------
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-------------------------------------------------------------------------------C
TGCTCCTCCCCCGCAAACGATC----GACGGGCCTGGCCGGCGCAGCCTGCGACGTCCGAGCTCCCGCCGCGC-------
---CGTCTCCGGCCATGGGGTTCCCCCTGGTGTGCTACTGCGTCGCCATCCCCAAGCCGATCATCGCCTTCTGCAAGCTC
GTCGCCGCCGTCCGGGACGCCCTCCTCCTGCTGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTCCACGA
CGCCCCGCTGCCCGAGGAGGTCAAGGAGCGCCTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCGCAGCAGCAGC
AGGGGTGCCACGACGGGGACG---------CCGCGGCGGCGGCGACGTGCATCGTGTGCCTGGAGCGGCTGCGGGCGGCG
GACGAGGTGCGGCGGCTGGGCAACTGCGCGCACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGAC
CACCTGCCCGCTGTGCCGCTCCCACCTACTGCCCCGCCCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTT
GGTGACGACCAACCGCGCCACTCGTTCGTTAGCTCCAAGGCCACGTCTTTCCTTGTCCCAGCGCGGTGGCGGCCGACACA
GAGATTCGCGATCTCGACCGGCTGCACGTATATTT----ATTGTGGGTTTACATCGTCTCAAAATCGGGATTTTATTTAG
TAATTTAGT------TTAGGGCGCCACTTTGTA---TAGCCATCCAATCACGAGGTCACCAATAGGTGCACAAGCATAGT
TTTTTTTTTCCGTAGAGAAGGATTAGTCGGTCAAATATATGCGTGGTCGTGTTTGGCTAGTGGATCT-GAAATGTCAACA
GCTCGAGAACGCATGTCGCTGTTCGACTTGTCCAATCCCACTCGTGGGACTACGACGTACAGTTGTAGTATAACTCATAC
TTGATTCTTCATATC------AAATTGATGATTGTTTGCTGCCTGAGTTTTGTTTTTTTGGTTCCGTGTCGTACTTCAAT
TTGCAGAGGCCAATAATGCGCGCGGGAGATTCTGGACACGAACATGTGCACATTCCGCACCTTAGTTAAGACTACACAGT
TCGGAAAAGACAGAAGTCACCTTGATTGATTGTTTTTTAGCCCTGTAAACCCCAAG--ACAGTCACGTATGGCTCCACGG
TATTAAGACCGAACATA-------GAACTATGAACGGGTTGTCCATTTCATCTGTTTCTCTGCTCCAGTATCCAATAATG
GCCACCACACAACAGGAACAGGACCCTATATATAGCGCGTAACCTCCAAATAATTCAATCCCATGGACTGCTGGTTTACA
TGGGAAGACCAACGGATGAAGATCACTTCCTTTAGTATAATCTCACCAAACTTTGTTTAGGAGT---TACTAGCACATAT
GCCCGTGCGTTGCAACGGAACAAAAAATAGCATGCATTTAAGTTGAGTGAGAA-TACACGTGCAAGTAAAACCTTGTG--
-ACG-CGGGAAGGAACCTTTAGATTCTGGGTTTCGCCGTGTGTGAAGTAATGAATCCGCTAACTTTTCATTCATTGATCG
AG
>chr6D_402
ACATATACG-----------------------------------------------------------------------
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---------GTGGGAAAATCTCGTTACAAGCGGCACCAATCAGCCTCCGGTCTAAAGATTAG-CATATAGGCGAAGCCCG
CGTCAACGTCCCAGGCTT----TCCCCCTCGCCTAAATCGCTCGTGTTGTCCCATGCGTGCCAAGTCCATGCTAGTGCAC
TACCCAAGGATGGACCGCACGTCCCTGCCACCACGCGGGCGTT----CTTACCAT-------------------------
CGCGTCACTCGTCCCCCGCGTTTTAACGACCT--GGGCACTGGGCAGCTTCCGCGCACGAGCCGAGCACGCACGCACGCA
CGCACGCCGGCCATTTCCCATGCCGAGAGACGTACGGCGAGCTCGT--------CCCGTGTCCCCTCCGTCCACCCCTCC
CCAACTCTTTCCGGTCCGCGTTATCCTCCACCAAAACCACGTGAAACTCTCCAA-CTCTGCTTCCTTCGCCATCTCTGC-
---------CGCTCTATATAACCAGCGAGCGCCCGCGCTTTCCTCCTGACTTTAGCTTAGATCAAGT-------------
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--------------------------------------------------------------------ACATATATCCTC
TGTTCCTCCCCCGCAAACGATA----GACAGGCCTGGCCGGCGCAGCCTGCGACGTTCGAGCTCCCGCCGCGCGTCCACG
CGTCGTCTCCGGCCATGGGGTTCCCCCTGGTGTGCTACTGCGTTGCCATCCCCAAGCCGGTCATCGCCTTCTGCAAGCTC
GTCGCCGCCGTCAGGGACGCCTTCCTCCTGCTGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCCGTGGACGA
CGCCCCGCTGCCCGAGGAGGTCAAGGAGCGCCTCCCGGCCGTCGAGTTCTCCTTGCTGGCGCGTCCGGCAA------AGC
AGGGGTGCCACGACGGGGACGACGACGTCGCCGCCGCGGCGGCCACGTGCATCGTGTGCCTGGAGAGGCTGCGGGCGGCG
GACGAGGTGCGGCGGCTGGGCAACTGCGCGCACGCCTTCCACCGCGGCTGCATCGACGGGTGGATCGACCTCGGCCGGAC
CACCTGCCCGCTGTGCCGCTCCCACCTGCTGCCCCGCGCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTT
GGTGACGACCAACCGCGCCACTCGTT----AGCTCGGAGGCCACGTCTTTCGTTGTCCCAGCGCGGTGGCGGCCGACACA
GAGATTCGCGATCTCGACCGGCTGCATGTATATTTAAAGATTGTGGGTTTACATCGTCTCAAAATCGGGATTTTATTTA-
-------GT------TTAGGGCGCCACTTTGTA---TAGCCATCCAATCAAGAGGTCACCAATAGGTGCACAAGCATAGT
TTTTTTTT--CGTAGAGAAGGATTAGTTGGTCCAATATATGCCTGGTCGTGTTTGGCTAGTGGATCTCGAAATGTCAACA
GCTCCAAAACGCATGTCGCTGTTCGACTTGTACAATCCCAGTCGTGGGACTACGACGTACAGTTGTA---TAACTCATAC
ACTTATGCTTCATTAAAAAAAAACTTGATGATTGTTTGCTGACCGAGTTTTAATTTTTTGGTTCCGTCTAGTACCTCAAT
TTGCAGTGGCCAATAGTGCGTGGGGAAGATTCTGGACACGAACATGTGCACATTC----------------------AGT
TCGGAAAAGACAGAAGTCACCTTAATTGATTGATTTTTAGCCCTATTAACGAGTTA------------------------
---------------------------------------TATCCATTTCCCCTGTTTCTCTGCT-------CCAATAATA
GTCACCACACAACAGGAACAGGACCCTATATATAGCGCGTAACCTCCAAATAATTCAATCTCATGGACTGCTGGTTTACA
TGGGAAGACCAACGGACGAA-ATCACTTCCTTTAGTGTAATATCACCAAACTTTGTTTAGTAGTTACTACTAGCACATAT
GCCAGTGCGTTATAACGGGACAAAAAATAACGTGCATTAAAATTTAGTGAGAA-TATATGTGCAAACAAAACCTTGTGTG
CACG-CAGGAAGGAACATTTAGATTCTGGGTTTCGCCGCGTGTGAAGTAATCAATCCGCTAACTTTCCATTCATTGATCG
AG
>chr6B_522
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-----------------------------------------TCGCGTTGTCCCATGCGTGCCAAGTCCATGCCAATGCAC
TACCGAAGGATGGACTGCACGTCCCTGCCACCACGCGGGCGTT----CAACAATTTGTACGGTATACGGGTTATTTCCGC
CGCGTCAGTCGTCCCTCGCGTTTTAACGACCT--G----CTAGGCAGCTTCCGCGCACGAGCCGAGCACGCC----CGCA
CGCCCGCCGGCCATTTCCCAT-------GACGTACGGCGAGCTCATTCCATTCGCCCGTGTCCCCTCCGTCCACCCCTCC
CCAACCCTTCCCGGTCCGCGTTATCCTCCACCAAAACCACGTGAAACTCTCCAAACTCTGCTTCCTTCGCTCTCTCTGC-
---------CGCTCTATATAACCTGCGAGCGCGCGCGCTTTCCTCCTGGCTCAGCTCGCTCGATCAAGCATATATATATA
TATATATATAGAGTTAAATGCACTGGAGGTCCTAAAAATTTCATCGGGGTGTCACTTTAGTCCTAATTCTTCCAAATTAC
ATTTTTAGGTCCTAATTCTTTAGTAAGTGGTTCACCCGAGGTCCTTTTTTCATGAGTGCTCGCTGACCTGCCCGCGTGGC
GCGTTGACCCATGCCACGTCAATACAGGGCCCAATCGCGTGGCGAGAGAAATACACTAGAGGTCCTAAAAGTTTCTGGAC
AGTATCACCTTAGTCCTACTTTTAAAATGCACGTTTAGGTCCTAATTCTATAGTAAGTGGTTCACCCGAGGTCCTTTTTT
GCAGCATCGCTCACTGACCTGCTCGGTTGCGCGTTGAACCATGCCAGGTCGACTTAACTTTTTGGCCGCTATCGTCCCGT
AGCTATGTGATTTCCTCTACTCTGCCACAATCACTAGCTGTAGGCATTGATTTAGTTCGATTTGCACTTTTTCATTAAGT
TTCTTAAACCGCTTGCTCTGATTTGAGGTTAGGTGATAGGAGCTTGTGGAGGAGGTGGTGCCGACGATGCTGCTGCAATG
CTCCCCTTCGTCACACGCTTCCCTACCGAGGAGCTTACCGTCCCAGCCATGGGGATGGTGTGGGCACGAGAGAGAGGGAG
AGGATTCCGGTAGGGGCTGGGAAATGTCAAGAGGGGGGGTTAACAAGGGGCTTTATGTAAAAAAAGAGCAACCGCAGCAG
CCTATAAGTTGACATGGTGTGGCTCAACTCGTCATGCGAGCAGGTCAGCAACCGCTCGTGCAAAAAAAGGGCCTCGGATG
AACCATTTACTATAGAATTAGGACCGAAACGTTCATTTTGAAAGAAGTGGGACTAAAGTGACACTGCGCAGAAACTTTTA
GGACGTTTCTCGCCTGGCGGTTGGGCCCTGTGTTGATGTGGCGCGGGTCAACGCGCCACGCAGGCAGGTCAATGAGCGTT
CGTGAAAAAAGAACCTCGGATGAACCACTTACTAAAGAATTAGGACCTAAATATGCATTTTGGAAGAATTGGGACTAAAG
TGACACCCCAACAAAACTTTTAGGACCTCCGGTGCATTTAACTCTCATATATATGTATATATATACAGACATACATCCTC
TCCTCCTCGTCCCGCCCGCAACAAACGACAGGCCTGGCCGGCGCAGCCTGCAACGTTCGAATTCCCGCCGCG----CACG
CGTCGCCTCCGGCCATGGGGTTCCCCCTGGTGTGCTACTGCGTCGCCATCCCCAAGCCGGTCATCGCCTTCTGCAAGCTC
GTCGCCGCCGTCAGGGACGCCCTCCTCCTGCTGCTCTCCCTCGTCGGCCTCTGCCGCTCCCCGCGCCGCTCTGTGGACGA
CGCCCCGCTGCCCGAGGAGGTCAAGGAGCGCCTCCCGGCCGTCGAGTTCGGCTGCCTGGCGCGTCCGGCGCAGCAGCAGC
AG------CACGACGGGGACGACGACGAGGTCGCCGCCGCGGCGACGTGCATCGTGTGCCTGGAGAGGCTGTGGGCGACG
GACGAGGTGCGGCGGCTGGGCAACTGCGCGCACGCCTTCCACCGGGGCTGCATCGACGGGTGGATCGACCTCGGCCGGAC
CACCTGCCCGCTGTGTCGCTCCCACCTACTGCCTCGCGCGCGGAGGGACGGCCCGCTCGCCAGCCTCCTCACGCGCGTTT
GGTGACGACCAACCGCGCCAG--GTT----AGCTCGAAGGCCACGTCTTTCGTTTTCCCAGCGCGGTGGCGGCCGACACA
GAGATTCGCGATCTCGACCGGCTGCATGTGTATTTAA----TGTGGGTTTACATCATCTCAAAATTGGGATTTTATTTA-
-------GCTTATTATTAGGGCGCCACTTTGTATAGTAGCCATCCAATCACGAGGTCACCAATAGGTGCATACGCATAGT
TTTTTCCCCCCGTAGAGAAGGATTCTTTGGTCGAACATATGTGTACTAGCGTTTGGTTAGTGGATCTCGAAATGTCAACA
GCTCCAAAACGCATGTTGCTGTTCGACTTGTACAATCCCAGTTGTGGGACTACGACGTACAGTTGTA---TAACTCATAC
ACTTATGCTTCAT--AAAAAAAGCTTGATGATTGTTTGCTGACCGAGTTTTAATTTTTTGGTTCCGTCTAGTACCTCAAT
TTGCAGTGGCCAATAGTGCGTGAGGGAGATTCTGGACACGAACATGTGCACATTCCGCACCTTAGTTAAGTCTACACAGT
TTGGAAAAGACAGAAGTCACCTTGTTTGATTGATTTTTAGCCCTATATAAACCCCAACACAGTCACGTATGGCTCCACGG
TATTAAGACCGAACATACAACATAGAACTATGAACGGGTTATCCATTTCATCTGTTTCTCTGCT-------CCAATAATA
GTCACCACACAACAGGAACCAACGGGAAG-----------AACCTCTAAATAATTCAATCCCATGGACTGCTGGTTTACA
TGGGAAGATCAACGGATGAA-ATCACTTA-TTTTGTGTAATCCCACCAAACTTTGTTTAGGAGT---TACTAGCACATAT
GCCCGTGCGTTGCAGCAGGAGAAAAAATAGTGTGCATTTAAATTTAGTGAGAATTATACGTGCAAGCAAAACTTTGTGTG
CACGTCAAGAAGGAACATTTAGGTTCTGGGTTTCGCCATATGTGAAGTAATCAATCCGCTAACTTTCCGTTCATTGATCG
AG
>SNPs
SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------S-------S---------------------------S-SSSSS-----S-----------
----------S-------SSSS----------------------------------------S-----------------
S------------------------S-----------------SSSS---------------------------------
-------------------------------SSS----------------------------------------------
-------S-----------------S---------------S--------------------------------------
--------------S---------------------------------SS--S--------------SSS--SS---SSS
SSSSSSSSS---------------------------------------------------S-------S-SS--------
S----SSSSS----------------------------------------------------------------------
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-----------------------------S--------------------------S-----------------------
-----------------------------------------------------------S--------------------
------------S-------------------------------------------------------------SS----
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----------------------------------S------------------------------S--------------
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-------------------------------------S------------------------------------------
--------------------------SSSS-----S---------------S----------------------------
--------------------------S----------------------------------------------------S
SSSSSSS-------------------------------------------------------------------------
--------S------------------S----S-----------------------------------------------
----S-S------------------------S--------S--------------------------SSS----------
SSSSS-SS-SSSS-S--------S-----------------S-S-------SS--------------S-S----S-----
------S--------S----S-S-----------------------------------------------S---------
--------------------------------S-----------S-----S--SSS------------------------
----------------------------------------S-----------------------SSSSSSS--------S
-S------------------------------------------------------------------------------
--------------------S---------------S-------------------------------------------
------------------S------------S---------S--S-----------S---------S-------------
------S---------S----------------------------------S--------------S-------------
--
>forward_501
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-GTCAACGTCGCAGGCTTTTT-----------------------------------------------------------
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--
>reverse_3587
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------------------------------------------------------------------TAAAACCTTGTGAC
GCGGGA--------------------------------------------------------------------------
--
