Multiple sequence alignment - TraesCS6A01G252000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G252000 chr6A 100.000 2393 0 0 1 2393 466484808 466482416 0.000000e+00 4420.0
1 TraesCS6A01G252000 chr6A 97.674 43 1 0 1685 1727 466483083 466483041 9.170000e-10 75.0
2 TraesCS6A01G252000 chr6A 97.674 43 1 0 1726 1768 466483124 466483082 9.170000e-10 75.0
3 TraesCS6A01G252000 chr6B 88.339 1758 108 43 1 1688 493983398 493985128 0.000000e+00 2021.0
4 TraesCS6A01G252000 chr6B 91.115 529 33 8 1726 2253 493985477 493985992 0.000000e+00 704.0
5 TraesCS6A01G252000 chr6B 90.566 53 3 2 2263 2314 504603144 504603093 4.270000e-08 69.4
6 TraesCS6A01G252000 chr6D 93.228 1137 43 14 598 1729 327373117 327372010 0.000000e+00 1642.0
7 TraesCS6A01G252000 chr6D 86.992 615 47 18 1 603 327373738 327373145 0.000000e+00 662.0
8 TraesCS6A01G252000 chr6D 89.773 528 30 15 1726 2246 327372054 327371544 0.000000e+00 654.0
9 TraesCS6A01G252000 chr6D 84.615 65 6 2 2254 2314 318806542 318806606 7.140000e-06 62.1
10 TraesCS6A01G252000 chr1B 92.593 54 1 2 2263 2315 587986303 587986354 9.170000e-10 75.0
11 TraesCS6A01G252000 chr2D 89.655 58 4 2 2259 2314 278367185 278367128 3.300000e-09 73.1
12 TraesCS6A01G252000 chr2A 89.655 58 4 2 2259 2314 320190903 320190960 3.300000e-09 73.1
13 TraesCS6A01G252000 chr3B 89.091 55 2 4 2243 2296 516636650 516636701 5.520000e-07 65.8
14 TraesCS6A01G252000 chr1A 87.719 57 3 4 2258 2311 505254933 505254988 1.990000e-06 63.9
15 TraesCS6A01G252000 chr2B 87.500 56 3 4 2262 2314 78098479 78098425 7.140000e-06 62.1
16 TraesCS6A01G252000 chr2B 86.207 58 6 2 2259 2314 313576652 313576595 7.140000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G252000 chr6A 466482416 466484808 2392 True 1523.333333 4420 98.449333 1 2393 3 chr6A.!!$R1 2392
1 TraesCS6A01G252000 chr6B 493983398 493985992 2594 False 1362.500000 2021 89.727000 1 2253 2 chr6B.!!$F1 2252
2 TraesCS6A01G252000 chr6D 327371544 327373738 2194 True 986.000000 1642 89.997667 1 2246 3 chr6D.!!$R1 2245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 273 0.032403 GCACGTACTACCACCACACA 59.968 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1665 0.179051 CAAGCTGATGGAGGAGGAGC 60.179 60.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.980233 GCACAGCCAGGTCACCAC 60.980 66.667 0.00 0.00 0.00 4.16
41 42 2.510411 CACAGCCAGGTCACCACA 59.490 61.111 0.00 0.00 0.00 4.17
88 89 1.000843 GAAAGGGACACCAATGGCAAC 59.999 52.381 0.00 0.00 40.13 4.17
89 90 4.189539 GGGACACCAATGGCAACA 57.810 55.556 0.00 0.00 45.19 3.33
119 126 0.740516 TGCGATCGAGCATTGCAGAA 60.741 50.000 21.57 0.00 45.71 3.02
150 157 2.481185 CTGCATTTCAAAACCATGCACC 59.519 45.455 1.95 0.00 46.53 5.01
173 184 2.826777 AATTCGCCAGCACCTCCAGG 62.827 60.000 0.00 0.00 42.17 4.45
186 197 4.227134 CCAGGCTCCGCGCTATGT 62.227 66.667 5.56 0.00 39.13 2.29
202 213 6.038985 GCGCTATGTGATCATACATACATCT 58.961 40.000 0.00 0.00 41.31 2.90
226 237 7.333672 TCTCTACACTACACAGTACACATACAG 59.666 40.741 0.00 0.00 33.30 2.74
228 239 8.096414 TCTACACTACACAGTACACATACAGTA 58.904 37.037 0.00 0.00 30.44 2.74
259 273 0.032403 GCACGTACTACCACCACACA 59.968 55.000 0.00 0.00 0.00 3.72
273 287 1.393539 CCACACAATCACGATCGAACC 59.606 52.381 24.34 0.00 0.00 3.62
279 293 3.383505 ACAATCACGATCGAACCTATCCA 59.616 43.478 24.34 0.00 0.00 3.41
301 322 0.918983 TAGCAAGAGGGAACATGGGG 59.081 55.000 0.00 0.00 0.00 4.96
302 323 1.380380 GCAAGAGGGAACATGGGGG 60.380 63.158 0.00 0.00 0.00 5.40
320 341 1.535204 GGGGTCATTGTTGTGGCCAG 61.535 60.000 5.11 0.00 45.78 4.85
398 419 1.212229 GGTCGTCGAGTTGGAGTCC 59.788 63.158 0.73 0.73 0.00 3.85
497 518 3.272574 TGTGAGGCATCCATTTCTCTC 57.727 47.619 0.00 0.00 0.00 3.20
498 519 2.092753 TGTGAGGCATCCATTTCTCTCC 60.093 50.000 0.00 0.00 0.00 3.71
509 530 2.550830 TTTCTCTCCTCAACTGCCAC 57.449 50.000 0.00 0.00 0.00 5.01
539 560 2.678336 GTCTCGGTCCCATGATTGTTTC 59.322 50.000 0.00 0.00 0.00 2.78
594 615 8.498054 ACCATTCTGTAAATCTATTGACAGTG 57.502 34.615 16.43 10.33 45.50 3.66
595 616 7.066284 ACCATTCTGTAAATCTATTGACAGTGC 59.934 37.037 16.43 0.00 45.50 4.40
596 617 7.281774 CCATTCTGTAAATCTATTGACAGTGCT 59.718 37.037 16.43 4.13 45.50 4.40
607 661 7.988737 TCTATTGACAGTGCTATTGATTTTGG 58.011 34.615 0.00 0.00 0.00 3.28
620 674 7.339466 GCTATTGATTTTGGGAGAAGAAAGGTA 59.661 37.037 0.00 0.00 0.00 3.08
621 675 9.413734 CTATTGATTTTGGGAGAAGAAAGGTAT 57.586 33.333 0.00 0.00 0.00 2.73
622 676 7.466746 TTGATTTTGGGAGAAGAAAGGTATG 57.533 36.000 0.00 0.00 0.00 2.39
623 677 5.951747 TGATTTTGGGAGAAGAAAGGTATGG 59.048 40.000 0.00 0.00 0.00 2.74
624 678 4.316025 TTTGGGAGAAGAAAGGTATGGG 57.684 45.455 0.00 0.00 0.00 4.00
625 679 3.214694 TGGGAGAAGAAAGGTATGGGA 57.785 47.619 0.00 0.00 0.00 4.37
721 775 1.228154 GACCTGGGGTGGTGTGTTC 60.228 63.158 0.00 0.00 41.00 3.18
772 834 3.219198 GCAAGGCCCCTAATGCGG 61.219 66.667 0.00 0.00 0.00 5.69
859 921 1.881973 TGCTTTAGCCTTTCTGCTGTG 59.118 47.619 0.00 0.00 42.77 3.66
883 945 1.446272 CAAGGAACGTCGGAGGAGC 60.446 63.158 4.48 0.00 0.00 4.70
900 962 1.811679 GCAAGGACTGAGCGCTACC 60.812 63.158 11.50 12.12 0.00 3.18
1005 1081 4.950062 GCGGCGAGATCGATGGCA 62.950 66.667 12.98 0.00 43.02 4.92
1478 1560 2.597455 AGGTTGGGTTTTGATCACCTG 58.403 47.619 0.00 0.00 34.36 4.00
1490 1572 2.295885 GATCACCTGCTGCTAAATGCT 58.704 47.619 0.00 0.00 43.37 3.79
1491 1573 3.118298 TGATCACCTGCTGCTAAATGCTA 60.118 43.478 0.00 0.00 43.37 3.49
1492 1574 2.632377 TCACCTGCTGCTAAATGCTAC 58.368 47.619 0.00 0.00 43.37 3.58
1493 1575 2.237143 TCACCTGCTGCTAAATGCTACT 59.763 45.455 0.00 0.00 43.37 2.57
1494 1576 2.611292 CACCTGCTGCTAAATGCTACTC 59.389 50.000 0.00 0.00 43.37 2.59
1495 1577 1.863454 CCTGCTGCTAAATGCTACTCG 59.137 52.381 0.00 0.00 43.37 4.18
1527 1612 5.639082 TGTATGTGTACAGTGCTCTTGATTG 59.361 40.000 0.00 0.00 35.94 2.67
1560 1645 8.727910 GTTCCTTAACTATGAGGGTTAAACTTG 58.272 37.037 0.00 0.00 38.25 3.16
1580 1665 0.830648 TGCTGGTTAATCCTCCTCCG 59.169 55.000 0.00 0.00 37.07 4.63
1660 1753 3.057174 ACAGATGAAGAACGAGAGGTGAC 60.057 47.826 0.00 0.00 0.00 3.67
1668 1761 2.116827 ACGAGAGGTGACCTGACTAG 57.883 55.000 9.89 3.68 31.76 2.57
1695 1788 5.250235 CAAGAGCTGCATTCATCTGAAAT 57.750 39.130 1.02 0.00 37.61 2.17
1697 1790 6.200100 CAAGAGCTGCATTCATCTGAAATAC 58.800 40.000 1.02 0.00 37.61 1.89
1698 1791 5.682659 AGAGCTGCATTCATCTGAAATACT 58.317 37.500 1.02 0.00 37.61 2.12
1699 1792 6.120905 AGAGCTGCATTCATCTGAAATACTT 58.879 36.000 1.02 0.00 37.61 2.24
1700 1793 6.602406 AGAGCTGCATTCATCTGAAATACTTT 59.398 34.615 1.02 0.00 37.61 2.66
1701 1794 6.793349 AGCTGCATTCATCTGAAATACTTTC 58.207 36.000 1.02 0.00 37.61 2.62
1703 1796 6.471519 GCTGCATTCATCTGAAATACTTTCAC 59.528 38.462 0.00 0.00 44.21 3.18
1704 1797 6.855836 TGCATTCATCTGAAATACTTTCACC 58.144 36.000 0.00 0.00 44.21 4.02
1706 1799 7.123098 TGCATTCATCTGAAATACTTTCACCAT 59.877 33.333 0.00 0.00 44.21 3.55
1707 1800 7.646922 GCATTCATCTGAAATACTTTCACCATC 59.353 37.037 0.00 0.00 44.21 3.51
1709 1802 7.854557 TCATCTGAAATACTTTCACCATCTG 57.145 36.000 0.00 0.00 44.21 2.90
1710 1803 6.317140 TCATCTGAAATACTTTCACCATCTGC 59.683 38.462 0.00 0.00 44.21 4.26
1711 1804 5.809001 TCTGAAATACTTTCACCATCTGCT 58.191 37.500 0.00 0.00 44.21 4.24
1713 1806 7.568349 TCTGAAATACTTTCACCATCTGCTAT 58.432 34.615 0.00 0.00 44.21 2.97
1714 1807 7.496920 TCTGAAATACTTTCACCATCTGCTATG 59.503 37.037 0.00 0.00 44.21 2.23
1715 1808 7.112122 TGAAATACTTTCACCATCTGCTATGT 58.888 34.615 0.00 0.00 44.21 2.29
1716 1809 6.932356 AATACTTTCACCATCTGCTATGTG 57.068 37.500 0.00 0.00 0.00 3.21
1718 1811 4.005650 ACTTTCACCATCTGCTATGTGTG 58.994 43.478 11.41 11.41 0.00 3.82
1723 1816 3.057386 CACCATCTGCTATGTGTGCAAAA 60.057 43.478 0.00 0.00 40.13 2.44
1724 1817 3.192001 ACCATCTGCTATGTGTGCAAAAG 59.808 43.478 0.00 0.00 40.13 2.27
1745 2149 9.185192 CAAAAGTTCATCTGAAATACTTTCACC 57.815 33.333 11.96 0.00 44.21 4.02
1768 2172 5.396484 CATCTGCTATGTGTGGAAAAGTTG 58.604 41.667 0.00 0.00 0.00 3.16
1793 2197 0.741326 TAAAAACAAGTGCTGCCGCA 59.259 45.000 0.00 0.00 45.60 5.69
1807 2211 1.345089 TGCCGCAGTCAGGTTAAACTA 59.655 47.619 0.00 0.00 0.00 2.24
1808 2212 2.027561 TGCCGCAGTCAGGTTAAACTAT 60.028 45.455 0.00 0.00 0.00 2.12
1849 2253 1.813513 CTGGACTGTGCTACTTTGGG 58.186 55.000 0.00 0.00 0.00 4.12
1858 2271 1.686052 TGCTACTTTGGGTGCCTTTTG 59.314 47.619 0.00 0.00 0.00 2.44
2003 2418 6.043327 TGTGTGTCACATTAAAGAAACGAG 57.957 37.500 9.31 0.00 39.62 4.18
2006 2421 5.050363 TGTGTCACATTAAAGAAACGAGCTC 60.050 40.000 2.73 2.73 0.00 4.09
2010 2425 3.009143 ACATTAAAGAAACGAGCTCCCCT 59.991 43.478 8.47 0.00 0.00 4.79
2031 2446 4.520492 CCTTTGTTGTTTCTGCTATCCACT 59.480 41.667 0.00 0.00 0.00 4.00
2032 2447 5.705441 CCTTTGTTGTTTCTGCTATCCACTA 59.295 40.000 0.00 0.00 0.00 2.74
2033 2448 6.348540 CCTTTGTTGTTTCTGCTATCCACTAC 60.349 42.308 0.00 0.00 0.00 2.73
2034 2449 5.483685 TGTTGTTTCTGCTATCCACTACT 57.516 39.130 0.00 0.00 0.00 2.57
2035 2450 5.237815 TGTTGTTTCTGCTATCCACTACTG 58.762 41.667 0.00 0.00 0.00 2.74
2074 2489 1.211969 CATGCTGTGGCTGCTGTTC 59.788 57.895 0.00 0.00 39.59 3.18
2165 2580 9.154847 CAAGACCTGTTTCTTTTTCTGAATTTT 57.845 29.630 0.00 0.00 33.31 1.82
2174 2589 1.173043 TTCTGAATTTTCGCGCCCAT 58.827 45.000 0.00 0.00 0.00 4.00
2175 2590 0.451383 TCTGAATTTTCGCGCCCATG 59.549 50.000 0.00 0.00 0.00 3.66
2176 2591 0.451383 CTGAATTTTCGCGCCCATGA 59.549 50.000 0.00 0.00 0.00 3.07
2208 2623 5.059833 AGCATAACTTATCAAGCAGCCTAC 58.940 41.667 0.00 0.00 0.00 3.18
2221 2636 5.832539 AGCAGCCTACTGTAAATCCATAT 57.167 39.130 0.00 0.00 46.30 1.78
2261 2676 6.633500 CAAAATTGGACTGTAACTTCTCCA 57.367 37.500 0.00 0.00 0.00 3.86
2262 2677 7.219484 CAAAATTGGACTGTAACTTCTCCAT 57.781 36.000 0.00 0.00 32.75 3.41
2263 2678 8.335532 CAAAATTGGACTGTAACTTCTCCATA 57.664 34.615 0.00 0.00 32.75 2.74
2264 2679 8.792633 CAAAATTGGACTGTAACTTCTCCATAA 58.207 33.333 0.00 0.00 32.75 1.90
2265 2680 8.934023 AAATTGGACTGTAACTTCTCCATAAA 57.066 30.769 0.00 0.00 32.75 1.40
2266 2681 8.567285 AATTGGACTGTAACTTCTCCATAAAG 57.433 34.615 0.00 0.00 32.75 1.85
2267 2682 6.928348 TGGACTGTAACTTCTCCATAAAGA 57.072 37.500 0.00 0.00 0.00 2.52
2268 2683 7.311092 TGGACTGTAACTTCTCCATAAAGAA 57.689 36.000 0.00 0.00 34.22 2.52
2269 2684 7.741785 TGGACTGTAACTTCTCCATAAAGAAA 58.258 34.615 0.00 0.00 34.95 2.52
2270 2685 8.383175 TGGACTGTAACTTCTCCATAAAGAAAT 58.617 33.333 0.00 0.00 34.95 2.17
2271 2686 9.886132 GGACTGTAACTTCTCCATAAAGAAATA 57.114 33.333 0.00 0.00 34.95 1.40
2279 2694 9.482627 ACTTCTCCATAAAGAAATATAAGAGCG 57.517 33.333 0.00 0.00 34.95 5.03
2280 2695 9.482627 CTTCTCCATAAAGAAATATAAGAGCGT 57.517 33.333 0.00 0.00 34.95 5.07
2281 2696 9.832445 TTCTCCATAAAGAAATATAAGAGCGTT 57.168 29.630 0.00 0.00 32.42 4.84
2282 2697 9.832445 TCTCCATAAAGAAATATAAGAGCGTTT 57.168 29.630 0.00 0.00 0.00 3.60
2299 2714 9.654663 AAGAGCGTTTAGATCATTACTTACTTT 57.345 29.630 0.00 0.00 37.82 2.66
2300 2715 9.088512 AGAGCGTTTAGATCATTACTTACTTTG 57.911 33.333 0.00 0.00 37.82 2.77
2301 2716 7.685594 AGCGTTTAGATCATTACTTACTTTGC 58.314 34.615 0.00 0.00 0.00 3.68
2302 2717 7.333423 AGCGTTTAGATCATTACTTACTTTGCA 59.667 33.333 0.00 0.00 0.00 4.08
2303 2718 7.636359 GCGTTTAGATCATTACTTACTTTGCAG 59.364 37.037 0.00 0.00 0.00 4.41
2304 2719 8.869897 CGTTTAGATCATTACTTACTTTGCAGA 58.130 33.333 0.00 0.00 0.00 4.26
2306 2721 8.948631 TTAGATCATTACTTACTTTGCAGAGG 57.051 34.615 9.34 0.00 0.00 3.69
2307 2722 7.187824 AGATCATTACTTACTTTGCAGAGGA 57.812 36.000 9.34 0.00 0.00 3.71
2308 2723 7.271511 AGATCATTACTTACTTTGCAGAGGAG 58.728 38.462 9.34 8.52 0.00 3.69
2309 2724 6.360370 TCATTACTTACTTTGCAGAGGAGT 57.640 37.500 16.19 16.19 0.00 3.85
2310 2725 7.476540 TCATTACTTACTTTGCAGAGGAGTA 57.523 36.000 9.34 12.60 0.00 2.59
2311 2726 7.548097 TCATTACTTACTTTGCAGAGGAGTAG 58.452 38.462 16.70 5.17 0.00 2.57
2312 2727 6.912951 TTACTTACTTTGCAGAGGAGTAGT 57.087 37.500 16.70 9.77 0.00 2.73
2313 2728 8.467598 CATTACTTACTTTGCAGAGGAGTAGTA 58.532 37.037 16.70 8.98 0.00 1.82
2314 2729 8.591114 TTACTTACTTTGCAGAGGAGTAGTAT 57.409 34.615 16.70 5.47 0.00 2.12
2315 2730 7.483580 ACTTACTTTGCAGAGGAGTAGTATT 57.516 36.000 9.34 0.00 0.00 1.89
2316 2731 7.908453 ACTTACTTTGCAGAGGAGTAGTATTT 58.092 34.615 9.34 0.00 0.00 1.40
2317 2732 8.376270 ACTTACTTTGCAGAGGAGTAGTATTTT 58.624 33.333 9.34 0.00 0.00 1.82
2318 2733 8.773404 TTACTTTGCAGAGGAGTAGTATTTTC 57.227 34.615 9.34 0.00 0.00 2.29
2319 2734 5.869888 ACTTTGCAGAGGAGTAGTATTTTCG 59.130 40.000 9.34 0.00 0.00 3.46
2320 2735 3.782046 TGCAGAGGAGTAGTATTTTCGC 58.218 45.455 0.00 0.00 0.00 4.70
2321 2736 3.447586 TGCAGAGGAGTAGTATTTTCGCT 59.552 43.478 0.00 0.00 0.00 4.93
2322 2737 4.081642 TGCAGAGGAGTAGTATTTTCGCTT 60.082 41.667 0.00 0.00 0.00 4.68
2323 2738 4.504826 GCAGAGGAGTAGTATTTTCGCTTC 59.495 45.833 0.00 0.00 0.00 3.86
2324 2739 4.735822 CAGAGGAGTAGTATTTTCGCTTCG 59.264 45.833 0.00 0.00 0.00 3.79
2325 2740 3.445857 AGGAGTAGTATTTTCGCTTCGC 58.554 45.455 0.00 0.00 0.00 4.70
2326 2741 3.119245 AGGAGTAGTATTTTCGCTTCGCA 60.119 43.478 0.00 0.00 0.00 5.10
2327 2742 3.243177 GGAGTAGTATTTTCGCTTCGCAG 59.757 47.826 0.00 0.00 0.00 5.18
2328 2743 2.603560 AGTAGTATTTTCGCTTCGCAGC 59.396 45.455 0.00 0.00 43.41 5.25
2345 2760 3.043635 CAGCATGCTAACAATCGTGAC 57.956 47.619 22.19 0.00 0.00 3.67
2346 2761 2.674852 CAGCATGCTAACAATCGTGACT 59.325 45.455 22.19 0.00 0.00 3.41
2347 2762 2.674852 AGCATGCTAACAATCGTGACTG 59.325 45.455 21.21 0.00 0.00 3.51
2348 2763 2.672874 GCATGCTAACAATCGTGACTGA 59.327 45.455 11.37 0.00 0.00 3.41
2349 2764 3.125146 GCATGCTAACAATCGTGACTGAA 59.875 43.478 11.37 0.00 0.00 3.02
2350 2765 4.378356 GCATGCTAACAATCGTGACTGAAA 60.378 41.667 11.37 0.00 0.00 2.69
2351 2766 4.725556 TGCTAACAATCGTGACTGAAAC 57.274 40.909 0.00 0.00 0.00 2.78
2352 2767 3.496884 TGCTAACAATCGTGACTGAAACC 59.503 43.478 0.00 0.00 0.00 3.27
2353 2768 3.496884 GCTAACAATCGTGACTGAAACCA 59.503 43.478 0.00 0.00 0.00 3.67
2354 2769 4.154195 GCTAACAATCGTGACTGAAACCAT 59.846 41.667 0.00 0.00 0.00 3.55
2355 2770 5.334879 GCTAACAATCGTGACTGAAACCATT 60.335 40.000 0.00 0.00 0.00 3.16
2356 2771 4.749245 ACAATCGTGACTGAAACCATTC 57.251 40.909 0.00 0.00 36.04 2.67
2357 2772 3.186409 ACAATCGTGACTGAAACCATTCG 59.814 43.478 0.00 0.00 38.46 3.34
2358 2773 1.790755 TCGTGACTGAAACCATTCGG 58.209 50.000 0.00 0.00 45.71 4.30
2359 2774 1.341852 TCGTGACTGAAACCATTCGGA 59.658 47.619 4.50 0.00 43.43 4.55
2360 2775 1.459592 CGTGACTGAAACCATTCGGAC 59.540 52.381 4.50 0.00 43.43 4.79
2361 2776 1.459592 GTGACTGAAACCATTCGGACG 59.540 52.381 4.50 0.00 43.43 4.79
2362 2777 1.076332 GACTGAAACCATTCGGACGG 58.924 55.000 4.50 0.00 43.43 4.79
2363 2778 0.321298 ACTGAAACCATTCGGACGGG 60.321 55.000 4.50 0.00 43.43 5.28
2364 2779 0.321298 CTGAAACCATTCGGACGGGT 60.321 55.000 0.00 0.00 43.43 5.28
2365 2780 0.604243 TGAAACCATTCGGACGGGTG 60.604 55.000 0.90 0.00 38.46 4.61
2366 2781 0.604511 GAAACCATTCGGACGGGTGT 60.605 55.000 0.90 0.00 34.51 4.16
2367 2782 0.887387 AAACCATTCGGACGGGTGTG 60.887 55.000 0.90 0.00 34.51 3.82
2368 2783 1.760479 AACCATTCGGACGGGTGTGA 61.760 55.000 0.90 0.00 34.51 3.58
2369 2784 1.740296 CCATTCGGACGGGTGTGAC 60.740 63.158 0.00 0.00 0.00 3.67
2370 2785 1.005512 CATTCGGACGGGTGTGACA 60.006 57.895 0.00 0.00 0.00 3.58
2371 2786 1.014044 CATTCGGACGGGTGTGACAG 61.014 60.000 0.00 0.00 0.00 3.51
2372 2787 2.781595 ATTCGGACGGGTGTGACAGC 62.782 60.000 6.17 6.17 0.00 4.40
2373 2788 3.991051 CGGACGGGTGTGACAGCT 61.991 66.667 14.88 0.00 31.98 4.24
2374 2789 2.426023 GGACGGGTGTGACAGCTT 59.574 61.111 14.88 1.88 31.98 3.74
2375 2790 1.227853 GGACGGGTGTGACAGCTTT 60.228 57.895 14.88 1.50 31.98 3.51
2376 2791 0.034337 GGACGGGTGTGACAGCTTTA 59.966 55.000 14.88 0.00 31.98 1.85
2377 2792 1.541670 GGACGGGTGTGACAGCTTTAA 60.542 52.381 14.88 0.00 31.98 1.52
2378 2793 2.423577 GACGGGTGTGACAGCTTTAAT 58.576 47.619 14.88 0.00 31.98 1.40
2379 2794 2.415512 GACGGGTGTGACAGCTTTAATC 59.584 50.000 14.88 2.25 31.98 1.75
2380 2795 2.038557 ACGGGTGTGACAGCTTTAATCT 59.961 45.455 14.88 0.00 31.98 2.40
2381 2796 3.074412 CGGGTGTGACAGCTTTAATCTT 58.926 45.455 14.88 0.00 31.98 2.40
2382 2797 3.502211 CGGGTGTGACAGCTTTAATCTTT 59.498 43.478 14.88 0.00 31.98 2.52
2383 2798 4.023193 CGGGTGTGACAGCTTTAATCTTTT 60.023 41.667 14.88 0.00 31.98 2.27
2384 2799 5.507315 CGGGTGTGACAGCTTTAATCTTTTT 60.507 40.000 14.88 0.00 31.98 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.472878 TCGGAACTGAATCCTCTCGTG 59.527 52.381 0.00 0.00 37.34 4.35
41 42 1.835494 TCGGAACTGAATCCTCTCGT 58.165 50.000 0.00 0.00 37.34 4.18
88 89 1.142748 GATCGCAGTCTCTGGGGTG 59.857 63.158 12.47 0.00 43.27 4.61
89 90 2.418910 CGATCGCAGTCTCTGGGGT 61.419 63.158 0.26 6.63 43.27 4.95
92 93 1.299014 GCTCGATCGCAGTCTCTGG 60.299 63.158 11.09 0.00 31.21 3.86
95 96 0.851495 CAATGCTCGATCGCAGTCTC 59.149 55.000 11.09 0.00 44.10 3.36
119 126 0.543277 TGAAATGCAGGAGGCTCGAT 59.457 50.000 8.69 0.00 45.15 3.59
150 157 1.766143 GAGGTGCTGGCGAATTAGCG 61.766 60.000 4.38 0.00 42.74 4.26
173 184 1.402852 TATGATCACATAGCGCGGAGC 60.403 52.381 8.83 0.00 43.57 4.70
179 190 7.479150 AGAGATGTATGTATGATCACATAGCG 58.521 38.462 0.00 0.00 41.00 4.26
186 197 9.793259 TGTAGTGTAGAGATGTATGTATGATCA 57.207 33.333 0.00 0.00 0.00 2.92
202 213 6.938596 ACTGTATGTGTACTGTGTAGTGTAGA 59.061 38.462 0.00 0.00 40.25 2.59
226 237 2.010145 ACGTGCATCCTCACATGTAC 57.990 50.000 0.00 0.00 36.37 2.90
228 239 1.550524 AGTACGTGCATCCTCACATGT 59.449 47.619 6.38 0.00 39.31 3.21
235 249 0.822164 GGTGGTAGTACGTGCATCCT 59.178 55.000 6.38 0.00 0.00 3.24
259 273 3.889538 TCTGGATAGGTTCGATCGTGATT 59.110 43.478 15.94 2.78 0.00 2.57
273 287 4.590647 TGTTCCCTCTTGCTATCTGGATAG 59.409 45.833 11.93 11.93 42.76 2.08
279 293 2.441001 CCCATGTTCCCTCTTGCTATCT 59.559 50.000 0.00 0.00 0.00 1.98
301 322 1.532794 TGGCCACAACAATGACCCC 60.533 57.895 0.00 0.00 0.00 4.95
302 323 1.535204 CCTGGCCACAACAATGACCC 61.535 60.000 0.00 0.00 0.00 4.46
320 341 3.351416 GTTTGACACGGACGCCCC 61.351 66.667 0.00 0.00 0.00 5.80
324 345 2.544359 CGCAGTTTGACACGGACG 59.456 61.111 0.00 0.00 0.00 4.79
398 419 1.062002 GTGTTATCACAACGCGATGGG 59.938 52.381 20.87 17.26 43.37 4.00
509 530 0.529992 GGGACCGAGACTTATTGCCG 60.530 60.000 0.00 0.00 0.00 5.69
554 575 7.944729 ACAGAATGGTAAACAAATGCTCTAT 57.055 32.000 0.00 0.00 43.62 1.98
588 609 4.943705 TCTCCCAAAATCAATAGCACTGTC 59.056 41.667 0.00 0.00 0.00 3.51
593 614 6.153340 CCTTTCTTCTCCCAAAATCAATAGCA 59.847 38.462 0.00 0.00 0.00 3.49
594 615 6.153510 ACCTTTCTTCTCCCAAAATCAATAGC 59.846 38.462 0.00 0.00 0.00 2.97
595 616 7.709149 ACCTTTCTTCTCCCAAAATCAATAG 57.291 36.000 0.00 0.00 0.00 1.73
596 617 9.189156 CATACCTTTCTTCTCCCAAAATCAATA 57.811 33.333 0.00 0.00 0.00 1.90
606 660 3.181439 CCATCCCATACCTTTCTTCTCCC 60.181 52.174 0.00 0.00 0.00 4.30
607 661 3.181439 CCCATCCCATACCTTTCTTCTCC 60.181 52.174 0.00 0.00 0.00 3.71
620 674 2.911143 GCGTCTGTCCCATCCCAT 59.089 61.111 0.00 0.00 0.00 4.00
621 675 3.770040 CGCGTCTGTCCCATCCCA 61.770 66.667 0.00 0.00 0.00 4.37
623 677 4.451150 TGCGCGTCTGTCCCATCC 62.451 66.667 8.43 0.00 0.00 3.51
624 678 3.188786 GTGCGCGTCTGTCCCATC 61.189 66.667 8.43 0.00 0.00 3.51
625 679 3.649277 GAGTGCGCGTCTGTCCCAT 62.649 63.158 8.43 0.00 0.00 4.00
636 690 2.393768 CCACCTGTGATGAGTGCGC 61.394 63.158 0.00 0.00 0.00 6.09
709 763 1.301479 GTCTCCGAACACACCACCC 60.301 63.158 0.00 0.00 0.00 4.61
721 775 2.046892 CAGCCCCAACTGTCTCCG 60.047 66.667 0.00 0.00 32.78 4.63
772 834 4.398319 ACATGCTTATATACTGGTTGGGC 58.602 43.478 0.00 0.00 0.00 5.36
804 866 2.526120 GCGGGCTGTCGAGTAATGC 61.526 63.158 0.00 0.00 0.00 3.56
859 921 2.556287 CGACGTTCCTTGCAAGCC 59.444 61.111 21.43 9.63 0.00 4.35
883 945 0.737715 GTGGTAGCGCTCAGTCCTTG 60.738 60.000 16.34 0.00 0.00 3.61
934 997 4.404654 CGCAAGCAAACGAGCCCC 62.405 66.667 0.00 0.00 34.23 5.80
936 999 4.404654 CCCGCAAGCAAACGAGCC 62.405 66.667 0.00 0.00 34.23 4.70
985 1061 3.094058 CATCGATCTCGCCGCGAC 61.094 66.667 12.39 1.15 39.60 5.19
1005 1081 1.360393 TGGGGAAGAAGCACCTGGTT 61.360 55.000 0.00 0.00 38.61 3.67
1317 1399 2.519780 ATCCGCCTCGTCTCCTCC 60.520 66.667 0.00 0.00 0.00 4.30
1361 1443 2.765807 CGGGGATGCTCTGGAGGT 60.766 66.667 0.00 0.00 0.00 3.85
1478 1560 5.277876 TCTACTACGAGTAGCATTTAGCAGC 60.278 44.000 9.94 0.00 45.93 5.25
1490 1572 8.200120 ACTGTACACATACATCTACTACGAGTA 58.800 37.037 0.00 0.00 40.57 2.59
1491 1573 7.011202 CACTGTACACATACATCTACTACGAGT 59.989 40.741 0.00 0.00 40.57 4.18
1492 1574 7.345943 CACTGTACACATACATCTACTACGAG 58.654 42.308 0.00 0.00 40.57 4.18
1493 1575 6.238293 GCACTGTACACATACATCTACTACGA 60.238 42.308 0.00 0.00 40.57 3.43
1494 1576 5.907945 GCACTGTACACATACATCTACTACG 59.092 44.000 0.00 0.00 40.57 3.51
1495 1577 7.012515 AGAGCACTGTACACATACATCTACTAC 59.987 40.741 0.00 0.00 40.57 2.73
1527 1612 5.429130 CCTCATAGTTAAGGAACAGGAACC 58.571 45.833 0.00 0.00 38.10 3.62
1560 1645 1.473434 CGGAGGAGGATTAACCAGCAC 60.473 57.143 0.00 0.00 42.04 4.40
1580 1665 0.179051 CAAGCTGATGGAGGAGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
1647 1740 1.249407 AGTCAGGTCACCTCTCGTTC 58.751 55.000 0.00 0.00 0.00 3.95
1650 1743 2.404923 TCTAGTCAGGTCACCTCTCG 57.595 55.000 0.00 0.00 0.00 4.04
1660 1753 3.196463 CAGCTCTTGCATTCTAGTCAGG 58.804 50.000 0.00 0.00 42.74 3.86
1692 1785 6.886459 ACACATAGCAGATGGTGAAAGTATTT 59.114 34.615 0.00 0.00 43.98 1.40
1695 1788 5.178061 CACACATAGCAGATGGTGAAAGTA 58.822 41.667 11.47 0.00 35.33 2.24
1697 1790 3.181503 GCACACATAGCAGATGGTGAAAG 60.182 47.826 16.96 4.36 35.33 2.62
1698 1791 2.749076 GCACACATAGCAGATGGTGAAA 59.251 45.455 16.96 0.00 35.33 2.69
1699 1792 2.290197 TGCACACATAGCAGATGGTGAA 60.290 45.455 16.96 9.13 37.02 3.18
1700 1793 1.278699 TGCACACATAGCAGATGGTGA 59.721 47.619 16.96 6.46 37.02 4.02
1701 1794 1.741528 TGCACACATAGCAGATGGTG 58.258 50.000 12.10 12.10 37.02 4.17
1703 1796 3.192001 ACTTTTGCACACATAGCAGATGG 59.808 43.478 3.92 0.00 43.75 3.51
1704 1797 4.430137 ACTTTTGCACACATAGCAGATG 57.570 40.909 0.00 0.00 43.75 2.90
1706 1799 3.882288 TGAACTTTTGCACACATAGCAGA 59.118 39.130 0.00 0.00 43.75 4.26
1707 1800 4.227512 TGAACTTTTGCACACATAGCAG 57.772 40.909 0.00 0.00 43.75 4.24
1709 1802 4.855388 CAGATGAACTTTTGCACACATAGC 59.145 41.667 0.00 0.00 0.00 2.97
1710 1803 6.245115 TCAGATGAACTTTTGCACACATAG 57.755 37.500 0.00 0.00 0.00 2.23
1711 1804 6.631971 TTCAGATGAACTTTTGCACACATA 57.368 33.333 0.00 0.00 0.00 2.29
1713 1806 4.979943 TTCAGATGAACTTTTGCACACA 57.020 36.364 0.00 0.00 0.00 3.72
1714 1807 7.141363 AGTATTTCAGATGAACTTTTGCACAC 58.859 34.615 0.00 0.00 33.13 3.82
1715 1808 7.275888 AGTATTTCAGATGAACTTTTGCACA 57.724 32.000 0.00 0.00 33.13 4.57
1716 1809 8.579682 AAAGTATTTCAGATGAACTTTTGCAC 57.420 30.769 5.65 0.00 27.08 4.57
1745 2149 5.181811 TCAACTTTTCCACACATAGCAGATG 59.818 40.000 0.00 0.00 0.00 2.90
1768 2172 3.304726 GGCAGCACTTGTTTTTACTCCTC 60.305 47.826 0.00 0.00 0.00 3.71
1793 2197 9.623000 ACAGTTTACAAATAGTTTAACCTGACT 57.377 29.630 8.32 0.00 0.00 3.41
1798 2202 7.944061 ACCCACAGTTTACAAATAGTTTAACC 58.056 34.615 0.00 0.00 0.00 2.85
1807 2211 3.316868 CCACGAACCCACAGTTTACAAAT 59.683 43.478 0.00 0.00 39.40 2.32
1808 2212 2.683867 CCACGAACCCACAGTTTACAAA 59.316 45.455 0.00 0.00 39.40 2.83
1849 2253 1.134946 ACACAACAGCTCAAAAGGCAC 59.865 47.619 0.00 0.00 0.00 5.01
1858 2271 2.099756 AGGCAAAAGAACACAACAGCTC 59.900 45.455 0.00 0.00 0.00 4.09
1912 2325 2.620585 ACTCCTAACGACCCGCTAATAC 59.379 50.000 0.00 0.00 0.00 1.89
1913 2326 2.936202 ACTCCTAACGACCCGCTAATA 58.064 47.619 0.00 0.00 0.00 0.98
1914 2327 1.772836 ACTCCTAACGACCCGCTAAT 58.227 50.000 0.00 0.00 0.00 1.73
1918 2331 0.458025 CTCAACTCCTAACGACCCGC 60.458 60.000 0.00 0.00 0.00 6.13
1921 2334 2.450609 TTGCTCAACTCCTAACGACC 57.549 50.000 0.00 0.00 0.00 4.79
2001 2416 2.294512 CAGAAACAACAAAGGGGAGCTC 59.705 50.000 4.71 4.71 0.00 4.09
2003 2418 1.269778 GCAGAAACAACAAAGGGGAGC 60.270 52.381 0.00 0.00 0.00 4.70
2006 2421 3.193479 GGATAGCAGAAACAACAAAGGGG 59.807 47.826 0.00 0.00 0.00 4.79
2010 2425 6.204688 CAGTAGTGGATAGCAGAAACAACAAA 59.795 38.462 0.00 0.00 0.00 2.83
2031 2446 1.079405 GCCGCCTGCAACTACAGTA 60.079 57.895 0.00 0.00 40.77 2.74
2032 2447 2.358737 GCCGCCTGCAACTACAGT 60.359 61.111 0.00 0.00 40.77 3.55
2033 2448 1.237285 AAAGCCGCCTGCAACTACAG 61.237 55.000 0.00 0.00 44.83 2.74
2034 2449 0.821711 AAAAGCCGCCTGCAACTACA 60.822 50.000 0.00 0.00 44.83 2.74
2035 2450 0.387239 CAAAAGCCGCCTGCAACTAC 60.387 55.000 0.00 0.00 44.83 2.73
2089 2504 6.840780 ACATAAACAAGGAGGAGAAAATGG 57.159 37.500 0.00 0.00 0.00 3.16
2141 2556 7.702348 CGAAAATTCAGAAAAAGAAACAGGTCT 59.298 33.333 0.00 0.00 0.00 3.85
2165 2580 1.505807 CATTTTGTCATGGGCGCGA 59.494 52.632 12.10 0.00 0.00 5.87
2174 2589 7.936496 TGATAAGTTATGCTCCATTTTGTCA 57.064 32.000 0.00 0.00 0.00 3.58
2175 2590 7.433425 GCTTGATAAGTTATGCTCCATTTTGTC 59.567 37.037 0.00 0.00 0.00 3.18
2176 2591 7.093814 TGCTTGATAAGTTATGCTCCATTTTGT 60.094 33.333 0.00 0.00 0.00 2.83
2191 2606 5.677319 TTACAGTAGGCTGCTTGATAAGT 57.323 39.130 1.02 0.00 46.30 2.24
2192 2607 6.203723 GGATTTACAGTAGGCTGCTTGATAAG 59.796 42.308 1.02 0.00 46.30 1.73
2195 2610 4.080356 TGGATTTACAGTAGGCTGCTTGAT 60.080 41.667 1.02 0.00 46.30 2.57
2221 2636 8.207521 CCAATTTTGGTTTTAGAGCAAGAAAA 57.792 30.769 0.95 0.00 45.58 2.29
2253 2668 9.482627 CGCTCTTATATTTCTTTATGGAGAAGT 57.517 33.333 0.00 0.00 37.01 3.01
2254 2669 9.482627 ACGCTCTTATATTTCTTTATGGAGAAG 57.517 33.333 0.00 0.00 37.01 2.85
2255 2670 9.832445 AACGCTCTTATATTTCTTTATGGAGAA 57.168 29.630 0.00 0.00 34.00 2.87
2256 2671 9.832445 AAACGCTCTTATATTTCTTTATGGAGA 57.168 29.630 0.00 0.00 0.00 3.71
2273 2688 9.654663 AAAGTAAGTAATGATCTAAACGCTCTT 57.345 29.630 0.00 0.00 0.00 2.85
2274 2689 9.088512 CAAAGTAAGTAATGATCTAAACGCTCT 57.911 33.333 0.00 0.00 0.00 4.09
2275 2690 7.846592 GCAAAGTAAGTAATGATCTAAACGCTC 59.153 37.037 0.00 0.00 0.00 5.03
2276 2691 7.333423 TGCAAAGTAAGTAATGATCTAAACGCT 59.667 33.333 0.00 0.00 0.00 5.07
2277 2692 7.461107 TGCAAAGTAAGTAATGATCTAAACGC 58.539 34.615 0.00 0.00 0.00 4.84
2278 2693 8.869897 TCTGCAAAGTAAGTAATGATCTAAACG 58.130 33.333 0.00 0.00 0.00 3.60
2280 2695 9.383519 CCTCTGCAAAGTAAGTAATGATCTAAA 57.616 33.333 0.00 0.00 0.00 1.85
2281 2696 8.758829 TCCTCTGCAAAGTAAGTAATGATCTAA 58.241 33.333 0.00 0.00 0.00 2.10
2282 2697 8.306313 TCCTCTGCAAAGTAAGTAATGATCTA 57.694 34.615 0.00 0.00 0.00 1.98
2283 2698 7.093112 ACTCCTCTGCAAAGTAAGTAATGATCT 60.093 37.037 0.00 0.00 0.00 2.75
2284 2699 7.044798 ACTCCTCTGCAAAGTAAGTAATGATC 58.955 38.462 0.00 0.00 0.00 2.92
2285 2700 6.951971 ACTCCTCTGCAAAGTAAGTAATGAT 58.048 36.000 0.00 0.00 0.00 2.45
2286 2701 6.360370 ACTCCTCTGCAAAGTAAGTAATGA 57.640 37.500 0.00 0.00 0.00 2.57
2287 2702 7.324178 ACTACTCCTCTGCAAAGTAAGTAATG 58.676 38.462 2.33 0.00 0.00 1.90
2288 2703 7.483580 ACTACTCCTCTGCAAAGTAAGTAAT 57.516 36.000 2.33 0.00 0.00 1.89
2289 2704 6.912951 ACTACTCCTCTGCAAAGTAAGTAA 57.087 37.500 2.33 0.00 0.00 2.24
2290 2705 8.591114 AATACTACTCCTCTGCAAAGTAAGTA 57.409 34.615 0.00 0.00 0.00 2.24
2291 2706 7.483580 AATACTACTCCTCTGCAAAGTAAGT 57.516 36.000 0.00 0.00 0.00 2.24
2292 2707 8.779354 AAAATACTACTCCTCTGCAAAGTAAG 57.221 34.615 0.00 0.00 0.00 2.34
2293 2708 7.544566 CGAAAATACTACTCCTCTGCAAAGTAA 59.455 37.037 0.00 0.00 0.00 2.24
2294 2709 7.033791 CGAAAATACTACTCCTCTGCAAAGTA 58.966 38.462 0.00 0.00 0.00 2.24
2295 2710 5.869888 CGAAAATACTACTCCTCTGCAAAGT 59.130 40.000 0.00 0.00 0.00 2.66
2296 2711 5.220491 GCGAAAATACTACTCCTCTGCAAAG 60.220 44.000 0.00 0.00 0.00 2.77
2297 2712 4.630069 GCGAAAATACTACTCCTCTGCAAA 59.370 41.667 0.00 0.00 0.00 3.68
2298 2713 4.081642 AGCGAAAATACTACTCCTCTGCAA 60.082 41.667 0.00 0.00 0.00 4.08
2299 2714 3.447586 AGCGAAAATACTACTCCTCTGCA 59.552 43.478 0.00 0.00 0.00 4.41
2300 2715 4.048241 AGCGAAAATACTACTCCTCTGC 57.952 45.455 0.00 0.00 0.00 4.26
2301 2716 4.735822 CGAAGCGAAAATACTACTCCTCTG 59.264 45.833 0.00 0.00 0.00 3.35
2302 2717 4.922719 CGAAGCGAAAATACTACTCCTCT 58.077 43.478 0.00 0.00 0.00 3.69
2324 2739 1.398041 TCACGATTGTTAGCATGCTGC 59.602 47.619 30.42 21.52 45.46 5.25
2325 2740 2.674852 AGTCACGATTGTTAGCATGCTG 59.325 45.455 30.42 13.73 0.00 4.41
2326 2741 2.674852 CAGTCACGATTGTTAGCATGCT 59.325 45.455 25.99 25.99 0.00 3.79
2327 2742 2.672874 TCAGTCACGATTGTTAGCATGC 59.327 45.455 10.51 10.51 0.00 4.06
2328 2743 4.926860 TTCAGTCACGATTGTTAGCATG 57.073 40.909 0.00 0.00 0.00 4.06
2329 2744 4.154195 GGTTTCAGTCACGATTGTTAGCAT 59.846 41.667 0.00 0.00 0.00 3.79
2330 2745 3.496884 GGTTTCAGTCACGATTGTTAGCA 59.503 43.478 0.00 0.00 0.00 3.49
2331 2746 3.496884 TGGTTTCAGTCACGATTGTTAGC 59.503 43.478 0.00 0.00 0.00 3.09
2332 2747 5.862924 ATGGTTTCAGTCACGATTGTTAG 57.137 39.130 0.00 0.00 0.00 2.34
2333 2748 5.107259 CGAATGGTTTCAGTCACGATTGTTA 60.107 40.000 0.00 0.00 37.81 2.41
2334 2749 4.319477 CGAATGGTTTCAGTCACGATTGTT 60.319 41.667 0.00 0.00 37.81 2.83
2335 2750 3.186409 CGAATGGTTTCAGTCACGATTGT 59.814 43.478 0.00 0.00 37.81 2.71
2336 2751 3.424829 CCGAATGGTTTCAGTCACGATTG 60.425 47.826 0.00 0.00 37.81 2.67
2337 2752 2.742053 CCGAATGGTTTCAGTCACGATT 59.258 45.455 0.00 0.00 37.81 3.34
2338 2753 2.028476 TCCGAATGGTTTCAGTCACGAT 60.028 45.455 0.00 0.00 37.81 3.73
2339 2754 1.341852 TCCGAATGGTTTCAGTCACGA 59.658 47.619 0.00 0.00 37.81 4.35
2340 2755 1.459592 GTCCGAATGGTTTCAGTCACG 59.540 52.381 0.00 0.00 37.81 4.35
2341 2756 1.459592 CGTCCGAATGGTTTCAGTCAC 59.540 52.381 0.00 0.00 37.81 3.67
2342 2757 1.606994 CCGTCCGAATGGTTTCAGTCA 60.607 52.381 0.00 0.00 37.81 3.41
2343 2758 1.076332 CCGTCCGAATGGTTTCAGTC 58.924 55.000 0.00 0.00 36.30 3.51
2344 2759 0.321298 CCCGTCCGAATGGTTTCAGT 60.321 55.000 0.00 0.00 36.30 3.41
2345 2760 0.321298 ACCCGTCCGAATGGTTTCAG 60.321 55.000 0.00 0.00 36.30 3.02
2346 2761 0.604243 CACCCGTCCGAATGGTTTCA 60.604 55.000 0.00 0.00 36.30 2.69
2347 2762 0.604511 ACACCCGTCCGAATGGTTTC 60.605 55.000 0.00 0.00 36.30 2.78
2348 2763 0.887387 CACACCCGTCCGAATGGTTT 60.887 55.000 0.00 0.00 36.30 3.27
2349 2764 1.302192 CACACCCGTCCGAATGGTT 60.302 57.895 0.00 0.00 36.30 3.67
2350 2765 2.211410 TCACACCCGTCCGAATGGT 61.211 57.895 0.00 0.00 36.30 3.55
2351 2766 1.740296 GTCACACCCGTCCGAATGG 60.740 63.158 0.00 0.00 0.00 3.16
2352 2767 1.005512 TGTCACACCCGTCCGAATG 60.006 57.895 0.00 0.00 0.00 2.67
2353 2768 1.292223 CTGTCACACCCGTCCGAAT 59.708 57.895 0.00 0.00 0.00 3.34
2354 2769 2.732016 CTGTCACACCCGTCCGAA 59.268 61.111 0.00 0.00 0.00 4.30
2355 2770 3.986006 GCTGTCACACCCGTCCGA 61.986 66.667 0.00 0.00 0.00 4.55
2356 2771 2.989055 AAAGCTGTCACACCCGTCCG 62.989 60.000 0.00 0.00 0.00 4.79
2357 2772 0.034337 TAAAGCTGTCACACCCGTCC 59.966 55.000 0.00 0.00 0.00 4.79
2358 2773 1.873698 TTAAAGCTGTCACACCCGTC 58.126 50.000 0.00 0.00 0.00 4.79
2359 2774 2.038557 AGATTAAAGCTGTCACACCCGT 59.961 45.455 0.00 0.00 0.00 5.28
2360 2775 2.699954 AGATTAAAGCTGTCACACCCG 58.300 47.619 0.00 0.00 0.00 5.28
2361 2776 5.453567 AAAAGATTAAAGCTGTCACACCC 57.546 39.130 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.