>input_sequence_81712
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-----------------------------------ATGGCAACCAGGTGCTTCTTCCCCAGGGACGCGGTGGCCGGGCGG
CACCAGTCCAAGGCGGCCGCGGAGGCGCTCGAGCACCTGCACCACGGGGGGCGCGTCCTGTCCCGGGAGGAGGTGGGCGG
CGCGGTGCGCGTCAAGATCGTGGTCAGCAAGCGCGAGCTCAAGAAGATGGTGGCCGCCCTCGGCACCGGCGGCGAGGTGG
CGGCCGCTGCGGCGTCTGCTGATCGCCGCAGCCGCCAGCGCGCGGCGGGCGGCGGC------ACGGACGCCGAGCAGAGG
CTGCAGTCGCTCCGGCGGCGCAGCATGCGCAGGGCGGCGGAGGAGACGAGGCGGATGCAGGCGAGCGGGGAGTGGGAGCC
CGACCTCCAGAGCATCCCCGAGGAGGTCTACTGA----------------------------------------------
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>chr6A_1_TraesCS6A01G252000
CGTCGGCTCGACCGTTTCCGTCAGCACAGCCAGGTCACCACACGAGAGGATTCAGTTCCGAACCACCTGAAAGGGACACC
AATGGCAACACCCCAGAGACTG------CGATCGAGCATTGCAGAATCGAGCCTCCTGCATTTCAAAACCATGCACCGCT
AATTCGCCA----GCACCTCCAGGCTCCGCGCTATGTGATCATACATACATCTCTACACTACACAGTACACATACAGTAC
---ATGTGAGGATGCACGTACTACCACCACACAATCACGATCGAACCTATCCA-------GATAGCAAGAGGGAACATGG
GGGGGTCATTGTTGTGGCCAGGGGCGTCCGTGTCAAACTGCGCCATCGTAACCAGAACGTACACGACCGTAGGCTCCACG
GGTCGTCGAGTTGGAGTCCCCATCGCGTTGTGATAACACGTTACTTGCAAGGGCCTCCCCCCATGGATCGTCCCAATGAC
TGCGAGAGGGACGGCCATGTGAGGCATCCATTTCTCTCCTCAACTGCCACGGCAATAAGTCTCGGTCCCATGATTGTTTC
GAGTCTTAAAAAAGATAGAGCATTTGTTTACCATTCTGTAAATCTATTGACAGTGCT-----------------------
----------ATTGATTTTGGGAGAAGAAAGGTATGGGATGGGACAGACGCGCACTCATCACAGGTGGCGAGGGAGCCGG
GCCGGGCCCCCCCTGGGCGCTGGCCCACCGGTCAGGGACCTGGGGTGGTGTGTTCGGAGACAG--------TTGGGGCTG
CGCGGCTCACCAAAAGGCAAGGCCCCTAATGCGGCCCAACCAGTATATAAGCATGTTAGCATGTCGCATTACTCGACAGC
CCGCACATTCACTTTGCCATTGCTTTAGCCTTTCTGCTGTGGCTTGCAAGGAACGTCGGAGGAGCAAGGACTGAGCGCTA
CCACTGCTTGCCCG-CCGGCGGACAGACACCGCACCGGG----GCTCGTTTGCTTGCGGGCGGCGGCGG---------CG
GCGGCCAACGATCGCATCGCGTCGCGGCGAGATCGATGGCAACCAGGTGCTTCTTCCCCAGGGACGCGGTGGCCGGGCGG
CACCAGTCCAAGGCGGCCGCGGAGGCGCTCGAGCACCTGCACCACGGGGGGCGCGTCCTGTCCCGGGAGGAGGTGGGCGG
CGCGGTGCGCGTCAAGATCGTGGTCAGCAAGCGCGAGCTCAAGAAGATGGTGGCCGCCCTCGGCACCGGCGGCGAGGTGG
CGGCCGCTGCGGCGTCTGCTGATCGCCGCAGCCGCCAGCGCGCGGCGGGCGGCGGC------ACGGACGCCGAGCAGAGG
CTGCAGTCGCTCCGGCGGCGCAGCATGCGCAGGGCGGCGGAGGAGACGAGGCGGATGCAGGCGAGCGGGGAGTGGGAGCC
CGACCTCCAGAGCATCCCCGAGGAGGTCTACTGAGTTACCGCTAGTGGTCTAGTAGATGATGGCGCCGTCGGTGATGGTT
AATCACTTTACTAATTATAAGGTTGGGTTTTGATCACCTGCTGCTAAATGCTACTCGTA---GTAGATGTATGTGTACAG
TGCTCTTGATTGGTTCCTGTTCCTTAACTATGAGGGTTAAACTTGTGCTGGTTAATCCTCCTCCG-------CTCCTCCT
CCATCAGCTTGTGCAATTTTTTCCG-GTGAAATTTTGGAGATTGTGTGAAACAGATGAAGAACGAGAGGTGACCTGACTA
GAATGCAAGAGCTGCATTCATCTGAAATACTTTCACCATCTGCTATGTGTGCAAAAG-----------------------
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------------------------------------------------TTCATCTGAAATACTTTCACCATCTGCTATGT
GTGGAAAAGTTGAGGAGTAAAAACAAGTGCTGCCGCAGTCAGGTTAAACTATTTGTAAACTGTGGGTTCGTGGCTGGACT
GTGCTACTTTGGGT---------GCCTTTTGAGCTGTTGTGTTCTTTTGCCTTTCTGTTGGGCATGGAACATAATCAAAA
AGTAGTATTAGCGGGTCGTTAGGAGTTGAGCAAAGCAGAAGCGGTGCCGAGATTCCATCGCACATGGCCAGA--TGTGTG
TCACATTAAAGAAACGAGCTCCCCTTTGTTGTTTCTGCTATCCACTACTGTAGTTGCAGGCGGCTTTTGCCATGCTGTGG
CTGCTGTTCGCCGCTGCGGAGGGCCATTTTCTCCTCCTTGTTTATGTATTTTTCGCGCACAAAATAGGGCGATCAAGACC
TGTTTCTTTTTCTGAATTTTCGCGCCCATGACAAAATGGAGCATAACTTATCAAGCAGCCTACTGTAAATCCATATTTTC
TTGCTCTAAAACCAAAATTGGACTGTAACTTCTCCATAAAGAAATATAAGAGCGTTTAGATCATTACTTACTTTGCAGAG
GAGTAGTATTTTCGCTTCGCAGCATGCTAACAATCGTGACTGAAACCATTCGGACGGGTGTGACAGCTTTAATCTTTTTT
GTGTGAA
>chr6B_1
CGTCCGCTCGACTGTTTCCGTCAGCACAGCCAGGTCACCATGCGAGAGGATTCAGTTCCGAACCACCTGAAAGGGACAGC
AATGGTAATGCCTCTCAAAGCCTGCGATCGATCGAGCATTGCAGAGTTGAGCCTCCTGCATTTCAAGACCATGCACTGCT
AATTCGCCA----GCGCCTCCAGACCCCGTGCTACGCGATCATACATACATCCCTACACTACACAGTACACATACATGTG
CTGATGTGTGGATGCACGTACTACCACCACACGATCGCGATCGAACTTATCCG-------AATAGCAAGAGGGAACATGG
GA-GGTCATTGTTGTGGCCAAGGGTGTCCGTGTCAAACTTCGCCATCGTAACCAGAACGTACACGACCGTAGGCTCCACG
GGTCGTCGAGTTGGAGTCTCCATCGCGTTGTGATAACACGTTACTTGCAAGGGCCTCCCCCCATGGATCGTCCCAATGAC
TGCGAGTGGGACGGCCATGTGAGGCATCCATTTCTCTGTTCAACTGCCATGGCAATAAGTCTCGGTCCCATGATTGTTTA
GAGTCTTAAAAAAGCTAGAGCATTTGTTTACCATTCTGTAAATCTATTAACAGCAGCATTGATCCATGTTAGTACA----
TGTTTAATTAATTGATTTTCAGAGAAGAAAGGTT-----TGGGACAGACACGCACTCATCACAGGTGGCGAGGGAGCCA-
----GGTCCCCACTGCGCACTGGCCCACTGGTCAGTGACCTGAGGTGGTGTATTTGGAGACAGTTGGGGGCTTGGGGCTG
CGCGGCTCACCAAAAGGCAA--CCCCTAATGCGCCCCAACCAGTATATAAGCATGTTAGCATGTCACATTACTCGACAGC
CCGCACATTCACTTTGCCATTGCTTTAGCCTTTCTGCTGTAGCTTGCAAGGAACGTCGGAGGAGGAAGGACTGAGCGCTA
CTACTACTTGCCCGGCCGGCGGACA----CCGCACCAGTGCTCGCTCGCTTGCTTGCGGGCGGCGTCGGCGTCGGCGTCG
GCGGCCACCGAT-----CGTATCGCGGCCAGATCGATGGCGACCAGGTGCTTCTTCCCCAGGGACGCGGTGGCCGGACGG
CACCAGTCCAAGGCGGCAGAGCAGGCCCTCGAGCAGCTGCACCACGGCGGCCGCGTCCTGTCCCGAGAGGAAGTGGGCGG
CGCGGTGCGCGTCAAGATCGTTGTCAGCAAGCGCGAGCTCAAGAAGATGGTGGCCGCCCTCGGCACCGGCGGCGAGGTGG
CGGCCGCAGCGGCGTCTGCTGATCGCCGCAGCCGCCAGCGCGCGGCGGGCGGCGGCGGCAGCACGGACGCCGAGCAGAGG
CTGCAGTCGCTCCGGCGGCGCAGCATGCGCAGGGCGGCCGAGGAGACGAGGCGGATGCAGGCGAGCGGGGAGTGGGAGCC
CGGCCTCCAGAGCATCCCCGAGGAGGTTTACTGAGTTACTAGCGGTT---TAGTAGATGATGGCGTCGTCGGTGATGGTT
AATCACTTTACTAATTATAAGGTTGGGTTTTGATCACCTCCTGCTAAATGC------TA---GTAGATGTATGTGTACAA
TGCTCTTGATTTGTTCTTGTTCCTTAACTATGAGGGTTAAACTTCTGCTGGTTAATCCTCCTCCTCCTCCTCCTCCTCCT
CCATCAGCTTGTGCAATTTTTTCCCTGTGAAATTTTGGAGATTGTGCGAAACAGATGAAAAATGAGAGGTGATCTGACTA
CAATGCAAGAGCTGCATTCAACAGTAAAATCAAAAAAAATTCAAAAAAATCCAAATTTTCTTGGTAGAAACATTGACAAA
AGTTTTAAGTCCTTGCAAAAATTCGTCATGAAATCACGTTTCTAGAAGGCGTGGCAAAAAAACAAAATCGGTACTCTGAA
AATGCTACTTTCAAAAGCATTTTGGAGGCTGAATTTATTTTTTTGCCACGCCTCACAGGAATGTGATTTTATGATGAATT
TTTGCAAGCACTTAGAACTTTTGTCAATATTTCTCTGAGATTTTTTTTGGAATTTTTTGATTTTATTTTTATTTTTTTTC
GATTTTACTGTTCACCGAGCTGCTCGGAAGCAGAAAGGCACTTTCGCATTCATCTGAAATACTTTCACTATCTGTTATGT
GCGGAAAACTTCAGGAGTAAAAACAAGTGCTGCCGCTGTCAAGTTAAACTG-TAGTAAACTGTGGGTTCGTGGCTGGACT
GTGCTACTTTGGCT---------GCCTTTTTAGCTGTTGTGTTCTTTTGCCTTTCTGTTGGGCATGGAACATAATCAAAA
AGTA---TTAACGAGTCGTTAGGAGTTGAGCAAAGCAGAAGCGGTGCCGAGATTCCATCGCACATGGCCAGA--TGTGTG
TCACATTAAAGAAACCATCTTCCC-TTGTTGTTTCTGCTATCCAC-----TAGTTGCAGGCGGCTTTTGCCATGCTGTGG
CTGCTGTT-GCCGCTGCCGAGGGTCATTTTCTCCTCCTTGTTTATGTATTTTTCGCGCACAAAATAGGGCGATCACGACC
TGCTTCTTTTTCTGAATTT-CTCACCCAGAGCAAAATGGAGCATAGTTTGTCAAACAGCCTAGCGTAAATCCATACTTTC
TTCTTCTAAAACCAAAATTAGAGTGTA-----------------------------------------------------
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>chr6D_1
CGTCCGCTCGACTGTTTCCGTCAGCACAGCCAGGTCACCATGCGAGAGGATTCAGTTCCGAACCACCTGAAAGGGACACC
AATGGCAATGCCGCAAAGACTG------CGATCGAGCATTGCAGAGTCGAGCCTCCTGCACTTCAAAACCATGCACAGAT
GCACTGCTAACTCGCACCTCCAAACTCCGTGATATGCGAT----CATACATCCCTACACTACACAGGTACTCCTACATGC
ACG------------------TACTACCACAGGATCACCATCGAACTTATCCGGATAGGCGATAGCAAGAGGGAACATGG
GA-GGTCAGTGTTGTGGCCAAGGGTGTCCATGTCAAACTGCGCCATCGTAACCAGAACGTACACGACCGTAGGCTCCACG
GGTCGCCGAGTTGGGGTCTCCATCGCCTTGTGATAACACGTTACTTGCAAGGGCCTCCCCCCATGGATCGTCCCAATGAC
TGCGAGAGGGACGGCCATGTGAGGCACCCATTTCTCTATTCAACTGCCATGGCAATAAGTCTCGGTCCCATGATTGTTTA
GAGTCTTAAAAAAGCTAGAGCATCTGTTTACCATTCTGTAAATCTATTAACAGCAGCATTGATCCATGTTAGTAAGTACC
TGTTTAATTAATTGATTTTCAGAGAAGAAAGGCT-----TGGGACAGACACACACTCATCACAGGTGGCGAGGGAGCCA-
----GGGCCCCCATGGGCGCTGGCCCACCGGTCAGGGACCTGAGGTGGTGTGTTTGGAGACAG--------TTGGGGCTG
CGCGGCTCACCAAAAGGCAAGGCCCCTAATGCGCCCCAACCAGTATATAAGCATGTTAGCATGTCACATTACTCGACAGC
CCGCACATTCACTTTGCCATTGCTTTAGCCTTTGTGCTGTAGCTTGCAAGGAACGTCGGAGGAGGACGGACTGAGCGCTA
CTACTGCTTGCCCGGCCGGCGGACAGACACCGCACCAGTGCCCGCTCGTTTGCTTGCGGGCGGCGTCGG---------CG
GCGGCCACCGAT-----CGCATCGCGGCGAGATCGATGGCGACAAGGTGCTTCTTCCCCAGGGACGCGGTGGCCGAACGG
CACCAGTCCAAGGCGGCCGCGGAGGCGCTCGAGCAGCTGCACCACGGGGGGCGCGTCCTGTCCCGGGAGGAGGTGGGCGG
CGCGGTGCGCGTCAAGATCGTGGTCAGCAAGCGTGAGCTCAAGAAGATGGTGGCCGCCCTCGGCACCGGCGGCGAGGTGG
CGGCCGCTGCGGCGTCTGCGGAACGCCGCAGCCGCCAGCGCGCGGCGGGCGGCGGC------ACCGACGCCGAGCAGAGG
CTGCAGTCGCTCCGGCGGCGCAGCATGCGCAGGGCGGCCGAGGAGACGAGGCGGATGCAGGCGAGCGGGGAGTGGGAGCC
CGGCCTCCAGAGCATCCCCGAGGAGGTCTACTGAGTTACCGCTAGTGGTCTAGTA---GATGGCGCCGTCGGTGATGGTT
AATCACTTTACTAATTATAAGGTTGGGTTTTGATCACCTCCTGCTAAATGC------TACTCGTAGATGTATGTGTACAG
TGCTCTTGATTTGTTCCTGTTCCTTGACTATGAGGGTTAAACTTCTGCTGGTTAATC---------------CTCCTCCT
CCATCAGCTTGTGCGATTTTTTCCG-GTTAAATTTTGGGGATTGTGTGAAACAGATGAAAAATGAGAGGTGATCTGACTA
CAATGCAAGAGCTGCATTCA------------------------------------------------------------
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----------------------------------------------------TCTGAAATACTTTCACTATCTGCTATGT
GTGGAAAAGTTCAGGAGTAAAAACAAGTGCTGCCGCTGTCAAGTTAAACTG-TTGTAAACTGTGAGTTCGTGGCTGGACT
GTGCTACTTTGGCTGCCTTTTTAGCCTTTTTAGCTGTTGTGTTCTTTCGCCTTTCTG---------GAACATAATCAAAA
AGTA---TTAACGAGTCGTTAGGAGTTGAGCAAAGCAGAAGCGGTGCCGAGATTCCATCGCACATGGCCAGATGTGTGTG
TCACATTAAAGAAACCATCTTCCC-TTGTTGTTTCTGCTATCCAC-----TAGTTGCAGGCGGCTTTTGCCATGCTGTGG
CTGCTGTT-GCCGCTGCGGAGGGTCATTTTCTCCTCCTTGTTTATGTATTTTTCGCGCACAAAATAGGGCGATCACGACC
TGTTTCTTTTTCTGAATTT-CGCGCCCAGAGCAAAATGGAGCATATTTTGTCAAGCAGCTTAGTGTAAATCCATACTTTC
TTGCTCCAAAACCAAAATTG------------------------------------------------------------
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>SNPs
----S-------S---------------------------SS--------------------------------------
--------SS--S--S-----------------------------S------------------------------S---
-----------------------S-----S------S---------------S-----------------------S-S-
--------S-----------------------S-------------S-----S---------------------------
-SS-----------------S---S-------------------------------------------------------
------------------S-------------------------------------------------------------
-------------------------------------SS----------S-----------------------------S
--------------S---------------------------------S----SSSS-----------------------
-------------------SS------------SSSSSS----------S----------------------------SS
SSSS--S-----------------------------------S-----------S-------------------------
---------------------------------S-------------------------------S--------------
----------------------------------------S-----------------------S---------------
-S----------------------------------S-S--------------------------S--------------
-------S----SSSSS---S-------------------S-----------------------------------S---
-----------------------------------S--------------------------------------------
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--------------------------------------S-----------------------------------------
--S-----------------------------------------------------------------------------
---------------------------------------S-----------SSSSSS-----------------------
-----------S--------------------------------S-------------------S---------------
-----------------------------------------------------------S--S---------S-------
S-------------------S-S-S--S-SSSSS-SS-SS-SSS-SSSS-S----SS-----------------------
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--------------------------------------------------------------------S-----------
-----------S------------------------S----S--------SS----------------------------
------------S-----------------S-------------------------------------------------
----SSS---S--S------------------------------------------------------------------
---------------S-S--S---S--------------------SSSSS------------------------------
--------S--------------S---------------------------------------------------S----
-------------------S--------SSS--------------SS--S------------S------------S----
----------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_273
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-------------GCACGTACTACCACCACACA-----------------------------------------------
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>reverse_1665
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----------------------------------------------------------------GCTCCTCCTCCATCAG
CTTG----------------------------------------------------------------------------
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