Multiple sequence alignment - TraesCS6A01G249100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G249100 chr6A 100.000 3163 0 0 1 3163 461971322 461974484 0.000000e+00 5842.0
1 TraesCS6A01G249100 chr6D 87.715 1164 119 15 1680 2824 324571335 324572493 0.000000e+00 1336.0
2 TraesCS6A01G249100 chr6D 90.371 862 52 14 763 1602 324570468 324571320 0.000000e+00 1103.0
3 TraesCS6A01G249100 chr6D 92.350 366 25 3 316 680 443773781 443774144 4.680000e-143 518.0
4 TraesCS6A01G249100 chr6D 94.904 314 16 0 1 314 239855694 239855381 2.830000e-135 492.0
5 TraesCS6A01G249100 chr6B 89.586 845 74 9 1678 2514 498978730 498977892 0.000000e+00 1061.0
6 TraesCS6A01G249100 chr6B 86.371 653 79 6 1787 2430 52757405 52756754 0.000000e+00 704.0
7 TraesCS6A01G249100 chr6B 86.355 513 42 19 2506 3014 498868947 498868459 4.640000e-148 534.0
8 TraesCS6A01G249100 chr6B 85.685 496 65 2 1003 1493 52758030 52757536 4.680000e-143 518.0
9 TraesCS6A01G249100 chr6B 88.218 331 33 5 1269 1596 498987938 498987611 1.060000e-104 390.0
10 TraesCS6A01G249100 chr6B 86.818 220 14 4 1058 1277 498994949 498994745 6.820000e-57 231.0
11 TraesCS6A01G249100 chr6B 92.126 127 10 0 729 855 499005670 499005544 2.510000e-41 180.0
12 TraesCS6A01G249100 chr1D 92.623 366 25 2 316 680 27553332 27553696 2.790000e-145 525.0
13 TraesCS6A01G249100 chr1D 94.904 314 16 0 1 314 6185607 6185294 2.830000e-135 492.0
14 TraesCS6A01G249100 chr4D 93.056 360 22 3 316 674 37261399 37261756 1.010000e-144 523.0
15 TraesCS6A01G249100 chr4D 96.178 314 12 0 1 314 461393041 461392728 6.050000e-142 514.0
16 TraesCS6A01G249100 chr4D 95.860 314 13 0 1 314 37261047 37261360 2.810000e-140 508.0
17 TraesCS6A01G249100 chr4D 94.904 314 16 0 1 314 26222983 26223296 2.830000e-135 492.0
18 TraesCS6A01G249100 chr7D 91.892 370 29 1 316 685 18852280 18851912 1.680000e-142 516.0
19 TraesCS6A01G249100 chr5D 92.978 356 22 3 316 670 378908269 378907916 1.680000e-142 516.0
20 TraesCS6A01G249100 chr5D 94.904 314 16 0 1 314 553359970 553360283 2.830000e-135 492.0
21 TraesCS6A01G249100 chr5D 80.723 83 11 5 2980 3060 197861562 197861641 3.410000e-05 60.2
22 TraesCS6A01G249100 chr2D 96.178 314 12 0 1 314 116622716 116622403 6.050000e-142 514.0
23 TraesCS6A01G249100 chr2D 94.904 314 16 0 1 314 219565995 219565682 2.830000e-135 492.0
24 TraesCS6A01G249100 chr1A 92.077 366 28 1 316 681 33114716 33114352 6.050000e-142 514.0
25 TraesCS6A01G249100 chr5B 92.055 365 28 1 316 680 67186675 67187038 2.180000e-141 512.0
26 TraesCS6A01G249100 chr3D 91.599 369 26 4 316 683 330685703 330686067 3.640000e-139 505.0
27 TraesCS6A01G249100 chr2B 90.957 376 31 3 316 689 163556499 163556125 1.310000e-138 503.0
28 TraesCS6A01G249100 chr4A 95.223 314 15 0 1 314 120366467 120366154 6.090000e-137 497.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G249100 chr6A 461971322 461974484 3162 False 5842.0 5842 100.000 1 3163 1 chr6A.!!$F1 3162
1 TraesCS6A01G249100 chr6D 324570468 324572493 2025 False 1219.5 1336 89.043 763 2824 2 chr6D.!!$F2 2061
2 TraesCS6A01G249100 chr6B 498977892 498978730 838 True 1061.0 1061 89.586 1678 2514 1 chr6B.!!$R2 836
3 TraesCS6A01G249100 chr6B 52756754 52758030 1276 True 611.0 704 86.028 1003 2430 2 chr6B.!!$R6 1427
4 TraesCS6A01G249100 chr4D 37261047 37261756 709 False 515.5 523 94.458 1 674 2 chr4D.!!$F2 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.037326 TCCTGTTGACCGTGCATCTC 60.037 55.0 0.00 0.0 0.00 2.75 F
1915 2000 0.107897 AACGGCGCCTCATTGTATGA 60.108 50.0 26.68 0.0 37.76 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2247 0.106569 TGGGCATCGGCATCTCAATT 60.107 50.0 0.0 0.0 43.71 2.32 R
2868 2966 0.255890 GCTCCTTAACATGCCCCTCA 59.744 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 1.612442 GCCCTCACCACCTACTCCA 60.612 63.158 0.00 0.00 0.00 3.86
109 110 2.766263 CCACCTACTCCAATGCAGACTA 59.234 50.000 0.00 0.00 0.00 2.59
145 146 2.670592 TCGTCGCTCCACTTCGGA 60.671 61.111 0.00 0.00 43.61 4.55
187 188 1.200252 CTCACTCATCTCGTGGTCGTT 59.800 52.381 0.00 0.00 38.33 3.85
204 205 2.938086 TTCAAGCGGCAGCCTACGA 61.938 57.895 10.54 0.00 46.67 3.43
242 243 1.878522 GGCTGAGTATCGTGCGGTG 60.879 63.158 0.00 0.00 38.61 4.94
314 315 0.813610 CTTGTCCTGTTGACCGTGCA 60.814 55.000 0.00 0.00 43.78 4.57
315 316 0.179032 TTGTCCTGTTGACCGTGCAT 60.179 50.000 0.00 0.00 43.78 3.96
317 318 0.320771 GTCCTGTTGACCGTGCATCT 60.321 55.000 0.00 0.00 38.09 2.90
318 319 0.037326 TCCTGTTGACCGTGCATCTC 60.037 55.000 0.00 0.00 0.00 2.75
319 320 1.021390 CCTGTTGACCGTGCATCTCC 61.021 60.000 0.00 0.00 0.00 3.71
321 322 1.374252 GTTGACCGTGCATCTCCGT 60.374 57.895 0.00 0.00 0.00 4.69
322 323 1.080093 TTGACCGTGCATCTCCGTC 60.080 57.895 0.00 0.00 0.00 4.79
323 324 1.532604 TTGACCGTGCATCTCCGTCT 61.533 55.000 0.00 0.00 0.00 4.18
324 325 0.678684 TGACCGTGCATCTCCGTCTA 60.679 55.000 0.00 0.00 0.00 2.59
327 328 0.527817 CCGTGCATCTCCGTCTAACC 60.528 60.000 0.00 0.00 0.00 2.85
328 329 0.527817 CGTGCATCTCCGTCTAACCC 60.528 60.000 0.00 0.00 0.00 4.11
336 373 0.683828 TCCGTCTAACCCGGTGCATA 60.684 55.000 0.00 0.00 45.63 3.14
384 421 8.605065 AGTTGGATATTCATTTTGTTTGGGAAT 58.395 29.630 0.00 0.00 33.22 3.01
392 429 1.931635 TTGTTTGGGAATAGGTGGCC 58.068 50.000 0.00 0.00 0.00 5.36
398 435 1.286305 GGGAATAGGTGGCCCTTGGA 61.286 60.000 0.00 0.00 42.66 3.53
406 443 1.064017 GGTGGCCCTTGGACATATTCA 60.064 52.381 0.00 0.00 45.49 2.57
419 456 4.793216 GGACATATTCATGTTTTGCACGTC 59.207 41.667 0.00 0.00 45.58 4.34
427 464 2.645802 TGTTTTGCACGTCCCTACTTT 58.354 42.857 0.00 0.00 0.00 2.66
428 465 3.018149 TGTTTTGCACGTCCCTACTTTT 58.982 40.909 0.00 0.00 0.00 2.27
449 486 8.465999 ACTTTTCAACAATTTGCCGATATCATA 58.534 29.630 3.12 0.00 32.17 2.15
575 612 2.582052 CATATTGTGTATTGGGCCCGT 58.418 47.619 19.37 11.40 0.00 5.28
582 619 1.349067 GTATTGGGCCCGTCTCCTAT 58.651 55.000 19.37 4.14 0.00 2.57
585 622 0.996583 TTGGGCCCGTCTCCTATTTT 59.003 50.000 19.37 0.00 0.00 1.82
597 634 8.636213 CCCGTCTCCTATTTTCTTGTATAGTTA 58.364 37.037 0.00 0.00 0.00 2.24
603 640 8.215736 TCCTATTTTCTTGTATAGTTAAGGCCC 58.784 37.037 0.00 0.00 0.00 5.80
608 645 2.469952 TGTATAGTTAAGGCCCGTGGT 58.530 47.619 0.00 0.00 0.00 4.16
634 671 9.299465 TCCACCTTTGTACATCATATATACGTA 57.701 33.333 0.00 0.00 0.00 3.57
661 698 3.113322 GCACGAAGAGCAATACATCGTA 58.887 45.455 0.00 0.00 45.32 3.43
667 704 6.976349 ACGAAGAGCAATACATCGTACAATTA 59.024 34.615 0.00 0.00 44.08 1.40
668 705 7.043590 ACGAAGAGCAATACATCGTACAATTAC 60.044 37.037 0.00 0.00 44.08 1.89
669 706 7.043656 CGAAGAGCAATACATCGTACAATTACA 60.044 37.037 0.00 0.00 0.00 2.41
674 711 8.335356 AGCAATACATCGTACAATTACAACATC 58.665 33.333 0.00 0.00 0.00 3.06
675 712 8.119845 GCAATACATCGTACAATTACAACATCA 58.880 33.333 0.00 0.00 0.00 3.07
679 716 8.710835 ACATCGTACAATTACAACATCATACA 57.289 30.769 0.00 0.00 0.00 2.29
680 717 9.325198 ACATCGTACAATTACAACATCATACAT 57.675 29.630 0.00 0.00 0.00 2.29
688 725 9.950680 CAATTACAACATCATACATTAACTCCC 57.049 33.333 0.00 0.00 0.00 4.30
689 726 9.693739 AATTACAACATCATACATTAACTCCCA 57.306 29.630 0.00 0.00 0.00 4.37
690 727 9.693739 ATTACAACATCATACATTAACTCCCAA 57.306 29.630 0.00 0.00 0.00 4.12
691 728 9.693739 TTACAACATCATACATTAACTCCCAAT 57.306 29.630 0.00 0.00 0.00 3.16
692 729 7.999679 ACAACATCATACATTAACTCCCAATG 58.000 34.615 0.00 0.00 38.95 2.82
693 730 7.833682 ACAACATCATACATTAACTCCCAATGA 59.166 33.333 2.29 0.00 36.95 2.57
694 731 8.853126 CAACATCATACATTAACTCCCAATGAT 58.147 33.333 2.29 0.00 36.95 2.45
695 732 9.425248 AACATCATACATTAACTCCCAATGATT 57.575 29.630 2.29 0.00 36.95 2.57
696 733 9.071276 ACATCATACATTAACTCCCAATGATTC 57.929 33.333 2.29 0.00 36.95 2.52
697 734 9.070179 CATCATACATTAACTCCCAATGATTCA 57.930 33.333 2.29 0.00 36.95 2.57
698 735 9.645128 ATCATACATTAACTCCCAATGATTCAA 57.355 29.630 2.29 0.00 36.95 2.69
699 736 8.902806 TCATACATTAACTCCCAATGATTCAAC 58.097 33.333 2.29 0.00 36.95 3.18
700 737 8.685427 CATACATTAACTCCCAATGATTCAACA 58.315 33.333 2.29 0.00 36.95 3.33
701 738 7.161773 ACATTAACTCCCAATGATTCAACAG 57.838 36.000 2.29 0.00 36.95 3.16
702 739 6.153340 ACATTAACTCCCAATGATTCAACAGG 59.847 38.462 2.29 0.00 36.95 4.00
703 740 4.387026 AACTCCCAATGATTCAACAGGA 57.613 40.909 0.00 0.00 0.00 3.86
704 741 4.598036 ACTCCCAATGATTCAACAGGAT 57.402 40.909 0.00 0.00 0.00 3.24
705 742 5.715439 ACTCCCAATGATTCAACAGGATA 57.285 39.130 0.00 0.00 0.00 2.59
706 743 5.688807 ACTCCCAATGATTCAACAGGATAG 58.311 41.667 0.00 0.00 0.00 2.08
707 744 4.464008 TCCCAATGATTCAACAGGATAGC 58.536 43.478 0.00 0.00 0.00 2.97
708 745 3.251729 CCCAATGATTCAACAGGATAGCG 59.748 47.826 0.00 0.00 0.00 4.26
709 746 3.304257 CCAATGATTCAACAGGATAGCGC 60.304 47.826 0.00 0.00 0.00 5.92
710 747 2.689553 TGATTCAACAGGATAGCGCA 57.310 45.000 11.47 0.00 0.00 6.09
711 748 2.554142 TGATTCAACAGGATAGCGCAG 58.446 47.619 11.47 0.00 0.00 5.18
712 749 2.168313 TGATTCAACAGGATAGCGCAGA 59.832 45.455 11.47 0.00 0.00 4.26
713 750 2.760634 TTCAACAGGATAGCGCAGAA 57.239 45.000 11.47 0.00 0.00 3.02
714 751 2.988010 TCAACAGGATAGCGCAGAAT 57.012 45.000 11.47 0.00 0.00 2.40
715 752 2.826428 TCAACAGGATAGCGCAGAATC 58.174 47.619 11.47 9.56 0.00 2.52
716 753 2.168313 TCAACAGGATAGCGCAGAATCA 59.832 45.455 11.47 0.00 0.00 2.57
717 754 2.522836 ACAGGATAGCGCAGAATCAG 57.477 50.000 11.47 8.57 0.00 2.90
718 755 2.034878 ACAGGATAGCGCAGAATCAGA 58.965 47.619 11.47 0.00 0.00 3.27
719 756 2.632028 ACAGGATAGCGCAGAATCAGAT 59.368 45.455 11.47 0.00 0.00 2.90
720 757 3.252400 CAGGATAGCGCAGAATCAGATC 58.748 50.000 11.47 0.00 0.00 2.75
721 758 2.896044 AGGATAGCGCAGAATCAGATCA 59.104 45.455 11.47 0.00 0.00 2.92
722 759 3.514706 AGGATAGCGCAGAATCAGATCAT 59.485 43.478 11.47 0.00 0.00 2.45
723 760 3.864583 GGATAGCGCAGAATCAGATCATC 59.135 47.826 11.47 0.00 0.00 2.92
724 761 4.381825 GGATAGCGCAGAATCAGATCATCT 60.382 45.833 11.47 0.00 0.00 2.90
725 762 3.029320 AGCGCAGAATCAGATCATCTC 57.971 47.619 11.47 0.00 0.00 2.75
726 763 2.629137 AGCGCAGAATCAGATCATCTCT 59.371 45.455 11.47 0.00 33.14 3.10
727 764 3.069872 AGCGCAGAATCAGATCATCTCTT 59.930 43.478 11.47 0.00 29.16 2.85
728 765 3.184783 GCGCAGAATCAGATCATCTCTTG 59.815 47.826 0.30 0.00 29.16 3.02
729 766 4.370049 CGCAGAATCAGATCATCTCTTGT 58.630 43.478 0.00 0.00 29.16 3.16
730 767 4.209495 CGCAGAATCAGATCATCTCTTGTG 59.791 45.833 0.00 0.00 29.16 3.33
731 768 4.024725 GCAGAATCAGATCATCTCTTGTGC 60.025 45.833 11.00 11.00 32.37 4.57
732 769 4.512198 CAGAATCAGATCATCTCTTGTGCC 59.488 45.833 0.00 0.00 29.16 5.01
733 770 4.163649 AGAATCAGATCATCTCTTGTGCCA 59.836 41.667 0.00 0.00 29.16 4.92
734 771 3.986996 TCAGATCATCTCTTGTGCCAA 57.013 42.857 0.00 0.00 29.16 4.52
735 772 3.603532 TCAGATCATCTCTTGTGCCAAC 58.396 45.455 0.00 0.00 29.16 3.77
736 773 2.350804 CAGATCATCTCTTGTGCCAACG 59.649 50.000 0.00 0.00 29.16 4.10
737 774 1.667724 GATCATCTCTTGTGCCAACGG 59.332 52.381 0.00 0.00 0.00 4.44
738 775 0.321564 TCATCTCTTGTGCCAACGGG 60.322 55.000 0.00 0.00 37.18 5.28
739 776 1.002134 ATCTCTTGTGCCAACGGGG 60.002 57.895 0.00 0.00 40.85 5.73
748 785 4.460683 CCAACGGGGCCGAATCGA 62.461 66.667 3.36 0.00 42.83 3.59
749 786 2.203015 CAACGGGGCCGAATCGAT 60.203 61.111 3.36 0.00 42.83 3.59
750 787 2.108362 AACGGGGCCGAATCGATC 59.892 61.111 3.36 0.00 42.83 3.69
764 801 2.649331 TCGATCGACAGGGTTTCTTC 57.351 50.000 15.15 0.00 0.00 2.87
793 830 6.472163 CACAAAACAGCTAAGTCAACGATTTT 59.528 34.615 0.00 0.00 0.00 1.82
799 836 5.635280 CAGCTAAGTCAACGATTTTCTGAGA 59.365 40.000 0.00 0.00 0.00 3.27
816 853 2.159043 TGAGATCACCAAGCGATCCTTC 60.159 50.000 0.00 0.00 40.17 3.46
818 855 0.179073 ATCACCAAGCGATCCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
837 874 1.394917 CGTCAATCCGCAAGAAAGGAG 59.605 52.381 0.00 0.00 40.26 3.69
846 883 1.888512 GCAAGAAAGGAGCAATGTGGA 59.111 47.619 0.00 0.00 0.00 4.02
867 904 4.382901 GGAGGAGACTAAGAGAGTGTACGA 60.383 50.000 0.00 0.00 44.43 3.43
868 905 4.761975 AGGAGACTAAGAGAGTGTACGAG 58.238 47.826 0.00 0.00 37.36 4.18
874 911 7.160726 AGACTAAGAGAGTGTACGAGTTTACT 58.839 38.462 0.00 0.00 39.06 2.24
875 912 8.310382 AGACTAAGAGAGTGTACGAGTTTACTA 58.690 37.037 0.00 0.00 39.06 1.82
876 913 8.250538 ACTAAGAGAGTGTACGAGTTTACTAC 57.749 38.462 0.00 0.00 36.87 2.73
877 914 8.093927 ACTAAGAGAGTGTACGAGTTTACTACT 58.906 37.037 0.00 0.00 37.02 2.57
878 915 6.724694 AGAGAGTGTACGAGTTTACTACTG 57.275 41.667 0.00 0.00 37.17 2.74
899 936 7.040473 ACTGTACGAGCTAGCAGTATAAAAT 57.960 36.000 18.83 5.26 40.00 1.82
939 976 3.638592 ATACACAACCGGGCCCTGC 62.639 63.158 22.43 0.00 0.00 4.85
980 1017 2.027214 CCTACACGCAACGAATTACGAC 59.973 50.000 0.00 0.00 45.77 4.34
995 1032 1.152989 ACGACTAGCCTAGCGACTCG 61.153 60.000 18.07 13.11 32.43 4.18
996 1033 1.833434 CGACTAGCCTAGCGACTCGG 61.833 65.000 9.11 0.00 0.00 4.63
1026 1063 3.692406 GTCTTCCCCCGTGACGCT 61.692 66.667 0.00 0.00 0.00 5.07
1071 1108 4.922719 ACGAGGCTAAGAAAATCTACGAG 58.077 43.478 0.00 0.00 0.00 4.18
1143 1186 2.895372 GATTACTGCCGCCACCCG 60.895 66.667 0.00 0.00 0.00 5.28
1162 1205 2.825387 GCGGCTGGCACATGATCA 60.825 61.111 0.00 0.00 42.87 2.92
1247 1290 1.468520 CCTTGTTACGATGCCCAAGTG 59.531 52.381 0.00 0.00 33.99 3.16
1248 1291 2.151202 CTTGTTACGATGCCCAAGTGT 58.849 47.619 0.00 0.00 31.79 3.55
1266 1309 2.304761 GTGTGGGACTACCTGGATCAAA 59.695 50.000 0.00 0.00 41.11 2.69
1401 1452 2.134933 GGACCAGATCCCCGACCTC 61.135 68.421 0.00 0.00 42.46 3.85
1413 1464 2.973899 GACCTCAGCTCGCTTCCA 59.026 61.111 0.00 0.00 0.00 3.53
1452 1503 3.023949 GCACATCCCGGCTGAGTCT 62.024 63.158 9.04 0.00 0.00 3.24
1509 1560 6.094603 AGGTACGTACGTTTTCTATGAGTGAT 59.905 38.462 27.92 0.00 0.00 3.06
1510 1561 7.280876 AGGTACGTACGTTTTCTATGAGTGATA 59.719 37.037 27.92 0.00 0.00 2.15
1511 1562 7.910162 GGTACGTACGTTTTCTATGAGTGATAA 59.090 37.037 27.92 0.00 0.00 1.75
1513 1564 7.533426 ACGTACGTTTTCTATGAGTGATAAGT 58.467 34.615 16.72 0.00 0.00 2.24
1514 1565 7.695618 ACGTACGTTTTCTATGAGTGATAAGTC 59.304 37.037 16.72 0.00 0.00 3.01
1517 1568 7.612677 ACGTTTTCTATGAGTGATAAGTCCTT 58.387 34.615 0.00 0.00 0.00 3.36
1518 1569 7.760340 ACGTTTTCTATGAGTGATAAGTCCTTC 59.240 37.037 0.00 0.00 0.00 3.46
1520 1571 9.436957 GTTTTCTATGAGTGATAAGTCCTTCAA 57.563 33.333 0.00 0.00 0.00 2.69
1532 1595 8.556589 TGATAAGTCCTTCAATTATTTCAGGGA 58.443 33.333 0.72 0.00 0.00 4.20
1537 1600 6.603201 GTCCTTCAATTATTTCAGGGATGTCA 59.397 38.462 0.72 0.00 0.00 3.58
1549 1612 2.695666 AGGGATGTCATGTAAGTCCTCG 59.304 50.000 0.00 0.00 0.00 4.63
1551 1614 3.243569 GGGATGTCATGTAAGTCCTCGAG 60.244 52.174 5.13 5.13 0.00 4.04
1553 1616 1.476891 TGTCATGTAAGTCCTCGAGCC 59.523 52.381 6.99 0.00 0.00 4.70
1556 1619 3.318275 GTCATGTAAGTCCTCGAGCCATA 59.682 47.826 6.99 0.00 0.00 2.74
1585 1648 6.713762 TGACATTCAAGTTCTGGAAATGTT 57.286 33.333 0.00 0.00 0.00 2.71
1587 1650 8.231692 TGACATTCAAGTTCTGGAAATGTTAA 57.768 30.769 0.00 0.00 0.00 2.01
1588 1651 8.859090 TGACATTCAAGTTCTGGAAATGTTAAT 58.141 29.630 0.00 0.00 0.00 1.40
1592 1655 9.860898 ATTCAAGTTCTGGAAATGTTAATAAGC 57.139 29.630 0.00 0.00 0.00 3.09
1597 1660 7.665559 AGTTCTGGAAATGTTAATAAGCTGTCA 59.334 33.333 0.00 0.00 0.00 3.58
1598 1661 8.462016 GTTCTGGAAATGTTAATAAGCTGTCAT 58.538 33.333 0.00 0.00 0.00 3.06
1599 1662 8.213518 TCTGGAAATGTTAATAAGCTGTCATC 57.786 34.615 0.00 0.00 0.00 2.92
1600 1663 8.049117 TCTGGAAATGTTAATAAGCTGTCATCT 58.951 33.333 0.00 0.00 0.00 2.90
1601 1664 7.988737 TGGAAATGTTAATAAGCTGTCATCTG 58.011 34.615 0.00 0.00 0.00 2.90
1602 1665 7.067372 TGGAAATGTTAATAAGCTGTCATCTGG 59.933 37.037 0.00 0.00 0.00 3.86
1605 1668 6.985188 TGTTAATAAGCTGTCATCTGGTTC 57.015 37.500 0.00 0.00 35.51 3.62
1607 1670 7.847096 TGTTAATAAGCTGTCATCTGGTTCTA 58.153 34.615 0.00 0.00 35.51 2.10
1608 1671 8.318412 TGTTAATAAGCTGTCATCTGGTTCTAA 58.682 33.333 0.00 0.00 35.51 2.10
1609 1672 9.162764 GTTAATAAGCTGTCATCTGGTTCTAAA 57.837 33.333 0.00 0.00 35.51 1.85
1610 1673 7.617041 AATAAGCTGTCATCTGGTTCTAAAC 57.383 36.000 0.00 0.00 35.51 2.01
1622 1685 2.583143 GTTCTAAACCAGTGCAACCCT 58.417 47.619 0.00 0.00 37.80 4.34
1623 1686 3.746940 GTTCTAAACCAGTGCAACCCTA 58.253 45.455 0.00 0.00 37.80 3.53
1624 1687 3.695830 TCTAAACCAGTGCAACCCTAG 57.304 47.619 0.00 0.00 37.80 3.02
1625 1688 3.244582 TCTAAACCAGTGCAACCCTAGA 58.755 45.455 0.00 0.00 37.80 2.43
1626 1689 3.649023 TCTAAACCAGTGCAACCCTAGAA 59.351 43.478 0.00 0.00 37.80 2.10
1627 1690 3.525800 AAACCAGTGCAACCCTAGAAT 57.474 42.857 0.00 0.00 37.80 2.40
1628 1691 4.650972 AAACCAGTGCAACCCTAGAATA 57.349 40.909 0.00 0.00 37.80 1.75
1629 1692 3.914426 ACCAGTGCAACCCTAGAATAG 57.086 47.619 0.00 0.00 37.80 1.73
1630 1693 2.092914 ACCAGTGCAACCCTAGAATAGC 60.093 50.000 0.00 0.00 37.37 2.97
1631 1694 2.565841 CAGTGCAACCCTAGAATAGCC 58.434 52.381 0.00 0.00 37.37 3.93
1632 1695 1.490910 AGTGCAACCCTAGAATAGCCC 59.509 52.381 0.00 0.00 37.37 5.19
1633 1696 1.490910 GTGCAACCCTAGAATAGCCCT 59.509 52.381 0.00 0.00 37.37 5.19
1634 1697 2.092375 GTGCAACCCTAGAATAGCCCTT 60.092 50.000 0.00 0.00 37.37 3.95
1635 1698 2.092429 TGCAACCCTAGAATAGCCCTTG 60.092 50.000 0.00 0.00 37.37 3.61
1636 1699 2.749800 GCAACCCTAGAATAGCCCTTGG 60.750 54.545 0.00 0.00 37.37 3.61
1637 1700 2.777692 CAACCCTAGAATAGCCCTTGGA 59.222 50.000 0.00 0.00 37.37 3.53
1638 1701 2.409570 ACCCTAGAATAGCCCTTGGAC 58.590 52.381 0.00 0.00 37.37 4.02
1639 1702 1.700186 CCCTAGAATAGCCCTTGGACC 59.300 57.143 0.00 0.00 37.37 4.46
1640 1703 2.695585 CCTAGAATAGCCCTTGGACCT 58.304 52.381 0.00 0.00 37.37 3.85
1641 1704 3.439558 CCCTAGAATAGCCCTTGGACCTA 60.440 52.174 0.00 0.00 37.37 3.08
1642 1705 4.430441 CCTAGAATAGCCCTTGGACCTAT 58.570 47.826 0.00 0.00 37.37 2.57
1643 1706 5.520343 CCCTAGAATAGCCCTTGGACCTATA 60.520 48.000 0.00 0.00 37.37 1.31
1644 1707 6.206042 CCTAGAATAGCCCTTGGACCTATAT 58.794 44.000 0.00 0.00 37.37 0.86
1645 1708 6.674419 CCTAGAATAGCCCTTGGACCTATATT 59.326 42.308 0.00 0.00 37.37 1.28
1646 1709 7.182930 CCTAGAATAGCCCTTGGACCTATATTT 59.817 40.741 0.00 0.00 37.37 1.40
1647 1710 7.408013 AGAATAGCCCTTGGACCTATATTTT 57.592 36.000 0.00 0.00 0.00 1.82
1648 1711 7.234355 AGAATAGCCCTTGGACCTATATTTTG 58.766 38.462 0.00 0.00 0.00 2.44
1649 1712 3.566351 AGCCCTTGGACCTATATTTTGC 58.434 45.455 0.00 0.00 0.00 3.68
1650 1713 3.052944 AGCCCTTGGACCTATATTTTGCA 60.053 43.478 0.00 0.00 0.00 4.08
1651 1714 3.897505 GCCCTTGGACCTATATTTTGCAT 59.102 43.478 0.00 0.00 0.00 3.96
1652 1715 5.076873 GCCCTTGGACCTATATTTTGCATA 58.923 41.667 0.00 0.00 0.00 3.14
1653 1716 5.183904 GCCCTTGGACCTATATTTTGCATAG 59.816 44.000 0.00 0.00 0.00 2.23
1654 1717 5.183904 CCCTTGGACCTATATTTTGCATAGC 59.816 44.000 0.00 0.00 0.00 2.97
1655 1718 5.769662 CCTTGGACCTATATTTTGCATAGCA 59.230 40.000 0.00 0.00 36.47 3.49
1658 1721 8.932434 TTGGACCTATATTTTGCATAGCATAA 57.068 30.769 0.00 0.00 38.76 1.90
1661 1724 8.792633 GGACCTATATTTTGCATAGCATAACAA 58.207 33.333 0.00 0.00 38.76 2.83
1663 1726 8.299570 ACCTATATTTTGCATAGCATAACAAGC 58.700 33.333 0.00 0.00 38.76 4.01
1668 1731 6.757897 TTTGCATAGCATAACAAGCTTACT 57.242 33.333 0.00 0.00 43.25 2.24
1676 1739 7.921786 AGCATAACAAGCTTACTACATTTCA 57.078 32.000 0.00 0.00 39.87 2.69
1693 1756 3.848272 TTCAAAGATTTGGATGCCGAC 57.152 42.857 5.52 0.00 38.66 4.79
1709 1773 2.159282 GCCGACTTTCATAGTTCGAGGA 60.159 50.000 0.00 0.00 37.17 3.71
1715 1779 1.847328 TCATAGTTCGAGGACTGGCA 58.153 50.000 0.00 0.00 0.00 4.92
1753 1817 1.486310 TCAGGGATCTAAGCACGCAAT 59.514 47.619 0.00 0.00 0.00 3.56
1762 1826 7.072030 GGATCTAAGCACGCAATAACATTAAG 58.928 38.462 0.00 0.00 0.00 1.85
1781 1854 1.203052 AGGGCTTGCAACAATTCATCG 59.797 47.619 0.00 0.00 0.00 3.84
1903 1988 4.389576 CCAGTTCTGCAACGGCGC 62.390 66.667 6.90 0.00 45.35 6.53
1915 2000 0.107897 AACGGCGCCTCATTGTATGA 60.108 50.000 26.68 0.00 37.76 2.15
2002 2087 1.819288 CCTGACTTACGAGGAGCTCAA 59.181 52.381 17.19 0.00 0.00 3.02
2003 2088 2.428890 CCTGACTTACGAGGAGCTCAAT 59.571 50.000 17.19 2.72 0.00 2.57
2007 2092 0.901827 TTACGAGGAGCTCAATGCCA 59.098 50.000 17.19 0.00 44.23 4.92
2092 2182 1.186200 CGGAGTGGACAGGAAGATCA 58.814 55.000 0.00 0.00 0.00 2.92
2281 2371 2.158813 ACCAAGAGCAAGTTCGAAGGAA 60.159 45.455 0.00 0.00 0.00 3.36
2328 2418 5.950544 TCTCGGAAATCCCAAAGATCTAA 57.049 39.130 0.00 0.00 32.47 2.10
2337 2427 9.579932 GAAATCCCAAAGATCTAACATTCCTAT 57.420 33.333 0.00 0.00 32.47 2.57
2344 2437 6.161855 AGATCTAACATTCCTATGTCGCAA 57.838 37.500 0.00 0.00 44.14 4.85
2345 2438 6.582636 AGATCTAACATTCCTATGTCGCAAA 58.417 36.000 0.00 0.00 44.14 3.68
2405 2499 1.401018 GTTGTAAACTGCACCCGATGC 60.401 52.381 4.81 4.81 46.58 3.91
2450 2545 7.614124 AAAACTTGCAATGTTCTTGTTGATT 57.386 28.000 0.00 0.00 32.51 2.57
2479 2574 0.106519 ACCAGCTGGCAAGAAGTTGT 60.107 50.000 33.06 5.96 39.32 3.32
2518 2613 8.262933 GGCCTACTTAGTCTTAGGTATTTTTCA 58.737 37.037 0.00 0.00 37.73 2.69
2596 2691 7.806149 AATGATTGTATGCATCGCAATAATG 57.194 32.000 21.77 0.00 43.62 1.90
2618 2713 3.190118 GCAGAGACCAAGGATTTCAACTG 59.810 47.826 0.00 0.00 0.00 3.16
2626 2721 4.386652 CCAAGGATTTCAACTGCATTTTCG 59.613 41.667 0.00 0.00 0.00 3.46
2677 2773 9.399797 TGAATGAACTTCTACATGATTAAGCAT 57.600 29.630 0.00 0.00 34.75 3.79
2692 2788 2.103538 CATGATGGCGCCACAAGC 59.896 61.111 35.50 21.51 38.52 4.01
2708 2804 1.172812 AAGCCAAAGGACGCCAAGAC 61.173 55.000 0.00 0.00 0.00 3.01
2713 2809 0.182775 AAAGGACGCCAAGACCAAGT 59.817 50.000 0.00 0.00 37.13 3.16
2762 2858 9.913451 CAAAATAAGCGAATCAAAAGTTTCAAA 57.087 25.926 0.00 0.00 0.00 2.69
2765 2861 9.474920 AATAAGCGAATCAAAAGTTTCAAATGA 57.525 25.926 0.00 0.00 0.00 2.57
2774 2870 8.746922 TCAAAAGTTTCAAATGATATGAGCAC 57.253 30.769 0.00 0.00 0.00 4.40
2812 2910 8.828644 TGAACTAAAAAGTAAACAATAGCACGA 58.171 29.630 0.00 0.00 0.00 4.35
2814 2912 8.145316 ACTAAAAAGTAAACAATAGCACGACA 57.855 30.769 0.00 0.00 0.00 4.35
2824 2922 6.338214 ACAATAGCACGACATCATATCTCT 57.662 37.500 0.00 0.00 0.00 3.10
2825 2923 6.155136 ACAATAGCACGACATCATATCTCTG 58.845 40.000 0.00 0.00 0.00 3.35
2826 2924 3.023946 AGCACGACATCATATCTCTGC 57.976 47.619 0.00 0.00 0.00 4.26
2827 2925 1.718178 GCACGACATCATATCTCTGCG 59.282 52.381 0.00 0.00 0.00 5.18
2828 2926 2.860194 GCACGACATCATATCTCTGCGT 60.860 50.000 0.00 0.00 0.00 5.24
2829 2927 2.723143 CACGACATCATATCTCTGCGTG 59.277 50.000 0.00 0.00 41.17 5.34
2830 2928 2.359214 ACGACATCATATCTCTGCGTGT 59.641 45.455 0.00 0.00 0.00 4.49
2831 2929 2.723143 CGACATCATATCTCTGCGTGTG 59.277 50.000 0.00 0.00 0.00 3.82
2832 2930 3.055591 GACATCATATCTCTGCGTGTGG 58.944 50.000 0.00 0.00 0.00 4.17
2833 2931 1.797046 CATCATATCTCTGCGTGTGGC 59.203 52.381 0.00 0.00 43.96 5.01
2850 2948 4.504916 CGCTCACCCCGCTCTCTG 62.505 72.222 0.00 0.00 0.00 3.35
2851 2949 4.828925 GCTCACCCCGCTCTCTGC 62.829 72.222 0.00 0.00 38.57 4.26
2852 2950 3.073735 CTCACCCCGCTCTCTGCT 61.074 66.667 0.00 0.00 40.11 4.24
2853 2951 2.604686 TCACCCCGCTCTCTGCTT 60.605 61.111 0.00 0.00 40.11 3.91
2854 2952 2.435586 CACCCCGCTCTCTGCTTG 60.436 66.667 0.00 0.00 40.11 4.01
2855 2953 2.925170 ACCCCGCTCTCTGCTTGT 60.925 61.111 0.00 0.00 40.11 3.16
2856 2954 2.435586 CCCCGCTCTCTGCTTGTG 60.436 66.667 0.00 0.00 40.11 3.33
2857 2955 2.435586 CCCGCTCTCTGCTTGTGG 60.436 66.667 0.00 0.00 40.11 4.17
2858 2956 2.435586 CCGCTCTCTGCTTGTGGG 60.436 66.667 0.00 0.00 40.11 4.61
2859 2957 3.123620 CGCTCTCTGCTTGTGGGC 61.124 66.667 0.00 0.00 40.11 5.36
2860 2958 2.749441 GCTCTCTGCTTGTGGGCC 60.749 66.667 0.00 0.00 38.95 5.80
2861 2959 2.435586 CTCTCTGCTTGTGGGCCG 60.436 66.667 0.00 0.00 0.00 6.13
2862 2960 3.965539 CTCTCTGCTTGTGGGCCGG 62.966 68.421 0.00 0.00 0.00 6.13
2882 2980 3.976704 CCAGTGAGGGGCATGTTAA 57.023 52.632 0.00 0.00 0.00 2.01
2883 2981 1.755179 CCAGTGAGGGGCATGTTAAG 58.245 55.000 0.00 0.00 0.00 1.85
2884 2982 1.683011 CCAGTGAGGGGCATGTTAAGG 60.683 57.143 0.00 0.00 0.00 2.69
2885 2983 1.281867 CAGTGAGGGGCATGTTAAGGA 59.718 52.381 0.00 0.00 0.00 3.36
2886 2984 1.561542 AGTGAGGGGCATGTTAAGGAG 59.438 52.381 0.00 0.00 0.00 3.69
2887 2985 0.255890 TGAGGGGCATGTTAAGGAGC 59.744 55.000 0.00 0.00 0.00 4.70
2888 2986 0.815615 GAGGGGCATGTTAAGGAGCG 60.816 60.000 0.00 0.00 0.00 5.03
2889 2987 1.823899 GGGGCATGTTAAGGAGCGG 60.824 63.158 0.00 0.00 0.00 5.52
2890 2988 1.077716 GGGCATGTTAAGGAGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
2891 2989 0.679960 GGGCATGTTAAGGAGCGGTT 60.680 55.000 0.00 0.00 0.00 4.44
2892 2990 1.173913 GGCATGTTAAGGAGCGGTTT 58.826 50.000 0.00 0.00 0.00 3.27
2893 2991 1.544246 GGCATGTTAAGGAGCGGTTTT 59.456 47.619 0.00 0.00 0.00 2.43
2894 2992 2.415491 GGCATGTTAAGGAGCGGTTTTC 60.415 50.000 0.00 0.00 0.00 2.29
2895 2993 2.488153 GCATGTTAAGGAGCGGTTTTCT 59.512 45.455 0.00 0.00 0.00 2.52
2896 2994 3.687698 GCATGTTAAGGAGCGGTTTTCTA 59.312 43.478 0.00 0.00 0.00 2.10
2897 2995 4.335594 GCATGTTAAGGAGCGGTTTTCTAT 59.664 41.667 0.00 0.00 0.00 1.98
2898 2996 5.730568 GCATGTTAAGGAGCGGTTTTCTATG 60.731 44.000 0.00 0.00 0.00 2.23
2899 2997 4.258543 TGTTAAGGAGCGGTTTTCTATGG 58.741 43.478 0.00 0.00 0.00 2.74
2900 2998 4.020039 TGTTAAGGAGCGGTTTTCTATGGA 60.020 41.667 0.00 0.00 0.00 3.41
2901 2999 3.933861 AAGGAGCGGTTTTCTATGGAT 57.066 42.857 0.00 0.00 0.00 3.41
2902 3000 3.933861 AGGAGCGGTTTTCTATGGATT 57.066 42.857 0.00 0.00 0.00 3.01
2903 3001 4.236527 AGGAGCGGTTTTCTATGGATTT 57.763 40.909 0.00 0.00 0.00 2.17
2904 3002 4.600062 AGGAGCGGTTTTCTATGGATTTT 58.400 39.130 0.00 0.00 0.00 1.82
2905 3003 4.640647 AGGAGCGGTTTTCTATGGATTTTC 59.359 41.667 0.00 0.00 0.00 2.29
2906 3004 4.640647 GGAGCGGTTTTCTATGGATTTTCT 59.359 41.667 0.00 0.00 0.00 2.52
2907 3005 5.125578 GGAGCGGTTTTCTATGGATTTTCTT 59.874 40.000 0.00 0.00 0.00 2.52
2908 3006 6.350194 GGAGCGGTTTTCTATGGATTTTCTTT 60.350 38.462 0.00 0.00 0.00 2.52
2909 3007 6.621613 AGCGGTTTTCTATGGATTTTCTTTC 58.378 36.000 0.00 0.00 0.00 2.62
2910 3008 6.208599 AGCGGTTTTCTATGGATTTTCTTTCA 59.791 34.615 0.00 0.00 0.00 2.69
2911 3009 7.035612 GCGGTTTTCTATGGATTTTCTTTCAT 58.964 34.615 0.00 0.00 0.00 2.57
2912 3010 7.545615 GCGGTTTTCTATGGATTTTCTTTCATT 59.454 33.333 0.00 0.00 0.00 2.57
2913 3011 9.423061 CGGTTTTCTATGGATTTTCTTTCATTT 57.577 29.630 0.00 0.00 0.00 2.32
2944 3042 9.942850 TTTTTCTTTTTCTTGGATTCTCTTTGT 57.057 25.926 0.00 0.00 0.00 2.83
2945 3043 9.942850 TTTTCTTTTTCTTGGATTCTCTTTGTT 57.057 25.926 0.00 0.00 0.00 2.83
2946 3044 9.942850 TTTCTTTTTCTTGGATTCTCTTTGTTT 57.057 25.926 0.00 0.00 0.00 2.83
2947 3045 9.942850 TTCTTTTTCTTGGATTCTCTTTGTTTT 57.057 25.926 0.00 0.00 0.00 2.43
3058 3156 8.659925 TTTTCATGCACATTGTACATTTTTCT 57.340 26.923 0.00 0.00 0.00 2.52
3059 3157 8.659925 TTTCATGCACATTGTACATTTTTCTT 57.340 26.923 0.00 0.00 0.00 2.52
3060 3158 9.755804 TTTCATGCACATTGTACATTTTTCTTA 57.244 25.926 0.00 0.00 0.00 2.10
3061 3159 9.926158 TTCATGCACATTGTACATTTTTCTTAT 57.074 25.926 0.00 0.00 0.00 1.73
3062 3160 9.356433 TCATGCACATTGTACATTTTTCTTATG 57.644 29.630 0.00 0.00 0.00 1.90
3063 3161 7.579589 TGCACATTGTACATTTTTCTTATGC 57.420 32.000 0.00 0.00 0.00 3.14
3064 3162 7.150640 TGCACATTGTACATTTTTCTTATGCA 58.849 30.769 0.00 0.00 34.68 3.96
3065 3163 7.116090 TGCACATTGTACATTTTTCTTATGCAC 59.884 33.333 0.00 0.00 32.31 4.57
3066 3164 7.116090 GCACATTGTACATTTTTCTTATGCACA 59.884 33.333 0.00 0.00 29.67 4.57
3067 3165 8.976471 CACATTGTACATTTTTCTTATGCACAA 58.024 29.630 0.00 0.00 41.17 3.33
3068 3166 9.195411 ACATTGTACATTTTTCTTATGCACAAG 57.805 29.630 0.00 0.00 40.60 3.16
3069 3167 8.649841 CATTGTACATTTTTCTTATGCACAAGG 58.350 33.333 4.61 0.00 40.60 3.61
3070 3168 7.517614 TGTACATTTTTCTTATGCACAAGGA 57.482 32.000 4.61 0.00 28.87 3.36
3071 3169 7.946207 TGTACATTTTTCTTATGCACAAGGAA 58.054 30.769 4.61 0.00 28.87 3.36
3072 3170 7.865385 TGTACATTTTTCTTATGCACAAGGAAC 59.135 33.333 4.61 0.00 28.87 3.62
3073 3171 6.815089 ACATTTTTCTTATGCACAAGGAACA 58.185 32.000 4.61 0.00 0.00 3.18
3074 3172 7.444299 ACATTTTTCTTATGCACAAGGAACAT 58.556 30.769 4.61 0.00 0.00 2.71
3075 3173 7.933033 ACATTTTTCTTATGCACAAGGAACATT 59.067 29.630 4.61 0.00 0.00 2.71
3076 3174 8.776470 CATTTTTCTTATGCACAAGGAACATTT 58.224 29.630 4.61 0.00 0.00 2.32
3077 3175 8.729805 TTTTTCTTATGCACAAGGAACATTTT 57.270 26.923 4.61 0.00 0.00 1.82
3078 3176 8.729805 TTTTCTTATGCACAAGGAACATTTTT 57.270 26.923 4.61 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.108615 CGGAGAATCTGCTTGACGGT 60.109 55.000 0.00 0.00 32.86 4.83
16 17 3.194542 GCCACAGATATAGCGGAGAATCT 59.805 47.826 0.00 0.00 33.73 2.40
90 91 3.034635 CCTAGTCTGCATTGGAGTAGGT 58.965 50.000 20.07 0.00 45.13 3.08
99 100 2.190578 GCCCGCCTAGTCTGCATT 59.809 61.111 0.00 0.00 0.00 3.56
145 146 5.281314 AGGGTCCAAGATAGACACAATAGT 58.719 41.667 0.00 0.00 40.27 2.12
187 188 2.629050 GATCGTAGGCTGCCGCTTGA 62.629 60.000 13.96 10.49 36.09 3.02
204 205 0.682532 TCAGCACTGGAGCGAGAGAT 60.683 55.000 0.00 0.00 40.15 2.75
212 213 1.218585 CTCAGCCTCAGCACTGGAG 59.781 63.158 0.00 0.00 43.56 3.86
285 286 2.828520 CAACAGGACAAGAGAGCTCCTA 59.171 50.000 10.93 0.00 32.27 2.94
299 300 0.037326 GAGATGCACGGTCAACAGGA 60.037 55.000 0.00 0.00 0.00 3.86
319 320 2.132762 GATTATGCACCGGGTTAGACG 58.867 52.381 6.32 0.00 0.00 4.18
321 322 2.033372 TCGATTATGCACCGGGTTAGA 58.967 47.619 6.32 0.00 0.00 2.10
322 323 2.519377 TCGATTATGCACCGGGTTAG 57.481 50.000 6.32 0.00 0.00 2.34
323 324 2.549134 CCATCGATTATGCACCGGGTTA 60.549 50.000 6.32 0.00 33.92 2.85
324 325 1.593196 CATCGATTATGCACCGGGTT 58.407 50.000 6.32 0.00 0.00 4.11
327 328 1.148310 GTCCATCGATTATGCACCGG 58.852 55.000 0.00 0.00 33.92 5.28
328 329 1.148310 GGTCCATCGATTATGCACCG 58.852 55.000 0.00 0.00 36.67 4.94
336 373 4.717877 TCAATATGCTTGGTCCATCGATT 58.282 39.130 0.00 0.00 0.00 3.34
392 429 5.577945 GTGCAAAACATGAATATGTCCAAGG 59.422 40.000 0.00 0.00 46.54 3.61
406 443 2.561478 AGTAGGGACGTGCAAAACAT 57.439 45.000 9.96 0.00 0.00 2.71
419 456 3.987220 CGGCAAATTGTTGAAAAGTAGGG 59.013 43.478 0.00 0.00 36.83 3.53
427 464 7.148000 TGGTTATGATATCGGCAAATTGTTGAA 60.148 33.333 0.00 0.00 36.83 2.69
428 465 6.319911 TGGTTATGATATCGGCAAATTGTTGA 59.680 34.615 0.00 0.00 36.83 3.18
449 486 1.303317 CGTAGGCAAGCCCTTGGTT 60.303 57.895 7.62 0.00 43.06 3.67
582 619 5.644636 CACGGGCCTTAACTATACAAGAAAA 59.355 40.000 0.84 0.00 0.00 2.29
585 622 3.133362 CCACGGGCCTTAACTATACAAGA 59.867 47.826 0.84 0.00 0.00 3.02
601 638 0.604511 GTACAAAGGTGGACCACGGG 60.605 60.000 18.40 9.76 38.89 5.28
603 640 2.073816 GATGTACAAAGGTGGACCACG 58.926 52.381 18.40 7.10 37.87 4.94
608 645 8.185506 ACGTATATATGATGTACAAAGGTGGA 57.814 34.615 8.98 0.00 0.00 4.02
634 671 4.503910 TGTATTGCTCTTCGTGCATAAGT 58.496 39.130 10.50 0.00 40.34 2.24
636 673 4.209080 CGATGTATTGCTCTTCGTGCATAA 59.791 41.667 0.00 0.00 40.34 1.90
667 704 7.833682 TCATTGGGAGTTAATGTATGATGTTGT 59.166 33.333 0.00 0.00 36.97 3.32
668 705 8.224389 TCATTGGGAGTTAATGTATGATGTTG 57.776 34.615 0.00 0.00 36.97 3.33
669 706 9.425248 AATCATTGGGAGTTAATGTATGATGTT 57.575 29.630 0.00 0.00 36.97 2.71
674 711 8.685427 TGTTGAATCATTGGGAGTTAATGTATG 58.315 33.333 0.00 0.00 36.97 2.39
675 712 8.821686 TGTTGAATCATTGGGAGTTAATGTAT 57.178 30.769 0.00 0.00 36.97 2.29
676 713 7.339212 CCTGTTGAATCATTGGGAGTTAATGTA 59.661 37.037 0.00 0.00 36.97 2.29
677 714 6.153340 CCTGTTGAATCATTGGGAGTTAATGT 59.847 38.462 0.00 0.00 36.97 2.71
678 715 6.377996 TCCTGTTGAATCATTGGGAGTTAATG 59.622 38.462 0.00 0.00 36.98 1.90
679 716 6.493166 TCCTGTTGAATCATTGGGAGTTAAT 58.507 36.000 0.00 0.00 0.00 1.40
680 717 5.886609 TCCTGTTGAATCATTGGGAGTTAA 58.113 37.500 0.00 0.00 0.00 2.01
681 718 5.512942 TCCTGTTGAATCATTGGGAGTTA 57.487 39.130 0.00 0.00 0.00 2.24
682 719 4.387026 TCCTGTTGAATCATTGGGAGTT 57.613 40.909 0.00 0.00 0.00 3.01
683 720 4.598036 ATCCTGTTGAATCATTGGGAGT 57.402 40.909 5.25 0.00 0.00 3.85
684 721 4.518211 GCTATCCTGTTGAATCATTGGGAG 59.482 45.833 5.25 2.19 0.00 4.30
685 722 4.464008 GCTATCCTGTTGAATCATTGGGA 58.536 43.478 2.23 2.23 0.00 4.37
686 723 3.251729 CGCTATCCTGTTGAATCATTGGG 59.748 47.826 0.00 0.00 0.00 4.12
687 724 3.304257 GCGCTATCCTGTTGAATCATTGG 60.304 47.826 0.00 0.00 0.00 3.16
688 725 3.313249 TGCGCTATCCTGTTGAATCATTG 59.687 43.478 9.73 0.00 0.00 2.82
689 726 3.544684 TGCGCTATCCTGTTGAATCATT 58.455 40.909 9.73 0.00 0.00 2.57
690 727 3.136763 CTGCGCTATCCTGTTGAATCAT 58.863 45.455 9.73 0.00 0.00 2.45
691 728 2.168313 TCTGCGCTATCCTGTTGAATCA 59.832 45.455 9.73 0.00 0.00 2.57
692 729 2.826428 TCTGCGCTATCCTGTTGAATC 58.174 47.619 9.73 0.00 0.00 2.52
693 730 2.988010 TCTGCGCTATCCTGTTGAAT 57.012 45.000 9.73 0.00 0.00 2.57
694 731 2.760634 TTCTGCGCTATCCTGTTGAA 57.239 45.000 9.73 0.00 0.00 2.69
695 732 2.168313 TGATTCTGCGCTATCCTGTTGA 59.832 45.455 9.73 0.00 0.00 3.18
696 733 2.543012 CTGATTCTGCGCTATCCTGTTG 59.457 50.000 9.73 0.00 0.00 3.33
697 734 2.432146 TCTGATTCTGCGCTATCCTGTT 59.568 45.455 9.73 0.00 0.00 3.16
698 735 2.034878 TCTGATTCTGCGCTATCCTGT 58.965 47.619 9.73 0.00 0.00 4.00
699 736 2.808523 TCTGATTCTGCGCTATCCTG 57.191 50.000 9.73 5.45 0.00 3.86
700 737 2.896044 TGATCTGATTCTGCGCTATCCT 59.104 45.455 9.73 0.00 0.00 3.24
701 738 3.309961 TGATCTGATTCTGCGCTATCC 57.690 47.619 9.73 0.00 0.00 2.59
702 739 4.746729 AGATGATCTGATTCTGCGCTATC 58.253 43.478 9.73 9.73 0.00 2.08
703 740 4.463539 AGAGATGATCTGATTCTGCGCTAT 59.536 41.667 9.73 0.00 36.69 2.97
704 741 3.825585 AGAGATGATCTGATTCTGCGCTA 59.174 43.478 9.73 0.00 36.69 4.26
705 742 2.629137 AGAGATGATCTGATTCTGCGCT 59.371 45.455 9.73 0.00 36.69 5.92
706 743 3.029320 AGAGATGATCTGATTCTGCGC 57.971 47.619 0.00 0.00 36.69 6.09
707 744 4.209495 CACAAGAGATGATCTGATTCTGCG 59.791 45.833 0.00 0.00 38.67 5.18
708 745 4.024725 GCACAAGAGATGATCTGATTCTGC 60.025 45.833 0.00 0.81 38.67 4.26
709 746 4.512198 GGCACAAGAGATGATCTGATTCTG 59.488 45.833 0.00 0.00 38.67 3.02
710 747 4.163649 TGGCACAAGAGATGATCTGATTCT 59.836 41.667 0.00 0.00 38.67 2.40
711 748 4.449131 TGGCACAAGAGATGATCTGATTC 58.551 43.478 0.00 0.00 38.67 2.52
712 749 4.498894 TGGCACAAGAGATGATCTGATT 57.501 40.909 0.00 0.00 38.67 2.57
731 768 3.750373 ATCGATTCGGCCCCGTTGG 62.750 63.158 6.18 0.00 40.74 3.77
732 769 2.203015 ATCGATTCGGCCCCGTTG 60.203 61.111 6.18 0.00 40.74 4.10
733 770 2.108362 GATCGATTCGGCCCCGTT 59.892 61.111 6.18 0.00 40.74 4.44
734 771 4.280494 CGATCGATTCGGCCCCGT 62.280 66.667 10.26 0.00 44.28 5.28
736 773 2.355956 GTCGATCGATTCGGCCCC 60.356 66.667 22.50 1.33 46.75 5.80
742 779 3.166489 AGAAACCCTGTCGATCGATTC 57.834 47.619 22.50 18.41 0.00 2.52
743 780 3.522553 GAAGAAACCCTGTCGATCGATT 58.477 45.455 22.50 10.21 0.00 3.34
744 781 2.479730 CGAAGAAACCCTGTCGATCGAT 60.480 50.000 22.50 2.43 35.54 3.59
745 782 1.135489 CGAAGAAACCCTGTCGATCGA 60.135 52.381 15.15 15.15 35.54 3.59
746 783 1.269166 CGAAGAAACCCTGTCGATCG 58.731 55.000 9.36 9.36 35.54 3.69
747 784 1.993370 CACGAAGAAACCCTGTCGATC 59.007 52.381 0.00 0.00 36.98 3.69
748 785 1.939838 GCACGAAGAAACCCTGTCGAT 60.940 52.381 0.00 0.00 36.98 3.59
749 786 0.599204 GCACGAAGAAACCCTGTCGA 60.599 55.000 0.00 0.00 36.98 4.20
750 787 0.878523 TGCACGAAGAAACCCTGTCG 60.879 55.000 0.00 0.00 39.37 4.35
751 788 0.586802 GTGCACGAAGAAACCCTGTC 59.413 55.000 0.00 0.00 0.00 3.51
752 789 0.107410 TGTGCACGAAGAAACCCTGT 60.107 50.000 13.13 0.00 0.00 4.00
753 790 1.021202 TTGTGCACGAAGAAACCCTG 58.979 50.000 13.13 0.00 0.00 4.45
754 791 1.757682 TTTGTGCACGAAGAAACCCT 58.242 45.000 15.77 0.00 0.00 4.34
755 792 2.190161 GTTTTGTGCACGAAGAAACCC 58.810 47.619 18.69 1.04 0.00 4.11
756 793 2.851824 CTGTTTTGTGCACGAAGAAACC 59.148 45.455 18.69 4.03 31.11 3.27
757 794 2.278875 GCTGTTTTGTGCACGAAGAAAC 59.721 45.455 18.69 20.19 0.00 2.78
758 795 2.163412 AGCTGTTTTGTGCACGAAGAAA 59.837 40.909 18.69 7.73 0.00 2.52
759 796 1.742831 AGCTGTTTTGTGCACGAAGAA 59.257 42.857 18.69 10.71 0.00 2.52
760 797 1.378531 AGCTGTTTTGTGCACGAAGA 58.621 45.000 18.69 10.43 0.00 2.87
761 798 3.242739 ACTTAGCTGTTTTGTGCACGAAG 60.243 43.478 18.69 9.50 0.00 3.79
764 801 2.031560 TGACTTAGCTGTTTTGTGCACG 59.968 45.455 13.13 0.00 0.00 5.34
793 830 1.410517 GGATCGCTTGGTGATCTCAGA 59.589 52.381 16.97 0.00 45.52 3.27
799 836 0.179073 CGGAAGGATCGCTTGGTGAT 60.179 55.000 1.70 0.00 35.33 3.06
816 853 0.447801 CCTTTCTTGCGGATTGACGG 59.552 55.000 0.00 0.00 0.00 4.79
818 855 1.131315 GCTCCTTTCTTGCGGATTGAC 59.869 52.381 0.00 0.00 0.00 3.18
837 874 3.449018 TCTCTTAGTCTCCTCCACATTGC 59.551 47.826 0.00 0.00 0.00 3.56
846 883 4.223477 ACTCGTACACTCTCTTAGTCTCCT 59.777 45.833 0.00 0.00 35.76 3.69
867 904 4.940046 TGCTAGCTCGTACAGTAGTAAACT 59.060 41.667 17.23 0.00 39.81 2.66
868 905 5.163774 ACTGCTAGCTCGTACAGTAGTAAAC 60.164 44.000 17.23 0.00 41.41 2.01
874 911 7.558161 TTTTATACTGCTAGCTCGTACAGTA 57.442 36.000 17.23 13.85 46.42 2.74
875 912 6.446781 TTTTATACTGCTAGCTCGTACAGT 57.553 37.500 17.23 12.03 45.02 3.55
876 913 7.932120 AATTTTATACTGCTAGCTCGTACAG 57.068 36.000 17.23 6.10 36.22 2.74
877 914 8.627403 ACTAATTTTATACTGCTAGCTCGTACA 58.373 33.333 17.23 4.02 0.00 2.90
939 976 0.645355 CGCGGTGCTGTAGTGTAATG 59.355 55.000 0.00 0.00 0.00 1.90
973 1010 2.807392 GAGTCGCTAGGCTAGTCGTAAT 59.193 50.000 26.05 17.76 28.74 1.89
980 1017 2.262303 CCCCGAGTCGCTAGGCTAG 61.262 68.421 17.33 17.33 28.74 3.42
995 1032 0.464554 GAAGACAGTAGCCATGCCCC 60.465 60.000 0.00 0.00 0.00 5.80
996 1033 0.464554 GGAAGACAGTAGCCATGCCC 60.465 60.000 0.00 0.00 0.00 5.36
1071 1108 1.374758 CACCACTCTCCGTGCTTCC 60.375 63.158 0.00 0.00 42.42 3.46
1124 1167 2.516225 GGTGGCGGCAGTAATCCC 60.516 66.667 13.91 4.85 0.00 3.85
1162 1205 2.124570 GCTCACCATGACCGGCAT 60.125 61.111 0.00 2.95 37.85 4.40
1247 1290 2.681097 GCTTTGATCCAGGTAGTCCCAC 60.681 54.545 0.00 0.00 34.66 4.61
1248 1291 1.559682 GCTTTGATCCAGGTAGTCCCA 59.440 52.381 0.00 0.00 34.66 4.37
1266 1309 2.506061 CGCAGCATAGAGGAGGGCT 61.506 63.158 0.00 0.00 36.99 5.19
1432 1483 4.147449 CTCAGCCGGGATGTGCGA 62.147 66.667 12.67 0.00 0.00 5.10
1452 1503 2.847234 ACAACGGAGGGTGGCAGA 60.847 61.111 0.00 0.00 0.00 4.26
1509 1560 8.336235 ACATCCCTGAAATAATTGAAGGACTTA 58.664 33.333 0.00 0.00 0.00 2.24
1510 1561 7.184862 ACATCCCTGAAATAATTGAAGGACTT 58.815 34.615 0.00 0.00 0.00 3.01
1511 1562 6.735556 ACATCCCTGAAATAATTGAAGGACT 58.264 36.000 0.00 0.00 0.00 3.85
1513 1564 6.730447 TGACATCCCTGAAATAATTGAAGGA 58.270 36.000 0.00 0.00 0.00 3.36
1514 1565 7.069085 ACATGACATCCCTGAAATAATTGAAGG 59.931 37.037 0.00 0.00 0.00 3.46
1517 1568 9.123902 CTTACATGACATCCCTGAAATAATTGA 57.876 33.333 0.00 0.00 0.00 2.57
1518 1569 8.906867 ACTTACATGACATCCCTGAAATAATTG 58.093 33.333 0.00 0.00 0.00 2.32
1520 1571 7.721399 GGACTTACATGACATCCCTGAAATAAT 59.279 37.037 0.00 0.00 0.00 1.28
1522 1573 6.386927 AGGACTTACATGACATCCCTGAAATA 59.613 38.462 0.00 0.00 0.00 1.40
1523 1574 5.192522 AGGACTTACATGACATCCCTGAAAT 59.807 40.000 0.00 0.00 0.00 2.17
1524 1575 4.536090 AGGACTTACATGACATCCCTGAAA 59.464 41.667 0.00 0.00 0.00 2.69
1529 1592 2.693591 TCGAGGACTTACATGACATCCC 59.306 50.000 0.00 0.00 0.00 3.85
1532 1595 2.101582 GGCTCGAGGACTTACATGACAT 59.898 50.000 15.58 0.00 0.00 3.06
1537 1600 5.353394 TTTTATGGCTCGAGGACTTACAT 57.647 39.130 15.58 0.69 0.00 2.29
1561 1624 6.906157 ACATTTCCAGAACTTGAATGTCAT 57.094 33.333 0.00 0.00 0.00 3.06
1572 1635 7.816640 TGACAGCTTATTAACATTTCCAGAAC 58.183 34.615 0.00 0.00 0.00 3.01
1577 1640 7.067494 ACCAGATGACAGCTTATTAACATTTCC 59.933 37.037 0.00 0.00 0.00 3.13
1585 1648 8.718102 GTTTAGAACCAGATGACAGCTTATTA 57.282 34.615 0.00 0.00 0.00 0.98
1602 1665 2.583143 AGGGTTGCACTGGTTTAGAAC 58.417 47.619 0.00 0.00 0.00 3.01
1605 1668 3.695830 TCTAGGGTTGCACTGGTTTAG 57.304 47.619 0.00 0.00 0.00 1.85
1607 1670 3.525800 ATTCTAGGGTTGCACTGGTTT 57.474 42.857 0.00 0.00 0.00 3.27
1608 1671 3.622455 GCTATTCTAGGGTTGCACTGGTT 60.622 47.826 0.00 0.00 0.00 3.67
1609 1672 2.092914 GCTATTCTAGGGTTGCACTGGT 60.093 50.000 0.00 0.00 0.00 4.00
1610 1673 2.565841 GCTATTCTAGGGTTGCACTGG 58.434 52.381 0.00 0.00 0.00 4.00
1611 1674 2.565841 GGCTATTCTAGGGTTGCACTG 58.434 52.381 0.00 0.00 0.00 3.66
1612 1675 1.490910 GGGCTATTCTAGGGTTGCACT 59.509 52.381 0.00 0.00 0.00 4.40
1613 1676 1.490910 AGGGCTATTCTAGGGTTGCAC 59.509 52.381 0.00 0.00 0.00 4.57
1614 1677 1.893315 AGGGCTATTCTAGGGTTGCA 58.107 50.000 0.00 0.00 0.00 4.08
1615 1678 2.576615 CAAGGGCTATTCTAGGGTTGC 58.423 52.381 0.00 0.00 0.00 4.17
1616 1679 2.777692 TCCAAGGGCTATTCTAGGGTTG 59.222 50.000 0.00 0.00 0.00 3.77
1617 1680 2.778270 GTCCAAGGGCTATTCTAGGGTT 59.222 50.000 0.00 0.00 0.00 4.11
1618 1681 2.409570 GTCCAAGGGCTATTCTAGGGT 58.590 52.381 0.00 0.00 0.00 4.34
1619 1682 1.700186 GGTCCAAGGGCTATTCTAGGG 59.300 57.143 0.00 0.00 0.00 3.53
1620 1683 2.695585 AGGTCCAAGGGCTATTCTAGG 58.304 52.381 0.00 0.00 0.00 3.02
1621 1684 7.741554 AATATAGGTCCAAGGGCTATTCTAG 57.258 40.000 0.00 0.00 0.00 2.43
1622 1685 8.383175 CAAAATATAGGTCCAAGGGCTATTCTA 58.617 37.037 0.00 0.00 0.00 2.10
1623 1686 7.234355 CAAAATATAGGTCCAAGGGCTATTCT 58.766 38.462 0.00 0.00 0.00 2.40
1624 1687 6.071896 GCAAAATATAGGTCCAAGGGCTATTC 60.072 42.308 0.00 0.00 0.00 1.75
1625 1688 5.775195 GCAAAATATAGGTCCAAGGGCTATT 59.225 40.000 0.00 0.00 0.00 1.73
1626 1689 5.162991 TGCAAAATATAGGTCCAAGGGCTAT 60.163 40.000 0.00 0.00 0.00 2.97
1627 1690 4.167113 TGCAAAATATAGGTCCAAGGGCTA 59.833 41.667 0.00 0.00 0.00 3.93
1628 1691 3.052944 TGCAAAATATAGGTCCAAGGGCT 60.053 43.478 0.00 0.00 0.00 5.19
1629 1692 3.295973 TGCAAAATATAGGTCCAAGGGC 58.704 45.455 0.00 0.00 0.00 5.19
1630 1693 5.183904 GCTATGCAAAATATAGGTCCAAGGG 59.816 44.000 0.00 0.00 0.00 3.95
1631 1694 5.769662 TGCTATGCAAAATATAGGTCCAAGG 59.230 40.000 0.00 0.00 34.76 3.61
1632 1695 6.882610 TGCTATGCAAAATATAGGTCCAAG 57.117 37.500 0.00 0.00 34.76 3.61
1633 1696 8.792633 GTTATGCTATGCAAAATATAGGTCCAA 58.207 33.333 0.00 0.00 43.62 3.53
1634 1697 7.941790 TGTTATGCTATGCAAAATATAGGTCCA 59.058 33.333 0.00 0.00 43.62 4.02
1635 1698 8.335532 TGTTATGCTATGCAAAATATAGGTCC 57.664 34.615 0.00 0.00 43.62 4.46
1636 1699 9.831737 CTTGTTATGCTATGCAAAATATAGGTC 57.168 33.333 0.00 0.00 43.62 3.85
1637 1700 8.299570 GCTTGTTATGCTATGCAAAATATAGGT 58.700 33.333 0.00 0.00 43.62 3.08
1638 1701 8.517878 AGCTTGTTATGCTATGCAAAATATAGG 58.482 33.333 0.00 0.00 43.62 2.57
1639 1702 9.903682 AAGCTTGTTATGCTATGCAAAATATAG 57.096 29.630 0.00 0.00 43.62 1.31
1641 1704 9.683069 GTAAGCTTGTTATGCTATGCAAAATAT 57.317 29.630 9.86 0.00 43.62 1.28
1642 1705 8.902806 AGTAAGCTTGTTATGCTATGCAAAATA 58.097 29.630 9.86 0.00 43.62 1.40
1643 1706 7.775120 AGTAAGCTTGTTATGCTATGCAAAAT 58.225 30.769 9.86 0.00 43.62 1.82
1644 1707 7.156876 AGTAAGCTTGTTATGCTATGCAAAA 57.843 32.000 9.86 0.00 43.62 2.44
1645 1708 6.757897 AGTAAGCTTGTTATGCTATGCAAA 57.242 33.333 9.86 0.00 43.62 3.68
1646 1709 6.821160 TGTAGTAAGCTTGTTATGCTATGCAA 59.179 34.615 9.86 0.00 43.62 4.08
1647 1710 6.345298 TGTAGTAAGCTTGTTATGCTATGCA 58.655 36.000 9.86 0.00 44.86 3.96
1648 1711 6.844696 TGTAGTAAGCTTGTTATGCTATGC 57.155 37.500 9.86 0.00 40.22 3.14
1649 1712 9.869844 GAAATGTAGTAAGCTTGTTATGCTATG 57.130 33.333 9.86 0.00 40.22 2.23
1650 1713 9.613428 TGAAATGTAGTAAGCTTGTTATGCTAT 57.387 29.630 9.86 0.00 40.22 2.97
1651 1714 9.443323 TTGAAATGTAGTAAGCTTGTTATGCTA 57.557 29.630 9.86 0.00 40.22 3.49
1652 1715 7.921786 TGAAATGTAGTAAGCTTGTTATGCT 57.078 32.000 9.86 0.00 43.32 3.79
1653 1716 8.964420 TTTGAAATGTAGTAAGCTTGTTATGC 57.036 30.769 9.86 0.00 0.00 3.14
1658 1721 9.683069 CAAATCTTTGAAATGTAGTAAGCTTGT 57.317 29.630 9.86 0.00 40.55 3.16
1661 1724 8.635765 TCCAAATCTTTGAAATGTAGTAAGCT 57.364 30.769 4.25 0.00 40.55 3.74
1663 1726 9.294030 GCATCCAAATCTTTGAAATGTAGTAAG 57.706 33.333 4.25 0.00 40.55 2.34
1668 1731 5.417266 TCGGCATCCAAATCTTTGAAATGTA 59.583 36.000 4.25 0.00 40.55 2.29
1676 1739 3.826157 TGAAAGTCGGCATCCAAATCTTT 59.174 39.130 0.00 0.00 0.00 2.52
1693 1756 3.190874 GCCAGTCCTCGAACTATGAAAG 58.809 50.000 0.00 0.00 0.00 2.62
1709 1773 1.072266 TTTAGGGGTGTCATGCCAGT 58.928 50.000 0.00 0.00 0.00 4.00
1715 1779 4.344104 CCTGAATTGTTTAGGGGTGTCAT 58.656 43.478 0.00 0.00 0.00 3.06
1753 1817 5.736951 ATTGTTGCAAGCCCTTAATGTTA 57.263 34.783 0.00 0.00 0.00 2.41
1762 1826 1.067635 ACGATGAATTGTTGCAAGCCC 60.068 47.619 0.00 0.00 0.00 5.19
1781 1854 1.176527 AATACACCACCTGCATGCAC 58.823 50.000 18.46 0.00 0.00 4.57
1915 2000 4.379243 CGTGCTCCCAGAACGGCT 62.379 66.667 0.00 0.00 43.43 5.52
1956 2041 0.252284 ACCTGTCCCGGTCTCTCAAT 60.252 55.000 0.00 0.00 29.14 2.57
2036 2121 4.467084 GGGCGCCCGATGAACTCA 62.467 66.667 33.60 0.00 0.00 3.41
2086 2176 0.745845 GCACATGCCTCCGTGATCTT 60.746 55.000 0.00 0.00 35.02 2.40
2145 2235 4.748102 GGCATCTCAATTATTTCGGTCGTA 59.252 41.667 0.00 0.00 0.00 3.43
2157 2247 0.106569 TGGGCATCGGCATCTCAATT 60.107 50.000 0.00 0.00 43.71 2.32
2337 2427 5.116831 CGATTTCAAACATCAATTTGCGACA 59.883 36.000 0.00 0.00 39.08 4.35
2436 2531 8.241367 GGTATTCCGTTTAATCAACAAGAACAT 58.759 33.333 0.00 0.00 34.68 2.71
2450 2545 1.279558 TGCCAGCTGGTATTCCGTTTA 59.720 47.619 32.81 5.17 37.57 2.01
2479 2574 2.532843 AGTAGGCCTCTTCCGTAACAA 58.467 47.619 9.68 0.00 0.00 2.83
2596 2691 3.190118 CAGTTGAAATCCTTGGTCTCTGC 59.810 47.826 0.00 0.00 0.00 4.26
2602 2697 4.961438 AAATGCAGTTGAAATCCTTGGT 57.039 36.364 0.00 0.00 0.00 3.67
2639 2735 4.094146 GAAGTTCATTCAGAGCTGGTTAGC 59.906 45.833 0.00 0.00 42.84 3.09
2646 2742 6.291648 TCATGTAGAAGTTCATTCAGAGCT 57.708 37.500 5.50 0.00 40.67 4.09
2651 2747 8.791327 TGCTTAATCATGTAGAAGTTCATTCA 57.209 30.769 5.50 1.67 40.67 2.57
2658 2754 6.206243 GCCATCATGCTTAATCATGTAGAAGT 59.794 38.462 16.63 0.00 43.18 3.01
2692 2788 0.821711 TTGGTCTTGGCGTCCTTTGG 60.822 55.000 0.00 0.00 0.00 3.28
2708 2804 9.226606 TGAACTGGAAAATACTATACAACTTGG 57.773 33.333 0.00 0.00 0.00 3.61
2762 2858 4.748600 CGATGAACACAGTGCTCATATCAT 59.251 41.667 17.66 9.87 33.74 2.45
2765 2861 3.867493 CACGATGAACACAGTGCTCATAT 59.133 43.478 17.66 8.06 33.74 1.78
2790 2886 9.262472 GATGTCGTGCTATTGTTTACTTTTTAG 57.738 33.333 0.00 0.00 0.00 1.85
2797 2893 8.299262 AGATATGATGTCGTGCTATTGTTTAC 57.701 34.615 0.00 0.00 0.00 2.01
2798 2894 8.360390 AGAGATATGATGTCGTGCTATTGTTTA 58.640 33.333 0.00 0.00 0.00 2.01
2802 2900 5.061933 GCAGAGATATGATGTCGTGCTATTG 59.938 44.000 10.69 0.00 0.00 1.90
2805 2903 3.365364 CGCAGAGATATGATGTCGTGCTA 60.365 47.826 14.20 0.00 30.40 3.49
2807 2905 1.718178 CGCAGAGATATGATGTCGTGC 59.282 52.381 8.71 8.71 0.00 5.34
2812 2910 2.804572 GCCACACGCAGAGATATGATGT 60.805 50.000 0.00 0.00 37.47 3.06
2814 2912 1.603931 CGCCACACGCAGAGATATGAT 60.604 52.381 0.00 0.00 37.30 2.45
2833 2931 4.504916 CAGAGAGCGGGGTGAGCG 62.505 72.222 0.00 0.00 40.04 5.03
2834 2932 4.828925 GCAGAGAGCGGGGTGAGC 62.829 72.222 0.00 0.00 0.00 4.26
2843 2941 2.749441 GGCCCACAAGCAGAGAGC 60.749 66.667 0.00 0.00 46.19 4.09
2844 2942 2.435586 CGGCCCACAAGCAGAGAG 60.436 66.667 0.00 0.00 0.00 3.20
2845 2943 4.020617 CCGGCCCACAAGCAGAGA 62.021 66.667 0.00 0.00 0.00 3.10
2864 2962 1.683011 CCTTAACATGCCCCTCACTGG 60.683 57.143 0.00 0.00 0.00 4.00
2865 2963 1.281867 TCCTTAACATGCCCCTCACTG 59.718 52.381 0.00 0.00 0.00 3.66
2866 2964 1.561542 CTCCTTAACATGCCCCTCACT 59.438 52.381 0.00 0.00 0.00 3.41
2867 2965 2.019156 GCTCCTTAACATGCCCCTCAC 61.019 57.143 0.00 0.00 0.00 3.51
2868 2966 0.255890 GCTCCTTAACATGCCCCTCA 59.744 55.000 0.00 0.00 0.00 3.86
2869 2967 0.815615 CGCTCCTTAACATGCCCCTC 60.816 60.000 0.00 0.00 0.00 4.30
2870 2968 1.224592 CGCTCCTTAACATGCCCCT 59.775 57.895 0.00 0.00 0.00 4.79
2871 2969 1.823899 CCGCTCCTTAACATGCCCC 60.824 63.158 0.00 0.00 0.00 5.80
2872 2970 0.679960 AACCGCTCCTTAACATGCCC 60.680 55.000 0.00 0.00 0.00 5.36
2873 2971 1.173913 AAACCGCTCCTTAACATGCC 58.826 50.000 0.00 0.00 0.00 4.40
2874 2972 2.488153 AGAAAACCGCTCCTTAACATGC 59.512 45.455 0.00 0.00 0.00 4.06
2875 2973 5.220854 CCATAGAAAACCGCTCCTTAACATG 60.221 44.000 0.00 0.00 0.00 3.21
2876 2974 4.881850 CCATAGAAAACCGCTCCTTAACAT 59.118 41.667 0.00 0.00 0.00 2.71
2877 2975 4.020039 TCCATAGAAAACCGCTCCTTAACA 60.020 41.667 0.00 0.00 0.00 2.41
2878 2976 4.510571 TCCATAGAAAACCGCTCCTTAAC 58.489 43.478 0.00 0.00 0.00 2.01
2879 2977 4.829872 TCCATAGAAAACCGCTCCTTAA 57.170 40.909 0.00 0.00 0.00 1.85
2880 2978 5.367945 AATCCATAGAAAACCGCTCCTTA 57.632 39.130 0.00 0.00 0.00 2.69
2881 2979 3.933861 ATCCATAGAAAACCGCTCCTT 57.066 42.857 0.00 0.00 0.00 3.36
2882 2980 3.933861 AATCCATAGAAAACCGCTCCT 57.066 42.857 0.00 0.00 0.00 3.69
2883 2981 4.640647 AGAAAATCCATAGAAAACCGCTCC 59.359 41.667 0.00 0.00 0.00 4.70
2884 2982 5.819825 AGAAAATCCATAGAAAACCGCTC 57.180 39.130 0.00 0.00 0.00 5.03
2885 2983 6.208599 TGAAAGAAAATCCATAGAAAACCGCT 59.791 34.615 0.00 0.00 0.00 5.52
2886 2984 6.386654 TGAAAGAAAATCCATAGAAAACCGC 58.613 36.000 0.00 0.00 0.00 5.68
2887 2985 8.986477 AATGAAAGAAAATCCATAGAAAACCG 57.014 30.769 0.00 0.00 0.00 4.44
2918 3016 9.942850 ACAAAGAGAATCCAAGAAAAAGAAAAA 57.057 25.926 0.00 0.00 33.66 1.94
2919 3017 9.942850 AACAAAGAGAATCCAAGAAAAAGAAAA 57.057 25.926 0.00 0.00 33.66 2.29
2920 3018 9.942850 AAACAAAGAGAATCCAAGAAAAAGAAA 57.057 25.926 0.00 0.00 33.66 2.52
2921 3019 9.942850 AAAACAAAGAGAATCCAAGAAAAAGAA 57.057 25.926 0.00 0.00 33.66 2.52
3032 3130 9.107177 AGAAAAATGTACAATGTGCATGAAAAA 57.893 25.926 17.19 0.00 37.86 1.94
3033 3131 8.659925 AGAAAAATGTACAATGTGCATGAAAA 57.340 26.923 17.19 0.00 37.86 2.29
3034 3132 8.659925 AAGAAAAATGTACAATGTGCATGAAA 57.340 26.923 17.19 0.00 37.86 2.69
3035 3133 9.926158 ATAAGAAAAATGTACAATGTGCATGAA 57.074 25.926 17.19 0.18 37.86 2.57
3036 3134 9.356433 CATAAGAAAAATGTACAATGTGCATGA 57.644 29.630 17.19 0.00 37.86 3.07
3037 3135 8.111836 GCATAAGAAAAATGTACAATGTGCATG 58.888 33.333 17.19 4.86 37.86 4.06
3038 3136 7.818446 TGCATAAGAAAAATGTACAATGTGCAT 59.182 29.630 11.13 11.13 40.33 3.96
3039 3137 7.116090 GTGCATAAGAAAAATGTACAATGTGCA 59.884 33.333 6.63 6.63 39.08 4.57
3040 3138 7.116090 TGTGCATAAGAAAAATGTACAATGTGC 59.884 33.333 0.00 0.00 43.82 4.57
3041 3139 8.518151 TGTGCATAAGAAAAATGTACAATGTG 57.482 30.769 0.00 0.00 43.82 3.21
3046 3144 7.517614 TCCTTGTGCATAAGAAAAATGTACA 57.482 32.000 23.29 0.00 44.68 2.90
3047 3145 7.865385 TGTTCCTTGTGCATAAGAAAAATGTAC 59.135 33.333 23.29 10.25 39.52 2.90
3048 3146 7.946207 TGTTCCTTGTGCATAAGAAAAATGTA 58.054 30.769 23.29 0.00 0.00 2.29
3049 3147 6.815089 TGTTCCTTGTGCATAAGAAAAATGT 58.185 32.000 23.29 0.00 0.00 2.71
3050 3148 7.894376 ATGTTCCTTGTGCATAAGAAAAATG 57.106 32.000 23.29 6.65 0.00 2.32
3051 3149 8.907222 AAATGTTCCTTGTGCATAAGAAAAAT 57.093 26.923 23.29 8.37 0.00 1.82
3052 3150 8.729805 AAAATGTTCCTTGTGCATAAGAAAAA 57.270 26.923 23.29 6.12 0.00 1.94
3053 3151 8.729805 AAAAATGTTCCTTGTGCATAAGAAAA 57.270 26.923 23.29 14.13 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.