>input_sequence_58882
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----------------------------------------------------------------------------ATGG
CTACTGTCTTCCCCCGTGACGCTGGCGTCTCCACGCCGGAAGCCGACGAGGCTAAGAAAATCTACGAGGAAGCACGGAGA
GTGGTGTCCACCTACGAGACCGTTCCCAG------CGGAGCCCTGCGGGATTACTGCCGCCACCCGGGCGGCTGGCACAT
GATCATGCCGGTCATGGTGAGCTCCATGGTCGCAGAGCAGCACTTTGAGGCGCGTGGCACCGACGTGCTCCTTGTTACGA
TGCCCAAGTGTGGGACTACCTGGATCAAAGCCCTCCTCTATGCTGCGGCCCGCCGCACCGACGACACATCGTC---CATA
CTCCGGCAGCTCGCCTCCCACAACTCCCACCAGCTCGT-----TCCTTTCCTCGAGGCCCAGGTCTACACCAAGGACCAG
ATCCCCGACCTCAGCTCGCTTCCAGCGCCACGGCTCTTCGCCTCGCACATCCCGGCTGAGTCTCTGCCACCCTCCGTTGT
GGCGTCGGGCTGCAAGGTACGTACGTTTTCTATGAGTGATAAGTCCTTCAATTAT------------TTCAGGGATGTCA
TGTAAGTCCTCGAGCCATAAAAAATGACATTCAAGTTCTGGAAATGTTAATAAGCTGTCATCTGGTTCTAAACCAGTGCA
ACCCTAGAATAGCCCTTGGACCTATATTTTGCATAGCATAACAAGCTTACTACATTTCAAAGATTTGGATGCCGACT-TT
CATAGTTCGAGGACTGGCATGACACCCCTAAACAATTCAGGGATCTAAGCACGCAATAACATTAAGGGCTTGCAACAATT
---------CATCGTGCA------------TGCAGGTGGTGTATTTGTGTCGGGACCCCAAGGACTGCTTTGTGTCTCTC
TGGCACTTTATGAGCAAGTTCACCCCACGGGACATCGACGAGGCACACGACCAGTTCTGCAACGGCGCCTCATTGTATGA
GCCGTTCTGGGAGCACGTGCTGAGCTACTGGCGGTGGCACATTGAGAGACCGGGACAGGTGCTCTTCCTGACTTACGAGG
AGCTCAATGCCAACCCGCTCGGCCAGCTGAGGCGCCTTGCTGAGTTCATCGGGCGCCCCTTCA-----GGGGAGCAGGAG
GCCGGAGTGGACAGGAAGATCACGGAGGCATGTGCCATGAAGAGCATGGTCAACCAGGAGGTGAACCAGTCGGGTACGAC
CGAAATAATTGA--------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G249100
TGGGCTACCGTCAAGCAGATTCTCCGCTATATCTGTGGCACTATGGATCTTGGCGTCACGCTTCACGCCTCCGCCGACAC
CGCCCTCACCACCTACTCCAATGCAGACTAGGCGGGCTGCCCTGACACTCGTCGCTCCACTTCGGACTATTGTGTCTATC
TTGGACCCTCACTCATCTCGTGGTCGTTCAAGCGGCAGCCTACGATCTCTCGCTCCAGTGCTGAGGCTGAGTATCGTGCG
GTGGCCAACGCCGTCGCCGAGTGTTCGTGGCTTCGCCAGCTGCTTTAGGAGCTCTCTTGTCCTGTTGACCGTGCATCTCC
GTCTAACCC------------------------------------GGTGCATAATCGATGGACCAAGCATATTGAGTTGG
ATATTCATTTTGTTTGGGAATAGGTGGCCCTTGGACATATTCATGTTTTGCACGTCCCTACTTTTCAACAATTTGCCGAT
ATCATAACCAAGGGCTTGCCTACGGCGTCATTTGAGGAGTTCCGGTCCAGTCTTTGCGTCAGCCGCGGTGCCGCTTCGAC
TGTGGGGGGTGTTGAGTATATGTGTTATGTGCATATTGTGTATTGGGCCCGTCTCCTATTTTCTTGTATAGTTAAGGCCC
GTGGTCCACCTTTGTACATCATATATACGTACTTATGCACGAAGAGCAATACATCGTACAATTACAACATCATACATTAA
CTCCCAATGATTCAACAGGATAGCGCAGAATCAGATCATCTCTTGTGCCAACGGGGCCGAATCGATCGACAGGGTTTCTT
CGTGCACAAAACAGCTAAGTCAACGATTTTCTGAGATCACCAAGCGATCCTTCCGTCAATCCGCAAGAAAGGAGCAATGT
GGAGGAGACTAAGAGAGTGTACGAGTTTACTACTGTACGAGCTAGCAGTATAAAATTAGTAAAGCTATTGCTACTCAATA
CACAACCGGGCCCTGCATTACACTACAGCACCGCGCCTACACGCAACGAATTACGACTAGCCTAGCGACTCGGGGCATGG
CTACTGTCTTCCCCCGTGACGCTGGCGTCTCCACGCCGGAAGCCGACGAGGCTAAGAAAATCTACGAGGAAGCACGGAGA
GTGGTGTCCACCTACGAGACCGTTCCCAG------CGGAGCCCTGCGGGATTACTGCCGCCACCCGGGCGGCTGGCACAT
GATCATGCCGGTCATGGTGAGCTCCATGGTCGCAGAGCAGCACTTTGAGGCGCGTGGCACCGACGTGCTCCTTGTTACGA
TGCCCAAGTGTGGGACTACCTGGATCAAAGCCCTCCTCTATGCTGCGGCCCGCCGCACCGACGACACATCGTC---CATA
CTCCGGCAGCTCGCCTCCCACAACTCCCACCAGCTCGT-----TCCTTTCCTCGAGGCCCAGGTCTACACCAAGGACCAG
ATCCCCGACCTCAGCTCGCTTCCAGCGCCACGGCTCTTCGCCTCGCACATCCCGGCTGAGTCTCTGCCACCCTCCGTTGT
GGCGTCGGGCTGCAAGGTACGTACGTTTTCTATGAGTGATAAGTCCTTCAATTAT------------TTCAGGGATGTCA
TGTAAGTCCTCGAGCCATAAAAAATGACATTCAAGTTCTGGAAATGTTAATAAGCTGTCATCTGGTTCTAAACCAGTGCA
ACCCTAGAATAGCCCTTGGACCTATATTTTGCATAGCATAACAAGCTTACTACATTTCAAAGATTTGGATGCCGACT-TT
CATAGTTCGAGGACTGGCATGACACCCCTAAACAATTCAGGGATCTAAGCACGCAATAACATTAAGGGCTTGCAACAATT
---------CATCGTGCA------------TGCAGGTGGTGTATTTGTGTCGGGACCCCAAGGACTGCTTTGTGTCTCTC
TGGCACTTTATGAGCAAGTTCACCCCACGGGACATCGACGAGGCACACGACCAGTTCTGCAACGGCGCCTCATTGTATGA
GCCGTTCTGGGAGCACGTGCTGAGCTACTGGCGGTGGCACATTGAGAGACCGGGACAGGTGCTCTTCCTGACTTACGAGG
AGCTCAATGCCAACCCGCTCGGCCAGCTGAGGCGCCTTGCTGAGTTCATCGGGCGCCCCTTCA-----GGGGAGCAGGAG
GCCGGAGTGGACAGGAAGATCACGGAGGCATGTGCCATGAAGAGCATGGTCAACCAGGAGGTGAACCAGTCGGGTACGAC
CGAAATAATTGAGATGCCGATGCCCAACGGGGTCTCCTTCCGGCGCGGCGTGGTCGGAGACTGGACCAACTACCTCACGC
CAGAGATGGCGGGAAGGATTGATGAGATTACCAAGAGCAAGTTCGAAGGAACCGGCCTCATGCTGCCCAAAACAATCTCG
GAAATCCCAAAGATCTAACATTCCTAT---GTCGCAAATTGATGTTTGAAATCGTTTACCTTAATTTTCTTGCTCTTGTT
GTAAACTGCACCC-GATGCCATTGGTTTGGCTGAATAAAAAAA-CTTGCAATGTTCTTGTTGATTAAACGGAATACCAGC
TGGCAAGAAGTTGTTGTTACGGAAGAGGCCTACTTAGTCTTAGGTATTTTTCATATTGGTTTAATTGTGATCAAATATAT
TTGTACTCTGCTTAATTATTAATAAAAATGATTGTATGCATCGCAATAATGCAGAGACCAAGGATTTCAACTGCATTTTC
GAAAA-AAGAGAATGCTAACCAGCTCTGAATGAACTTCTACATGATTAAGCATGATGGCGCCACAAGCCAAAGGACGCCA
AGACCAAGTTGTATAGTATTTTCCAGTTCAACAAAATAAGCGAATCAAAAGTTTCAAATGATATGAGCACTGTGTTCATC
GTGAACTAAAAAGT--AAACAATAGCACGACATCATATCTCTGCGTGTGGCGCTCACCCCGCTCTCTGCTTGTGGGCCGG
CCCAGTGAGGGGCATGTTAAGGAGCGGTTTTCTATGGATTTTCTTTCATTTTCTTTTTTTCTTTTTCTTGGATTCTCTTT
GTTTTATTTTCATTCTCCTTTTTAAATAGATATGTATATTTCAAATACATTTATACCATTTTTGAAAAATATATGTATTG
ATATCTTGTTTTTTCATGCACATTGTACATTTTTCTTATGCACAAGGAACATTTTTTATATATATCCTTAACATTTTCAA
ATATATGATTACTTTTTTAAAAATATACTTTTTTATCTCTATATGTTGTCATACAGATTA
>chr4D_1
TGGGCTGCCGTCAAGCGGATTCTCCGCTATATCTGTGGCACTATGGATCTTGGCGTCACGCTTCACGCCTCCACCGACAC
CGCCCTCACCGCCTACTCCGATGCAGACTGGGCGGGCTGCCCTGACACTCGTCGCTCCACTTCGGGCTATTGTGTCTATC
TTGGACCCTCACTCATCTCGTGGTCGTCCAAGCGGCAGCCTACGGTCTCTCGTTCCAGTGCTGAGGCTGAGTATCGTGCG
GTAGCCAACGCCGTCGCCGAGTGTTCGTGGCTTCGCCAGCTGCTTCAGGAGCTCTCTTGCCCTGTTGACCGTGCCACGGT
GGTCTACTGCGATAACGTCTCGGCGGTCTACCTCTCCGCTAACCTGGTGCATCATCGATGGACCAAGCATATTGAGTTGG
ATATTCATTTTGTTCGGGAACAGGTGGCACTTGGCCATATTCGTGTTTTGCACGTTCCTACTTCCCAACAATTTGCCGAT
ATCATGACCAAGGGCTTGCCTACGGCGTCATTTGAGGAGTTCCGGTCCAGTCTTTGCGTCAGCCGCGGTGCCGCTTCGAC
TGCGGGGGGTGTTGAGTATATGTGTTATGTGCATATTGTGTATTGGGCCCGCCTCCTAGTTCCTTGTATAGTTGAGGTCT
GTGGCCCACCTTTGTACATCATATATACGTGCCTATGCACGAAGAGCAATACATCGTGCAATTCACACAT----------
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>chr6D_763
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------------------------------------------------------------------------------TT
AGTGCACAAAACAGCTAAGTCAACGATTTGCTGAGTTCACCAAGCGATCCTTTCATCAATCCGCAAGAAAGGAACAATGT
GGTGGAGACTAAGAGAGTGTACGGCTTTAC-----TACGAGCTAGCAGTATAAAACTAGTAAAGCTATTGCTACTCAATA
CACAACCGGGCCCTGTATTACACTACAGCACCGCGCCTACACGCAACGATTTACGATTAGCCTAGCGACTC--GGCATGG
CTACTGTCTTCCCCCGTGACGCCGGCGTCTCCACGCCGGAAGCCGACGAGGCTAAGAAAATCTACGATGAAGCACGGCGA
GTGGTGTCCACCTACGAGACTGTTCCCAGTCCCAGCGGAACCCTGCAGGATTACTGCCGCCACCCCAGCGGCTGGTGCAT
AACCCTGCCGATCATGGTGAGCTCCATGGTCGCAGAGCAGCACTTTGAGGCGCGTGGCACCGACGTGCTCCTTGTTACGA
TGCCCAAGTCCGGGACTACCTGGATCAAGGCCCTCCTCTATGCTGCGGCCCACCGCACTGACGACACATCATCGTCCATA
CTCCGGCAGCTCGCCTCCCACAACTCCCACCAGCTCGT-----TCCTTTCCTCGAGGCCCAGGTCTACACCAAGGACCAG
ATTCCAGACCTGAGCTCGCTTCCCGCGCCACGGCTCTTCGCCACGCACATCCCGGCTGAGTCGCTGCCACCCTCCGTTGT
GGCGTCCGGCTGCAAGGTACGTACGTTTTCTACGAGTGAAGCGCACTATAGTCCCTAAATTACTTCATTCAAGGGTGTCG
TGTAAGTCCTCAAACTATGAAAATTGACATTCAAATTCTTGAAATGTAATAAGTGTGTCTCTGAATTGT-----------
-----------------------------------------------------ATTTCGGGGATTTGGATGGCGATT-TT
CATAGTCCAAGGTCTAACGTGACACCCAGAAACAATTCAGGGACCTGAGCAGAAAACAACATTAATGTCTTGCGACAATT
ACATAGTAGCATCATGCA------------TGCAGGTGGTGTACTTGTGCCGGGACCCCAAGGACTGCTTCGTGTCTCTC
TGGCACTTTATGAACAAGTTCACCCCATGGGACATCGACGAGGCACACGGCCGGTTCTGCGAGGGTGTCTCGTTGTATGG
GCCATTTTGGGAGCACGTGCTGAGCTACTGGCGTTGGCACGTCGACCGACCGGGTCAGGTGCTCTTCCTGACTTACGAGG
AGCTCAGCGCCGACCCGCTCGGCCAACTGAGGCGCCTAGCCGAGTTCATTGGGCGCCCCTTCACGCCGGGGGAGCAGGAG
GCGGGAGTGGACAGGGAGATTGCGGAGGCATGTGCCATGAAAAGCATGGTCAACCAGGAGGTGAACCAGTCCAGGACGAC
CGAAATCGTTGAGATGCCGATTCCCAACGGGATCTTCTTCCGGCGAGGCGTGGTCGGAGACTGGACCAACTACCTCACGC
CGGAGATGGCAGGAAGGATCGATGAGATTACCAAGAGCAAGTTTGAAGGATCCGGCCTCATGCTGCCGAAAACAATCTCG
GAAATCTCAAAGATCTAGCATCCCTCC---GTCGTGT-TTGATGTTTGAAATCGTTCACC----TTTTTTTTCTCTTGTT
GTAAACTGCACCCTGCTGGCACTGGCTTGGCTGAATAAAAAAAGCTTGCATTGTTCTTGTTGATCAAACGAAATACCAGC
TGGCGAGTTGTTGATGTTACGGAAAAGGCCTGCTTAGTCTTAGGTATTTTTCTTATCGGTTTAATTGTGATCAAATGTGT
TTGTACTCTGCTTAATTATTAATAAAAATGATTGTATGCATCACAATAATACAGAGGCCAAGGGACTCAACTTCATTTTC
CAAAACAAGAGAATACTAACCTGCTCCGAATGATCTTCTACATGATTAAGCACGATGGCGCCACAAGTCAAAGGACGCCA
AGATCAAGCTGTATAGTATTTTCCAGTTCAACAAAATAAGCGAATCAAAAGTTTCAACTGGTATGAGCATTGTGTTCATC
GTGAAATAAAAAAGTAAAAAAACAACACGGCGTCATATCTC---------------------------------------
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>chr6B_1003
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------------------------------------------------------------------------------GG
CTAATCTCTTCCCACGTCACGCCGGCGTCCCCGCGCCGGACGCCGACGAGGCAAAAGAAATCTATGACGAAGCTCGGAGA
GTGGTGTCCACCTACGAGACCGTTCCCAG------CGGAATCGTGGTTGATTACCACCGCCACCCCGACGGGTGGCATAT
GGCCCTGCCGGTGATGGTGAGCTCCATGGTCGCACATCACCACTTCGAGGCCCGCGGGACCGATGTGCTCCTTGTTACCA
TCCCCAAGTCCGGGACCACCTGGATCAAGGCTCTTCTCTACGCCGCCGCCCGCCGCACCGATGACGCATCGTTCG---TA
CTCCGGCAGCTCGCCTCCCACAACTCGCACCAGCTCGTTCCTTTCCTTTCCTCGAGACCCAGGTGTACACCAAGGACCAG
ATCCCCGACCTGAGCTCGCTTCCGGCGCCACGGCTCTTCGCCACGCACGTCCCGGCGGAGTCGCTGCCAGCTTCCGTTGT
GGCGTCGGGTTGCAAGGTAGTAGGACTATGTTTGC---------------------------------------------
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--------------------------------------TACCATGGTTACAACATTATTACTAGTGGTTTATTGCAACAG
TTTTTCTTTTTCTTTTTCTTTTTGAGAACG-----------------------------------TTTCTTGCAACAATT
ACAAATAGTAGTACTATATTATGTGTGGTGTGCAGGTGGTGTACTTGTGCCGGGACCCCAAGGACTGTTTCGTGTCTCTC
TGGCACTTTATGAACAAGCTGACCCCATGGGACATTGACGAGGCACACGGCCGGTTCTGCGACGGCGTCTCGGTCTATGG
GCCGTTCTGGGAGCATGTGCTAAGCTACTGGCGGTGGCACGTCGAGAGGCCGGGTCAGGTGCTCTTCCTTACTTACGAGG
AGCTCAGCGCCGACCCGCTTGGCCAGCTGAGGCGCCTTGCCGAGTTCATCGGGCGCCCGTTCACGCCGGGAGAGCAGGAG
GCCGGAATAGACAGGGAGATCGCGGAGGCATGCGCCATGAAGAGCATGGTCAGTCGGGAGGTGAACCAGTCGGGGACGAC
CGAAATGACGGAGATGCCGATGCCCAACGGGATCTTTTTCCGACGCGGCGTGGTCGGAGACTGGACCAACTACCTAACAC
CGGAAATGGCAACACGGATTGATGAGATTACCAAGAGCAAGTTCGAAGGATCCGGCCTGATGCTGCCCGAAACGAACTCG
AAAATCACAAAGATCTAGCATTCCTACATTGTTGCAT-TTGATGTTTTAAATCGTTCGCCATAATTTGGTCCCTCTTGTT
GTAAACTGCAGACTGATGTCGCTGGCTTGCCTGAATAAAAAAA-------------------------------------
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>chr6B_1678
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-----------------------------------------------------------AAGATTTGGATGCCTGTCATT
CAAAGTTTGAGGGCTGGCGTCACACCTCTAGACAATTTAGGGATCTAAGCACGCAACAACATTAATGGCTTGCAACAATT
---------CATCATGCA------------TGCAGGTGGTGTATTTGTGTCGGGACCCCAAGGACTGCTTTGTGTCTCTC
TGGCACTTTGTGAGAAAGTTCACCCCACGTGACATAGACGAGGCACACGACTAGTTCTGCAATGGTGTCTCATTGTATGG
GCCATTCTGGGAGCACGTGCTGAGCTACTGGCGGTGGCACGTTGAGAGACCGGGATAGGTGCTCTTCCTGACTTACGAGG
AGCTCAGCGCTGACCCTCTCGGCCAGCTGAGGCGCCTTGCCGAGTTCATCGAGCGCCCCTTCACGCCAAGGGAGCATGAG
GCCAGAGTGGACAGGGAGATTGCGGAGGCATGTGCCATGAAGAGCATGCTCAACCAGGAGGTGAACCAGTCGGGGATGAC
CGAAATCGCTGAGATGCAAATTCCCAACGGGATCTTCTTCAGGTGCGGTGTGGTTGGAGGTTGGACCAACTACCTCATGC
CAGAGATGGCGGGAAGGATTGATGAGATTACCAAGAGCAAGTTCGAAGGATCCGGCCTCAGGCTGCCCAAAACAATCTCA
AAAATCCCAA-GATCTAGCATTCCTAC---GTCGCAT-TTGATGTTTGAAATTGTTTACCTTAATTTTCTTGCTCTTGTT
GTAAACTGCACCCTGCTGTCACTACCTTGGCTGAATAAAAAAATCTTGCATTGTTCTTGTTGATC-AACGGAATACCAGT
TGGCAAGAAGT---TGTTACGGAAGAGGCCTACTTAGTATTAGGTGTT--------------------------------
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>SNPs
------S---------S-------------------------------------------------------S-------
----------S--------S---------S-----------------------------------S--------------
---------------------------S----------------S-------S---------------------------
--S------------------------------------------S-------------S--------------SS-SSS
-SSSS--SS-------------------------------------------S---------------------------
--------------S-----S-------S-----S-------S------------S-------SS---------------
-----S--------------------------------------------------------------------------
--S------------------------------------------------S------S--S-----------S---S-S
----S-------------------------S-S------------------------S-----SSS----SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
S----------------------------S-----S----------------S-S------------------S------
--S--------------------SS-----SSSSS--------------------S------------------------
---------------S---------------------------------S------S--------------SS-------
----------------------S--------------------------------------------S------------
---------------------------------------S------S------------------S--------------
--S-S---------------------------------------------------------------------------
---------SS-----------------S---------------------------------------------------
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-----------S-----------S------------------S-------------------S-----------------
---------------------------------------SSS-SS--SS-S-SSS----------------S--S----S
-----------S-S-S--S----S----------S----S-------S-SS-SSS----SSSSSS--S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-S----S-------S----------------S----
------------S-----S-------------------------------------S--------S--------------
-------------S------------------------------------------------------------------
-------------------------------------------------------------------S-----------S
----------------------------------------S---------------------------------------
------SS---S----------------------------S---------------------------------------
---------------S-----S----------------------------------------------------S-----
------S------------------------S---S--------------------------------------------
--------------------------------------------------S-----------------------------
-----------------S--------S---------SS------------------------------------------
------------------S--S---S------------------------S-------------S---------------
-------------S--------------------------------------S---S-------------------S-S-
------------------------------------------S-------S-----S------SSS------S-------
S-------------S------S----S------S------------------S--------------S------------
---S----S------------------------------------------------S--S--------S----------
-----S------SS-----S--S-S----S-S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_319
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-----------------------------------------------------------TCCTGTTGACCGTGCATCTC-
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>reverse_2247
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------AATTGAGATGCCGATGCCCA------------------------------------------------------
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>forward_2000
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------------------------------------------------------------AACGGCGCCTCATTGTATGA
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>reverse_2966
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-----TGAGGGGCATGTTAAGGAGC-------------------------------------------------------
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