Multiple sequence alignment - TraesCS6A01G226200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G226200 chr6A 100.000 2390 0 0 1 2390 425863018 425860629 0.000000e+00 4414
1 TraesCS6A01G226200 chr6D 92.400 1842 59 26 583 2389 295143510 295145305 0.000000e+00 2551
2 TraesCS6A01G226200 chr6D 92.265 362 22 3 233 594 37679116 37679471 2.120000e-140 508
3 TraesCS6A01G226200 chr6D 81.186 388 54 10 1083 1465 295068549 295068922 6.460000e-76 294
4 TraesCS6A01G226200 chr6D 79.737 380 52 11 1091 1465 295110331 295110690 3.940000e-63 252
5 TraesCS6A01G226200 chr6D 94.521 73 1 3 170 241 295143455 295143525 2.510000e-20 110
6 TraesCS6A01G226200 chr6B 91.985 1335 46 20 589 1898 459382971 459384269 0.000000e+00 1816
7 TraesCS6A01G226200 chr6B 80.263 380 50 11 1091 1465 459229004 459229363 1.820000e-66 263
8 TraesCS6A01G226200 chr6B 80.178 338 45 10 1135 1465 459265386 459265708 1.430000e-57 233
9 TraesCS6A01G226200 chr6B 94.737 133 5 1 2253 2385 459387164 459387294 3.110000e-49 206
10 TraesCS6A01G226200 chr6B 92.143 140 9 2 46 184 585795730 585795592 1.870000e-46 196
11 TraesCS6A01G226200 chr6B 86.905 168 14 2 2003 2168 459384693 459384854 5.250000e-42 182
12 TraesCS6A01G226200 chr5A 95.442 351 15 1 240 589 592710884 592711234 2.080000e-155 558
13 TraesCS6A01G226200 chr4D 95.442 351 15 1 240 589 24774829 24774479 2.080000e-155 558
14 TraesCS6A01G226200 chr4D 94.872 351 17 1 240 589 442759368 442759718 4.490000e-152 547
15 TraesCS6A01G226200 chr4D 91.979 374 27 3 234 605 347289650 347290022 2.720000e-144 521
16 TraesCS6A01G226200 chr3A 95.170 352 16 1 239 589 669947774 669948125 2.680000e-154 555
17 TraesCS6A01G226200 chr3A 90.451 377 28 5 239 614 125852024 125852393 7.680000e-135 490
18 TraesCS6A01G226200 chr3A 90.289 381 28 6 236 614 125885367 125885740 7.680000e-135 490
19 TraesCS6A01G226200 chr3A 95.349 129 5 1 50 177 16815360 16815488 1.120000e-48 204
20 TraesCS6A01G226200 chr3D 95.157 351 16 1 240 589 283239080 283239430 9.650000e-154 553
21 TraesCS6A01G226200 chr3D 93.351 376 17 8 229 600 1011242 1011613 1.250000e-152 549
22 TraesCS6A01G226200 chr2D 95.157 351 16 1 240 589 534852149 534851799 9.650000e-154 553
23 TraesCS6A01G226200 chr2D 90.323 155 10 4 25 177 20689708 20689859 5.210000e-47 198
24 TraesCS6A01G226200 chr1D 94.663 356 17 2 240 594 359693533 359693179 3.470000e-153 551
25 TraesCS6A01G226200 chr7D 94.886 352 17 1 239 589 46849757 46850108 1.250000e-152 549
26 TraesCS6A01G226200 chr1B 92.935 368 22 4 234 598 683238361 683238727 1.260000e-147 532
27 TraesCS6A01G226200 chr1B 92.701 137 8 2 50 185 482450617 482450482 1.870000e-46 196
28 TraesCS6A01G226200 chr5D 92.896 366 25 1 234 598 61653814 61653449 4.520000e-147 531
29 TraesCS6A01G226200 chr5D 92.086 139 8 3 40 176 179777531 179777668 2.420000e-45 193
30 TraesCS6A01G226200 chr2B 92.308 364 25 3 240 601 642615382 642615020 4.560000e-142 514
31 TraesCS6A01G226200 chr7B 91.008 367 30 3 236 600 562369103 562369468 2.130000e-135 492
32 TraesCS6A01G226200 chr7B 95.312 128 6 0 48 175 680658408 680658535 1.120000e-48 204
33 TraesCS6A01G226200 chr7B 92.086 139 9 2 45 182 679795432 679795295 6.740000e-46 195
34 TraesCS6A01G226200 chr5B 94.656 131 6 1 50 179 11550471 11550341 4.030000e-48 202
35 TraesCS6A01G226200 chr3B 92.199 141 9 2 46 185 592606365 592606504 5.210000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G226200 chr6A 425860629 425863018 2389 True 4414.000000 4414 100.0000 1 2390 1 chr6A.!!$R1 2389
1 TraesCS6A01G226200 chr6D 295143455 295145305 1850 False 1330.500000 2551 93.4605 170 2389 2 chr6D.!!$F4 2219
2 TraesCS6A01G226200 chr6B 459382971 459387294 4323 False 734.666667 1816 91.2090 589 2385 3 chr6B.!!$F3 1796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.038744 TTCCGGACGAAGGGAGTACT 59.961 55.0 1.83 0.0 33.01 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1496 0.036952 ACGCTACATGTGCTGAGCTT 60.037 50.0 9.11 0.0 32.6 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.922740 TCGGTATACCATTGCCTTCC 57.077 50.000 21.76 0.00 35.14 3.46
20 21 2.404559 TCGGTATACCATTGCCTTCCT 58.595 47.619 21.76 0.00 35.14 3.36
21 22 3.578978 TCGGTATACCATTGCCTTCCTA 58.421 45.455 21.76 0.00 35.14 2.94
22 23 3.968649 TCGGTATACCATTGCCTTCCTAA 59.031 43.478 21.76 0.00 35.14 2.69
23 24 4.062991 CGGTATACCATTGCCTTCCTAAC 58.937 47.826 21.76 0.00 35.14 2.34
24 25 4.202326 CGGTATACCATTGCCTTCCTAACT 60.202 45.833 21.76 0.00 35.14 2.24
25 26 5.011329 CGGTATACCATTGCCTTCCTAACTA 59.989 44.000 21.76 0.00 35.14 2.24
26 27 6.295688 CGGTATACCATTGCCTTCCTAACTAT 60.296 42.308 21.76 0.00 35.14 2.12
27 28 7.104290 GGTATACCATTGCCTTCCTAACTATC 58.896 42.308 17.44 0.00 35.64 2.08
28 29 4.439253 ACCATTGCCTTCCTAACTATCC 57.561 45.455 0.00 0.00 0.00 2.59
29 30 3.785887 ACCATTGCCTTCCTAACTATCCA 59.214 43.478 0.00 0.00 0.00 3.41
30 31 4.137543 CCATTGCCTTCCTAACTATCCAC 58.862 47.826 0.00 0.00 0.00 4.02
31 32 3.926058 TTGCCTTCCTAACTATCCACC 57.074 47.619 0.00 0.00 0.00 4.61
32 33 2.124411 TGCCTTCCTAACTATCCACCC 58.876 52.381 0.00 0.00 0.00 4.61
33 34 1.420514 GCCTTCCTAACTATCCACCCC 59.579 57.143 0.00 0.00 0.00 4.95
34 35 1.692519 CCTTCCTAACTATCCACCCCG 59.307 57.143 0.00 0.00 0.00 5.73
35 36 2.395619 CTTCCTAACTATCCACCCCGT 58.604 52.381 0.00 0.00 0.00 5.28
36 37 1.784358 TCCTAACTATCCACCCCGTG 58.216 55.000 0.00 0.00 0.00 4.94
37 38 1.007479 TCCTAACTATCCACCCCGTGT 59.993 52.381 0.00 0.00 0.00 4.49
38 39 1.835531 CCTAACTATCCACCCCGTGTT 59.164 52.381 0.00 0.00 0.00 3.32
39 40 2.159000 CCTAACTATCCACCCCGTGTTC 60.159 54.545 0.00 0.00 0.00 3.18
40 41 1.354101 AACTATCCACCCCGTGTTCA 58.646 50.000 0.00 0.00 0.00 3.18
41 42 1.580059 ACTATCCACCCCGTGTTCAT 58.420 50.000 0.00 0.00 0.00 2.57
42 43 1.913419 ACTATCCACCCCGTGTTCATT 59.087 47.619 0.00 0.00 0.00 2.57
43 44 3.109151 ACTATCCACCCCGTGTTCATTA 58.891 45.455 0.00 0.00 0.00 1.90
44 45 2.710096 ATCCACCCCGTGTTCATTAG 57.290 50.000 0.00 0.00 0.00 1.73
45 46 0.616371 TCCACCCCGTGTTCATTAGG 59.384 55.000 0.00 0.00 0.00 2.69
46 47 0.616371 CCACCCCGTGTTCATTAGGA 59.384 55.000 0.00 0.00 0.00 2.94
47 48 1.406887 CCACCCCGTGTTCATTAGGAG 60.407 57.143 0.00 0.00 0.00 3.69
48 49 1.278127 CACCCCGTGTTCATTAGGAGT 59.722 52.381 0.00 0.00 0.00 3.85
49 50 1.982958 ACCCCGTGTTCATTAGGAGTT 59.017 47.619 0.00 0.00 0.00 3.01
50 51 3.055675 CACCCCGTGTTCATTAGGAGTTA 60.056 47.826 0.00 0.00 0.00 2.24
51 52 3.055602 ACCCCGTGTTCATTAGGAGTTAC 60.056 47.826 0.00 0.00 0.00 2.50
52 53 3.197116 CCCCGTGTTCATTAGGAGTTACT 59.803 47.826 0.00 0.00 0.00 2.24
53 54 4.430908 CCCGTGTTCATTAGGAGTTACTC 58.569 47.826 3.36 3.36 0.00 2.59
63 64 2.274920 GGAGTTACTCCTTCCGTTCG 57.725 55.000 23.05 0.00 46.41 3.95
64 65 1.135170 GGAGTTACTCCTTCCGTTCGG 60.135 57.143 23.05 4.74 46.41 4.30
65 66 1.815003 GAGTTACTCCTTCCGTTCGGA 59.185 52.381 10.00 10.00 0.00 4.55
66 67 2.229784 GAGTTACTCCTTCCGTTCGGAA 59.770 50.000 22.42 22.42 41.48 4.30
67 68 2.629617 AGTTACTCCTTCCGTTCGGAAA 59.370 45.455 23.59 11.87 42.88 3.13
68 69 3.260128 AGTTACTCCTTCCGTTCGGAAAT 59.740 43.478 23.59 13.73 42.88 2.17
69 70 4.463891 AGTTACTCCTTCCGTTCGGAAATA 59.536 41.667 23.59 14.95 42.88 1.40
70 71 3.242549 ACTCCTTCCGTTCGGAAATAC 57.757 47.619 23.59 0.00 42.88 1.89
71 72 2.830321 ACTCCTTCCGTTCGGAAATACT 59.170 45.455 23.59 7.76 42.88 2.12
72 73 3.260128 ACTCCTTCCGTTCGGAAATACTT 59.740 43.478 23.59 8.09 42.88 2.24
73 74 3.592059 TCCTTCCGTTCGGAAATACTTG 58.408 45.455 23.59 12.93 42.88 3.16
74 75 3.007182 TCCTTCCGTTCGGAAATACTTGT 59.993 43.478 23.59 0.00 42.88 3.16
75 76 3.370061 CCTTCCGTTCGGAAATACTTGTC 59.630 47.826 23.59 0.00 42.88 3.18
76 77 3.663995 TCCGTTCGGAAATACTTGTCA 57.336 42.857 11.66 0.00 0.00 3.58
77 78 4.196626 TCCGTTCGGAAATACTTGTCAT 57.803 40.909 11.66 0.00 0.00 3.06
78 79 4.178540 TCCGTTCGGAAATACTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
79 80 3.930229 CCGTTCGGAAATACTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
80 81 4.390603 CCGTTCGGAAATACTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
81 82 5.106869 CCGTTCGGAAATACTTGTCATCAAA 60.107 40.000 5.19 0.00 32.87 2.69
82 83 6.367421 CGTTCGGAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
83 84 7.021196 CGTTCGGAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
84 85 8.172484 CGTTCGGAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
85 86 9.490663 GTTCGGAAATACTTGTCATCAAAATAG 57.509 33.333 0.00 0.00 32.87 1.73
86 87 9.443323 TTCGGAAATACTTGTCATCAAAATAGA 57.557 29.630 0.00 0.00 32.87 1.98
87 88 8.879759 TCGGAAATACTTGTCATCAAAATAGAC 58.120 33.333 0.00 0.00 32.87 2.59
88 89 8.664798 CGGAAATACTTGTCATCAAAATAGACA 58.335 33.333 0.00 0.00 40.24 3.41
154 155 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
161 162 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
162 163 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
163 164 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
164 165 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
165 166 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
166 167 3.193903 TGATGACAAGTATTTCCGGACGA 59.806 43.478 1.83 0.00 0.00 4.20
167 168 3.663995 TGACAAGTATTTCCGGACGAA 57.336 42.857 1.83 0.00 0.00 3.85
168 169 3.581755 TGACAAGTATTTCCGGACGAAG 58.418 45.455 1.83 0.00 0.00 3.79
169 170 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
170 171 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
171 172 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
172 173 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
173 174 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
174 175 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
175 176 0.890683 TTTCCGGACGAAGGGAGTAC 59.109 55.000 1.83 0.00 33.01 2.73
176 177 0.038744 TTCCGGACGAAGGGAGTACT 59.961 55.000 1.83 0.00 33.01 2.73
177 178 0.038744 TCCGGACGAAGGGAGTACTT 59.961 55.000 0.00 0.00 0.00 2.24
247 248 6.732896 AAGATTATGTGTACCTAGTCCTGG 57.267 41.667 0.00 0.00 0.00 4.45
248 249 4.589374 AGATTATGTGTACCTAGTCCTGGC 59.411 45.833 0.00 0.00 0.00 4.85
249 250 1.497161 ATGTGTACCTAGTCCTGGCC 58.503 55.000 0.00 0.00 0.00 5.36
250 251 0.115547 TGTGTACCTAGTCCTGGCCA 59.884 55.000 4.71 4.71 0.00 5.36
251 252 1.273609 TGTGTACCTAGTCCTGGCCAT 60.274 52.381 5.51 0.00 0.00 4.40
252 253 1.413077 GTGTACCTAGTCCTGGCCATC 59.587 57.143 5.51 0.00 0.00 3.51
253 254 1.291033 TGTACCTAGTCCTGGCCATCT 59.709 52.381 5.51 8.22 0.00 2.90
254 255 1.964933 GTACCTAGTCCTGGCCATCTC 59.035 57.143 5.51 0.00 0.00 2.75
255 256 0.339859 ACCTAGTCCTGGCCATCTCA 59.660 55.000 5.51 0.00 0.00 3.27
256 257 1.047002 CCTAGTCCTGGCCATCTCAG 58.953 60.000 5.51 0.00 0.00 3.35
297 298 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
298 299 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
299 300 1.380650 GCCCGGCCCTAAAATCCAA 60.381 57.895 0.00 0.00 0.00 3.53
300 301 1.391933 GCCCGGCCCTAAAATCCAAG 61.392 60.000 0.00 0.00 0.00 3.61
301 302 0.755327 CCCGGCCCTAAAATCCAAGG 60.755 60.000 0.00 0.00 0.00 3.61
302 303 1.391933 CCGGCCCTAAAATCCAAGGC 61.392 60.000 0.00 0.00 43.09 4.35
304 305 3.615597 GCCCTAAAATCCAAGGCCT 57.384 52.632 0.00 0.00 37.66 5.19
305 306 2.748209 GCCCTAAAATCCAAGGCCTA 57.252 50.000 5.16 0.00 37.66 3.93
306 307 2.587522 GCCCTAAAATCCAAGGCCTAG 58.412 52.381 5.16 0.00 37.66 3.02
307 308 2.753168 GCCCTAAAATCCAAGGCCTAGG 60.753 54.545 5.16 6.28 37.66 3.02
308 309 2.587522 CCTAAAATCCAAGGCCTAGGC 58.412 52.381 26.55 26.55 41.06 3.93
325 326 4.096003 CCCGATGGGCTTGTCCGT 62.096 66.667 0.00 0.00 35.35 4.69
326 327 2.819595 CCGATGGGCTTGTCCGTG 60.820 66.667 0.00 0.00 34.94 4.94
327 328 2.819595 CGATGGGCTTGTCCGTGG 60.820 66.667 0.00 0.00 34.94 4.94
328 329 2.438434 GATGGGCTTGTCCGTGGG 60.438 66.667 0.00 0.00 34.94 4.61
329 330 4.740822 ATGGGCTTGTCCGTGGGC 62.741 66.667 0.00 0.00 34.94 5.36
346 347 3.966543 CCGGGTTTGGGCCTGAGT 61.967 66.667 4.53 0.00 37.06 3.41
347 348 2.115266 CGGGTTTGGGCCTGAGTT 59.885 61.111 4.53 0.00 37.06 3.01
348 349 1.530655 CGGGTTTGGGCCTGAGTTT 60.531 57.895 4.53 0.00 37.06 2.66
349 350 1.112916 CGGGTTTGGGCCTGAGTTTT 61.113 55.000 4.53 0.00 37.06 2.43
350 351 0.392706 GGGTTTGGGCCTGAGTTTTG 59.607 55.000 4.53 0.00 0.00 2.44
351 352 1.408969 GGTTTGGGCCTGAGTTTTGA 58.591 50.000 4.53 0.00 0.00 2.69
352 353 1.341209 GGTTTGGGCCTGAGTTTTGAG 59.659 52.381 4.53 0.00 0.00 3.02
353 354 1.039856 TTTGGGCCTGAGTTTTGAGC 58.960 50.000 4.53 0.00 0.00 4.26
354 355 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
355 356 1.228552 GGGCCTGAGTTTTGAGCCA 60.229 57.895 0.84 0.00 45.72 4.75
356 357 0.827507 GGGCCTGAGTTTTGAGCCAA 60.828 55.000 0.84 0.00 45.72 4.52
357 358 1.260544 GGCCTGAGTTTTGAGCCAAT 58.739 50.000 0.00 0.00 43.32 3.16
358 359 1.203287 GGCCTGAGTTTTGAGCCAATC 59.797 52.381 0.00 0.00 43.32 2.67
359 360 1.888512 GCCTGAGTTTTGAGCCAATCA 59.111 47.619 0.00 0.00 35.62 2.57
360 361 2.094854 GCCTGAGTTTTGAGCCAATCAG 60.095 50.000 8.73 8.73 39.68 2.90
361 362 2.094854 CCTGAGTTTTGAGCCAATCAGC 60.095 50.000 9.64 0.00 39.68 4.26
362 363 2.555325 CTGAGTTTTGAGCCAATCAGCA 59.445 45.455 0.00 0.00 39.68 4.41
363 364 2.555325 TGAGTTTTGAGCCAATCAGCAG 59.445 45.455 0.00 0.00 39.68 4.24
364 365 2.816087 GAGTTTTGAGCCAATCAGCAGA 59.184 45.455 0.00 0.00 39.68 4.26
365 366 2.818432 AGTTTTGAGCCAATCAGCAGAG 59.182 45.455 0.00 0.00 39.68 3.35
366 367 1.171308 TTTGAGCCAATCAGCAGAGC 58.829 50.000 0.00 0.00 39.68 4.09
367 368 0.679002 TTGAGCCAATCAGCAGAGCC 60.679 55.000 0.00 0.00 39.68 4.70
368 369 1.224039 GAGCCAATCAGCAGAGCCT 59.776 57.895 0.00 0.00 34.23 4.58
369 370 1.077644 AGCCAATCAGCAGAGCCTG 60.078 57.895 0.00 0.00 34.23 4.85
370 371 2.119655 GCCAATCAGCAGAGCCTGG 61.120 63.158 4.65 0.00 33.64 4.45
371 372 1.605992 CCAATCAGCAGAGCCTGGA 59.394 57.895 0.00 0.00 33.64 3.86
372 373 0.747283 CCAATCAGCAGAGCCTGGAC 60.747 60.000 0.00 0.00 33.64 4.02
373 374 1.088340 CAATCAGCAGAGCCTGGACG 61.088 60.000 0.00 0.00 33.64 4.79
374 375 2.249413 AATCAGCAGAGCCTGGACGG 62.249 60.000 0.00 0.00 33.64 4.79
375 376 4.463879 CAGCAGAGCCTGGACGGG 62.464 72.222 0.00 0.00 31.21 5.28
383 384 3.710722 CCTGGACGGGCTTGAGCT 61.711 66.667 2.66 0.00 41.70 4.09
384 385 2.348998 CTGGACGGGCTTGAGCTT 59.651 61.111 2.66 0.00 41.70 3.74
385 386 2.032528 TGGACGGGCTTGAGCTTG 59.967 61.111 2.66 0.00 41.70 4.01
386 387 2.747855 GGACGGGCTTGAGCTTGG 60.748 66.667 2.66 0.00 41.70 3.61
387 388 3.435186 GACGGGCTTGAGCTTGGC 61.435 66.667 2.66 0.00 41.70 4.52
388 389 4.269523 ACGGGCTTGAGCTTGGCA 62.270 61.111 2.66 0.00 41.70 4.92
389 390 2.753043 CGGGCTTGAGCTTGGCAT 60.753 61.111 2.66 0.00 41.70 4.40
390 391 1.451927 CGGGCTTGAGCTTGGCATA 60.452 57.895 2.66 0.00 41.70 3.14
391 392 0.820891 CGGGCTTGAGCTTGGCATAT 60.821 55.000 2.66 0.00 41.70 1.78
392 393 1.406903 GGGCTTGAGCTTGGCATATT 58.593 50.000 2.66 0.00 41.70 1.28
393 394 1.068127 GGGCTTGAGCTTGGCATATTG 59.932 52.381 2.66 0.00 41.70 1.90
394 395 1.068127 GGCTTGAGCTTGGCATATTGG 59.932 52.381 2.66 0.00 41.70 3.16
395 396 1.537562 GCTTGAGCTTGGCATATTGGC 60.538 52.381 0.00 0.00 39.75 4.52
408 409 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
409 410 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
410 411 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
411 412 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
412 413 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
413 414 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
414 415 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
415 416 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
416 417 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
450 451 2.828661 CCTAAGGGCTTTTTAGGGCT 57.171 50.000 12.28 0.00 42.20 5.19
451 452 3.101643 CCTAAGGGCTTTTTAGGGCTT 57.898 47.619 12.28 0.00 42.20 4.35
452 453 3.441101 CCTAAGGGCTTTTTAGGGCTTT 58.559 45.455 12.28 0.00 42.20 3.51
453 454 3.838317 CCTAAGGGCTTTTTAGGGCTTTT 59.162 43.478 12.28 0.00 42.20 2.27
454 455 4.286032 CCTAAGGGCTTTTTAGGGCTTTTT 59.714 41.667 12.28 0.00 42.20 1.94
455 456 5.482526 CCTAAGGGCTTTTTAGGGCTTTTTA 59.517 40.000 12.28 0.00 42.20 1.52
456 457 4.884668 AGGGCTTTTTAGGGCTTTTTAC 57.115 40.909 0.00 0.00 0.00 2.01
457 458 3.257375 AGGGCTTTTTAGGGCTTTTTACG 59.743 43.478 0.00 0.00 0.00 3.18
458 459 3.256383 GGGCTTTTTAGGGCTTTTTACGA 59.744 43.478 0.00 0.00 0.00 3.43
459 460 4.482386 GGCTTTTTAGGGCTTTTTACGAG 58.518 43.478 0.00 0.00 0.00 4.18
460 461 4.216902 GGCTTTTTAGGGCTTTTTACGAGA 59.783 41.667 0.00 0.00 0.00 4.04
461 462 5.105877 GGCTTTTTAGGGCTTTTTACGAGAT 60.106 40.000 0.00 0.00 0.00 2.75
462 463 5.800438 GCTTTTTAGGGCTTTTTACGAGATG 59.200 40.000 0.00 0.00 0.00 2.90
463 464 5.890424 TTTTAGGGCTTTTTACGAGATGG 57.110 39.130 0.00 0.00 0.00 3.51
464 465 2.420058 AGGGCTTTTTACGAGATGGG 57.580 50.000 0.00 0.00 0.00 4.00
465 466 0.738975 GGGCTTTTTACGAGATGGGC 59.261 55.000 0.00 0.00 0.00 5.36
466 467 0.738975 GGCTTTTTACGAGATGGGCC 59.261 55.000 0.00 0.00 0.00 5.80
467 468 0.377203 GCTTTTTACGAGATGGGCCG 59.623 55.000 0.00 0.00 0.00 6.13
468 469 1.014352 CTTTTTACGAGATGGGCCGG 58.986 55.000 0.00 0.00 0.00 6.13
469 470 0.393267 TTTTTACGAGATGGGCCGGG 60.393 55.000 2.18 0.00 0.00 5.73
470 471 2.879813 TTTTACGAGATGGGCCGGGC 62.880 60.000 22.00 22.00 0.00 6.13
471 472 4.853142 TACGAGATGGGCCGGGCT 62.853 66.667 28.80 9.11 0.00 5.19
474 475 4.883354 GAGATGGGCCGGGCTTGG 62.883 72.222 28.80 0.00 0.00 3.61
482 483 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
483 484 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
494 495 3.249687 CTTGAAAAGTAGGCCCGCT 57.750 52.632 0.00 0.00 39.70 5.52
495 496 0.804989 CTTGAAAAGTAGGCCCGCTG 59.195 55.000 0.00 0.00 39.70 5.18
496 497 0.608035 TTGAAAAGTAGGCCCGCTGG 60.608 55.000 0.00 0.00 0.00 4.85
497 498 1.002502 GAAAAGTAGGCCCGCTGGT 60.003 57.895 0.00 0.00 0.00 4.00
498 499 0.251073 GAAAAGTAGGCCCGCTGGTA 59.749 55.000 0.00 0.00 0.00 3.25
499 500 0.252197 AAAAGTAGGCCCGCTGGTAG 59.748 55.000 0.00 0.00 0.00 3.18
500 501 1.623542 AAAGTAGGCCCGCTGGTAGG 61.624 60.000 0.00 0.00 0.00 3.18
509 510 3.483869 GCTGGTAGGGCCTGGGAG 61.484 72.222 18.53 9.69 38.35 4.30
510 511 2.770048 CTGGTAGGGCCTGGGAGG 60.770 72.222 18.53 0.00 38.80 4.30
511 512 4.431524 TGGTAGGGCCTGGGAGGG 62.432 72.222 18.53 0.00 35.37 4.30
529 530 2.909140 GCCTAGGCCTCAGTCTTCT 58.091 57.895 24.19 0.00 34.56 2.85
530 531 0.463620 GCCTAGGCCTCAGTCTTCTG 59.536 60.000 24.19 0.00 37.83 3.02
531 532 0.463620 CCTAGGCCTCAGTCTTCTGC 59.536 60.000 9.68 0.00 41.10 4.26
532 533 0.463620 CTAGGCCTCAGTCTTCTGCC 59.536 60.000 9.68 0.00 41.10 4.85
533 534 0.252239 TAGGCCTCAGTCTTCTGCCA 60.252 55.000 9.68 0.00 41.10 4.92
534 535 0.913451 AGGCCTCAGTCTTCTGCCAT 60.913 55.000 0.00 0.00 41.10 4.40
535 536 0.747283 GGCCTCAGTCTTCTGCCATG 60.747 60.000 0.00 0.00 41.10 3.66
536 537 0.747283 GCCTCAGTCTTCTGCCATGG 60.747 60.000 7.63 7.63 41.10 3.66
537 538 0.107312 CCTCAGTCTTCTGCCATGGG 60.107 60.000 15.13 0.00 41.10 4.00
603 604 7.336176 TGGCTAGATATATGTGTACCTAAGACG 59.664 40.741 0.00 0.00 0.00 4.18
619 620 1.004918 ACGCGGTTCCAAGGAGAAG 60.005 57.895 12.47 0.00 0.00 2.85
630 631 2.223923 CCAAGGAGAAGCTGATACGGAG 60.224 54.545 0.00 0.00 0.00 4.63
672 673 2.728435 ATAGGCCGGACGTGTTCCC 61.728 63.158 5.05 0.00 42.27 3.97
784 796 4.684703 ACTGATTCGTGAAGAAGTAAACCG 59.315 41.667 0.00 0.00 42.92 4.44
871 883 2.071844 ATCCATCGTCCGCTACACCG 62.072 60.000 0.00 0.00 0.00 4.94
1009 1021 3.551796 CTTCGATCGATGAAGCGGA 57.448 52.632 22.68 3.57 36.72 5.54
1010 1022 1.840181 CTTCGATCGATGAAGCGGAA 58.160 50.000 22.68 2.85 36.72 4.30
1395 1407 0.246635 ACGCTGTTGCTTAGGATCGT 59.753 50.000 0.00 0.00 36.97 3.73
1398 1410 2.346803 GCTGTTGCTTAGGATCGTCAA 58.653 47.619 0.00 0.00 36.03 3.18
1428 1440 4.307908 GCGTCCAGTTTGCGCGTT 62.308 61.111 8.43 0.00 41.70 4.84
1476 1489 2.143876 ATTGGTAGGCATCCAACACC 57.856 50.000 13.89 0.00 45.84 4.16
1477 1490 0.774276 TTGGTAGGCATCCAACACCA 59.226 50.000 8.87 0.00 39.62 4.17
1478 1491 0.774276 TGGTAGGCATCCAACACCAA 59.226 50.000 0.00 0.00 36.36 3.67
1479 1492 1.271871 TGGTAGGCATCCAACACCAAG 60.272 52.381 0.00 0.00 36.36 3.61
1480 1493 1.004277 GGTAGGCATCCAACACCAAGA 59.996 52.381 0.00 0.00 0.00 3.02
1481 1494 2.554344 GGTAGGCATCCAACACCAAGAA 60.554 50.000 0.00 0.00 0.00 2.52
1482 1495 1.915141 AGGCATCCAACACCAAGAAG 58.085 50.000 0.00 0.00 0.00 2.85
1483 1496 1.425066 AGGCATCCAACACCAAGAAGA 59.575 47.619 0.00 0.00 0.00 2.87
1484 1497 2.158475 AGGCATCCAACACCAAGAAGAA 60.158 45.455 0.00 0.00 0.00 2.52
1485 1498 2.229784 GGCATCCAACACCAAGAAGAAG 59.770 50.000 0.00 0.00 0.00 2.85
1486 1499 2.352127 GCATCCAACACCAAGAAGAAGC 60.352 50.000 0.00 0.00 0.00 3.86
1487 1500 3.152341 CATCCAACACCAAGAAGAAGCT 58.848 45.455 0.00 0.00 0.00 3.74
1488 1501 2.851195 TCCAACACCAAGAAGAAGCTC 58.149 47.619 0.00 0.00 0.00 4.09
1489 1502 2.172505 TCCAACACCAAGAAGAAGCTCA 59.827 45.455 0.00 0.00 0.00 4.26
1490 1503 2.551459 CCAACACCAAGAAGAAGCTCAG 59.449 50.000 0.00 0.00 0.00 3.35
1566 1579 3.873805 GATCCATCATCGACGCAGA 57.126 52.632 0.00 0.00 0.00 4.26
1567 1580 2.360553 GATCCATCATCGACGCAGAT 57.639 50.000 0.00 0.00 0.00 2.90
1568 1581 2.681706 GATCCATCATCGACGCAGATT 58.318 47.619 0.00 0.00 0.00 2.40
1569 1582 2.140065 TCCATCATCGACGCAGATTC 57.860 50.000 0.00 0.00 0.00 2.52
1570 1583 1.683385 TCCATCATCGACGCAGATTCT 59.317 47.619 0.00 0.00 0.00 2.40
1571 1584 2.884639 TCCATCATCGACGCAGATTCTA 59.115 45.455 0.00 0.00 0.00 2.10
1573 1586 3.856521 CCATCATCGACGCAGATTCTATC 59.143 47.826 0.00 0.00 0.00 2.08
1628 1653 4.801330 TGTGTACATGACGAGAATTCCT 57.199 40.909 0.00 0.00 0.00 3.36
1640 1665 4.222114 CGAGAATTCCTTGTTGTTGCTTC 58.778 43.478 0.65 0.00 0.00 3.86
1717 1746 4.521146 GAATTGACAGACACCCATGATCT 58.479 43.478 0.00 0.00 0.00 2.75
1736 1765 4.966965 TCTAGAGAAAGCTTAGGACGTG 57.033 45.455 0.00 0.00 0.00 4.49
1741 1770 1.927838 GAAAGCTTAGGACGTGCTAGC 59.072 52.381 21.88 21.88 35.85 3.42
1809 1838 6.821388 AGTCAAATCTCGCCAGATATTACTT 58.179 36.000 0.00 0.00 38.55 2.24
1875 1905 7.539712 TGAGAATTGAGATTGTTCGATTACC 57.460 36.000 0.00 0.00 32.55 2.85
1901 1934 3.010420 GCTTCACCTTGGAATACTGGTC 58.990 50.000 0.00 0.00 0.00 4.02
1943 1976 5.698089 GTCCTCGATCATTCTATCAATTGCA 59.302 40.000 0.00 0.00 0.00 4.08
1977 2067 0.533755 GCTCCCCGGATGACAATCTG 60.534 60.000 0.73 0.00 38.71 2.90
1993 2084 6.595326 TGACAATCTGATACATTTGGTGACTC 59.405 38.462 0.00 0.00 0.00 3.36
1994 2085 6.475504 ACAATCTGATACATTTGGTGACTCA 58.524 36.000 0.00 0.00 0.00 3.41
2032 2411 6.515035 GCTCAAATTTGGGGTTATATCCTTCG 60.515 42.308 19.53 0.00 0.00 3.79
2065 2447 2.259618 GCGCTTGAGAACTCACGAATA 58.740 47.619 15.41 0.00 39.66 1.75
2117 2499 1.509923 GCCTGAACCTGATTGCAGC 59.490 57.895 0.00 0.00 40.91 5.25
2123 2505 2.302733 TGAACCTGATTGCAGCTCACTA 59.697 45.455 0.00 0.00 40.91 2.74
2190 2572 2.494059 TGCTTTGTCAGGCTTGTAGAC 58.506 47.619 0.00 0.00 0.00 2.59
2191 2573 1.807142 GCTTTGTCAGGCTTGTAGACC 59.193 52.381 0.00 0.00 0.00 3.85
2192 2574 2.069273 CTTTGTCAGGCTTGTAGACCG 58.931 52.381 0.00 0.00 0.00 4.79
2193 2575 0.320374 TTGTCAGGCTTGTAGACCGG 59.680 55.000 0.00 0.00 0.00 5.28
2194 2576 0.541063 TGTCAGGCTTGTAGACCGGA 60.541 55.000 9.46 0.00 0.00 5.14
2195 2577 0.108756 GTCAGGCTTGTAGACCGGAC 60.109 60.000 9.46 0.10 42.52 4.79
2196 2578 0.251653 TCAGGCTTGTAGACCGGACT 60.252 55.000 9.46 10.97 0.00 3.85
2197 2579 1.005097 TCAGGCTTGTAGACCGGACTA 59.995 52.381 9.46 9.60 0.00 2.59
2198 2580 2.032620 CAGGCTTGTAGACCGGACTAT 58.967 52.381 16.61 0.00 0.00 2.12
2199 2581 2.034812 CAGGCTTGTAGACCGGACTATC 59.965 54.545 16.61 10.79 0.00 2.08
2200 2582 2.091775 AGGCTTGTAGACCGGACTATCT 60.092 50.000 16.61 7.23 0.00 1.98
2201 2583 2.034812 GGCTTGTAGACCGGACTATCTG 59.965 54.545 16.61 10.35 0.00 2.90
2211 2593 1.762957 CGGACTATCTGGTCAACCCAT 59.237 52.381 0.00 0.00 44.15 4.00
2241 3653 7.657761 AGATACACATTCCATATCCGAAAGTTC 59.342 37.037 0.00 0.00 0.00 3.01
2248 3660 8.499162 CATTCCATATCCGAAAGTTCTATTGTC 58.501 37.037 0.00 0.00 0.00 3.18
2312 4950 3.887621 TCGTCCCCTACATTCTGAAAG 57.112 47.619 0.00 0.00 0.00 2.62
2378 5016 3.816994 AGGTTTCACCCACTAACTTCAC 58.183 45.455 0.00 0.00 39.75 3.18
2389 5027 5.530915 CCCACTAACTTCACAAGACAAATCA 59.469 40.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.404559 AGGAAGGCAATGGTATACCGA 58.595 47.619 17.13 6.94 39.43 4.69
1 2 2.930826 AGGAAGGCAATGGTATACCG 57.069 50.000 17.13 4.24 39.43 4.02
2 3 5.306114 AGTTAGGAAGGCAATGGTATACC 57.694 43.478 15.50 15.50 0.00 2.73
5 6 5.610982 TGGATAGTTAGGAAGGCAATGGTAT 59.389 40.000 0.00 0.00 0.00 2.73
6 7 4.972568 TGGATAGTTAGGAAGGCAATGGTA 59.027 41.667 0.00 0.00 0.00 3.25
7 8 3.785887 TGGATAGTTAGGAAGGCAATGGT 59.214 43.478 0.00 0.00 0.00 3.55
8 9 4.137543 GTGGATAGTTAGGAAGGCAATGG 58.862 47.826 0.00 0.00 0.00 3.16
9 10 4.137543 GGTGGATAGTTAGGAAGGCAATG 58.862 47.826 0.00 0.00 0.00 2.82
10 11 3.138468 GGGTGGATAGTTAGGAAGGCAAT 59.862 47.826 0.00 0.00 0.00 3.56
11 12 2.508300 GGGTGGATAGTTAGGAAGGCAA 59.492 50.000 0.00 0.00 0.00 4.52
12 13 2.124411 GGGTGGATAGTTAGGAAGGCA 58.876 52.381 0.00 0.00 0.00 4.75
13 14 1.420514 GGGGTGGATAGTTAGGAAGGC 59.579 57.143 0.00 0.00 0.00 4.35
14 15 1.692519 CGGGGTGGATAGTTAGGAAGG 59.307 57.143 0.00 0.00 0.00 3.46
15 16 2.102588 CACGGGGTGGATAGTTAGGAAG 59.897 54.545 0.00 0.00 0.00 3.46
16 17 2.112998 CACGGGGTGGATAGTTAGGAA 58.887 52.381 0.00 0.00 0.00 3.36
17 18 1.007479 ACACGGGGTGGATAGTTAGGA 59.993 52.381 0.42 0.00 37.94 2.94
18 19 1.492764 ACACGGGGTGGATAGTTAGG 58.507 55.000 0.42 0.00 37.94 2.69
19 20 2.498481 TGAACACGGGGTGGATAGTTAG 59.502 50.000 0.42 0.00 37.94 2.34
20 21 2.538222 TGAACACGGGGTGGATAGTTA 58.462 47.619 0.42 0.00 37.94 2.24
21 22 1.354101 TGAACACGGGGTGGATAGTT 58.646 50.000 0.42 0.00 37.94 2.24
22 23 1.580059 ATGAACACGGGGTGGATAGT 58.420 50.000 0.42 0.00 37.94 2.12
23 24 2.710096 AATGAACACGGGGTGGATAG 57.290 50.000 0.42 0.00 37.94 2.08
24 25 2.436542 CCTAATGAACACGGGGTGGATA 59.563 50.000 0.42 0.00 37.94 2.59
25 26 1.211949 CCTAATGAACACGGGGTGGAT 59.788 52.381 0.42 0.00 37.94 3.41
26 27 0.616371 CCTAATGAACACGGGGTGGA 59.384 55.000 0.42 0.00 37.94 4.02
27 28 0.616371 TCCTAATGAACACGGGGTGG 59.384 55.000 0.42 0.00 37.94 4.61
28 29 1.278127 ACTCCTAATGAACACGGGGTG 59.722 52.381 0.00 0.00 39.75 4.61
29 30 1.652947 ACTCCTAATGAACACGGGGT 58.347 50.000 0.00 0.00 0.00 4.95
30 31 2.781681 AACTCCTAATGAACACGGGG 57.218 50.000 0.00 0.00 0.00 5.73
31 32 4.430908 GAGTAACTCCTAATGAACACGGG 58.569 47.826 0.00 0.00 0.00 5.28
32 33 4.430908 GGAGTAACTCCTAATGAACACGG 58.569 47.826 0.00 0.00 46.41 4.94
44 45 1.135170 CCGAACGGAAGGAGTAACTCC 60.135 57.143 7.53 0.00 43.63 3.85
45 46 1.815003 TCCGAACGGAAGGAGTAACTC 59.185 52.381 13.65 0.00 42.05 3.01
46 47 1.915141 TCCGAACGGAAGGAGTAACT 58.085 50.000 13.65 0.00 42.05 2.24
55 56 8.643390 TTTGATGACAAGTATTTCCGAACGGAA 61.643 37.037 22.11 22.11 43.18 4.30
56 57 3.663995 TGACAAGTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
57 58 3.930229 TGATGACAAGTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
58 59 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
59 60 9.490663 CTATTTTGATGACAAGTATTTCCGAAC 57.509 33.333 0.00 0.00 37.32 3.95
60 61 9.443323 TCTATTTTGATGACAAGTATTTCCGAA 57.557 29.630 0.00 0.00 37.32 4.30
61 62 8.879759 GTCTATTTTGATGACAAGTATTTCCGA 58.120 33.333 0.00 0.00 37.32 4.55
62 63 8.664798 TGTCTATTTTGATGACAAGTATTTCCG 58.335 33.333 0.00 0.00 37.71 4.30
128 129 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
136 137 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
137 138 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
138 139 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
139 140 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
140 141 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
141 142 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
142 143 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
143 144 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
144 145 3.193903 TCGTCCGGAAATACTTGTCATCA 59.806 43.478 5.23 0.00 0.00 3.07
145 146 3.777478 TCGTCCGGAAATACTTGTCATC 58.223 45.455 5.23 0.00 0.00 2.92
146 147 3.880047 TCGTCCGGAAATACTTGTCAT 57.120 42.857 5.23 0.00 0.00 3.06
147 148 3.581755 CTTCGTCCGGAAATACTTGTCA 58.418 45.455 5.23 0.00 33.34 3.58
148 149 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
149 150 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
150 151 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
151 152 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
152 153 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
153 154 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
154 155 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
155 156 1.479730 GTACTCCCTTCGTCCGGAAAT 59.520 52.381 5.23 0.00 33.34 2.17
156 157 0.890683 GTACTCCCTTCGTCCGGAAA 59.109 55.000 5.23 0.00 33.34 3.13
157 158 0.038744 AGTACTCCCTTCGTCCGGAA 59.961 55.000 5.23 0.00 0.00 4.30
158 159 0.038744 AAGTACTCCCTTCGTCCGGA 59.961 55.000 0.00 0.00 0.00 5.14
159 160 0.893447 AAAGTACTCCCTTCGTCCGG 59.107 55.000 0.00 0.00 0.00 5.14
160 161 2.738013 AAAAGTACTCCCTTCGTCCG 57.262 50.000 0.00 0.00 0.00 4.79
184 185 3.929610 CACAAGTAACTCCTAGCAAGCTC 59.070 47.826 0.00 0.00 0.00 4.09
186 187 3.665190 ACACAAGTAACTCCTAGCAAGC 58.335 45.455 0.00 0.00 0.00 4.01
232 233 1.413077 GATGGCCAGGACTAGGTACAC 59.587 57.143 13.05 0.00 0.00 2.90
233 234 1.291033 AGATGGCCAGGACTAGGTACA 59.709 52.381 13.05 0.00 0.00 2.90
234 235 1.964933 GAGATGGCCAGGACTAGGTAC 59.035 57.143 13.05 0.00 0.00 3.34
235 236 1.573857 TGAGATGGCCAGGACTAGGTA 59.426 52.381 13.05 0.00 0.00 3.08
236 237 0.339859 TGAGATGGCCAGGACTAGGT 59.660 55.000 13.05 0.00 0.00 3.08
237 238 1.047002 CTGAGATGGCCAGGACTAGG 58.953 60.000 13.05 3.55 0.00 3.02
281 282 1.380650 TTGGATTTTAGGGCCGGGC 60.381 57.895 22.00 22.00 0.00 6.13
282 283 0.755327 CCTTGGATTTTAGGGCCGGG 60.755 60.000 2.18 0.00 0.00 5.73
283 284 1.391933 GCCTTGGATTTTAGGGCCGG 61.392 60.000 0.00 0.00 37.12 6.13
284 285 2.115510 GCCTTGGATTTTAGGGCCG 58.884 57.895 0.00 0.00 37.12 6.13
287 288 2.753168 GCCTAGGCCTTGGATTTTAGGG 60.753 54.545 34.13 7.14 34.56 3.53
288 289 2.587522 GCCTAGGCCTTGGATTTTAGG 58.412 52.381 34.13 21.74 34.56 2.69
309 310 2.819595 CACGGACAAGCCCATCGG 60.820 66.667 0.00 0.00 0.00 4.18
310 311 2.819595 CCACGGACAAGCCCATCG 60.820 66.667 0.00 0.00 0.00 3.84
311 312 2.438434 CCCACGGACAAGCCCATC 60.438 66.667 0.00 0.00 0.00 3.51
312 313 4.740822 GCCCACGGACAAGCCCAT 62.741 66.667 0.00 0.00 0.00 4.00
329 330 2.994643 AAACTCAGGCCCAAACCCGG 62.995 60.000 0.00 0.00 0.00 5.73
330 331 1.112916 AAAACTCAGGCCCAAACCCG 61.113 55.000 0.00 0.00 0.00 5.28
331 332 0.392706 CAAAACTCAGGCCCAAACCC 59.607 55.000 0.00 0.00 0.00 4.11
332 333 1.341209 CTCAAAACTCAGGCCCAAACC 59.659 52.381 0.00 0.00 0.00 3.27
333 334 1.269778 GCTCAAAACTCAGGCCCAAAC 60.270 52.381 0.00 0.00 0.00 2.93
334 335 1.039856 GCTCAAAACTCAGGCCCAAA 58.960 50.000 0.00 0.00 0.00 3.28
335 336 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
336 337 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
337 338 0.827507 TTGGCTCAAAACTCAGGCCC 60.828 55.000 0.00 0.00 41.84 5.80
338 339 1.203287 GATTGGCTCAAAACTCAGGCC 59.797 52.381 0.00 0.00 42.73 5.19
339 340 1.888512 TGATTGGCTCAAAACTCAGGC 59.111 47.619 0.00 0.00 35.76 4.85
340 341 2.094854 GCTGATTGGCTCAAAACTCAGG 60.095 50.000 13.90 3.15 32.14 3.86
341 342 2.555325 TGCTGATTGGCTCAAAACTCAG 59.445 45.455 10.33 10.33 32.14 3.35
342 343 2.555325 CTGCTGATTGGCTCAAAACTCA 59.445 45.455 0.00 0.00 32.14 3.41
343 344 2.816087 TCTGCTGATTGGCTCAAAACTC 59.184 45.455 0.00 0.00 32.14 3.01
344 345 2.818432 CTCTGCTGATTGGCTCAAAACT 59.182 45.455 0.00 0.00 32.14 2.66
345 346 2.670509 GCTCTGCTGATTGGCTCAAAAC 60.671 50.000 0.00 0.00 32.14 2.43
346 347 1.542915 GCTCTGCTGATTGGCTCAAAA 59.457 47.619 0.00 0.00 32.14 2.44
347 348 1.171308 GCTCTGCTGATTGGCTCAAA 58.829 50.000 0.00 0.00 32.14 2.69
348 349 0.679002 GGCTCTGCTGATTGGCTCAA 60.679 55.000 0.00 0.00 32.14 3.02
349 350 1.077930 GGCTCTGCTGATTGGCTCA 60.078 57.895 0.00 0.00 0.00 4.26
350 351 1.096386 CAGGCTCTGCTGATTGGCTC 61.096 60.000 6.05 0.00 32.97 4.70
351 352 1.077644 CAGGCTCTGCTGATTGGCT 60.078 57.895 3.62 3.62 35.69 4.75
352 353 2.119655 CCAGGCTCTGCTGATTGGC 61.120 63.158 0.00 0.00 0.00 4.52
353 354 0.747283 GTCCAGGCTCTGCTGATTGG 60.747 60.000 10.70 10.70 0.00 3.16
354 355 1.088340 CGTCCAGGCTCTGCTGATTG 61.088 60.000 0.00 0.00 0.00 2.67
355 356 1.220206 CGTCCAGGCTCTGCTGATT 59.780 57.895 0.00 0.00 0.00 2.57
356 357 2.729479 CCGTCCAGGCTCTGCTGAT 61.729 63.158 0.00 0.00 0.00 2.90
357 358 3.385384 CCGTCCAGGCTCTGCTGA 61.385 66.667 0.00 0.00 0.00 4.26
358 359 4.463879 CCCGTCCAGGCTCTGCTG 62.464 72.222 0.00 0.00 39.21 4.41
366 367 3.259633 AAGCTCAAGCCCGTCCAGG 62.260 63.158 0.00 0.00 43.38 4.45
367 368 2.037136 CAAGCTCAAGCCCGTCCAG 61.037 63.158 0.00 0.00 43.38 3.86
368 369 2.032528 CAAGCTCAAGCCCGTCCA 59.967 61.111 0.00 0.00 43.38 4.02
369 370 2.747855 CCAAGCTCAAGCCCGTCC 60.748 66.667 0.00 0.00 43.38 4.79
370 371 3.435186 GCCAAGCTCAAGCCCGTC 61.435 66.667 0.00 0.00 43.38 4.79
371 372 2.196997 TATGCCAAGCTCAAGCCCGT 62.197 55.000 0.00 0.00 43.38 5.28
372 373 0.820891 ATATGCCAAGCTCAAGCCCG 60.821 55.000 0.00 0.00 43.38 6.13
373 374 1.068127 CAATATGCCAAGCTCAAGCCC 59.932 52.381 0.00 0.00 43.38 5.19
374 375 1.068127 CCAATATGCCAAGCTCAAGCC 59.932 52.381 0.00 0.00 43.38 4.35
375 376 1.537562 GCCAATATGCCAAGCTCAAGC 60.538 52.381 0.00 0.00 42.49 4.01
376 377 1.752498 TGCCAATATGCCAAGCTCAAG 59.248 47.619 0.00 0.00 0.00 3.02
377 378 1.849977 TGCCAATATGCCAAGCTCAA 58.150 45.000 0.00 0.00 0.00 3.02
378 379 2.076207 ATGCCAATATGCCAAGCTCA 57.924 45.000 0.00 0.00 0.00 4.26
379 380 3.464111 AAATGCCAATATGCCAAGCTC 57.536 42.857 0.00 0.00 0.00 4.09
380 381 3.918294 AAAATGCCAATATGCCAAGCT 57.082 38.095 0.00 0.00 0.00 3.74
381 382 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
382 383 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
383 384 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
384 385 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
385 386 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
386 387 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
387 388 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
388 389 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
389 390 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
390 391 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
391 392 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
392 393 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
393 394 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
394 395 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
395 396 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
396 397 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
397 398 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
398 399 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
399 400 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
400 401 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
431 432 2.828661 AGCCCTAAAAAGCCCTTAGG 57.171 50.000 8.49 8.49 43.49 2.69
432 433 5.483685 AAAAAGCCCTAAAAAGCCCTTAG 57.516 39.130 0.00 0.00 0.00 2.18
433 434 5.047872 CGTAAAAAGCCCTAAAAAGCCCTTA 60.048 40.000 0.00 0.00 0.00 2.69
434 435 4.262292 CGTAAAAAGCCCTAAAAAGCCCTT 60.262 41.667 0.00 0.00 0.00 3.95
435 436 3.257375 CGTAAAAAGCCCTAAAAAGCCCT 59.743 43.478 0.00 0.00 0.00 5.19
436 437 3.256383 TCGTAAAAAGCCCTAAAAAGCCC 59.744 43.478 0.00 0.00 0.00 5.19
437 438 4.216902 TCTCGTAAAAAGCCCTAAAAAGCC 59.783 41.667 0.00 0.00 0.00 4.35
438 439 5.366829 TCTCGTAAAAAGCCCTAAAAAGC 57.633 39.130 0.00 0.00 0.00 3.51
439 440 6.322491 CCATCTCGTAAAAAGCCCTAAAAAG 58.678 40.000 0.00 0.00 0.00 2.27
440 441 5.184287 CCCATCTCGTAAAAAGCCCTAAAAA 59.816 40.000 0.00 0.00 0.00 1.94
441 442 4.703093 CCCATCTCGTAAAAAGCCCTAAAA 59.297 41.667 0.00 0.00 0.00 1.52
442 443 4.266714 CCCATCTCGTAAAAAGCCCTAAA 58.733 43.478 0.00 0.00 0.00 1.85
443 444 3.881220 CCCATCTCGTAAAAAGCCCTAA 58.119 45.455 0.00 0.00 0.00 2.69
444 445 2.420967 GCCCATCTCGTAAAAAGCCCTA 60.421 50.000 0.00 0.00 0.00 3.53
445 446 1.682087 GCCCATCTCGTAAAAAGCCCT 60.682 52.381 0.00 0.00 0.00 5.19
446 447 0.738975 GCCCATCTCGTAAAAAGCCC 59.261 55.000 0.00 0.00 0.00 5.19
447 448 0.738975 GGCCCATCTCGTAAAAAGCC 59.261 55.000 0.00 0.00 0.00 4.35
448 449 0.377203 CGGCCCATCTCGTAAAAAGC 59.623 55.000 0.00 0.00 0.00 3.51
449 450 1.014352 CCGGCCCATCTCGTAAAAAG 58.986 55.000 0.00 0.00 0.00 2.27
450 451 0.393267 CCCGGCCCATCTCGTAAAAA 60.393 55.000 0.00 0.00 0.00 1.94
451 452 1.222387 CCCGGCCCATCTCGTAAAA 59.778 57.895 0.00 0.00 0.00 1.52
452 453 2.904905 CCCGGCCCATCTCGTAAA 59.095 61.111 0.00 0.00 0.00 2.01
453 454 3.857038 GCCCGGCCCATCTCGTAA 61.857 66.667 0.00 0.00 0.00 3.18
454 455 4.853142 AGCCCGGCCCATCTCGTA 62.853 66.667 5.55 0.00 0.00 3.43
457 458 4.883354 CCAAGCCCGGCCCATCTC 62.883 72.222 5.55 0.00 0.00 2.75
465 466 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
466 467 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
467 468 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
468 469 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
469 470 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
470 471 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
471 472 1.627864 GGCCTACTTTTCAAGCCCAA 58.372 50.000 0.00 0.00 37.66 4.12
472 473 3.356814 GGCCTACTTTTCAAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
474 475 1.934220 GCGGGCCTACTTTTCAAGCC 61.934 60.000 0.84 0.00 43.09 4.35
475 476 0.960861 AGCGGGCCTACTTTTCAAGC 60.961 55.000 0.84 0.00 0.00 4.01
476 477 0.804989 CAGCGGGCCTACTTTTCAAG 59.195 55.000 0.84 0.00 0.00 3.02
477 478 0.608035 CCAGCGGGCCTACTTTTCAA 60.608 55.000 0.84 0.00 0.00 2.69
478 479 1.002624 CCAGCGGGCCTACTTTTCA 60.003 57.895 0.84 0.00 0.00 2.69
479 480 0.251073 TACCAGCGGGCCTACTTTTC 59.749 55.000 0.84 0.00 37.90 2.29
480 481 0.252197 CTACCAGCGGGCCTACTTTT 59.748 55.000 0.84 0.00 37.90 2.27
481 482 1.623542 CCTACCAGCGGGCCTACTTT 61.624 60.000 0.84 0.00 37.90 2.66
482 483 2.064581 CCTACCAGCGGGCCTACTT 61.065 63.158 0.84 0.00 37.90 2.24
483 484 2.444140 CCTACCAGCGGGCCTACT 60.444 66.667 0.84 0.00 37.90 2.57
484 485 3.547513 CCCTACCAGCGGGCCTAC 61.548 72.222 0.84 0.00 37.90 3.18
492 493 3.483869 CTCCCAGGCCCTACCAGC 61.484 72.222 0.00 0.00 43.14 4.85
493 494 2.770048 CCTCCCAGGCCCTACCAG 60.770 72.222 0.00 0.00 43.14 4.00
494 495 4.431524 CCCTCCCAGGCCCTACCA 62.432 72.222 0.00 0.00 43.14 3.25
511 512 0.463620 CAGAAGACTGAGGCCTAGGC 59.536 60.000 26.55 26.55 46.03 3.93
512 513 0.463620 GCAGAAGACTGAGGCCTAGG 59.536 60.000 4.42 3.67 46.03 3.02
513 514 0.463620 GGCAGAAGACTGAGGCCTAG 59.536 60.000 4.42 6.46 46.03 3.02
514 515 0.252239 TGGCAGAAGACTGAGGCCTA 60.252 55.000 4.42 0.00 46.03 3.93
515 516 0.913451 ATGGCAGAAGACTGAGGCCT 60.913 55.000 3.86 3.86 46.03 5.19
516 517 0.747283 CATGGCAGAAGACTGAGGCC 60.747 60.000 0.00 0.00 46.03 5.19
517 518 0.747283 CCATGGCAGAAGACTGAGGC 60.747 60.000 0.00 0.00 46.03 4.70
518 519 0.107312 CCCATGGCAGAAGACTGAGG 60.107 60.000 6.09 0.00 46.03 3.86
519 520 3.473147 CCCATGGCAGAAGACTGAG 57.527 57.895 6.09 0.00 46.03 3.35
540 541 2.526628 TTGGGCCGGGCCTAAAAA 59.473 55.556 42.77 28.32 45.79 1.94
573 574 5.663106 AGGTACACATATATCTAGCCATGGG 59.337 44.000 15.13 0.00 0.00 4.00
574 575 6.798427 AGGTACACATATATCTAGCCATGG 57.202 41.667 7.63 7.63 0.00 3.66
575 576 9.190317 TCTTAGGTACACATATATCTAGCCATG 57.810 37.037 0.00 0.00 0.00 3.66
576 577 9.191479 GTCTTAGGTACACATATATCTAGCCAT 57.809 37.037 0.00 0.00 0.00 4.40
577 578 7.336176 CGTCTTAGGTACACATATATCTAGCCA 59.664 40.741 0.00 0.00 0.00 4.75
578 579 7.679164 GCGTCTTAGGTACACATATATCTAGCC 60.679 44.444 0.00 0.00 0.00 3.93
579 580 7.188157 GCGTCTTAGGTACACATATATCTAGC 58.812 42.308 0.00 0.00 0.00 3.42
580 581 7.400301 CGCGTCTTAGGTACACATATATCTAG 58.600 42.308 0.00 0.00 0.00 2.43
581 582 6.314648 CCGCGTCTTAGGTACACATATATCTA 59.685 42.308 4.92 0.00 0.00 1.98
582 583 5.123502 CCGCGTCTTAGGTACACATATATCT 59.876 44.000 4.92 0.00 0.00 1.98
583 584 5.106396 ACCGCGTCTTAGGTACACATATATC 60.106 44.000 4.92 0.00 39.30 1.63
584 585 4.763793 ACCGCGTCTTAGGTACACATATAT 59.236 41.667 4.92 0.00 39.30 0.86
585 586 4.136796 ACCGCGTCTTAGGTACACATATA 58.863 43.478 4.92 0.00 39.30 0.86
586 587 2.954318 ACCGCGTCTTAGGTACACATAT 59.046 45.455 4.92 0.00 39.30 1.78
587 588 2.368439 ACCGCGTCTTAGGTACACATA 58.632 47.619 4.92 0.00 39.30 2.29
603 604 1.003233 AGCTTCTCCTTGGAACCGC 60.003 57.895 0.00 0.00 0.00 5.68
619 620 0.523966 CCTCGATCCTCCGTATCAGC 59.476 60.000 0.00 0.00 0.00 4.26
630 631 1.407258 CTGTCTTCACTCCCTCGATCC 59.593 57.143 0.00 0.00 0.00 3.36
672 673 2.325082 CCGTTCTTGGCACCCTTCG 61.325 63.158 0.00 0.00 0.00 3.79
784 796 4.520846 CGGCATGGACGCGCTTTC 62.521 66.667 5.73 0.82 0.00 2.62
871 883 2.218603 TCTCTTCCGGTTTGAGTTTGC 58.781 47.619 0.00 0.00 0.00 3.68
1009 1021 2.946762 GCGCGCTTCTTCTTGGTT 59.053 55.556 26.67 0.00 0.00 3.67
1010 1022 3.414700 CGCGCGCTTCTTCTTGGT 61.415 61.111 30.48 0.00 0.00 3.67
1177 1189 3.016971 CAGGATCAGGGGGTGGCA 61.017 66.667 0.00 0.00 0.00 4.92
1179 1191 2.042762 TCCAGGATCAGGGGGTGG 59.957 66.667 0.00 0.00 0.00 4.61
1428 1440 3.835395 ACCACACCAAGAAACCAAGAAAA 59.165 39.130 0.00 0.00 0.00 2.29
1476 1489 2.812591 ACATGTGCTGAGCTTCTTCTTG 59.187 45.455 5.83 2.96 0.00 3.02
1477 1490 3.137446 ACATGTGCTGAGCTTCTTCTT 57.863 42.857 5.83 0.00 0.00 2.52
1478 1491 2.855209 ACATGTGCTGAGCTTCTTCT 57.145 45.000 5.83 0.00 0.00 2.85
1479 1492 2.351111 GCTACATGTGCTGAGCTTCTTC 59.649 50.000 9.11 0.00 32.04 2.87
1480 1493 2.354259 GCTACATGTGCTGAGCTTCTT 58.646 47.619 9.11 0.00 32.04 2.52
1481 1494 1.738365 CGCTACATGTGCTGAGCTTCT 60.738 52.381 9.11 0.00 32.60 2.85
1482 1495 0.649475 CGCTACATGTGCTGAGCTTC 59.351 55.000 9.11 0.00 32.60 3.86
1483 1496 0.036952 ACGCTACATGTGCTGAGCTT 60.037 50.000 9.11 0.00 32.60 3.74
1484 1497 0.817654 TACGCTACATGTGCTGAGCT 59.182 50.000 9.11 2.55 32.60 4.09
1485 1498 1.203928 CTACGCTACATGTGCTGAGC 58.796 55.000 9.11 8.50 0.00 4.26
1486 1499 2.568696 ACTACGCTACATGTGCTGAG 57.431 50.000 9.11 11.38 0.00 3.35
1487 1500 2.230266 TCAACTACGCTACATGTGCTGA 59.770 45.455 9.11 6.80 0.00 4.26
1488 1501 2.606108 TCAACTACGCTACATGTGCTG 58.394 47.619 9.11 9.02 0.00 4.41
1489 1502 3.448686 GATCAACTACGCTACATGTGCT 58.551 45.455 9.11 3.61 0.00 4.40
1490 1503 2.216488 CGATCAACTACGCTACATGTGC 59.784 50.000 9.11 9.29 0.00 4.57
1566 1579 5.011431 TCAGCGGATCAATCACAGATAGAAT 59.989 40.000 0.00 0.00 0.00 2.40
1567 1580 4.342092 TCAGCGGATCAATCACAGATAGAA 59.658 41.667 0.00 0.00 0.00 2.10
1568 1581 3.891366 TCAGCGGATCAATCACAGATAGA 59.109 43.478 0.00 0.00 0.00 1.98
1569 1582 4.248691 TCAGCGGATCAATCACAGATAG 57.751 45.455 0.00 0.00 0.00 2.08
1570 1583 4.879197 ATCAGCGGATCAATCACAGATA 57.121 40.909 0.00 0.00 0.00 1.98
1571 1584 3.766068 ATCAGCGGATCAATCACAGAT 57.234 42.857 0.00 0.00 0.00 2.90
1585 1610 7.121911 CACAATAAAATCTGTACAGATCAGCG 58.878 38.462 33.01 22.06 46.75 5.18
1628 1653 2.220824 CGTCGATCTGAAGCAACAACAA 59.779 45.455 0.00 0.00 0.00 2.83
1663 1688 7.710475 CCAGAACAATAAACCAAGAAAACACAT 59.290 33.333 0.00 0.00 0.00 3.21
1664 1689 7.038659 CCAGAACAATAAACCAAGAAAACACA 58.961 34.615 0.00 0.00 0.00 3.72
1665 1690 7.010091 CACCAGAACAATAAACCAAGAAAACAC 59.990 37.037 0.00 0.00 0.00 3.32
1717 1746 3.090037 AGCACGTCCTAAGCTTTCTCTA 58.910 45.455 3.20 0.00 34.37 2.43
1741 1770 2.159099 TGGCAATTAGACCAGCTAGACG 60.159 50.000 0.00 0.00 0.00 4.18
1809 1838 3.958147 TCAGACGGATAATAGCTTGACCA 59.042 43.478 0.00 0.00 0.00 4.02
1860 1890 4.589908 AGCCTTTGGTAATCGAACAATCT 58.410 39.130 0.00 0.00 0.00 2.40
1901 1934 0.456221 ACGTCGAGTCAGCCAATAGG 59.544 55.000 0.00 0.00 38.23 2.57
1943 1976 3.687264 CGGGGAGCAATTTGTATTAGGGT 60.687 47.826 0.00 0.00 0.00 4.34
2051 2433 6.037098 AGCATACAACTATTCGTGAGTTCTC 58.963 40.000 0.00 0.00 34.90 2.87
2065 2447 1.539827 GCCGTTTCCAAGCATACAACT 59.460 47.619 0.00 0.00 0.00 3.16
2117 2499 4.932200 GGACAAAATCAGGACACTAGTGAG 59.068 45.833 29.30 14.87 0.00 3.51
2123 2505 1.523758 GCGGACAAAATCAGGACACT 58.476 50.000 0.00 0.00 0.00 3.55
2190 2572 0.464452 GGGTTGACCAGATAGTCCGG 59.536 60.000 0.00 0.00 39.85 5.14
2191 2573 1.191535 TGGGTTGACCAGATAGTCCG 58.808 55.000 2.12 0.00 46.80 4.79
2201 2583 7.404671 AATGTGTATCTTAAATGGGTTGACC 57.595 36.000 0.00 0.00 40.81 4.02
2202 2584 7.122055 TGGAATGTGTATCTTAAATGGGTTGAC 59.878 37.037 0.00 0.00 0.00 3.18
2203 2585 7.178573 TGGAATGTGTATCTTAAATGGGTTGA 58.821 34.615 0.00 0.00 0.00 3.18
2204 2586 7.403312 TGGAATGTGTATCTTAAATGGGTTG 57.597 36.000 0.00 0.00 0.00 3.77
2205 2587 9.881773 ATATGGAATGTGTATCTTAAATGGGTT 57.118 29.630 0.00 0.00 0.00 4.11
2206 2588 9.520515 GATATGGAATGTGTATCTTAAATGGGT 57.479 33.333 0.00 0.00 0.00 4.51
2211 2593 9.839817 TTTCGGATATGGAATGTGTATCTTAAA 57.160 29.630 0.00 0.00 0.00 1.52
2241 3653 9.630098 ATGCAAACTTTATTGAGTTGACAATAG 57.370 29.630 0.00 0.00 41.59 1.73
2248 3660 6.449698 ACCTCATGCAAACTTTATTGAGTTG 58.550 36.000 8.44 0.00 39.68 3.16
2312 4950 7.148641 ACGATGACAATTAGACCATCTCATAC 58.851 38.462 0.00 0.00 34.75 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.