Multiple sequence alignment - TraesCS6A01G218400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G218400 chr6A 100.000 2767 0 0 1 2767 404359520 404362286 0.000000e+00 5110.0
1 TraesCS6A01G218400 chr6A 91.985 786 54 9 1 784 12221428 12222206 0.000000e+00 1094.0
2 TraesCS6A01G218400 chr6A 87.802 787 70 6 1 784 578439775 578439012 0.000000e+00 898.0
3 TraesCS6A01G218400 chr6A 87.166 787 74 7 1 784 488407414 488406652 0.000000e+00 869.0
4 TraesCS6A01G218400 chr6A 86.852 791 78 6 1 788 590113536 590112769 0.000000e+00 861.0
5 TraesCS6A01G218400 chr6A 100.000 68 0 0 2969 3036 404362488 404362555 3.180000e-25 126.0
6 TraesCS6A01G218400 chr6D 91.336 1535 69 28 893 2412 283805096 283806581 0.000000e+00 2039.0
7 TraesCS6A01G218400 chr6D 89.916 357 31 4 2414 2767 379197966 379198320 3.570000e-124 455.0
8 TraesCS6A01G218400 chr6D 89.831 354 34 2 2414 2767 268404781 268405132 1.280000e-123 453.0
9 TraesCS6A01G218400 chr6D 92.784 97 7 0 784 880 283804950 283805046 1.130000e-29 141.0
10 TraesCS6A01G218400 chr6D 95.588 68 3 0 2969 3036 71279781 71279848 3.200000e-20 110.0
11 TraesCS6A01G218400 chr6D 95.588 68 3 0 2969 3036 122172044 122172111 3.200000e-20 110.0
12 TraesCS6A01G218400 chr6D 95.588 68 3 0 2969 3036 266625175 266625242 3.200000e-20 110.0
13 TraesCS6A01G218400 chr6D 95.588 68 3 0 2969 3036 267178847 267178914 3.200000e-20 110.0
14 TraesCS6A01G218400 chr6D 95.652 46 2 0 784 829 155253552 155253597 1.170000e-09 75.0
15 TraesCS6A01G218400 chr6D 95.652 46 2 0 784 829 345760510 345760555 1.170000e-09 75.0
16 TraesCS6A01G218400 chr6D 91.304 46 4 0 784 829 200398766 200398721 2.530000e-06 63.9
17 TraesCS6A01G218400 chr6D 100.000 29 0 0 801 829 13765731 13765703 2.000000e-03 54.7
18 TraesCS6A01G218400 chr6B 86.983 1475 89 45 993 2412 444740216 444741642 0.000000e+00 1565.0
19 TraesCS6A01G218400 chr6B 95.652 46 2 0 784 829 141106446 141106491 1.170000e-09 75.0
20 TraesCS6A01G218400 chr7A 94.013 785 42 4 1 784 158194549 158195329 0.000000e+00 1184.0
21 TraesCS6A01G218400 chr7A 93.897 721 41 3 1 719 159733947 159734666 0.000000e+00 1085.0
22 TraesCS6A01G218400 chr7A 89.831 354 34 2 2414 2767 237849768 237850119 1.280000e-123 453.0
23 TraesCS6A01G218400 chr7A 93.478 46 3 0 784 829 230567574 230567529 5.430000e-08 69.4
24 TraesCS6A01G218400 chr5A 92.503 787 54 4 1 784 51904122 51904906 0.000000e+00 1122.0
25 TraesCS6A01G218400 chr5A 91.566 332 23 4 1 329 644818151 644818480 1.280000e-123 453.0
26 TraesCS6A01G218400 chr5A 83.898 354 30 13 1491 1844 21452828 21452502 2.270000e-81 313.0
27 TraesCS6A01G218400 chr4B 90.741 756 62 8 1 753 165027717 165028467 0.000000e+00 1002.0
28 TraesCS6A01G218400 chr4B 87.563 788 72 6 1 785 438355157 438354393 0.000000e+00 889.0
29 TraesCS6A01G218400 chr3A 89.655 783 73 5 1 780 677835254 677836031 0.000000e+00 990.0
30 TraesCS6A01G218400 chr1A 87.786 786 71 5 1 784 209394146 209393384 0.000000e+00 896.0
31 TraesCS6A01G218400 chr1A 86.826 797 77 13 1 793 6873565 6872793 0.000000e+00 865.0
32 TraesCS6A01G218400 chr1A 90.964 332 24 5 1 329 517180787 517181115 2.780000e-120 442.0
33 TraesCS6A01G218400 chr4A 87.675 787 71 6 1 784 647520184 647519421 0.000000e+00 893.0
34 TraesCS6A01G218400 chr1B 89.898 683 59 9 105 783 130721421 130720745 0.000000e+00 870.0
35 TraesCS6A01G218400 chr1B 89.547 574 55 4 105 676 131287995 131287425 0.000000e+00 723.0
36 TraesCS6A01G218400 chr5B 87.166 787 74 7 1 784 488523261 488522499 0.000000e+00 869.0
37 TraesCS6A01G218400 chr5B 82.203 354 36 14 1491 1844 24232863 24232537 2.300000e-71 279.0
38 TraesCS6A01G218400 chr5B 91.667 48 4 0 784 831 614366532 614366579 1.950000e-07 67.6
39 TraesCS6A01G218400 chr2D 90.423 355 31 2 2413 2767 383359503 383359152 5.930000e-127 464.0
40 TraesCS6A01G218400 chr2D 90.169 356 30 4 2414 2766 310254558 310254911 2.760000e-125 459.0
41 TraesCS6A01G218400 chr2D 93.478 46 3 0 784 829 112543853 112543898 5.430000e-08 69.4
42 TraesCS6A01G218400 chr2D 91.667 48 4 0 784 831 154158849 154158802 1.950000e-07 67.6
43 TraesCS6A01G218400 chr7D 90.196 357 30 3 2414 2767 290981407 290981053 7.670000e-126 460.0
44 TraesCS6A01G218400 chr7D 77.551 539 90 22 212 728 53257161 53256632 2.290000e-76 296.0
45 TraesCS6A01G218400 chr5D 90.113 354 33 2 2414 2767 343664730 343664379 2.760000e-125 459.0
46 TraesCS6A01G218400 chr5D 83.898 354 30 15 1491 1844 33074776 33074450 2.270000e-81 313.0
47 TraesCS6A01G218400 chr5D 93.478 46 3 0 784 829 482605552 482605507 5.430000e-08 69.4
48 TraesCS6A01G218400 chr5D 91.837 49 1 2 784 829 486826774 486826726 7.030000e-07 65.8
49 TraesCS6A01G218400 chr3D 90.113 354 33 2 2414 2767 272702130 272701779 2.760000e-125 459.0
50 TraesCS6A01G218400 chr3D 90.113 354 33 2 2414 2767 275842206 275842557 2.760000e-125 459.0
51 TraesCS6A01G218400 chr3D 95.652 46 2 0 784 829 68832849 68832894 1.170000e-09 75.0
52 TraesCS6A01G218400 chr3D 93.478 46 3 0 784 829 552288394 552288349 5.430000e-08 69.4
53 TraesCS6A01G218400 chrUn 95.588 68 3 0 2969 3036 122036403 122036336 3.200000e-20 110.0
54 TraesCS6A01G218400 chrUn 91.304 46 4 0 784 829 23574917 23574962 2.530000e-06 63.9
55 TraesCS6A01G218400 chr4D 95.588 68 3 0 2969 3036 253921142 253921209 3.200000e-20 110.0
56 TraesCS6A01G218400 chr4D 91.304 46 4 0 784 829 13094775 13094820 2.530000e-06 63.9
57 TraesCS6A01G218400 chr4D 91.304 46 4 0 784 829 289339863 289339818 2.530000e-06 63.9
58 TraesCS6A01G218400 chr1D 95.588 68 3 0 2969 3036 91246433 91246366 3.200000e-20 110.0
59 TraesCS6A01G218400 chr1D 95.588 68 3 0 2969 3036 146357150 146357083 3.200000e-20 110.0
60 TraesCS6A01G218400 chr1D 95.588 68 3 0 2969 3036 239797645 239797712 3.200000e-20 110.0
61 TraesCS6A01G218400 chr1D 88.889 45 3 2 787 829 400959447 400959491 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G218400 chr6A 404359520 404362555 3035 False 2618 5110 100.000 1 3036 2 chr6A.!!$F2 3035
1 TraesCS6A01G218400 chr6A 12221428 12222206 778 False 1094 1094 91.985 1 784 1 chr6A.!!$F1 783
2 TraesCS6A01G218400 chr6A 578439012 578439775 763 True 898 898 87.802 1 784 1 chr6A.!!$R2 783
3 TraesCS6A01G218400 chr6A 488406652 488407414 762 True 869 869 87.166 1 784 1 chr6A.!!$R1 783
4 TraesCS6A01G218400 chr6A 590112769 590113536 767 True 861 861 86.852 1 788 1 chr6A.!!$R3 787
5 TraesCS6A01G218400 chr6D 283804950 283806581 1631 False 1090 2039 92.060 784 2412 2 chr6D.!!$F9 1628
6 TraesCS6A01G218400 chr6B 444740216 444741642 1426 False 1565 1565 86.983 993 2412 1 chr6B.!!$F2 1419
7 TraesCS6A01G218400 chr7A 158194549 158195329 780 False 1184 1184 94.013 1 784 1 chr7A.!!$F1 783
8 TraesCS6A01G218400 chr7A 159733947 159734666 719 False 1085 1085 93.897 1 719 1 chr7A.!!$F2 718
9 TraesCS6A01G218400 chr5A 51904122 51904906 784 False 1122 1122 92.503 1 784 1 chr5A.!!$F1 783
10 TraesCS6A01G218400 chr4B 165027717 165028467 750 False 1002 1002 90.741 1 753 1 chr4B.!!$F1 752
11 TraesCS6A01G218400 chr4B 438354393 438355157 764 True 889 889 87.563 1 785 1 chr4B.!!$R1 784
12 TraesCS6A01G218400 chr3A 677835254 677836031 777 False 990 990 89.655 1 780 1 chr3A.!!$F1 779
13 TraesCS6A01G218400 chr1A 209393384 209394146 762 True 896 896 87.786 1 784 1 chr1A.!!$R2 783
14 TraesCS6A01G218400 chr1A 6872793 6873565 772 True 865 865 86.826 1 793 1 chr1A.!!$R1 792
15 TraesCS6A01G218400 chr4A 647519421 647520184 763 True 893 893 87.675 1 784 1 chr4A.!!$R1 783
16 TraesCS6A01G218400 chr1B 130720745 130721421 676 True 870 870 89.898 105 783 1 chr1B.!!$R1 678
17 TraesCS6A01G218400 chr1B 131287425 131287995 570 True 723 723 89.547 105 676 1 chr1B.!!$R2 571
18 TraesCS6A01G218400 chr5B 488522499 488523261 762 True 869 869 87.166 1 784 1 chr5B.!!$R2 783
19 TraesCS6A01G218400 chr7D 53256632 53257161 529 True 296 296 77.551 212 728 1 chr7D.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1048 0.037303 CAGCCCACAGGAACATGAGT 59.963 55.0 0.0 0.0 33.47 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2712 0.115745 ACCTCCTAAACCCACTCCGA 59.884 55.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 208 8.763356 CGAAAAGGATCACAAAAATTCAATCAA 58.237 29.630 0.00 0.00 0.00 2.57
262 264 5.968528 ACCAAACCATCGCTTACATAAAA 57.031 34.783 0.00 0.00 0.00 1.52
495 503 2.030363 TCATGAAAAACACCATGACGCC 60.030 45.455 0.00 0.00 42.76 5.68
530 555 4.742167 GGACACATCATTCATCAGTCTACG 59.258 45.833 0.00 0.00 0.00 3.51
559 584 5.629133 GCAGGGTCTATCAATACAGTTTCCA 60.629 44.000 0.00 0.00 0.00 3.53
605 631 6.759827 GTGACGCCTTAGGAAATAAAGTCATA 59.240 38.462 0.69 0.00 36.08 2.15
687 714 7.297391 TCATGACATGATTTTGACGTACTTTG 58.703 34.615 14.24 0.00 33.59 2.77
790 819 4.717778 TGGGCCTATTTGCTAGTTGTACTA 59.282 41.667 4.53 0.00 0.00 1.82
794 823 7.284716 GGGCCTATTTGCTAGTTGTACTAAAAT 59.715 37.037 0.84 0.00 30.55 1.82
830 859 6.338146 TGAGACACTTATTTTAGGACGGATG 58.662 40.000 0.00 0.00 0.00 3.51
880 909 5.556915 ACTCACATTCGAAGAACCCATTTA 58.443 37.500 3.35 0.00 45.90 1.40
881 910 6.001460 ACTCACATTCGAAGAACCCATTTAA 58.999 36.000 3.35 0.00 45.90 1.52
882 911 6.488683 ACTCACATTCGAAGAACCCATTTAAA 59.511 34.615 3.35 0.00 45.90 1.52
883 912 7.013846 ACTCACATTCGAAGAACCCATTTAAAA 59.986 33.333 3.35 0.00 45.90 1.52
918 984 4.968259 AGAACCCAAAAATTTGTAAGCCC 58.032 39.130 5.27 0.00 36.45 5.19
952 1018 2.124278 GGCGAATGGAGGGGGAAC 60.124 66.667 0.00 0.00 0.00 3.62
982 1048 0.037303 CAGCCCACAGGAACATGAGT 59.963 55.000 0.00 0.00 33.47 3.41
990 1056 1.132453 CAGGAACATGAGTCGCGTAGA 59.868 52.381 5.77 0.00 0.00 2.59
998 1064 2.185103 GAGTCGCGTAGATAGGCCCG 62.185 65.000 5.77 0.00 33.84 6.13
1036 1102 1.304464 GGAAGGGAAGGCAACAGGG 60.304 63.158 0.00 0.00 41.41 4.45
1309 1392 1.445238 GCACGCGCTCTCTTCTTCT 60.445 57.895 5.73 0.00 34.30 2.85
1325 1414 8.293216 TCTCTTCTTCTTCTTCCTAATCCCTAT 58.707 37.037 0.00 0.00 0.00 2.57
1326 1415 8.485578 TCTTCTTCTTCTTCCTAATCCCTATC 57.514 38.462 0.00 0.00 0.00 2.08
1327 1416 8.293216 TCTTCTTCTTCTTCCTAATCCCTATCT 58.707 37.037 0.00 0.00 0.00 1.98
1328 1417 9.594936 CTTCTTCTTCTTCCTAATCCCTATCTA 57.405 37.037 0.00 0.00 0.00 1.98
1329 1418 9.594936 TTCTTCTTCTTCCTAATCCCTATCTAG 57.405 37.037 0.00 0.00 0.00 2.43
1331 1420 6.257586 TCTTCTTCCTAATCCCTATCTAGGC 58.742 44.000 0.00 0.00 42.26 3.93
1332 1421 5.616975 TCTTCCTAATCCCTATCTAGGCA 57.383 43.478 0.00 0.00 42.26 4.75
1351 1440 2.514824 GGCACGGATCTGAAGCCC 60.515 66.667 23.61 11.56 39.42 5.19
1371 1460 0.684479 CAGTCAGGGTCTCCATCCGA 60.684 60.000 0.00 0.00 34.83 4.55
1372 1461 0.263172 AGTCAGGGTCTCCATCCGAT 59.737 55.000 0.00 0.00 34.83 4.18
1373 1462 0.676736 GTCAGGGTCTCCATCCGATC 59.323 60.000 0.00 0.00 34.83 3.69
1374 1463 0.470080 TCAGGGTCTCCATCCGATCC 60.470 60.000 0.00 0.00 34.83 3.36
1375 1464 1.531840 AGGGTCTCCATCCGATCCG 60.532 63.158 0.00 0.00 36.76 4.18
1393 1482 3.865929 GATCCGATCCCATGCGCGT 62.866 63.158 8.43 0.00 0.00 6.01
1398 1487 2.046411 ATCCCATGCGCGTTGTCA 60.046 55.556 8.43 0.00 0.00 3.58
1446 1561 1.055040 GGGCAGAGTAGATGATGGCT 58.945 55.000 0.00 0.00 38.23 4.75
1511 1626 6.920569 ACGAATCAAGTTAGAAAACTGTGT 57.079 33.333 0.00 0.00 45.37 3.72
1543 1658 2.425312 CCGGATATACTCCTGCTAGCTG 59.575 54.545 17.23 15.65 42.47 4.24
1550 1665 3.314307 ACTCCTGCTAGCTGGTGTATA 57.686 47.619 33.82 18.64 39.04 1.47
1568 1683 9.283768 TGGTGTATAATTAGCTTTACATGGATG 57.716 33.333 0.00 0.00 0.00 3.51
1641 1761 7.597288 TTACCTATATATGTGTGTGCAGTCT 57.403 36.000 0.00 0.00 0.00 3.24
1777 1897 4.236527 ACTTTGACTGTTTCTGAGGGTT 57.763 40.909 0.00 0.00 0.00 4.11
1778 1898 4.600062 ACTTTGACTGTTTCTGAGGGTTT 58.400 39.130 0.00 0.00 0.00 3.27
1797 1917 4.540824 GTTTTTCAATCTGCTCCACACTC 58.459 43.478 0.00 0.00 0.00 3.51
1844 1964 4.322198 CCCTATGTAATGCATGCATTTCCC 60.322 45.833 41.74 30.26 43.32 3.97
1886 2009 5.300034 CCTTGATGAGCATGTATTTGCCTTA 59.700 40.000 0.00 0.00 43.83 2.69
1935 2059 5.878116 GCATACCTTCAAACTGTATGTGGTA 59.122 40.000 9.75 0.00 42.32 3.25
1966 2090 9.780413 CTTTGGATAAGAGAATGCTAAACTTTC 57.220 33.333 0.00 0.00 33.63 2.62
2005 2131 2.480037 TGTTGCGTGATTTGCTGTCTAG 59.520 45.455 0.00 0.00 0.00 2.43
2011 2137 3.428725 CGTGATTTGCTGTCTAGAGAGCT 60.429 47.826 34.02 19.80 46.60 4.09
2058 2199 5.351948 TGTGTGTGTGGTATATACAGCAT 57.648 39.130 14.70 0.00 30.51 3.79
2062 2203 3.892588 TGTGTGGTATATACAGCATCCGA 59.107 43.478 14.70 0.00 0.00 4.55
2155 2296 3.080300 TGGGGGTGATGACATACAAAC 57.920 47.619 0.00 0.00 0.00 2.93
2156 2297 2.647299 TGGGGGTGATGACATACAAACT 59.353 45.455 0.00 0.00 0.00 2.66
2157 2298 3.016736 GGGGGTGATGACATACAAACTG 58.983 50.000 0.00 0.00 0.00 3.16
2158 2299 3.308117 GGGGGTGATGACATACAAACTGA 60.308 47.826 0.00 0.00 0.00 3.41
2159 2300 4.331968 GGGGTGATGACATACAAACTGAA 58.668 43.478 0.00 0.00 0.00 3.02
2160 2301 4.156008 GGGGTGATGACATACAAACTGAAC 59.844 45.833 0.00 0.00 0.00 3.18
2161 2302 4.759693 GGGTGATGACATACAAACTGAACA 59.240 41.667 0.00 0.00 0.00 3.18
2162 2303 5.415701 GGGTGATGACATACAAACTGAACAT 59.584 40.000 0.00 0.00 0.00 2.71
2163 2304 6.597672 GGGTGATGACATACAAACTGAACATA 59.402 38.462 0.00 0.00 0.00 2.29
2314 2456 0.994263 GCACGCATTTGAGGCAATTC 59.006 50.000 0.00 0.00 0.00 2.17
2321 2463 4.736793 CGCATTTGAGGCAATTCTATTGAC 59.263 41.667 3.70 0.35 0.00 3.18
2349 2491 2.507452 CCCGGAGCTGCATCATGA 59.493 61.111 0.73 0.00 0.00 3.07
2405 2547 6.183360 GGTGTACTTCACTATGATTGACAACG 60.183 42.308 0.00 0.00 45.50 4.10
2412 2554 2.925578 ATGATTGACAACGGCATGTG 57.074 45.000 0.00 0.00 32.57 3.21
2413 2555 1.603456 TGATTGACAACGGCATGTGT 58.397 45.000 0.00 0.00 32.57 3.72
2414 2556 1.952990 TGATTGACAACGGCATGTGTT 59.047 42.857 0.00 0.00 32.57 3.32
2415 2557 2.360483 TGATTGACAACGGCATGTGTTT 59.640 40.909 3.15 0.00 32.57 2.83
2416 2558 3.565902 TGATTGACAACGGCATGTGTTTA 59.434 39.130 3.15 0.00 32.57 2.01
2417 2559 3.341857 TTGACAACGGCATGTGTTTAC 57.658 42.857 3.15 2.44 32.57 2.01
2418 2560 1.604755 TGACAACGGCATGTGTTTACC 59.395 47.619 3.15 0.00 32.57 2.85
2419 2561 1.877443 GACAACGGCATGTGTTTACCT 59.123 47.619 3.15 0.00 32.57 3.08
2420 2562 1.877443 ACAACGGCATGTGTTTACCTC 59.123 47.619 3.15 0.00 30.82 3.85
2421 2563 2.151202 CAACGGCATGTGTTTACCTCT 58.849 47.619 3.15 0.00 0.00 3.69
2422 2564 3.244284 ACAACGGCATGTGTTTACCTCTA 60.244 43.478 3.15 0.00 30.82 2.43
2423 2565 2.968675 ACGGCATGTGTTTACCTCTAC 58.031 47.619 0.00 0.00 0.00 2.59
2424 2566 2.277084 CGGCATGTGTTTACCTCTACC 58.723 52.381 0.00 0.00 0.00 3.18
2425 2567 2.277084 GGCATGTGTTTACCTCTACCG 58.723 52.381 0.00 0.00 0.00 4.02
2426 2568 1.664151 GCATGTGTTTACCTCTACCGC 59.336 52.381 0.00 0.00 0.00 5.68
2427 2569 2.277084 CATGTGTTTACCTCTACCGCC 58.723 52.381 0.00 0.00 0.00 6.13
2428 2570 1.636148 TGTGTTTACCTCTACCGCCT 58.364 50.000 0.00 0.00 0.00 5.52
2429 2571 1.972795 TGTGTTTACCTCTACCGCCTT 59.027 47.619 0.00 0.00 0.00 4.35
2430 2572 3.164268 TGTGTTTACCTCTACCGCCTTA 58.836 45.455 0.00 0.00 0.00 2.69
2431 2573 3.194116 TGTGTTTACCTCTACCGCCTTAG 59.806 47.826 0.00 0.00 0.00 2.18
2432 2574 3.445096 GTGTTTACCTCTACCGCCTTAGA 59.555 47.826 0.00 0.00 0.00 2.10
2433 2575 3.445096 TGTTTACCTCTACCGCCTTAGAC 59.555 47.826 0.00 0.00 0.00 2.59
2434 2576 1.959042 TACCTCTACCGCCTTAGACG 58.041 55.000 0.00 0.00 0.00 4.18
2441 2583 2.654877 CGCCTTAGACGGTGGTGT 59.345 61.111 0.00 0.00 0.00 4.16
2442 2584 1.885157 CGCCTTAGACGGTGGTGTA 59.115 57.895 0.00 0.00 0.00 2.90
2443 2585 0.458669 CGCCTTAGACGGTGGTGTAT 59.541 55.000 0.00 0.00 0.00 2.29
2444 2586 1.535437 CGCCTTAGACGGTGGTGTATC 60.535 57.143 0.00 0.00 0.00 2.24
2445 2587 1.479323 GCCTTAGACGGTGGTGTATCA 59.521 52.381 0.00 0.00 0.00 2.15
2446 2588 2.093869 GCCTTAGACGGTGGTGTATCAA 60.094 50.000 0.00 0.00 0.00 2.57
2447 2589 3.618019 GCCTTAGACGGTGGTGTATCAAA 60.618 47.826 0.00 0.00 0.00 2.69
2448 2590 4.766375 CCTTAGACGGTGGTGTATCAAAT 58.234 43.478 0.00 0.00 0.00 2.32
2449 2591 4.809426 CCTTAGACGGTGGTGTATCAAATC 59.191 45.833 0.00 0.00 0.00 2.17
2450 2592 3.261981 AGACGGTGGTGTATCAAATCC 57.738 47.619 0.00 0.00 0.00 3.01
2451 2593 2.569853 AGACGGTGGTGTATCAAATCCA 59.430 45.455 0.00 0.00 0.00 3.41
2452 2594 3.199946 AGACGGTGGTGTATCAAATCCAT 59.800 43.478 0.00 0.00 32.45 3.41
2453 2595 3.278574 ACGGTGGTGTATCAAATCCATG 58.721 45.455 0.00 0.00 32.45 3.66
2454 2596 2.033299 CGGTGGTGTATCAAATCCATGC 59.967 50.000 0.00 0.00 32.45 4.06
2455 2597 3.023119 GGTGGTGTATCAAATCCATGCA 58.977 45.455 0.00 0.00 32.45 3.96
2456 2598 3.638160 GGTGGTGTATCAAATCCATGCAT 59.362 43.478 0.00 0.00 32.45 3.96
2457 2599 4.099881 GGTGGTGTATCAAATCCATGCATT 59.900 41.667 0.00 0.00 32.45 3.56
2458 2600 5.395546 GGTGGTGTATCAAATCCATGCATTT 60.396 40.000 0.00 0.00 32.45 2.32
2459 2601 5.750067 GTGGTGTATCAAATCCATGCATTTC 59.250 40.000 0.00 0.00 32.45 2.17
2460 2602 5.657745 TGGTGTATCAAATCCATGCATTTCT 59.342 36.000 0.00 0.00 0.00 2.52
2461 2603 6.154877 TGGTGTATCAAATCCATGCATTTCTT 59.845 34.615 0.00 0.00 0.00 2.52
2462 2604 6.698766 GGTGTATCAAATCCATGCATTTCTTC 59.301 38.462 0.00 0.00 0.00 2.87
2463 2605 7.259882 GTGTATCAAATCCATGCATTTCTTCA 58.740 34.615 0.00 0.00 0.00 3.02
2464 2606 7.760794 GTGTATCAAATCCATGCATTTCTTCAA 59.239 33.333 0.00 0.00 0.00 2.69
2465 2607 8.479689 TGTATCAAATCCATGCATTTCTTCAAT 58.520 29.630 0.00 0.00 0.00 2.57
2466 2608 9.970395 GTATCAAATCCATGCATTTCTTCAATA 57.030 29.630 0.00 0.00 0.00 1.90
2468 2610 7.494211 TCAAATCCATGCATTTCTTCAATAGG 58.506 34.615 0.00 0.00 0.00 2.57
2469 2611 7.342541 TCAAATCCATGCATTTCTTCAATAGGA 59.657 33.333 0.00 0.00 0.00 2.94
2470 2612 6.896021 ATCCATGCATTTCTTCAATAGGAG 57.104 37.500 0.00 0.00 0.00 3.69
2471 2613 5.135383 TCCATGCATTTCTTCAATAGGAGG 58.865 41.667 0.00 0.00 0.00 4.30
2472 2614 4.891756 CCATGCATTTCTTCAATAGGAGGT 59.108 41.667 0.00 0.00 0.00 3.85
2473 2615 6.064060 CCATGCATTTCTTCAATAGGAGGTA 58.936 40.000 0.00 0.00 0.00 3.08
2474 2616 6.547141 CCATGCATTTCTTCAATAGGAGGTAA 59.453 38.462 0.00 0.00 0.00 2.85
2475 2617 7.255381 CCATGCATTTCTTCAATAGGAGGTAAG 60.255 40.741 0.00 0.00 0.00 2.34
2476 2618 6.721318 TGCATTTCTTCAATAGGAGGTAAGT 58.279 36.000 0.00 0.00 0.00 2.24
2477 2619 7.175104 TGCATTTCTTCAATAGGAGGTAAGTT 58.825 34.615 0.00 0.00 0.00 2.66
2478 2620 7.669722 TGCATTTCTTCAATAGGAGGTAAGTTT 59.330 33.333 0.00 0.00 0.00 2.66
2479 2621 8.523658 GCATTTCTTCAATAGGAGGTAAGTTTT 58.476 33.333 0.00 0.00 0.00 2.43
2482 2624 9.635404 TTTCTTCAATAGGAGGTAAGTTTTTGA 57.365 29.630 0.00 0.00 0.00 2.69
2483 2625 8.617290 TCTTCAATAGGAGGTAAGTTTTTGAC 57.383 34.615 0.00 0.00 0.00 3.18
2484 2626 8.215050 TCTTCAATAGGAGGTAAGTTTTTGACA 58.785 33.333 0.00 0.00 0.00 3.58
2485 2627 8.934023 TTCAATAGGAGGTAAGTTTTTGACAT 57.066 30.769 0.00 0.00 0.00 3.06
2486 2628 8.561738 TCAATAGGAGGTAAGTTTTTGACATC 57.438 34.615 0.00 0.00 0.00 3.06
2487 2629 8.383175 TCAATAGGAGGTAAGTTTTTGACATCT 58.617 33.333 0.00 0.00 0.00 2.90
2488 2630 9.014297 CAATAGGAGGTAAGTTTTTGACATCTT 57.986 33.333 0.00 0.00 0.00 2.40
2489 2631 8.794335 ATAGGAGGTAAGTTTTTGACATCTTC 57.206 34.615 0.00 0.00 0.00 2.87
2490 2632 6.601332 AGGAGGTAAGTTTTTGACATCTTCA 58.399 36.000 0.00 0.00 0.00 3.02
2491 2633 6.712547 AGGAGGTAAGTTTTTGACATCTTCAG 59.287 38.462 0.00 0.00 34.94 3.02
2492 2634 6.319141 AGGTAAGTTTTTGACATCTTCAGC 57.681 37.500 0.00 0.00 34.94 4.26
2493 2635 6.064717 AGGTAAGTTTTTGACATCTTCAGCT 58.935 36.000 0.00 0.00 34.94 4.24
2494 2636 6.547510 AGGTAAGTTTTTGACATCTTCAGCTT 59.452 34.615 0.00 0.00 34.94 3.74
2495 2637 7.068716 AGGTAAGTTTTTGACATCTTCAGCTTT 59.931 33.333 0.00 0.00 34.94 3.51
2496 2638 8.349983 GGTAAGTTTTTGACATCTTCAGCTTTA 58.650 33.333 0.00 0.00 34.94 1.85
2497 2639 9.387123 GTAAGTTTTTGACATCTTCAGCTTTAG 57.613 33.333 0.00 0.00 34.94 1.85
2498 2640 7.573968 AGTTTTTGACATCTTCAGCTTTAGT 57.426 32.000 0.00 0.00 34.94 2.24
2499 2641 8.677148 AGTTTTTGACATCTTCAGCTTTAGTA 57.323 30.769 0.00 0.00 34.94 1.82
2500 2642 8.560374 AGTTTTTGACATCTTCAGCTTTAGTAC 58.440 33.333 0.00 0.00 34.94 2.73
2501 2643 7.435068 TTTTGACATCTTCAGCTTTAGTACC 57.565 36.000 0.00 0.00 34.94 3.34
2502 2644 6.360370 TTGACATCTTCAGCTTTAGTACCT 57.640 37.500 0.00 0.00 34.94 3.08
2503 2645 6.360370 TGACATCTTCAGCTTTAGTACCTT 57.640 37.500 0.00 0.00 0.00 3.50
2504 2646 6.769512 TGACATCTTCAGCTTTAGTACCTTT 58.230 36.000 0.00 0.00 0.00 3.11
2505 2647 7.224297 TGACATCTTCAGCTTTAGTACCTTTT 58.776 34.615 0.00 0.00 0.00 2.27
2506 2648 7.719633 TGACATCTTCAGCTTTAGTACCTTTTT 59.280 33.333 0.00 0.00 0.00 1.94
2526 2668 4.355543 TTTCTTCATACATTTCGCTGCC 57.644 40.909 0.00 0.00 0.00 4.85
2527 2669 3.266510 TCTTCATACATTTCGCTGCCT 57.733 42.857 0.00 0.00 0.00 4.75
2528 2670 3.198068 TCTTCATACATTTCGCTGCCTC 58.802 45.455 0.00 0.00 0.00 4.70
2529 2671 2.988010 TCATACATTTCGCTGCCTCT 57.012 45.000 0.00 0.00 0.00 3.69
2530 2672 3.266510 TCATACATTTCGCTGCCTCTT 57.733 42.857 0.00 0.00 0.00 2.85
2531 2673 2.938451 TCATACATTTCGCTGCCTCTTG 59.062 45.455 0.00 0.00 0.00 3.02
2532 2674 1.086696 TACATTTCGCTGCCTCTTGC 58.913 50.000 0.00 0.00 41.77 4.01
2544 2686 3.482156 GCCTCTTGCATATCTTCTGGA 57.518 47.619 0.00 0.00 40.77 3.86
2545 2687 3.137533 GCCTCTTGCATATCTTCTGGAC 58.862 50.000 0.00 0.00 40.77 4.02
2546 2688 3.181456 GCCTCTTGCATATCTTCTGGACT 60.181 47.826 0.00 0.00 40.77 3.85
2547 2689 4.039730 GCCTCTTGCATATCTTCTGGACTA 59.960 45.833 0.00 0.00 40.77 2.59
2548 2690 5.453903 GCCTCTTGCATATCTTCTGGACTAA 60.454 44.000 0.00 0.00 40.77 2.24
2549 2691 6.222389 CCTCTTGCATATCTTCTGGACTAAG 58.778 44.000 0.00 0.00 0.00 2.18
2550 2692 6.041409 CCTCTTGCATATCTTCTGGACTAAGA 59.959 42.308 0.00 0.00 37.38 2.10
2551 2693 7.256261 CCTCTTGCATATCTTCTGGACTAAGAT 60.256 40.741 0.00 0.00 44.07 2.40
2552 2694 8.712228 TCTTGCATATCTTCTGGACTAAGATA 57.288 34.615 7.72 7.72 45.34 1.98
2562 2704 9.756571 TCTTCTGGACTAAGATATAAGATACCC 57.243 37.037 0.00 0.00 0.00 3.69
2563 2705 8.896722 TTCTGGACTAAGATATAAGATACCCC 57.103 38.462 0.00 0.00 0.00 4.95
2564 2706 8.245929 TCTGGACTAAGATATAAGATACCCCT 57.754 38.462 0.00 0.00 0.00 4.79
2565 2707 8.337739 TCTGGACTAAGATATAAGATACCCCTC 58.662 40.741 0.00 0.00 0.00 4.30
2566 2708 8.245929 TGGACTAAGATATAAGATACCCCTCT 57.754 38.462 0.00 0.00 0.00 3.69
2567 2709 8.689054 TGGACTAAGATATAAGATACCCCTCTT 58.311 37.037 0.00 0.00 38.90 2.85
2568 2710 9.192642 GGACTAAGATATAAGATACCCCTCTTC 57.807 40.741 0.00 0.00 36.82 2.87
2569 2711 9.984590 GACTAAGATATAAGATACCCCTCTTCT 57.015 37.037 0.00 0.00 36.82 2.85
2572 2714 7.948034 AGATATAAGATACCCCTCTTCTTCG 57.052 40.000 0.00 0.00 36.82 3.79
2573 2715 6.893005 AGATATAAGATACCCCTCTTCTTCGG 59.107 42.308 0.00 0.00 36.82 4.30
2574 2716 3.399952 AAGATACCCCTCTTCTTCGGA 57.600 47.619 0.00 0.00 29.38 4.55
2575 2717 2.952116 AGATACCCCTCTTCTTCGGAG 58.048 52.381 0.00 0.00 0.00 4.63
2576 2718 2.245287 AGATACCCCTCTTCTTCGGAGT 59.755 50.000 0.00 0.00 0.00 3.85
2577 2719 1.848652 TACCCCTCTTCTTCGGAGTG 58.151 55.000 0.00 0.00 0.00 3.51
2578 2720 0.905337 ACCCCTCTTCTTCGGAGTGG 60.905 60.000 0.00 0.00 35.09 4.00
2579 2721 1.617947 CCCCTCTTCTTCGGAGTGGG 61.618 65.000 2.85 2.85 36.09 4.61
2580 2722 0.905337 CCCTCTTCTTCGGAGTGGGT 60.905 60.000 1.83 0.00 0.00 4.51
2581 2723 0.977395 CCTCTTCTTCGGAGTGGGTT 59.023 55.000 0.00 0.00 0.00 4.11
2582 2724 1.348036 CCTCTTCTTCGGAGTGGGTTT 59.652 52.381 0.00 0.00 0.00 3.27
2583 2725 2.565834 CCTCTTCTTCGGAGTGGGTTTA 59.434 50.000 0.00 0.00 0.00 2.01
2584 2726 3.368531 CCTCTTCTTCGGAGTGGGTTTAG 60.369 52.174 0.00 0.00 0.00 1.85
2585 2727 2.565834 TCTTCTTCGGAGTGGGTTTAGG 59.434 50.000 0.00 0.00 0.00 2.69
2586 2728 2.314071 TCTTCGGAGTGGGTTTAGGA 57.686 50.000 0.00 0.00 0.00 2.94
2587 2729 2.176889 TCTTCGGAGTGGGTTTAGGAG 58.823 52.381 0.00 0.00 0.00 3.69
2588 2730 1.207329 CTTCGGAGTGGGTTTAGGAGG 59.793 57.143 0.00 0.00 0.00 4.30
2589 2731 0.115745 TCGGAGTGGGTTTAGGAGGT 59.884 55.000 0.00 0.00 0.00 3.85
2590 2732 0.249398 CGGAGTGGGTTTAGGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
2591 2733 1.652947 GGAGTGGGTTTAGGAGGTGA 58.347 55.000 0.00 0.00 0.00 4.02
2592 2734 2.197465 GGAGTGGGTTTAGGAGGTGAT 58.803 52.381 0.00 0.00 0.00 3.06
2593 2735 2.576648 GGAGTGGGTTTAGGAGGTGATT 59.423 50.000 0.00 0.00 0.00 2.57
2594 2736 3.370633 GGAGTGGGTTTAGGAGGTGATTC 60.371 52.174 0.00 0.00 0.00 2.52
2595 2737 3.256704 AGTGGGTTTAGGAGGTGATTCA 58.743 45.455 0.00 0.00 0.00 2.57
2596 2738 3.264450 AGTGGGTTTAGGAGGTGATTCAG 59.736 47.826 0.00 0.00 0.00 3.02
2597 2739 2.576191 TGGGTTTAGGAGGTGATTCAGG 59.424 50.000 0.00 0.00 0.00 3.86
2598 2740 2.844348 GGGTTTAGGAGGTGATTCAGGA 59.156 50.000 0.00 0.00 0.00 3.86
2599 2741 3.265995 GGGTTTAGGAGGTGATTCAGGAA 59.734 47.826 0.00 0.00 0.00 3.36
2600 2742 4.518249 GGTTTAGGAGGTGATTCAGGAAG 58.482 47.826 0.00 0.00 0.00 3.46
2601 2743 4.225267 GGTTTAGGAGGTGATTCAGGAAGA 59.775 45.833 0.00 0.00 0.00 2.87
2602 2744 5.423886 GTTTAGGAGGTGATTCAGGAAGAG 58.576 45.833 0.00 0.00 0.00 2.85
2603 2745 3.197927 AGGAGGTGATTCAGGAAGAGT 57.802 47.619 0.00 0.00 0.00 3.24
2604 2746 3.103742 AGGAGGTGATTCAGGAAGAGTC 58.896 50.000 0.00 0.00 33.86 3.36
2605 2747 2.169561 GGAGGTGATTCAGGAAGAGTCC 59.830 54.545 0.00 0.00 45.35 3.85
2653 2795 9.646522 ATGTTATCCAATAATTCCTTAGCTTGT 57.353 29.630 0.00 0.00 0.00 3.16
2654 2796 9.474313 TGTTATCCAATAATTCCTTAGCTTGTT 57.526 29.630 0.00 0.00 0.00 2.83
2655 2797 9.952188 GTTATCCAATAATTCCTTAGCTTGTTC 57.048 33.333 0.00 0.00 0.00 3.18
2656 2798 9.693739 TTATCCAATAATTCCTTAGCTTGTTCA 57.306 29.630 0.00 0.00 0.00 3.18
2657 2799 8.593945 ATCCAATAATTCCTTAGCTTGTTCAA 57.406 30.769 0.00 0.00 0.00 2.69
2658 2800 7.826690 TCCAATAATTCCTTAGCTTGTTCAAC 58.173 34.615 0.00 0.00 0.00 3.18
2659 2801 6.747280 CCAATAATTCCTTAGCTTGTTCAACG 59.253 38.462 0.00 0.00 0.00 4.10
2660 2802 4.766404 AATTCCTTAGCTTGTTCAACGG 57.234 40.909 0.00 0.00 0.00 4.44
2661 2803 2.922740 TCCTTAGCTTGTTCAACGGT 57.077 45.000 0.00 0.00 0.00 4.83
2662 2804 3.202829 TCCTTAGCTTGTTCAACGGTT 57.797 42.857 0.00 0.00 0.00 4.44
2663 2805 3.135994 TCCTTAGCTTGTTCAACGGTTC 58.864 45.455 0.00 0.00 0.00 3.62
2664 2806 2.096417 CCTTAGCTTGTTCAACGGTTCG 60.096 50.000 0.00 0.00 0.00 3.95
2665 2807 2.228138 TAGCTTGTTCAACGGTTCGT 57.772 45.000 0.00 0.00 43.97 3.85
2677 2819 2.358015 ACGGTTCGTTCCTTGAAAACA 58.642 42.857 0.00 0.00 36.35 2.83
2678 2820 2.096335 ACGGTTCGTTCCTTGAAAACAC 59.904 45.455 0.00 0.00 36.35 3.32
2679 2821 2.096174 CGGTTCGTTCCTTGAAAACACA 59.904 45.455 0.00 0.00 0.00 3.72
2680 2822 3.426426 CGGTTCGTTCCTTGAAAACACAA 60.426 43.478 0.00 0.00 0.00 3.33
2681 2823 3.855379 GGTTCGTTCCTTGAAAACACAAC 59.145 43.478 0.00 0.00 0.00 3.32
2682 2824 3.768468 TCGTTCCTTGAAAACACAACC 57.232 42.857 0.00 0.00 0.00 3.77
2683 2825 3.082548 TCGTTCCTTGAAAACACAACCA 58.917 40.909 0.00 0.00 0.00 3.67
2684 2826 3.127895 TCGTTCCTTGAAAACACAACCAG 59.872 43.478 0.00 0.00 0.00 4.00
2685 2827 3.186909 GTTCCTTGAAAACACAACCAGC 58.813 45.455 0.00 0.00 0.00 4.85
2686 2828 2.451490 TCCTTGAAAACACAACCAGCA 58.549 42.857 0.00 0.00 0.00 4.41
2687 2829 2.165437 TCCTTGAAAACACAACCAGCAC 59.835 45.455 0.00 0.00 0.00 4.40
2688 2830 2.094286 CCTTGAAAACACAACCAGCACA 60.094 45.455 0.00 0.00 0.00 4.57
2689 2831 3.583806 CTTGAAAACACAACCAGCACAA 58.416 40.909 0.00 0.00 0.00 3.33
2690 2832 2.953020 TGAAAACACAACCAGCACAAC 58.047 42.857 0.00 0.00 0.00 3.32
2691 2833 2.560542 TGAAAACACAACCAGCACAACT 59.439 40.909 0.00 0.00 0.00 3.16
2692 2834 3.759086 TGAAAACACAACCAGCACAACTA 59.241 39.130 0.00 0.00 0.00 2.24
2693 2835 4.400884 TGAAAACACAACCAGCACAACTAT 59.599 37.500 0.00 0.00 0.00 2.12
2694 2836 4.568152 AAACACAACCAGCACAACTATC 57.432 40.909 0.00 0.00 0.00 2.08
2695 2837 3.492102 ACACAACCAGCACAACTATCT 57.508 42.857 0.00 0.00 0.00 1.98
2696 2838 4.617253 ACACAACCAGCACAACTATCTA 57.383 40.909 0.00 0.00 0.00 1.98
2697 2839 4.569943 ACACAACCAGCACAACTATCTAG 58.430 43.478 0.00 0.00 0.00 2.43
2698 2840 3.935203 CACAACCAGCACAACTATCTAGG 59.065 47.826 0.00 0.00 0.00 3.02
2699 2841 3.838317 ACAACCAGCACAACTATCTAGGA 59.162 43.478 0.00 0.00 0.00 2.94
2700 2842 4.286032 ACAACCAGCACAACTATCTAGGAA 59.714 41.667 0.00 0.00 0.00 3.36
2701 2843 5.221843 ACAACCAGCACAACTATCTAGGAAA 60.222 40.000 0.00 0.00 0.00 3.13
2702 2844 5.700402 ACCAGCACAACTATCTAGGAAAT 57.300 39.130 0.00 0.00 0.00 2.17
2703 2845 5.675538 ACCAGCACAACTATCTAGGAAATC 58.324 41.667 0.00 0.00 0.00 2.17
2704 2846 5.059833 CCAGCACAACTATCTAGGAAATCC 58.940 45.833 0.00 0.00 0.00 3.01
2706 2848 6.352516 CAGCACAACTATCTAGGAAATCCTT 58.647 40.000 7.39 0.00 46.09 3.36
2707 2849 7.419057 CCAGCACAACTATCTAGGAAATCCTTA 60.419 40.741 7.39 0.00 46.09 2.69
2708 2850 7.987458 CAGCACAACTATCTAGGAAATCCTTAA 59.013 37.037 7.39 0.00 46.09 1.85
2709 2851 8.548877 AGCACAACTATCTAGGAAATCCTTAAA 58.451 33.333 7.39 0.00 46.09 1.52
2710 2852 9.174166 GCACAACTATCTAGGAAATCCTTAAAA 57.826 33.333 7.39 0.00 46.09 1.52
2712 2854 9.397280 ACAACTATCTAGGAAATCCTTAAAAGC 57.603 33.333 7.39 0.00 46.09 3.51
2713 2855 9.396022 CAACTATCTAGGAAATCCTTAAAAGCA 57.604 33.333 7.39 0.00 46.09 3.91
2715 2857 9.785982 ACTATCTAGGAAATCCTTAAAAGCATC 57.214 33.333 7.39 0.00 46.09 3.91
2716 2858 9.784531 CTATCTAGGAAATCCTTAAAAGCATCA 57.215 33.333 7.39 0.00 46.09 3.07
2717 2859 8.688747 ATCTAGGAAATCCTTAAAAGCATCAG 57.311 34.615 7.39 0.00 46.09 2.90
2718 2860 7.633789 TCTAGGAAATCCTTAAAAGCATCAGT 58.366 34.615 7.39 0.00 46.09 3.41
2719 2861 8.109634 TCTAGGAAATCCTTAAAAGCATCAGTT 58.890 33.333 7.39 0.00 46.09 3.16
2720 2862 9.396022 CTAGGAAATCCTTAAAAGCATCAGTTA 57.604 33.333 7.39 0.00 46.09 2.24
2721 2863 8.286191 AGGAAATCCTTAAAAGCATCAGTTAG 57.714 34.615 0.00 0.00 46.09 2.34
2722 2864 7.890655 AGGAAATCCTTAAAAGCATCAGTTAGT 59.109 33.333 0.00 0.00 46.09 2.24
2723 2865 8.184848 GGAAATCCTTAAAAGCATCAGTTAGTC 58.815 37.037 0.00 0.00 0.00 2.59
2724 2866 7.631717 AATCCTTAAAAGCATCAGTTAGTCC 57.368 36.000 0.00 0.00 0.00 3.85
2725 2867 6.121776 TCCTTAAAAGCATCAGTTAGTCCA 57.878 37.500 0.00 0.00 0.00 4.02
2726 2868 6.721318 TCCTTAAAAGCATCAGTTAGTCCAT 58.279 36.000 0.00 0.00 0.00 3.41
2727 2869 7.175104 TCCTTAAAAGCATCAGTTAGTCCATT 58.825 34.615 0.00 0.00 0.00 3.16
2728 2870 8.325787 TCCTTAAAAGCATCAGTTAGTCCATTA 58.674 33.333 0.00 0.00 0.00 1.90
2729 2871 9.125026 CCTTAAAAGCATCAGTTAGTCCATTAT 57.875 33.333 0.00 0.00 0.00 1.28
2733 2875 9.905713 AAAAGCATCAGTTAGTCCATTATAGAA 57.094 29.630 0.00 0.00 0.00 2.10
2734 2876 9.553064 AAAGCATCAGTTAGTCCATTATAGAAG 57.447 33.333 0.00 0.00 0.00 2.85
2735 2877 8.484214 AGCATCAGTTAGTCCATTATAGAAGA 57.516 34.615 0.00 0.00 0.00 2.87
2736 2878 9.099071 AGCATCAGTTAGTCCATTATAGAAGAT 57.901 33.333 0.00 0.00 0.00 2.40
2991 3133 6.988109 CTCTCTTCTTCAATTTGCACAAAG 57.012 37.500 1.92 0.00 33.32 2.77
2992 3134 5.284079 TCTCTTCTTCAATTTGCACAAAGC 58.716 37.500 1.92 0.00 45.96 3.51
2993 3135 5.068198 TCTCTTCTTCAATTTGCACAAAGCT 59.932 36.000 1.92 0.00 45.94 3.74
2994 3136 6.262944 TCTCTTCTTCAATTTGCACAAAGCTA 59.737 34.615 1.92 0.00 45.94 3.32
2995 3137 6.804677 TCTTCTTCAATTTGCACAAAGCTAA 58.195 32.000 1.92 0.00 45.94 3.09
2996 3138 7.264221 TCTTCTTCAATTTGCACAAAGCTAAA 58.736 30.769 1.92 0.00 45.94 1.85
2997 3139 7.927629 TCTTCTTCAATTTGCACAAAGCTAAAT 59.072 29.630 1.92 0.00 45.94 1.40
2998 3140 9.195411 CTTCTTCAATTTGCACAAAGCTAAATA 57.805 29.630 1.92 0.00 45.94 1.40
2999 3141 9.709495 TTCTTCAATTTGCACAAAGCTAAATAT 57.291 25.926 1.92 0.00 45.94 1.28
3000 3142 9.709495 TCTTCAATTTGCACAAAGCTAAATATT 57.291 25.926 1.92 0.00 45.94 1.28
3003 3145 8.934825 TCAATTTGCACAAAGCTAAATATTTCC 58.065 29.630 3.39 0.00 45.94 3.13
3004 3146 8.938906 CAATTTGCACAAAGCTAAATATTTCCT 58.061 29.630 3.39 0.00 45.94 3.36
3005 3147 7.887996 TTTGCACAAAGCTAAATATTTCCTG 57.112 32.000 3.39 0.00 45.94 3.86
3006 3148 6.588719 TGCACAAAGCTAAATATTTCCTGT 57.411 33.333 3.39 0.11 45.94 4.00
3007 3149 7.695480 TGCACAAAGCTAAATATTTCCTGTA 57.305 32.000 3.39 0.00 45.94 2.74
3008 3150 8.116651 TGCACAAAGCTAAATATTTCCTGTAA 57.883 30.769 3.39 0.00 45.94 2.41
3009 3151 8.243426 TGCACAAAGCTAAATATTTCCTGTAAG 58.757 33.333 3.39 0.00 45.94 2.34
3026 3168 5.539582 TGTAAGGCAGCTTGTTTATTACG 57.460 39.130 0.00 0.00 0.00 3.18
3027 3169 5.239351 TGTAAGGCAGCTTGTTTATTACGA 58.761 37.500 0.00 0.00 0.00 3.43
3028 3170 4.946784 AAGGCAGCTTGTTTATTACGAG 57.053 40.909 0.00 0.00 40.69 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 9.582431 CACAAGCATTTTCTAAGAATCATGAAT 57.418 29.630 0.00 0.00 0.00 2.57
241 243 7.826260 AAATTTTATGTAAGCGATGGTTTGG 57.174 32.000 0.00 0.00 0.00 3.28
262 264 3.203934 CCTCTCCAGATCCCCTCAAAAAT 59.796 47.826 0.00 0.00 0.00 1.82
507 532 4.742167 CGTAGACTGATGAATGATGTGTCC 59.258 45.833 0.00 0.00 0.00 4.02
530 555 5.070580 ACTGTATTGATAGACCCTGCCTAAC 59.929 44.000 0.00 0.00 0.00 2.34
687 714 6.492254 ACGGACTTTTAAAATGTCACTTCAC 58.508 36.000 21.48 9.98 32.84 3.18
799 828 9.052759 GTCCTAAAATAAGTGTCTCAACTTTGA 57.947 33.333 0.00 0.00 40.77 2.69
881 910 4.867086 TGGGTTCTCTTCCTCAACTTTTT 58.133 39.130 0.00 0.00 0.00 1.94
882 911 4.519906 TGGGTTCTCTTCCTCAACTTTT 57.480 40.909 0.00 0.00 0.00 2.27
883 912 4.519906 TTGGGTTCTCTTCCTCAACTTT 57.480 40.909 0.00 0.00 0.00 2.66
886 915 5.791336 ATTTTTGGGTTCTCTTCCTCAAC 57.209 39.130 0.00 0.00 0.00 3.18
888 917 5.660864 ACAAATTTTTGGGTTCTCTTCCTCA 59.339 36.000 7.85 0.00 42.34 3.86
891 920 6.423905 GCTTACAAATTTTTGGGTTCTCTTCC 59.576 38.462 7.85 0.00 42.34 3.46
892 921 6.423905 GGCTTACAAATTTTTGGGTTCTCTTC 59.576 38.462 7.85 0.00 42.34 2.87
893 922 6.288294 GGCTTACAAATTTTTGGGTTCTCTT 58.712 36.000 7.85 0.00 42.34 2.85
894 923 5.221641 GGGCTTACAAATTTTTGGGTTCTCT 60.222 40.000 7.85 0.00 42.34 3.10
918 984 1.392589 GCCACCATATCCAACCACAG 58.607 55.000 0.00 0.00 0.00 3.66
982 1048 3.667282 GCGGGCCTATCTACGCGA 61.667 66.667 15.93 0.00 44.04 5.87
990 1056 3.626924 GGGTCATCGCGGGCCTAT 61.627 66.667 6.13 0.00 0.00 2.57
998 1064 4.451150 TGTCTGCCGGGTCATCGC 62.451 66.667 2.18 0.00 0.00 4.58
1309 1392 5.780793 GTGCCTAGATAGGGATTAGGAAGAA 59.219 44.000 7.99 0.00 45.83 2.52
1325 1414 2.758327 ATCCGTGCCGTGCCTAGA 60.758 61.111 0.00 0.00 0.00 2.43
1326 1415 2.279517 GATCCGTGCCGTGCCTAG 60.280 66.667 0.00 0.00 0.00 3.02
1327 1416 2.758327 AGATCCGTGCCGTGCCTA 60.758 61.111 0.00 0.00 0.00 3.93
1328 1417 4.457496 CAGATCCGTGCCGTGCCT 62.457 66.667 0.00 0.00 0.00 4.75
1329 1418 3.950794 TTCAGATCCGTGCCGTGCC 62.951 63.158 0.00 0.00 0.00 5.01
1331 1420 2.456119 GCTTCAGATCCGTGCCGTG 61.456 63.158 0.00 0.00 0.00 4.94
1332 1421 2.125512 GCTTCAGATCCGTGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
1351 1440 1.680522 CGGATGGAGACCCTGACTGG 61.681 65.000 0.00 0.00 0.00 4.00
1371 1460 1.599047 GCATGGGATCGGATCGGAT 59.401 57.895 15.03 15.03 0.00 4.18
1372 1461 2.931068 CGCATGGGATCGGATCGGA 61.931 63.158 11.62 5.34 0.00 4.55
1373 1462 2.433145 CGCATGGGATCGGATCGG 60.433 66.667 11.62 3.17 0.00 4.18
1374 1463 3.114616 GCGCATGGGATCGGATCG 61.115 66.667 14.90 1.38 0.00 3.69
1375 1464 3.114616 CGCGCATGGGATCGGATC 61.115 66.667 14.90 9.54 0.00 3.36
1446 1561 2.558795 GCAGGATTCAGATCGGCTACTA 59.441 50.000 0.00 0.00 33.20 1.82
1511 1626 4.562757 GGAGTATATCCGGTTATGCTTGCA 60.563 45.833 20.08 0.00 38.67 4.08
1543 1658 8.237267 GCATCCATGTAAAGCTAATTATACACC 58.763 37.037 0.00 0.00 31.65 4.16
1568 1683 2.540361 GCATCAATCACGAGGAACATGC 60.540 50.000 0.00 0.00 32.25 4.06
1615 1734 9.309224 AGACTGCACACACATATATAGGTAATA 57.691 33.333 0.00 0.00 0.00 0.98
1639 1759 0.756294 TTCTCGTTGGCCAGTTGAGA 59.244 50.000 22.53 22.53 34.10 3.27
1641 1761 0.884704 GCTTCTCGTTGGCCAGTTGA 60.885 55.000 5.11 4.38 0.00 3.18
1777 1897 2.807967 CGAGTGTGGAGCAGATTGAAAA 59.192 45.455 0.00 0.00 0.00 2.29
1778 1898 2.416747 CGAGTGTGGAGCAGATTGAAA 58.583 47.619 0.00 0.00 0.00 2.69
1797 1917 1.153939 CTGAGGCTCAAGTCGTCCG 60.154 63.158 19.29 0.00 0.00 4.79
1844 1964 0.961753 GGTTCTTGCCTGGAACAAGG 59.038 55.000 12.31 0.00 43.79 3.61
1886 2009 7.493971 GCTGACAGTTTGACAAGATACTCATAT 59.506 37.037 3.99 0.00 0.00 1.78
1902 2026 5.009010 CAGTTTGAAGGTATGCTGACAGTTT 59.991 40.000 3.99 0.00 0.00 2.66
1935 2059 9.466497 TTTAGCATTCTCTTATCCAAAGATTGT 57.534 29.630 0.00 0.00 33.67 2.71
1966 2090 3.131709 ACAGGAGAATGCCATAATCGG 57.868 47.619 0.00 0.00 0.00 4.18
2029 2155 2.892784 TACCACACACACATGAACGA 57.107 45.000 0.00 0.00 0.00 3.85
2030 2156 5.808030 TGTATATACCACACACACATGAACG 59.192 40.000 10.38 0.00 0.00 3.95
2031 2157 6.238103 GCTGTATATACCACACACACATGAAC 60.238 42.308 10.38 0.00 0.00 3.18
2032 2158 5.815222 GCTGTATATACCACACACACATGAA 59.185 40.000 10.38 0.00 0.00 2.57
2034 2160 5.115480 TGCTGTATATACCACACACACATG 58.885 41.667 10.38 0.00 0.00 3.21
2035 2161 5.351948 TGCTGTATATACCACACACACAT 57.648 39.130 10.38 0.00 0.00 3.21
2067 2208 5.124776 TGTTTCGAACAACCAGAACAATTCT 59.875 36.000 0.00 0.00 38.43 2.40
2082 2223 4.265320 CAGGACTTGCTTTTTGTTTCGAAC 59.735 41.667 0.00 0.00 0.00 3.95
2292 2434 0.597118 TTGCCTCAAATGCGTGCAAC 60.597 50.000 0.00 0.00 37.04 4.17
2293 2435 0.317799 ATTGCCTCAAATGCGTGCAA 59.682 45.000 0.00 3.41 44.96 4.08
2294 2436 0.317799 AATTGCCTCAAATGCGTGCA 59.682 45.000 0.00 0.00 0.00 4.57
2314 2456 2.359900 GGGGACACAGCAAGTCAATAG 58.640 52.381 5.72 0.00 37.74 1.73
2321 2463 2.046892 CTCCGGGGACACAGCAAG 60.047 66.667 0.00 0.00 0.00 4.01
2349 2491 5.526479 CGTCTGTGATTTGGATGATTCTCAT 59.474 40.000 0.00 0.00 40.34 2.90
2368 2510 0.959372 AGTACACCGGAGACCGTCTG 60.959 60.000 9.46 0.00 46.80 3.51
2382 2524 5.867174 CCGTTGTCAATCATAGTGAAGTACA 59.133 40.000 0.00 0.00 0.00 2.90
2405 2547 2.277084 CGGTAGAGGTAAACACATGCC 58.723 52.381 0.00 0.00 0.00 4.40
2412 2554 3.488216 CGTCTAAGGCGGTAGAGGTAAAC 60.488 52.174 10.81 0.00 33.34 2.01
2413 2555 2.684881 CGTCTAAGGCGGTAGAGGTAAA 59.315 50.000 10.81 0.00 33.34 2.01
2414 2556 2.292267 CGTCTAAGGCGGTAGAGGTAA 58.708 52.381 10.81 0.00 33.34 2.85
2415 2557 1.475751 CCGTCTAAGGCGGTAGAGGTA 60.476 57.143 15.21 0.00 43.84 3.08
2416 2558 0.750911 CCGTCTAAGGCGGTAGAGGT 60.751 60.000 15.21 0.00 43.84 3.85
2417 2559 2.031360 CCGTCTAAGGCGGTAGAGG 58.969 63.158 3.98 11.63 43.84 3.69
2424 2566 0.458669 ATACACCACCGTCTAAGGCG 59.541 55.000 0.00 0.00 33.69 5.52
2425 2567 1.479323 TGATACACCACCGTCTAAGGC 59.521 52.381 0.00 0.00 33.69 4.35
2426 2568 3.880047 TTGATACACCACCGTCTAAGG 57.120 47.619 0.00 0.00 37.30 2.69
2427 2569 4.809426 GGATTTGATACACCACCGTCTAAG 59.191 45.833 0.00 0.00 0.00 2.18
2428 2570 4.223255 TGGATTTGATACACCACCGTCTAA 59.777 41.667 0.00 0.00 0.00 2.10
2429 2571 3.770388 TGGATTTGATACACCACCGTCTA 59.230 43.478 0.00 0.00 0.00 2.59
2430 2572 2.569853 TGGATTTGATACACCACCGTCT 59.430 45.455 0.00 0.00 0.00 4.18
2431 2573 2.980568 TGGATTTGATACACCACCGTC 58.019 47.619 0.00 0.00 0.00 4.79
2432 2574 3.278574 CATGGATTTGATACACCACCGT 58.721 45.455 0.00 0.00 35.19 4.83
2433 2575 2.033299 GCATGGATTTGATACACCACCG 59.967 50.000 0.00 0.00 35.19 4.94
2434 2576 3.023119 TGCATGGATTTGATACACCACC 58.977 45.455 0.00 0.00 35.19 4.61
2435 2577 4.924305 ATGCATGGATTTGATACACCAC 57.076 40.909 0.00 0.00 35.19 4.16
2436 2578 5.657745 AGAAATGCATGGATTTGATACACCA 59.342 36.000 27.32 0.00 36.83 4.17
2437 2579 6.152932 AGAAATGCATGGATTTGATACACC 57.847 37.500 27.32 12.39 0.00 4.16
2438 2580 7.259882 TGAAGAAATGCATGGATTTGATACAC 58.740 34.615 27.32 13.04 0.00 2.90
2439 2581 7.407393 TGAAGAAATGCATGGATTTGATACA 57.593 32.000 27.32 17.86 0.00 2.29
2440 2582 8.882415 ATTGAAGAAATGCATGGATTTGATAC 57.118 30.769 27.32 14.03 0.00 2.24
2442 2584 8.148351 CCTATTGAAGAAATGCATGGATTTGAT 58.852 33.333 27.32 16.23 0.00 2.57
2443 2585 7.342541 TCCTATTGAAGAAATGCATGGATTTGA 59.657 33.333 27.32 13.18 0.00 2.69
2444 2586 7.494211 TCCTATTGAAGAAATGCATGGATTTG 58.506 34.615 27.32 11.60 0.00 2.32
2445 2587 7.201974 CCTCCTATTGAAGAAATGCATGGATTT 60.202 37.037 23.31 23.31 0.00 2.17
2446 2588 6.267014 CCTCCTATTGAAGAAATGCATGGATT 59.733 38.462 6.63 6.63 0.00 3.01
2447 2589 5.773680 CCTCCTATTGAAGAAATGCATGGAT 59.226 40.000 0.00 0.00 0.00 3.41
2448 2590 5.135383 CCTCCTATTGAAGAAATGCATGGA 58.865 41.667 0.00 0.00 0.00 3.41
2449 2591 4.891756 ACCTCCTATTGAAGAAATGCATGG 59.108 41.667 0.00 0.00 0.00 3.66
2450 2592 7.284034 ACTTACCTCCTATTGAAGAAATGCATG 59.716 37.037 0.00 0.00 0.00 4.06
2451 2593 7.349598 ACTTACCTCCTATTGAAGAAATGCAT 58.650 34.615 0.00 0.00 0.00 3.96
2452 2594 6.721318 ACTTACCTCCTATTGAAGAAATGCA 58.279 36.000 0.00 0.00 0.00 3.96
2453 2595 7.631717 AACTTACCTCCTATTGAAGAAATGC 57.368 36.000 0.00 0.00 0.00 3.56
2456 2598 9.635404 TCAAAAACTTACCTCCTATTGAAGAAA 57.365 29.630 0.00 0.00 0.00 2.52
2457 2599 9.063615 GTCAAAAACTTACCTCCTATTGAAGAA 57.936 33.333 0.00 0.00 0.00 2.52
2458 2600 8.215050 TGTCAAAAACTTACCTCCTATTGAAGA 58.785 33.333 0.00 0.00 0.00 2.87
2459 2601 8.391075 TGTCAAAAACTTACCTCCTATTGAAG 57.609 34.615 0.00 0.00 0.00 3.02
2460 2602 8.934023 ATGTCAAAAACTTACCTCCTATTGAA 57.066 30.769 0.00 0.00 0.00 2.69
2461 2603 8.383175 AGATGTCAAAAACTTACCTCCTATTGA 58.617 33.333 0.00 0.00 0.00 2.57
2462 2604 8.567285 AGATGTCAAAAACTTACCTCCTATTG 57.433 34.615 0.00 0.00 0.00 1.90
2463 2605 9.232473 GAAGATGTCAAAAACTTACCTCCTATT 57.768 33.333 0.00 0.00 0.00 1.73
2464 2606 8.383175 TGAAGATGTCAAAAACTTACCTCCTAT 58.617 33.333 0.00 0.00 31.51 2.57
2465 2607 7.741785 TGAAGATGTCAAAAACTTACCTCCTA 58.258 34.615 0.00 0.00 31.51 2.94
2466 2608 6.601332 TGAAGATGTCAAAAACTTACCTCCT 58.399 36.000 0.00 0.00 31.51 3.69
2467 2609 6.568653 GCTGAAGATGTCAAAAACTTACCTCC 60.569 42.308 0.00 0.00 35.22 4.30
2468 2610 6.205658 AGCTGAAGATGTCAAAAACTTACCTC 59.794 38.462 0.00 0.00 35.22 3.85
2469 2611 6.064717 AGCTGAAGATGTCAAAAACTTACCT 58.935 36.000 0.00 0.00 35.22 3.08
2470 2612 6.319141 AGCTGAAGATGTCAAAAACTTACC 57.681 37.500 0.00 0.00 35.22 2.85
2471 2613 9.387123 CTAAAGCTGAAGATGTCAAAAACTTAC 57.613 33.333 0.00 0.00 35.22 2.34
2472 2614 9.120538 ACTAAAGCTGAAGATGTCAAAAACTTA 57.879 29.630 2.72 0.00 35.22 2.24
2473 2615 8.000780 ACTAAAGCTGAAGATGTCAAAAACTT 57.999 30.769 2.72 0.00 35.22 2.66
2474 2616 7.573968 ACTAAAGCTGAAGATGTCAAAAACT 57.426 32.000 2.72 0.00 35.22 2.66
2475 2617 7.803659 GGTACTAAAGCTGAAGATGTCAAAAAC 59.196 37.037 2.72 0.00 35.22 2.43
2476 2618 7.719633 AGGTACTAAAGCTGAAGATGTCAAAAA 59.280 33.333 2.72 0.00 36.02 1.94
2477 2619 7.224297 AGGTACTAAAGCTGAAGATGTCAAAA 58.776 34.615 2.72 0.00 36.02 2.44
2478 2620 6.769512 AGGTACTAAAGCTGAAGATGTCAAA 58.230 36.000 2.72 0.00 36.02 2.69
2479 2621 6.360370 AGGTACTAAAGCTGAAGATGTCAA 57.640 37.500 2.72 0.00 36.02 3.18
2480 2622 6.360370 AAGGTACTAAAGCTGAAGATGTCA 57.640 37.500 2.72 0.00 38.49 3.58
2481 2623 7.674471 AAAAGGTACTAAAGCTGAAGATGTC 57.326 36.000 2.72 0.00 38.49 3.06
2503 2645 5.048083 AGGCAGCGAAATGTATGAAGAAAAA 60.048 36.000 0.00 0.00 0.00 1.94
2504 2646 4.458989 AGGCAGCGAAATGTATGAAGAAAA 59.541 37.500 0.00 0.00 0.00 2.29
2505 2647 4.009675 AGGCAGCGAAATGTATGAAGAAA 58.990 39.130 0.00 0.00 0.00 2.52
2506 2648 3.609853 AGGCAGCGAAATGTATGAAGAA 58.390 40.909 0.00 0.00 0.00 2.52
2507 2649 3.118629 AGAGGCAGCGAAATGTATGAAGA 60.119 43.478 0.00 0.00 0.00 2.87
2508 2650 3.201290 AGAGGCAGCGAAATGTATGAAG 58.799 45.455 0.00 0.00 0.00 3.02
2509 2651 3.266510 AGAGGCAGCGAAATGTATGAA 57.733 42.857 0.00 0.00 0.00 2.57
2510 2652 2.938451 CAAGAGGCAGCGAAATGTATGA 59.062 45.455 0.00 0.00 0.00 2.15
2511 2653 2.540361 GCAAGAGGCAGCGAAATGTATG 60.540 50.000 0.00 0.00 43.97 2.39
2512 2654 1.672881 GCAAGAGGCAGCGAAATGTAT 59.327 47.619 0.00 0.00 43.97 2.29
2513 2655 1.086696 GCAAGAGGCAGCGAAATGTA 58.913 50.000 0.00 0.00 43.97 2.29
2514 2656 1.878775 GCAAGAGGCAGCGAAATGT 59.121 52.632 0.00 0.00 43.97 2.71
2515 2657 4.779819 GCAAGAGGCAGCGAAATG 57.220 55.556 0.00 0.00 43.97 2.32
2524 2666 3.137533 GTCCAGAAGATATGCAAGAGGC 58.862 50.000 0.00 0.00 45.13 4.70
2525 2667 4.686191 AGTCCAGAAGATATGCAAGAGG 57.314 45.455 0.00 0.00 0.00 3.69
2526 2668 7.048629 TCTTAGTCCAGAAGATATGCAAGAG 57.951 40.000 0.00 0.00 0.00 2.85
2527 2669 7.609097 ATCTTAGTCCAGAAGATATGCAAGA 57.391 36.000 0.00 0.00 40.96 3.02
2536 2678 9.756571 GGGTATCTTATATCTTAGTCCAGAAGA 57.243 37.037 0.00 0.00 37.34 2.87
2537 2679 8.973182 GGGGTATCTTATATCTTAGTCCAGAAG 58.027 40.741 0.00 0.00 0.00 2.85
2538 2680 8.689054 AGGGGTATCTTATATCTTAGTCCAGAA 58.311 37.037 0.00 0.00 0.00 3.02
2539 2681 8.245929 AGGGGTATCTTATATCTTAGTCCAGA 57.754 38.462 0.00 0.00 0.00 3.86
2540 2682 8.340757 AGAGGGGTATCTTATATCTTAGTCCAG 58.659 40.741 0.00 0.00 0.00 3.86
2541 2683 8.245929 AGAGGGGTATCTTATATCTTAGTCCA 57.754 38.462 0.00 0.00 0.00 4.02
2542 2684 9.192642 GAAGAGGGGTATCTTATATCTTAGTCC 57.807 40.741 0.00 0.00 39.63 3.85
2543 2685 9.984590 AGAAGAGGGGTATCTTATATCTTAGTC 57.015 37.037 0.00 0.00 39.63 2.59
2546 2688 9.463902 CGAAGAAGAGGGGTATCTTATATCTTA 57.536 37.037 0.00 0.00 39.63 2.10
2547 2689 7.397761 CCGAAGAAGAGGGGTATCTTATATCTT 59.602 40.741 0.00 0.00 39.63 2.40
2548 2690 6.893005 CCGAAGAAGAGGGGTATCTTATATCT 59.107 42.308 0.00 0.00 39.63 1.98
2549 2691 6.890814 TCCGAAGAAGAGGGGTATCTTATATC 59.109 42.308 0.00 0.00 39.63 1.63
2550 2692 6.801953 TCCGAAGAAGAGGGGTATCTTATAT 58.198 40.000 0.00 0.00 39.63 0.86
2551 2693 6.183361 ACTCCGAAGAAGAGGGGTATCTTATA 60.183 42.308 0.00 0.00 39.63 0.98
2552 2694 5.076057 TCCGAAGAAGAGGGGTATCTTAT 57.924 43.478 0.00 0.00 39.63 1.73
2553 2695 4.079327 ACTCCGAAGAAGAGGGGTATCTTA 60.079 45.833 0.00 0.00 39.63 2.10
2554 2696 3.301274 CTCCGAAGAAGAGGGGTATCTT 58.699 50.000 0.00 0.00 42.23 2.40
2555 2697 2.245287 ACTCCGAAGAAGAGGGGTATCT 59.755 50.000 0.00 0.00 0.00 1.98
2556 2698 2.362717 CACTCCGAAGAAGAGGGGTATC 59.637 54.545 0.00 0.00 0.00 2.24
2557 2699 2.389715 CACTCCGAAGAAGAGGGGTAT 58.610 52.381 0.00 0.00 0.00 2.73
2558 2700 1.618888 CCACTCCGAAGAAGAGGGGTA 60.619 57.143 0.70 0.00 0.00 3.69
2559 2701 0.905337 CCACTCCGAAGAAGAGGGGT 60.905 60.000 0.70 0.00 0.00 4.95
2560 2702 1.617947 CCCACTCCGAAGAAGAGGGG 61.618 65.000 1.91 1.91 0.00 4.79
2561 2703 0.905337 ACCCACTCCGAAGAAGAGGG 60.905 60.000 4.35 4.35 40.66 4.30
2562 2704 0.977395 AACCCACTCCGAAGAAGAGG 59.023 55.000 0.00 0.00 0.00 3.69
2563 2705 2.841442 AAACCCACTCCGAAGAAGAG 57.159 50.000 0.00 0.00 0.00 2.85
2564 2706 2.565834 CCTAAACCCACTCCGAAGAAGA 59.434 50.000 0.00 0.00 0.00 2.87
2565 2707 2.565834 TCCTAAACCCACTCCGAAGAAG 59.434 50.000 0.00 0.00 0.00 2.85
2566 2708 2.565834 CTCCTAAACCCACTCCGAAGAA 59.434 50.000 0.00 0.00 0.00 2.52
2567 2709 2.176889 CTCCTAAACCCACTCCGAAGA 58.823 52.381 0.00 0.00 0.00 2.87
2568 2710 1.207329 CCTCCTAAACCCACTCCGAAG 59.793 57.143 0.00 0.00 0.00 3.79
2569 2711 1.272807 CCTCCTAAACCCACTCCGAA 58.727 55.000 0.00 0.00 0.00 4.30
2570 2712 0.115745 ACCTCCTAAACCCACTCCGA 59.884 55.000 0.00 0.00 0.00 4.55
2571 2713 0.249398 CACCTCCTAAACCCACTCCG 59.751 60.000 0.00 0.00 0.00 4.63
2572 2714 1.652947 TCACCTCCTAAACCCACTCC 58.347 55.000 0.00 0.00 0.00 3.85
2573 2715 3.263425 TGAATCACCTCCTAAACCCACTC 59.737 47.826 0.00 0.00 0.00 3.51
2574 2716 3.256704 TGAATCACCTCCTAAACCCACT 58.743 45.455 0.00 0.00 0.00 4.00
2575 2717 3.610911 CTGAATCACCTCCTAAACCCAC 58.389 50.000 0.00 0.00 0.00 4.61
2576 2718 2.576191 CCTGAATCACCTCCTAAACCCA 59.424 50.000 0.00 0.00 0.00 4.51
2577 2719 2.844348 TCCTGAATCACCTCCTAAACCC 59.156 50.000 0.00 0.00 0.00 4.11
2578 2720 4.225267 TCTTCCTGAATCACCTCCTAAACC 59.775 45.833 0.00 0.00 0.00 3.27
2579 2721 5.046231 ACTCTTCCTGAATCACCTCCTAAAC 60.046 44.000 0.00 0.00 0.00 2.01
2580 2722 5.094387 ACTCTTCCTGAATCACCTCCTAAA 58.906 41.667 0.00 0.00 0.00 1.85
2581 2723 4.689062 ACTCTTCCTGAATCACCTCCTAA 58.311 43.478 0.00 0.00 0.00 2.69
2582 2724 4.282496 GACTCTTCCTGAATCACCTCCTA 58.718 47.826 0.00 0.00 0.00 2.94
2583 2725 3.103742 GACTCTTCCTGAATCACCTCCT 58.896 50.000 0.00 0.00 0.00 3.69
2584 2726 2.169561 GGACTCTTCCTGAATCACCTCC 59.830 54.545 0.00 0.00 39.13 4.30
2585 2727 2.834549 TGGACTCTTCCTGAATCACCTC 59.165 50.000 0.00 0.00 43.31 3.85
2586 2728 2.907892 TGGACTCTTCCTGAATCACCT 58.092 47.619 0.00 0.00 43.31 4.00
2587 2729 3.703001 TTGGACTCTTCCTGAATCACC 57.297 47.619 0.00 0.00 43.31 4.02
2588 2730 7.050377 TGATAATTGGACTCTTCCTGAATCAC 58.950 38.462 0.00 0.00 43.31 3.06
2589 2731 7.199167 TGATAATTGGACTCTTCCTGAATCA 57.801 36.000 0.00 0.00 43.31 2.57
2590 2732 9.784531 TTATGATAATTGGACTCTTCCTGAATC 57.215 33.333 0.00 0.00 43.31 2.52
2627 2769 9.646522 ACAAGCTAAGGAATTATTGGATAACAT 57.353 29.630 0.00 0.00 0.00 2.71
2628 2770 9.474313 AACAAGCTAAGGAATTATTGGATAACA 57.526 29.630 0.00 0.00 0.00 2.41
2629 2771 9.952188 GAACAAGCTAAGGAATTATTGGATAAC 57.048 33.333 0.00 0.00 0.00 1.89
2630 2772 9.693739 TGAACAAGCTAAGGAATTATTGGATAA 57.306 29.630 0.00 0.00 0.00 1.75
2631 2773 9.693739 TTGAACAAGCTAAGGAATTATTGGATA 57.306 29.630 0.00 0.00 0.00 2.59
2632 2774 8.470002 GTTGAACAAGCTAAGGAATTATTGGAT 58.530 33.333 0.00 0.00 0.00 3.41
2633 2775 7.361713 CGTTGAACAAGCTAAGGAATTATTGGA 60.362 37.037 0.00 0.00 0.00 3.53
2634 2776 6.747280 CGTTGAACAAGCTAAGGAATTATTGG 59.253 38.462 0.00 0.00 0.00 3.16
2635 2777 6.747280 CCGTTGAACAAGCTAAGGAATTATTG 59.253 38.462 0.00 0.00 0.00 1.90
2636 2778 6.433093 ACCGTTGAACAAGCTAAGGAATTATT 59.567 34.615 0.00 0.00 0.00 1.40
2637 2779 5.944007 ACCGTTGAACAAGCTAAGGAATTAT 59.056 36.000 0.00 0.00 0.00 1.28
2638 2780 5.310451 ACCGTTGAACAAGCTAAGGAATTA 58.690 37.500 0.00 0.00 0.00 1.40
2639 2781 4.142038 ACCGTTGAACAAGCTAAGGAATT 58.858 39.130 0.00 0.00 0.00 2.17
2640 2782 3.751518 ACCGTTGAACAAGCTAAGGAAT 58.248 40.909 0.00 0.00 0.00 3.01
2641 2783 3.202829 ACCGTTGAACAAGCTAAGGAA 57.797 42.857 0.00 0.00 0.00 3.36
2642 2784 2.922740 ACCGTTGAACAAGCTAAGGA 57.077 45.000 0.00 0.00 0.00 3.36
2643 2785 2.096417 CGAACCGTTGAACAAGCTAAGG 60.096 50.000 0.00 0.00 0.00 2.69
2644 2786 2.542595 ACGAACCGTTGAACAAGCTAAG 59.457 45.455 0.00 0.00 36.35 2.18
2645 2787 2.553086 ACGAACCGTTGAACAAGCTAA 58.447 42.857 0.00 0.00 36.35 3.09
2646 2788 2.228138 ACGAACCGTTGAACAAGCTA 57.772 45.000 0.00 0.00 36.35 3.32
2647 2789 3.074594 ACGAACCGTTGAACAAGCT 57.925 47.368 0.00 0.00 36.35 3.74
2657 2799 2.096335 GTGTTTTCAAGGAACGAACCGT 59.904 45.455 0.00 0.00 43.97 4.83
2658 2800 2.096174 TGTGTTTTCAAGGAACGAACCG 59.904 45.455 0.00 0.00 34.73 4.44
2659 2801 3.768468 TGTGTTTTCAAGGAACGAACC 57.232 42.857 0.00 0.00 0.00 3.62
2660 2802 3.855379 GGTTGTGTTTTCAAGGAACGAAC 59.145 43.478 0.00 0.00 0.00 3.95
2661 2803 3.506455 TGGTTGTGTTTTCAAGGAACGAA 59.494 39.130 0.00 0.00 0.00 3.85
2662 2804 3.082548 TGGTTGTGTTTTCAAGGAACGA 58.917 40.909 0.00 0.00 0.00 3.85
2663 2805 3.434637 CTGGTTGTGTTTTCAAGGAACG 58.565 45.455 0.00 0.00 0.00 3.95
2664 2806 3.186909 GCTGGTTGTGTTTTCAAGGAAC 58.813 45.455 0.00 0.00 0.00 3.62
2665 2807 2.828520 TGCTGGTTGTGTTTTCAAGGAA 59.171 40.909 0.00 0.00 0.00 3.36
2666 2808 2.165437 GTGCTGGTTGTGTTTTCAAGGA 59.835 45.455 0.00 0.00 0.00 3.36
2667 2809 2.094286 TGTGCTGGTTGTGTTTTCAAGG 60.094 45.455 0.00 0.00 0.00 3.61
2668 2810 3.229276 TGTGCTGGTTGTGTTTTCAAG 57.771 42.857 0.00 0.00 0.00 3.02
2669 2811 3.006323 AGTTGTGCTGGTTGTGTTTTCAA 59.994 39.130 0.00 0.00 0.00 2.69
2670 2812 2.560542 AGTTGTGCTGGTTGTGTTTTCA 59.439 40.909 0.00 0.00 0.00 2.69
2671 2813 3.230743 AGTTGTGCTGGTTGTGTTTTC 57.769 42.857 0.00 0.00 0.00 2.29
2672 2814 4.644685 AGATAGTTGTGCTGGTTGTGTTTT 59.355 37.500 0.00 0.00 0.00 2.43
2673 2815 4.207165 AGATAGTTGTGCTGGTTGTGTTT 58.793 39.130 0.00 0.00 0.00 2.83
2674 2816 3.820557 AGATAGTTGTGCTGGTTGTGTT 58.179 40.909 0.00 0.00 0.00 3.32
2675 2817 3.492102 AGATAGTTGTGCTGGTTGTGT 57.508 42.857 0.00 0.00 0.00 3.72
2676 2818 3.935203 CCTAGATAGTTGTGCTGGTTGTG 59.065 47.826 0.00 0.00 0.00 3.33
2677 2819 3.838317 TCCTAGATAGTTGTGCTGGTTGT 59.162 43.478 0.00 0.00 0.00 3.32
2678 2820 4.471904 TCCTAGATAGTTGTGCTGGTTG 57.528 45.455 0.00 0.00 0.00 3.77
2679 2821 5.499004 TTTCCTAGATAGTTGTGCTGGTT 57.501 39.130 0.00 0.00 0.00 3.67
2680 2822 5.396884 GGATTTCCTAGATAGTTGTGCTGGT 60.397 44.000 0.00 0.00 0.00 4.00
2681 2823 5.059833 GGATTTCCTAGATAGTTGTGCTGG 58.940 45.833 0.00 0.00 0.00 4.85
2682 2824 5.923204 AGGATTTCCTAGATAGTTGTGCTG 58.077 41.667 0.00 0.00 46.48 4.41
2697 2839 8.056407 ACTAACTGATGCTTTTAAGGATTTCC 57.944 34.615 0.00 0.00 37.20 3.13
2698 2840 8.184848 GGACTAACTGATGCTTTTAAGGATTTC 58.815 37.037 0.00 0.00 37.20 2.17
2699 2841 7.669722 TGGACTAACTGATGCTTTTAAGGATTT 59.330 33.333 0.00 0.00 37.20 2.17
2700 2842 7.175104 TGGACTAACTGATGCTTTTAAGGATT 58.825 34.615 0.00 0.00 37.20 3.01
2701 2843 6.721318 TGGACTAACTGATGCTTTTAAGGAT 58.279 36.000 0.00 0.00 39.97 3.24
2702 2844 6.121776 TGGACTAACTGATGCTTTTAAGGA 57.878 37.500 0.00 0.00 0.00 3.36
2703 2845 7.396540 AATGGACTAACTGATGCTTTTAAGG 57.603 36.000 0.00 0.00 0.00 2.69
2707 2849 9.905713 TTCTATAATGGACTAACTGATGCTTTT 57.094 29.630 0.00 0.00 0.00 2.27
2708 2850 9.553064 CTTCTATAATGGACTAACTGATGCTTT 57.447 33.333 0.00 0.00 0.00 3.51
2709 2851 8.928448 TCTTCTATAATGGACTAACTGATGCTT 58.072 33.333 0.00 0.00 0.00 3.91
2710 2852 8.484214 TCTTCTATAATGGACTAACTGATGCT 57.516 34.615 0.00 0.00 0.00 3.79
2968 3110 5.401674 GCTTTGTGCAAATTGAAGAAGAGAG 59.598 40.000 0.00 0.00 42.31 3.20
2969 3111 5.068198 AGCTTTGTGCAAATTGAAGAAGAGA 59.932 36.000 0.00 0.00 45.94 3.10
2970 3112 5.287226 AGCTTTGTGCAAATTGAAGAAGAG 58.713 37.500 0.00 0.00 45.94 2.85
2971 3113 5.266733 AGCTTTGTGCAAATTGAAGAAGA 57.733 34.783 0.00 0.00 45.94 2.87
2972 3114 7.467557 TTTAGCTTTGTGCAAATTGAAGAAG 57.532 32.000 0.00 0.00 45.94 2.85
2973 3115 9.709495 ATATTTAGCTTTGTGCAAATTGAAGAA 57.291 25.926 0.00 0.00 45.94 2.52
2974 3116 9.709495 AATATTTAGCTTTGTGCAAATTGAAGA 57.291 25.926 0.00 0.00 45.94 2.87
2977 3119 8.934825 GGAAATATTTAGCTTTGTGCAAATTGA 58.065 29.630 0.00 0.00 45.94 2.57
2978 3120 8.938906 AGGAAATATTTAGCTTTGTGCAAATTG 58.061 29.630 0.00 0.00 45.94 2.32
2979 3121 8.938906 CAGGAAATATTTAGCTTTGTGCAAATT 58.061 29.630 0.00 0.00 45.94 1.82
2980 3122 8.096414 ACAGGAAATATTTAGCTTTGTGCAAAT 58.904 29.630 0.00 0.00 45.94 2.32
2981 3123 7.441017 ACAGGAAATATTTAGCTTTGTGCAAA 58.559 30.769 0.00 0.00 45.94 3.68
2982 3124 6.991938 ACAGGAAATATTTAGCTTTGTGCAA 58.008 32.000 0.00 0.00 45.94 4.08
2983 3125 6.588719 ACAGGAAATATTTAGCTTTGTGCA 57.411 33.333 0.00 0.00 45.94 4.57
2984 3126 7.702348 CCTTACAGGAAATATTTAGCTTTGTGC 59.298 37.037 0.00 0.00 37.67 4.57
2985 3127 7.702348 GCCTTACAGGAAATATTTAGCTTTGTG 59.298 37.037 0.00 0.00 37.67 3.33
2986 3128 7.396055 TGCCTTACAGGAAATATTTAGCTTTGT 59.604 33.333 0.00 4.64 37.67 2.83
2987 3129 7.771183 TGCCTTACAGGAAATATTTAGCTTTG 58.229 34.615 0.00 0.00 37.67 2.77
2988 3130 7.954666 TGCCTTACAGGAAATATTTAGCTTT 57.045 32.000 0.00 0.00 37.67 3.51
2989 3131 7.573968 CTGCCTTACAGGAAATATTTAGCTT 57.426 36.000 0.00 0.00 43.19 3.74
3004 3146 5.239351 TCGTAATAAACAAGCTGCCTTACA 58.761 37.500 0.00 0.00 0.00 2.41
3005 3147 5.726963 GCTCGTAATAAACAAGCTGCCTTAC 60.727 44.000 0.00 0.00 0.00 2.34
3006 3148 4.331717 GCTCGTAATAAACAAGCTGCCTTA 59.668 41.667 0.00 0.00 0.00 2.69
3007 3149 3.127030 GCTCGTAATAAACAAGCTGCCTT 59.873 43.478 0.00 0.00 0.00 4.35
3008 3150 2.678336 GCTCGTAATAAACAAGCTGCCT 59.322 45.455 0.00 0.00 0.00 4.75
3009 3151 2.418628 TGCTCGTAATAAACAAGCTGCC 59.581 45.455 0.00 0.00 0.00 4.85
3010 3152 3.485877 CCTGCTCGTAATAAACAAGCTGC 60.486 47.826 0.00 0.00 0.00 5.25
3011 3153 3.063997 CCCTGCTCGTAATAAACAAGCTG 59.936 47.826 0.00 0.00 0.00 4.24
3012 3154 3.055385 TCCCTGCTCGTAATAAACAAGCT 60.055 43.478 0.00 0.00 0.00 3.74
3013 3155 3.267483 TCCCTGCTCGTAATAAACAAGC 58.733 45.455 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.