Multiple sequence alignment - TraesCS6A01G206200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G206200 chr6A 100.000 2444 0 0 1 2444 363514630 363512187 0.000000e+00 4514.0
1 TraesCS6A01G206200 chr6A 98.438 128 2 0 261 388 363514309 363514182 2.450000e-55 226.0
2 TraesCS6A01G206200 chr6A 98.438 128 2 0 322 449 363514370 363514243 2.450000e-55 226.0
3 TraesCS6A01G206200 chr6A 97.015 67 2 0 383 449 363514370 363514304 1.990000e-21 113.0
4 TraesCS6A01G206200 chr4D 80.837 1529 76 83 605 2017 484397470 484398897 0.000000e+00 1000.0
5 TraesCS6A01G206200 chr4D 86.698 421 25 10 2050 2439 484398902 484399322 2.890000e-119 438.0
6 TraesCS6A01G206200 chr4D 97.115 104 2 1 188 290 484397251 484397354 8.980000e-40 174.0
7 TraesCS6A01G206200 chr4D 81.657 169 24 5 2081 2248 484398509 484398671 1.520000e-27 134.0
8 TraesCS6A01G206200 chr5A 90.370 540 23 11 1000 1510 664803614 664804153 0.000000e+00 682.0
9 TraesCS6A01G206200 chr5A 79.657 467 37 19 1996 2441 664804644 664805073 1.430000e-72 283.0
10 TraesCS6A01G206200 chr5A 92.199 141 10 1 159 299 664803248 664803387 5.330000e-47 198.0
11 TraesCS6A01G206200 chr5A 86.076 158 15 1 1513 1663 664804188 664804345 1.940000e-36 163.0
12 TraesCS6A01G206200 chr7B 97.000 100 1 2 198 297 222691777 222691680 1.500000e-37 167.0
13 TraesCS6A01G206200 chr7B 95.192 104 4 1 199 302 706855067 706854965 1.940000e-36 163.0
14 TraesCS6A01G206200 chr7A 96.117 103 1 3 198 297 262856254 262856152 5.410000e-37 165.0
15 TraesCS6A01G206200 chr7A 93.578 109 5 2 199 306 706904163 706904056 6.990000e-36 161.0
16 TraesCS6A01G206200 chr1D 95.238 105 4 1 199 303 300067088 300067191 5.410000e-37 165.0
17 TraesCS6A01G206200 chr2D 96.040 101 3 1 198 298 118234029 118233930 1.940000e-36 163.0
18 TraesCS6A01G206200 chr2A 92.308 117 5 4 198 313 120049848 120049735 1.940000e-36 163.0
19 TraesCS6A01G206200 chr6B 100.000 28 0 0 15 42 545275768 545275795 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G206200 chr6A 363512187 363514630 2443 True 1269.75 4514 98.47275 1 2444 4 chr6A.!!$R1 2443
1 TraesCS6A01G206200 chr4D 484397251 484399322 2071 False 436.50 1000 86.57675 188 2439 4 chr4D.!!$F1 2251
2 TraesCS6A01G206200 chr5A 664803248 664805073 1825 False 331.50 682 87.07550 159 2441 4 chr5A.!!$F1 2282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.026285 CCGCCGAATAGTTTCTTGCG 59.974 55.0 10.54 10.54 43.99 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2086 0.035534 TAGGGTGAATGCATGTGCGT 60.036 50.0 0.0 0.0 45.83 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.485394 AGTTTATGCACCATGTGACACA 58.515 40.909 11.41 11.41 35.23 3.72
22 23 3.253188 AGTTTATGCACCATGTGACACAC 59.747 43.478 11.22 1.42 35.23 3.82
32 33 2.629336 TGTGACACACATGGTAAGCA 57.371 45.000 3.56 0.00 39.62 3.91
33 34 2.924421 TGTGACACACATGGTAAGCAA 58.076 42.857 3.56 0.00 39.62 3.91
34 35 3.485394 TGTGACACACATGGTAAGCAAT 58.515 40.909 3.56 0.00 39.62 3.56
35 36 3.501828 TGTGACACACATGGTAAGCAATC 59.498 43.478 3.56 0.00 39.62 2.67
36 37 3.081061 TGACACACATGGTAAGCAATCC 58.919 45.455 0.00 0.00 0.00 3.01
37 38 3.081061 GACACACATGGTAAGCAATCCA 58.919 45.455 0.00 0.00 38.14 3.41
38 39 3.495331 ACACACATGGTAAGCAATCCAA 58.505 40.909 0.00 0.00 37.27 3.53
39 40 3.894427 ACACACATGGTAAGCAATCCAAA 59.106 39.130 0.00 0.00 37.27 3.28
40 41 4.236935 CACACATGGTAAGCAATCCAAAC 58.763 43.478 0.00 0.00 37.27 2.93
41 42 3.894427 ACACATGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 37.27 2.83
42 43 4.527816 ACACATGGTAAGCAATCCAAACAT 59.472 37.500 0.00 0.00 37.27 2.71
43 44 5.011943 ACACATGGTAAGCAATCCAAACATT 59.988 36.000 0.00 0.00 37.27 2.71
44 45 5.933463 CACATGGTAAGCAATCCAAACATTT 59.067 36.000 0.00 0.00 37.27 2.32
45 46 6.091169 CACATGGTAAGCAATCCAAACATTTC 59.909 38.462 0.00 0.00 37.27 2.17
46 47 5.798125 TGGTAAGCAATCCAAACATTTCA 57.202 34.783 0.00 0.00 0.00 2.69
47 48 5.782047 TGGTAAGCAATCCAAACATTTCAG 58.218 37.500 0.00 0.00 0.00 3.02
48 49 5.538053 TGGTAAGCAATCCAAACATTTCAGA 59.462 36.000 0.00 0.00 0.00 3.27
49 50 6.041409 TGGTAAGCAATCCAAACATTTCAGAA 59.959 34.615 0.00 0.00 0.00 3.02
50 51 6.928492 GGTAAGCAATCCAAACATTTCAGAAA 59.072 34.615 0.00 0.00 0.00 2.52
51 52 7.603784 GGTAAGCAATCCAAACATTTCAGAAAT 59.396 33.333 2.20 2.20 0.00 2.17
52 53 9.638239 GTAAGCAATCCAAACATTTCAGAAATA 57.362 29.630 8.12 0.00 0.00 1.40
53 54 8.767478 AAGCAATCCAAACATTTCAGAAATAG 57.233 30.769 8.12 6.03 0.00 1.73
54 55 7.899973 AGCAATCCAAACATTTCAGAAATAGT 58.100 30.769 8.12 6.61 0.00 2.12
55 56 8.370182 AGCAATCCAAACATTTCAGAAATAGTT 58.630 29.630 8.12 11.54 0.00 2.24
56 57 8.992073 GCAATCCAAACATTTCAGAAATAGTTT 58.008 29.630 19.89 19.89 35.00 2.66
59 60 8.364129 TCCAAACATTTCAGAAATAGTTTTGC 57.636 30.769 21.52 0.00 33.74 3.68
60 61 7.168972 TCCAAACATTTCAGAAATAGTTTTGCG 59.831 33.333 21.52 16.62 33.74 4.85
61 62 6.452244 AACATTTCAGAAATAGTTTTGCGC 57.548 33.333 8.12 0.00 0.00 6.09
62 63 5.527951 ACATTTCAGAAATAGTTTTGCGCA 58.472 33.333 5.66 5.66 0.00 6.09
63 64 6.158598 ACATTTCAGAAATAGTTTTGCGCAT 58.841 32.000 12.75 0.00 0.00 4.73
64 65 6.308766 ACATTTCAGAAATAGTTTTGCGCATC 59.691 34.615 12.75 2.43 0.00 3.91
65 66 5.369685 TTCAGAAATAGTTTTGCGCATCA 57.630 34.783 12.75 0.00 0.00 3.07
66 67 4.973396 TCAGAAATAGTTTTGCGCATCAG 58.027 39.130 12.75 0.00 0.00 2.90
67 68 3.545078 CAGAAATAGTTTTGCGCATCAGC 59.455 43.478 12.75 2.95 37.71 4.26
68 69 3.441572 AGAAATAGTTTTGCGCATCAGCT 59.558 39.130 12.75 11.38 39.10 4.24
69 70 4.635765 AGAAATAGTTTTGCGCATCAGCTA 59.364 37.500 12.75 13.35 39.10 3.32
70 71 4.542662 AATAGTTTTGCGCATCAGCTAG 57.457 40.909 12.75 0.00 39.10 3.42
71 72 0.449388 AGTTTTGCGCATCAGCTAGC 59.551 50.000 12.75 6.62 39.10 3.42
77 78 4.290793 GCATCAGCTAGCGTGCGC 62.291 66.667 21.12 14.40 38.54 6.09
78 79 3.634072 CATCAGCTAGCGTGCGCC 61.634 66.667 13.21 0.00 43.17 6.53
79 80 4.899239 ATCAGCTAGCGTGCGCCC 62.899 66.667 13.21 0.00 43.17 6.13
90 91 4.460683 TGCGCCCGCCGAATAGTT 62.461 61.111 4.18 0.00 41.09 2.24
91 92 3.199891 GCGCCCGCCGAATAGTTT 61.200 61.111 0.00 0.00 40.02 2.66
92 93 3.011583 CGCCCGCCGAATAGTTTC 58.988 61.111 0.00 0.00 40.02 2.78
93 94 1.520787 CGCCCGCCGAATAGTTTCT 60.521 57.895 0.00 0.00 40.02 2.52
94 95 1.087771 CGCCCGCCGAATAGTTTCTT 61.088 55.000 0.00 0.00 40.02 2.52
95 96 0.377203 GCCCGCCGAATAGTTTCTTG 59.623 55.000 0.00 0.00 0.00 3.02
96 97 0.377203 CCCGCCGAATAGTTTCTTGC 59.623 55.000 0.00 0.00 0.00 4.01
97 98 0.026285 CCGCCGAATAGTTTCTTGCG 59.974 55.000 10.54 10.54 43.99 4.85
98 99 0.586502 CGCCGAATAGTTTCTTGCGC 60.587 55.000 0.00 0.00 40.95 6.09
99 100 0.586502 GCCGAATAGTTTCTTGCGCG 60.587 55.000 0.00 0.00 0.00 6.86
100 101 0.586502 CCGAATAGTTTCTTGCGCGC 60.587 55.000 27.26 27.26 0.00 6.86
101 102 0.094558 CGAATAGTTTCTTGCGCGCA 59.905 50.000 33.09 33.09 0.00 6.09
102 103 1.524548 GAATAGTTTCTTGCGCGCAC 58.475 50.000 36.72 22.40 0.00 5.34
103 104 0.168128 AATAGTTTCTTGCGCGCACC 59.832 50.000 36.72 18.69 0.00 5.01
104 105 0.953471 ATAGTTTCTTGCGCGCACCA 60.953 50.000 36.72 20.98 0.00 4.17
105 106 0.953471 TAGTTTCTTGCGCGCACCAT 60.953 50.000 36.72 18.54 0.00 3.55
106 107 2.082366 GTTTCTTGCGCGCACCATG 61.082 57.895 36.72 23.07 0.00 3.66
107 108 3.895102 TTTCTTGCGCGCACCATGC 62.895 57.895 36.72 0.76 40.69 4.06
112 113 4.536687 GCGCGCACCATGCCTAAC 62.537 66.667 29.10 0.00 41.12 2.34
113 114 2.819595 CGCGCACCATGCCTAACT 60.820 61.111 8.75 0.00 41.12 2.24
114 115 2.398554 CGCGCACCATGCCTAACTT 61.399 57.895 8.75 0.00 41.12 2.66
115 116 1.883021 GCGCACCATGCCTAACTTT 59.117 52.632 0.30 0.00 41.12 2.66
116 117 0.243636 GCGCACCATGCCTAACTTTT 59.756 50.000 0.30 0.00 41.12 2.27
117 118 1.336795 GCGCACCATGCCTAACTTTTT 60.337 47.619 0.30 0.00 41.12 1.94
118 119 2.595386 CGCACCATGCCTAACTTTTTC 58.405 47.619 0.00 0.00 41.12 2.29
119 120 2.671070 CGCACCATGCCTAACTTTTTCC 60.671 50.000 0.00 0.00 41.12 3.13
120 121 2.562738 GCACCATGCCTAACTTTTTCCT 59.437 45.455 0.00 0.00 37.42 3.36
121 122 3.614870 GCACCATGCCTAACTTTTTCCTG 60.615 47.826 0.00 0.00 37.42 3.86
122 123 3.056607 CACCATGCCTAACTTTTTCCTGG 60.057 47.826 0.00 0.00 0.00 4.45
123 124 3.181423 ACCATGCCTAACTTTTTCCTGGA 60.181 43.478 0.00 0.00 0.00 3.86
124 125 3.445096 CCATGCCTAACTTTTTCCTGGAG 59.555 47.826 0.00 0.00 0.00 3.86
125 126 3.154827 TGCCTAACTTTTTCCTGGAGG 57.845 47.619 0.00 0.00 0.00 4.30
126 127 2.445525 TGCCTAACTTTTTCCTGGAGGT 59.554 45.455 0.00 0.00 36.34 3.85
127 128 3.117284 TGCCTAACTTTTTCCTGGAGGTT 60.117 43.478 0.00 4.40 36.34 3.50
128 129 3.506455 GCCTAACTTTTTCCTGGAGGTTC 59.494 47.826 0.00 0.00 36.34 3.62
129 130 4.725490 CCTAACTTTTTCCTGGAGGTTCA 58.275 43.478 0.00 0.00 36.34 3.18
130 131 4.519350 CCTAACTTTTTCCTGGAGGTTCAC 59.481 45.833 0.00 0.00 36.34 3.18
131 132 3.953542 ACTTTTTCCTGGAGGTTCACT 57.046 42.857 0.00 0.00 36.34 3.41
132 133 3.821748 ACTTTTTCCTGGAGGTTCACTC 58.178 45.455 0.00 0.00 45.84 3.51
133 134 3.459969 ACTTTTTCCTGGAGGTTCACTCT 59.540 43.478 0.00 0.00 45.83 3.24
134 135 3.492102 TTTTCCTGGAGGTTCACTCTG 57.508 47.619 0.00 0.00 45.83 3.35
135 136 0.687354 TTCCTGGAGGTTCACTCTGC 59.313 55.000 0.00 0.00 45.83 4.26
136 137 0.178921 TCCTGGAGGTTCACTCTGCT 60.179 55.000 0.00 0.00 45.83 4.24
137 138 1.077169 TCCTGGAGGTTCACTCTGCTA 59.923 52.381 0.00 0.00 45.83 3.49
138 139 2.114616 CCTGGAGGTTCACTCTGCTAT 58.885 52.381 0.00 0.00 45.83 2.97
139 140 2.102252 CCTGGAGGTTCACTCTGCTATC 59.898 54.545 0.00 0.00 45.83 2.08
140 141 3.030291 CTGGAGGTTCACTCTGCTATCT 58.970 50.000 0.00 0.00 45.83 1.98
141 142 3.445008 TGGAGGTTCACTCTGCTATCTT 58.555 45.455 0.00 0.00 45.83 2.40
142 143 3.449018 TGGAGGTTCACTCTGCTATCTTC 59.551 47.826 0.00 0.00 45.83 2.87
143 144 3.704061 GGAGGTTCACTCTGCTATCTTCT 59.296 47.826 0.00 0.00 45.83 2.85
144 145 4.202111 GGAGGTTCACTCTGCTATCTTCTC 60.202 50.000 0.00 0.00 45.83 2.87
145 146 3.380004 AGGTTCACTCTGCTATCTTCTCG 59.620 47.826 0.00 0.00 0.00 4.04
146 147 3.378742 GGTTCACTCTGCTATCTTCTCGA 59.621 47.826 0.00 0.00 0.00 4.04
147 148 4.142359 GGTTCACTCTGCTATCTTCTCGAA 60.142 45.833 0.00 0.00 0.00 3.71
148 149 5.403246 GTTCACTCTGCTATCTTCTCGAAA 58.597 41.667 0.00 0.00 0.00 3.46
149 150 5.644977 TCACTCTGCTATCTTCTCGAAAA 57.355 39.130 0.00 0.00 0.00 2.29
150 151 6.214191 TCACTCTGCTATCTTCTCGAAAAT 57.786 37.500 0.00 0.00 0.00 1.82
151 152 6.038985 TCACTCTGCTATCTTCTCGAAAATG 58.961 40.000 0.00 0.00 0.00 2.32
152 153 6.038985 CACTCTGCTATCTTCTCGAAAATGA 58.961 40.000 0.00 0.00 0.00 2.57
153 154 6.198778 CACTCTGCTATCTTCTCGAAAATGAG 59.801 42.308 0.00 0.00 37.33 2.90
154 155 5.046529 TCTGCTATCTTCTCGAAAATGAGC 58.953 41.667 0.00 0.00 35.90 4.26
155 156 4.758688 TGCTATCTTCTCGAAAATGAGCA 58.241 39.130 4.10 4.10 35.90 4.26
156 157 4.568359 TGCTATCTTCTCGAAAATGAGCAC 59.432 41.667 4.10 0.00 35.90 4.40
157 158 4.808364 GCTATCTTCTCGAAAATGAGCACT 59.192 41.667 0.00 0.00 35.90 4.40
171 172 2.029020 TGAGCACTCGCACTCAAGTAAT 60.029 45.455 0.00 0.00 39.89 1.89
172 173 2.341257 AGCACTCGCACTCAAGTAATG 58.659 47.619 0.00 0.00 42.27 1.90
174 175 2.159787 GCACTCGCACTCAAGTAATGTG 60.160 50.000 0.00 0.00 38.36 3.21
178 179 4.923871 ACTCGCACTCAAGTAATGTGTAAG 59.076 41.667 0.00 0.00 34.13 2.34
183 184 6.292649 CGCACTCAAGTAATGTGTAAGAACAA 60.293 38.462 0.00 0.00 37.36 2.83
194 195 5.328691 TGTGTAAGAACAAAAGAAGCAACG 58.671 37.500 0.00 0.00 37.36 4.10
283 284 4.766891 TCAAATCCCACTCTGGTCAAATTC 59.233 41.667 0.00 0.00 35.17 2.17
285 286 2.348472 TCCCACTCTGGTCAAATTCCT 58.652 47.619 0.00 0.00 35.17 3.36
286 287 2.716424 TCCCACTCTGGTCAAATTCCTT 59.284 45.455 0.00 0.00 35.17 3.36
287 288 3.140144 TCCCACTCTGGTCAAATTCCTTT 59.860 43.478 0.00 0.00 35.17 3.11
288 289 3.897505 CCCACTCTGGTCAAATTCCTTTT 59.102 43.478 0.00 0.00 35.17 2.27
289 290 4.344968 CCCACTCTGGTCAAATTCCTTTTT 59.655 41.667 0.00 0.00 35.17 1.94
290 291 5.509670 CCCACTCTGGTCAAATTCCTTTTTC 60.510 44.000 0.00 0.00 35.17 2.29
291 292 5.302823 CCACTCTGGTCAAATTCCTTTTTCT 59.697 40.000 0.00 0.00 31.35 2.52
292 293 6.490040 CCACTCTGGTCAAATTCCTTTTTCTA 59.510 38.462 0.00 0.00 31.35 2.10
293 294 7.177392 CCACTCTGGTCAAATTCCTTTTTCTAT 59.823 37.037 0.00 0.00 31.35 1.98
294 295 8.579863 CACTCTGGTCAAATTCCTTTTTCTATT 58.420 33.333 0.00 0.00 0.00 1.73
295 296 9.147732 ACTCTGGTCAAATTCCTTTTTCTATTT 57.852 29.630 0.00 0.00 0.00 1.40
332 333 4.961438 AAAAGCACAATCAAATCCCACT 57.039 36.364 0.00 0.00 0.00 4.00
333 334 4.525912 AAAGCACAATCAAATCCCACTC 57.474 40.909 0.00 0.00 0.00 3.51
334 335 3.446442 AGCACAATCAAATCCCACTCT 57.554 42.857 0.00 0.00 0.00 3.24
335 336 3.087031 AGCACAATCAAATCCCACTCTG 58.913 45.455 0.00 0.00 0.00 3.35
336 337 2.165030 GCACAATCAAATCCCACTCTGG 59.835 50.000 0.00 0.00 37.25 3.86
337 338 3.424703 CACAATCAAATCCCACTCTGGT 58.575 45.455 0.00 0.00 35.17 4.00
338 339 3.441572 CACAATCAAATCCCACTCTGGTC 59.558 47.826 0.00 0.00 35.17 4.02
339 340 3.074390 ACAATCAAATCCCACTCTGGTCA 59.926 43.478 0.00 0.00 35.17 4.02
340 341 4.081406 CAATCAAATCCCACTCTGGTCAA 58.919 43.478 0.00 0.00 35.17 3.18
341 342 3.874383 TCAAATCCCACTCTGGTCAAA 57.126 42.857 0.00 0.00 35.17 2.69
342 343 4.387026 TCAAATCCCACTCTGGTCAAAT 57.613 40.909 0.00 0.00 35.17 2.32
343 344 4.739793 TCAAATCCCACTCTGGTCAAATT 58.260 39.130 0.00 0.00 35.17 1.82
344 345 4.766891 TCAAATCCCACTCTGGTCAAATTC 59.233 41.667 0.00 0.00 35.17 2.17
345 346 2.879103 TCCCACTCTGGTCAAATTCC 57.121 50.000 0.00 0.00 35.17 3.01
346 347 2.348472 TCCCACTCTGGTCAAATTCCT 58.652 47.619 0.00 0.00 35.17 3.36
347 348 2.716424 TCCCACTCTGGTCAAATTCCTT 59.284 45.455 0.00 0.00 35.17 3.36
348 349 3.140144 TCCCACTCTGGTCAAATTCCTTT 59.860 43.478 0.00 0.00 35.17 3.11
349 350 3.897505 CCCACTCTGGTCAAATTCCTTTT 59.102 43.478 0.00 0.00 35.17 2.27
350 351 4.344968 CCCACTCTGGTCAAATTCCTTTTT 59.655 41.667 0.00 0.00 35.17 1.94
351 352 5.509670 CCCACTCTGGTCAAATTCCTTTTTC 60.510 44.000 0.00 0.00 35.17 2.29
352 353 5.302823 CCACTCTGGTCAAATTCCTTTTTCT 59.697 40.000 0.00 0.00 31.35 2.52
353 354 6.490040 CCACTCTGGTCAAATTCCTTTTTCTA 59.510 38.462 0.00 0.00 31.35 2.10
354 355 7.177392 CCACTCTGGTCAAATTCCTTTTTCTAT 59.823 37.037 0.00 0.00 31.35 1.98
355 356 8.579863 CACTCTGGTCAAATTCCTTTTTCTATT 58.420 33.333 0.00 0.00 0.00 1.73
356 357 9.147732 ACTCTGGTCAAATTCCTTTTTCTATTT 57.852 29.630 0.00 0.00 0.00 1.40
357 358 9.987272 CTCTGGTCAAATTCCTTTTTCTATTTT 57.013 29.630 0.00 0.00 0.00 1.82
360 361 9.898152 TGGTCAAATTCCTTTTTCTATTTTTGT 57.102 25.926 0.00 0.00 0.00 2.83
393 394 4.961438 AAAAGCACAATCAAATCCCACT 57.039 36.364 0.00 0.00 0.00 4.00
394 395 4.525912 AAAGCACAATCAAATCCCACTC 57.474 40.909 0.00 0.00 0.00 3.51
395 396 3.446442 AGCACAATCAAATCCCACTCT 57.554 42.857 0.00 0.00 0.00 3.24
396 397 3.087031 AGCACAATCAAATCCCACTCTG 58.913 45.455 0.00 0.00 0.00 3.35
397 398 2.165030 GCACAATCAAATCCCACTCTGG 59.835 50.000 0.00 0.00 37.25 3.86
398 399 3.424703 CACAATCAAATCCCACTCTGGT 58.575 45.455 0.00 0.00 35.17 4.00
399 400 3.441572 CACAATCAAATCCCACTCTGGTC 59.558 47.826 0.00 0.00 35.17 4.02
400 401 3.074390 ACAATCAAATCCCACTCTGGTCA 59.926 43.478 0.00 0.00 35.17 4.02
401 402 4.081406 CAATCAAATCCCACTCTGGTCAA 58.919 43.478 0.00 0.00 35.17 3.18
402 403 3.874383 TCAAATCCCACTCTGGTCAAA 57.126 42.857 0.00 0.00 35.17 2.69
403 404 4.387026 TCAAATCCCACTCTGGTCAAAT 57.613 40.909 0.00 0.00 35.17 2.32
404 405 4.739793 TCAAATCCCACTCTGGTCAAATT 58.260 39.130 0.00 0.00 35.17 1.82
405 406 4.766891 TCAAATCCCACTCTGGTCAAATTC 59.233 41.667 0.00 0.00 35.17 2.17
406 407 2.879103 TCCCACTCTGGTCAAATTCC 57.121 50.000 0.00 0.00 35.17 3.01
407 408 2.348472 TCCCACTCTGGTCAAATTCCT 58.652 47.619 0.00 0.00 35.17 3.36
408 409 2.716424 TCCCACTCTGGTCAAATTCCTT 59.284 45.455 0.00 0.00 35.17 3.36
409 410 3.140144 TCCCACTCTGGTCAAATTCCTTT 59.860 43.478 0.00 0.00 35.17 3.11
410 411 3.897505 CCCACTCTGGTCAAATTCCTTTT 59.102 43.478 0.00 0.00 35.17 2.27
411 412 4.344968 CCCACTCTGGTCAAATTCCTTTTT 59.655 41.667 0.00 0.00 35.17 1.94
412 413 5.509670 CCCACTCTGGTCAAATTCCTTTTTC 60.510 44.000 0.00 0.00 35.17 2.29
413 414 5.302823 CCACTCTGGTCAAATTCCTTTTTCT 59.697 40.000 0.00 0.00 31.35 2.52
414 415 6.490040 CCACTCTGGTCAAATTCCTTTTTCTA 59.510 38.462 0.00 0.00 31.35 2.10
415 416 7.177392 CCACTCTGGTCAAATTCCTTTTTCTAT 59.823 37.037 0.00 0.00 31.35 1.98
416 417 8.579863 CACTCTGGTCAAATTCCTTTTTCTATT 58.420 33.333 0.00 0.00 0.00 1.73
417 418 9.147732 ACTCTGGTCAAATTCCTTTTTCTATTT 57.852 29.630 0.00 0.00 0.00 1.40
418 419 9.987272 CTCTGGTCAAATTCCTTTTTCTATTTT 57.013 29.630 0.00 0.00 0.00 1.82
421 422 9.898152 TGGTCAAATTCCTTTTTCTATTTTTGT 57.102 25.926 0.00 0.00 0.00 2.83
480 483 8.777865 TGTATCTTAAGTTGATGGAGTTTGAG 57.222 34.615 1.63 0.00 0.00 3.02
488 491 3.674997 TGATGGAGTTTGAGTTAGCCAC 58.325 45.455 0.00 0.00 0.00 5.01
489 492 2.163818 TGGAGTTTGAGTTAGCCACG 57.836 50.000 0.00 0.00 0.00 4.94
490 493 1.689813 TGGAGTTTGAGTTAGCCACGA 59.310 47.619 0.00 0.00 0.00 4.35
491 494 2.103432 TGGAGTTTGAGTTAGCCACGAA 59.897 45.455 0.00 0.00 0.00 3.85
492 495 3.135994 GGAGTTTGAGTTAGCCACGAAA 58.864 45.455 0.00 0.00 0.00 3.46
526 529 0.374758 CCATGCATGCACACGAGTAC 59.625 55.000 25.37 0.00 0.00 2.73
532 535 2.677199 CATGCACACGAGTACTCACTT 58.323 47.619 22.37 3.34 34.21 3.16
533 536 2.882927 TGCACACGAGTACTCACTTT 57.117 45.000 22.37 0.79 34.21 2.66
534 537 3.173668 TGCACACGAGTACTCACTTTT 57.826 42.857 22.37 0.00 34.21 2.27
535 538 3.527533 TGCACACGAGTACTCACTTTTT 58.472 40.909 22.37 0.00 34.21 1.94
536 539 4.684877 TGCACACGAGTACTCACTTTTTA 58.315 39.130 22.37 0.60 34.21 1.52
537 540 4.505191 TGCACACGAGTACTCACTTTTTAC 59.495 41.667 22.37 4.73 34.21 2.01
538 541 4.084693 GCACACGAGTACTCACTTTTTACC 60.085 45.833 22.37 0.00 34.21 2.85
540 543 3.671928 CACGAGTACTCACTTTTTACCGG 59.328 47.826 22.37 0.00 34.21 5.28
541 544 3.569701 ACGAGTACTCACTTTTTACCGGA 59.430 43.478 22.37 0.00 34.21 5.14
542 545 4.164294 CGAGTACTCACTTTTTACCGGAG 58.836 47.826 22.37 0.00 34.21 4.63
543 546 4.492611 GAGTACTCACTTTTTACCGGAGG 58.507 47.826 18.20 0.00 46.11 4.30
544 547 5.149778 GAGTACTCACTTTTTACCGGAGGC 61.150 50.000 18.20 0.00 44.86 4.70
575 578 3.382832 CGGGAGGAGTTCGTGCCT 61.383 66.667 10.04 0.00 39.62 4.75
576 579 2.266055 GGGAGGAGTTCGTGCCTG 59.734 66.667 5.28 0.00 38.87 4.85
577 580 2.435059 GGAGGAGTTCGTGCCTGC 60.435 66.667 0.00 0.00 35.45 4.85
578 581 2.811317 GAGGAGTTCGTGCCTGCG 60.811 66.667 0.00 0.00 33.84 5.18
603 606 0.114364 TCACTCTGTCCAGCTACCCA 59.886 55.000 0.00 0.00 0.00 4.51
610 613 0.606604 GTCCAGCTACCCAAGACGAA 59.393 55.000 0.00 0.00 0.00 3.85
611 614 1.207329 GTCCAGCTACCCAAGACGAAT 59.793 52.381 0.00 0.00 0.00 3.34
627 633 1.852942 GAATCAACCAGCGCGATCTA 58.147 50.000 12.10 0.00 0.00 1.98
628 634 1.789464 GAATCAACCAGCGCGATCTAG 59.211 52.381 12.10 0.00 0.00 2.43
707 713 3.371063 CTTGCACTGCCCAGCCAG 61.371 66.667 0.00 0.00 38.78 4.85
730 753 1.074951 CCAGGTGTTCCCCTCCAAC 59.925 63.158 0.00 0.00 30.33 3.77
771 813 1.374758 CTCCTGTCTGAACACGGCC 60.375 63.158 0.00 0.00 0.00 6.13
773 815 2.029073 CTGTCTGAACACGGCCGT 59.971 61.111 28.70 28.70 0.00 5.68
800 846 0.034089 AACTTGGCCCCTACTGCATC 60.034 55.000 0.00 0.00 0.00 3.91
862 908 2.338620 CGTCCTCGCCTTGTGTCA 59.661 61.111 0.00 0.00 0.00 3.58
863 909 1.300620 CGTCCTCGCCTTGTGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
864 910 1.557443 CGTCCTCGCCTTGTGTCAAC 61.557 60.000 0.00 0.00 0.00 3.18
865 911 1.300620 TCCTCGCCTTGTGTCAACG 60.301 57.895 0.00 0.00 0.00 4.10
866 912 1.594293 CCTCGCCTTGTGTCAACGT 60.594 57.895 0.00 0.00 0.00 3.99
867 913 1.557443 CCTCGCCTTGTGTCAACGTC 61.557 60.000 0.00 0.00 0.00 4.34
868 914 1.876453 CTCGCCTTGTGTCAACGTCG 61.876 60.000 0.00 0.00 0.00 5.12
869 915 2.935955 GCCTTGTGTCAACGTCGG 59.064 61.111 0.00 0.00 0.00 4.79
870 916 2.935955 CCTTGTGTCAACGTCGGC 59.064 61.111 0.00 0.00 0.00 5.54
871 917 2.604174 CCTTGTGTCAACGTCGGCC 61.604 63.158 0.00 0.00 0.00 6.13
872 918 2.938823 CTTGTGTCAACGTCGGCCG 61.939 63.158 22.12 22.12 44.03 6.13
873 919 4.953868 TGTGTCAACGTCGGCCGG 62.954 66.667 27.83 13.23 42.24 6.13
874 920 4.651008 GTGTCAACGTCGGCCGGA 62.651 66.667 27.83 11.61 42.24 5.14
875 921 4.351938 TGTCAACGTCGGCCGGAG 62.352 66.667 27.83 21.59 42.24 4.63
887 933 2.890474 CCGGAGGCCGTCATTTCG 60.890 66.667 0.00 0.00 46.80 3.46
888 934 2.125673 CGGAGGCCGTCATTTCGT 60.126 61.111 0.00 0.00 42.73 3.85
889 935 2.165301 CGGAGGCCGTCATTTCGTC 61.165 63.158 0.00 0.00 42.73 4.20
892 938 0.806492 GAGGCCGTCATTTCGTCTCC 60.806 60.000 0.00 0.00 0.00 3.71
919 965 5.700832 CACAACCCGACTGCATATACATAAT 59.299 40.000 0.00 0.00 0.00 1.28
920 966 6.871492 CACAACCCGACTGCATATACATAATA 59.129 38.462 0.00 0.00 0.00 0.98
921 967 7.386573 CACAACCCGACTGCATATACATAATAA 59.613 37.037 0.00 0.00 0.00 1.40
947 993 2.505498 CGCGCACACGATCACCTAC 61.505 63.158 8.75 0.00 43.93 3.18
955 1001 2.097036 CACGATCACCTACCACCAGTA 58.903 52.381 0.00 0.00 0.00 2.74
967 1015 1.406205 CCACCAGTACACACACACACA 60.406 52.381 0.00 0.00 0.00 3.72
974 1022 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
976 1024 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
996 1065 1.301322 GAGGCAAGCTAGATCGGCC 60.301 63.158 14.04 14.04 44.92 6.13
1061 1140 2.600470 GGCCAAAGGGAAGCCGTT 60.600 61.111 0.00 0.00 36.84 4.44
1114 1202 1.513622 GAGGAGGAGTCGTTGGAGC 59.486 63.158 0.00 0.00 0.00 4.70
1275 1373 3.382832 AAGGGCTGGGTCGACGAG 61.383 66.667 9.92 9.09 0.00 4.18
1389 1487 1.714541 TGAGCTCATCTCATCCTCCC 58.285 55.000 13.74 0.00 46.34 4.30
1418 1516 0.243365 TTATGTTGCTTGCCTTGCCG 59.757 50.000 0.00 0.00 0.00 5.69
1437 1545 3.921521 CCTCTCGGCTCCGTTACT 58.078 61.111 8.28 0.00 40.74 2.24
1438 1546 1.433879 CCTCTCGGCTCCGTTACTG 59.566 63.158 8.28 0.00 40.74 2.74
1465 1573 0.609406 CAGTCAGTCTCTCCCGTCCA 60.609 60.000 0.00 0.00 0.00 4.02
1466 1574 0.333312 AGTCAGTCTCTCCCGTCCAT 59.667 55.000 0.00 0.00 0.00 3.41
1475 1589 2.091541 TCTCCCGTCCATGCATTTTTC 58.908 47.619 0.00 0.00 0.00 2.29
1492 1606 3.731652 TTTCCTGGTCAATTTGCACTG 57.268 42.857 0.00 0.00 0.00 3.66
1509 1655 4.155826 TGCACTGGATTAATTTTGTCTCCG 59.844 41.667 0.00 0.00 0.00 4.63
1519 1665 0.034337 TTTGTCTCCGTCCCTTTCCG 59.966 55.000 0.00 0.00 0.00 4.30
1525 1671 0.890683 TCCGTCCCTTTCCGTTAGAC 59.109 55.000 0.00 0.00 0.00 2.59
1528 1674 2.955477 GTCCCTTTCCGTTAGACGAT 57.045 50.000 1.51 0.00 46.05 3.73
1540 1686 5.068067 TCCGTTAGACGATAATGTCAATGGA 59.932 40.000 1.51 12.08 46.05 3.41
1600 1753 2.047274 CGTGGCCTGTCATCGGTT 60.047 61.111 3.32 0.00 0.00 4.44
1607 1760 2.202566 GCCTGTCATCGGTTTACTAGC 58.797 52.381 0.00 0.00 0.00 3.42
1643 1796 6.513180 TGCATGTACCTAGCTGATAAGTAAC 58.487 40.000 0.00 0.00 0.00 2.50
1663 1816 2.734346 GCGTGCCAATGCCAACAC 60.734 61.111 0.00 0.00 36.33 3.32
1664 1817 2.049248 CGTGCCAATGCCAACACC 60.049 61.111 0.00 0.00 36.33 4.16
1665 1818 2.854401 CGTGCCAATGCCAACACCA 61.854 57.895 0.00 0.00 36.33 4.17
1666 1819 1.445095 GTGCCAATGCCAACACCAA 59.555 52.632 0.00 0.00 36.33 3.67
1675 1828 0.108424 GCCAACACCAACAAGCAACA 60.108 50.000 0.00 0.00 0.00 3.33
1700 1858 2.562298 TGCATTTTCCAACTCCATCCAC 59.438 45.455 0.00 0.00 0.00 4.02
1704 1862 0.768622 TTCCAACTCCATCCACGGTT 59.231 50.000 0.00 0.00 0.00 4.44
1715 1873 0.394488 TCCACGGTTTGCTTCCAACA 60.394 50.000 0.00 0.00 0.00 3.33
1716 1874 0.248866 CCACGGTTTGCTTCCAACAC 60.249 55.000 0.00 0.00 0.00 3.32
1717 1875 0.591236 CACGGTTTGCTTCCAACACG 60.591 55.000 0.00 0.00 36.77 4.49
1718 1876 1.657181 CGGTTTGCTTCCAACACGC 60.657 57.895 0.00 0.00 0.00 5.34
1730 1888 3.081061 TCCAACACGCATGCTTCTAAAT 58.919 40.909 17.13 0.00 0.00 1.40
1744 1985 8.768955 CATGCTTCTAAATCCATACTACTGTTC 58.231 37.037 0.00 0.00 0.00 3.18
1751 1992 9.613428 CTAAATCCATACTACTGTTCAAATCCA 57.387 33.333 0.00 0.00 0.00 3.41
1759 2000 7.856145 ACTACTGTTCAAATCCATGATTCTC 57.144 36.000 0.00 0.00 30.29 2.87
1769 2010 7.606073 TCAAATCCATGATTCTCTTTAACACGA 59.394 33.333 0.00 0.00 30.29 4.35
1777 2022 8.996024 TGATTCTCTTTAACACGATACAATCA 57.004 30.769 0.00 0.00 0.00 2.57
1790 2035 6.684131 CACGATACAATCACAAATGCTTACTG 59.316 38.462 0.00 0.00 0.00 2.74
1812 2057 1.807139 TACACGCACATGCATTCACT 58.193 45.000 0.00 0.00 42.21 3.41
1813 2058 0.239082 ACACGCACATGCATTCACTG 59.761 50.000 0.00 0.00 42.21 3.66
1814 2059 0.239082 CACGCACATGCATTCACTGT 59.761 50.000 0.00 0.00 42.21 3.55
1815 2060 1.464219 CACGCACATGCATTCACTGTA 59.536 47.619 0.00 0.00 42.21 2.74
1816 2061 2.096335 CACGCACATGCATTCACTGTAT 59.904 45.455 0.00 0.00 42.21 2.29
1822 2067 3.943958 CATGCATTCACTGTATGGAACG 58.056 45.455 0.00 0.00 42.39 3.95
1823 2068 1.737236 TGCATTCACTGTATGGAACGC 59.263 47.619 0.00 0.00 33.23 4.84
1824 2069 1.737236 GCATTCACTGTATGGAACGCA 59.263 47.619 0.00 0.00 32.90 5.24
1825 2070 2.161410 GCATTCACTGTATGGAACGCAA 59.839 45.455 0.00 0.00 32.90 4.85
1826 2071 3.365868 GCATTCACTGTATGGAACGCAAA 60.366 43.478 0.00 0.00 32.90 3.68
1827 2072 4.675146 GCATTCACTGTATGGAACGCAAAT 60.675 41.667 0.00 0.00 32.90 2.32
1828 2073 4.418013 TTCACTGTATGGAACGCAAATG 57.582 40.909 0.00 0.00 0.00 2.32
1829 2074 2.161410 TCACTGTATGGAACGCAAATGC 59.839 45.455 0.00 0.00 37.78 3.56
1830 2075 2.162208 CACTGTATGGAACGCAAATGCT 59.838 45.455 3.63 0.00 39.32 3.79
1831 2076 2.819608 ACTGTATGGAACGCAAATGCTT 59.180 40.909 3.63 0.00 39.32 3.91
1832 2077 4.006989 ACTGTATGGAACGCAAATGCTTA 58.993 39.130 3.63 0.00 39.32 3.09
1833 2078 4.640201 ACTGTATGGAACGCAAATGCTTAT 59.360 37.500 3.63 0.00 39.32 1.73
1834 2079 5.125417 ACTGTATGGAACGCAAATGCTTATT 59.875 36.000 3.63 0.00 39.32 1.40
1835 2080 5.339177 TGTATGGAACGCAAATGCTTATTG 58.661 37.500 3.63 0.00 39.32 1.90
1850 2095 2.753989 TATTGCATACACGCACATGC 57.246 45.000 8.34 8.34 46.21 4.06
1853 2098 3.628005 GCATACACGCACATGCATT 57.372 47.368 0.00 0.00 45.51 3.56
1857 2102 0.801872 TACACGCACATGCATTCACC 59.198 50.000 0.00 0.00 42.21 4.02
1860 2106 0.035534 ACGCACATGCATTCACCCTA 60.036 50.000 0.00 0.00 42.21 3.53
1862 2108 1.002142 CGCACATGCATTCACCCTATG 60.002 52.381 0.00 0.00 42.21 2.23
1867 2113 3.924238 GCATTCACCCTATGCAACG 57.076 52.632 0.00 0.00 45.93 4.10
1868 2114 0.248621 GCATTCACCCTATGCAACGC 60.249 55.000 0.00 0.00 45.93 4.84
1871 2117 0.036164 TTCACCCTATGCAACGCACT 59.964 50.000 0.00 0.00 43.04 4.40
1876 2122 0.108186 CCTATGCAACGCACTCCTGA 60.108 55.000 0.00 0.00 43.04 3.86
1879 2125 0.251354 ATGCAACGCACTCCTGAGAT 59.749 50.000 0.22 0.00 43.04 2.75
1880 2126 0.894835 TGCAACGCACTCCTGAGATA 59.105 50.000 0.22 0.00 31.71 1.98
1881 2127 1.482182 TGCAACGCACTCCTGAGATAT 59.518 47.619 0.22 0.00 31.71 1.63
1883 2129 2.286294 GCAACGCACTCCTGAGATATTG 59.714 50.000 0.22 1.94 0.00 1.90
1884 2130 3.785486 CAACGCACTCCTGAGATATTGA 58.215 45.455 0.22 0.00 0.00 2.57
1888 2135 3.637432 GCACTCCTGAGATATTGAGTCG 58.363 50.000 0.22 0.00 35.97 4.18
1910 2157 4.479619 GGCACACATTTTGAAGTCTCATC 58.520 43.478 0.00 0.00 0.00 2.92
2017 2264 7.343057 GGGAAGAAAAATCACATCCCTTTCTAT 59.657 37.037 0.00 0.00 42.64 1.98
2204 2467 0.392336 TGGTTTGCTTCCAACATGCC 59.608 50.000 0.00 0.00 31.50 4.40
2205 2468 0.667184 GGTTTGCTTCCAACATGCCG 60.667 55.000 0.00 0.00 0.00 5.69
2206 2469 1.006337 TTTGCTTCCAACATGCCGC 60.006 52.632 0.00 0.00 0.00 6.53
2225 2488 4.497507 GCCGCTTCTAAATTCATACCAACC 60.498 45.833 0.00 0.00 0.00 3.77
2233 2496 9.504708 TTCTAAATTCATACCAACCGTCTAAAA 57.495 29.630 0.00 0.00 0.00 1.52
2235 2498 7.513371 AAATTCATACCAACCGTCTAAAACA 57.487 32.000 0.00 0.00 0.00 2.83
2249 2568 9.226606 ACCGTCTAAAACAATGATTCTATTTGA 57.773 29.630 0.00 0.00 0.00 2.69
2250 2569 9.708222 CCGTCTAAAACAATGATTCTATTTGAG 57.292 33.333 0.00 0.00 0.00 3.02
2260 2579 9.162793 CAATGATTCTATTTGAGTATTTGACGC 57.837 33.333 0.00 0.00 0.00 5.19
2261 2580 7.841915 TGATTCTATTTGAGTATTTGACGCA 57.158 32.000 0.00 0.00 35.89 5.24
2262 2581 8.262715 TGATTCTATTTGAGTATTTGACGCAA 57.737 30.769 0.00 0.00 44.90 4.85
2268 2587 3.867665 TGAGTATTTGACGCAAAACACG 58.132 40.909 8.65 0.00 36.90 4.49
2269 2588 4.201832 TTGAGTATTTGACGCAAAACACGT 60.202 37.500 8.65 0.00 43.81 4.49
2270 2589 4.507021 TGAGTATTTGACGCAAAACACGTA 59.493 37.500 8.65 3.85 45.24 3.57
2271 2590 5.177881 TGAGTATTTGACGCAAAACACGTAT 59.822 36.000 8.65 0.00 45.24 3.06
2272 2591 5.992729 AGTATTTGACGCAAAACACGTATT 58.007 33.333 8.65 0.00 45.24 1.89
2273 2592 6.432107 AGTATTTGACGCAAAACACGTATTT 58.568 32.000 8.65 0.00 45.24 1.40
2274 2593 5.799542 ATTTGACGCAAAACACGTATTTC 57.200 34.783 8.65 0.00 45.24 2.17
2321 2640 6.677781 TTTGAATTGTAGGTGCTAGTATGC 57.322 37.500 0.00 0.00 0.00 3.14
2327 2646 6.419484 TTGTAGGTGCTAGTATGCATGTAT 57.581 37.500 10.16 0.82 45.23 2.29
2387 2712 1.556564 TCTATTGCTCGTACGCTTGC 58.443 50.000 11.24 14.68 0.00 4.01
2425 2750 4.859304 TCTTGCTCAATTTGCACTTCAT 57.141 36.364 2.70 0.00 40.40 2.57
2441 2766 4.749598 CACTTCATTAACTTTGTTTGCCCC 59.250 41.667 0.00 0.00 0.00 5.80
2442 2767 3.651803 TCATTAACTTTGTTTGCCCCG 57.348 42.857 0.00 0.00 0.00 5.73
2443 2768 3.223435 TCATTAACTTTGTTTGCCCCGA 58.777 40.909 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.253188 GTGTGTCACATGGTGCATAAACT 59.747 43.478 9.31 0.00 34.08 2.66
1 2 3.004210 TGTGTGTCACATGGTGCATAAAC 59.996 43.478 9.31 0.00 39.62 2.01
2 3 3.217626 TGTGTGTCACATGGTGCATAAA 58.782 40.909 9.31 0.00 39.62 1.40
3 4 2.856222 TGTGTGTCACATGGTGCATAA 58.144 42.857 9.31 0.00 39.62 1.90
4 5 2.557920 TGTGTGTCACATGGTGCATA 57.442 45.000 9.31 0.00 39.62 3.14
5 6 3.418022 TGTGTGTCACATGGTGCAT 57.582 47.368 9.31 0.00 39.62 3.96
6 7 4.972875 TGTGTGTCACATGGTGCA 57.027 50.000 9.31 0.00 39.62 4.57
14 15 3.119849 GGATTGCTTACCATGTGTGTCAC 60.120 47.826 0.00 0.00 34.56 3.67
15 16 3.081061 GGATTGCTTACCATGTGTGTCA 58.919 45.455 0.00 0.00 0.00 3.58
16 17 3.081061 TGGATTGCTTACCATGTGTGTC 58.919 45.455 0.00 0.00 0.00 3.67
17 18 3.153369 TGGATTGCTTACCATGTGTGT 57.847 42.857 0.00 0.00 0.00 3.72
18 19 4.236935 GTTTGGATTGCTTACCATGTGTG 58.763 43.478 0.00 0.00 36.02 3.82
19 20 3.894427 TGTTTGGATTGCTTACCATGTGT 59.106 39.130 0.00 0.00 36.02 3.72
20 21 4.517952 TGTTTGGATTGCTTACCATGTG 57.482 40.909 0.00 0.00 36.02 3.21
21 22 5.743636 AATGTTTGGATTGCTTACCATGT 57.256 34.783 0.00 0.00 36.02 3.21
22 23 6.164876 TGAAATGTTTGGATTGCTTACCATG 58.835 36.000 0.00 0.00 36.02 3.66
23 24 6.211184 TCTGAAATGTTTGGATTGCTTACCAT 59.789 34.615 0.00 0.00 36.02 3.55
24 25 5.538053 TCTGAAATGTTTGGATTGCTTACCA 59.462 36.000 0.00 0.00 0.00 3.25
25 26 6.024552 TCTGAAATGTTTGGATTGCTTACC 57.975 37.500 0.00 0.00 0.00 2.85
26 27 7.945033 TTTCTGAAATGTTTGGATTGCTTAC 57.055 32.000 0.00 0.00 0.00 2.34
27 28 9.859427 CTATTTCTGAAATGTTTGGATTGCTTA 57.141 29.630 22.47 0.22 32.38 3.09
28 29 8.370182 ACTATTTCTGAAATGTTTGGATTGCTT 58.630 29.630 22.47 0.00 32.38 3.91
29 30 7.899973 ACTATTTCTGAAATGTTTGGATTGCT 58.100 30.769 22.47 0.00 32.38 3.91
30 31 8.538409 AACTATTTCTGAAATGTTTGGATTGC 57.462 30.769 22.47 0.00 32.38 3.56
33 34 8.992073 GCAAAACTATTTCTGAAATGTTTGGAT 58.008 29.630 27.37 17.87 34.95 3.41
34 35 7.168972 CGCAAAACTATTTCTGAAATGTTTGGA 59.831 33.333 27.37 12.06 34.95 3.53
35 36 7.282916 CGCAAAACTATTTCTGAAATGTTTGG 58.717 34.615 27.50 25.55 34.95 3.28
36 37 6.787043 GCGCAAAACTATTTCTGAAATGTTTG 59.213 34.615 25.97 25.61 34.95 2.93
37 38 6.478344 TGCGCAAAACTATTTCTGAAATGTTT 59.522 30.769 22.47 22.80 35.56 2.83
38 39 5.982516 TGCGCAAAACTATTTCTGAAATGTT 59.017 32.000 22.47 19.52 32.38 2.71
39 40 5.527951 TGCGCAAAACTATTTCTGAAATGT 58.472 33.333 22.47 15.78 32.38 2.71
40 41 6.308524 TGATGCGCAAAACTATTTCTGAAATG 59.691 34.615 22.47 15.25 32.38 2.32
41 42 6.389091 TGATGCGCAAAACTATTTCTGAAAT 58.611 32.000 17.11 18.64 34.90 2.17
42 43 5.767269 TGATGCGCAAAACTATTTCTGAAA 58.233 33.333 17.11 5.15 0.00 2.69
43 44 5.369685 TGATGCGCAAAACTATTTCTGAA 57.630 34.783 17.11 0.00 0.00 3.02
44 45 4.672542 GCTGATGCGCAAAACTATTTCTGA 60.673 41.667 17.11 0.00 0.00 3.27
45 46 3.545078 GCTGATGCGCAAAACTATTTCTG 59.455 43.478 17.11 10.02 0.00 3.02
46 47 3.441572 AGCTGATGCGCAAAACTATTTCT 59.558 39.130 17.11 0.00 45.42 2.52
47 48 3.762779 AGCTGATGCGCAAAACTATTTC 58.237 40.909 17.11 5.10 45.42 2.17
48 49 3.855689 AGCTGATGCGCAAAACTATTT 57.144 38.095 17.11 0.00 45.42 1.40
49 50 3.242870 GCTAGCTGATGCGCAAAACTATT 60.243 43.478 17.11 0.00 45.42 1.73
50 51 2.289002 GCTAGCTGATGCGCAAAACTAT 59.711 45.455 17.11 0.00 45.42 2.12
51 52 1.665679 GCTAGCTGATGCGCAAAACTA 59.334 47.619 17.11 13.04 45.42 2.24
52 53 0.449388 GCTAGCTGATGCGCAAAACT 59.551 50.000 17.11 12.54 45.42 2.66
53 54 0.858961 CGCTAGCTGATGCGCAAAAC 60.859 55.000 17.11 10.06 45.50 2.43
54 55 1.425031 CGCTAGCTGATGCGCAAAA 59.575 52.632 17.11 4.36 45.50 2.44
55 56 3.092403 CGCTAGCTGATGCGCAAA 58.908 55.556 17.11 4.80 45.50 3.68
60 61 4.290793 GCGCACGCTAGCTGATGC 62.291 66.667 19.85 19.85 38.26 3.91
61 62 3.634072 GGCGCACGCTAGCTGATG 61.634 66.667 13.93 9.47 41.60 3.07
62 63 4.899239 GGGCGCACGCTAGCTGAT 62.899 66.667 13.93 0.00 41.60 2.90
73 74 3.961838 AAACTATTCGGCGGGCGCA 62.962 57.895 19.97 9.31 44.11 6.09
74 75 3.164390 GAAACTATTCGGCGGGCGC 62.164 63.158 19.97 0.00 41.06 6.53
75 76 1.087771 AAGAAACTATTCGGCGGGCG 61.088 55.000 18.68 18.68 40.63 6.13
76 77 0.377203 CAAGAAACTATTCGGCGGGC 59.623 55.000 7.21 0.00 40.63 6.13
77 78 0.377203 GCAAGAAACTATTCGGCGGG 59.623 55.000 7.21 0.00 40.63 6.13
78 79 3.897819 GCAAGAAACTATTCGGCGG 57.102 52.632 7.21 0.00 40.63 6.13
80 81 0.586502 CGCGCAAGAAACTATTCGGC 60.587 55.000 8.75 0.00 40.63 5.54
81 82 0.586502 GCGCGCAAGAAACTATTCGG 60.587 55.000 29.10 0.00 40.63 4.30
82 83 0.094558 TGCGCGCAAGAAACTATTCG 59.905 50.000 34.66 0.00 40.63 3.34
83 84 1.524548 GTGCGCGCAAGAAACTATTC 58.475 50.000 38.24 15.75 43.02 1.75
84 85 0.168128 GGTGCGCGCAAGAAACTATT 59.832 50.000 38.24 0.00 43.02 1.73
85 86 0.953471 TGGTGCGCGCAAGAAACTAT 60.953 50.000 38.24 0.00 43.02 2.12
86 87 0.953471 ATGGTGCGCGCAAGAAACTA 60.953 50.000 38.24 21.48 43.02 2.24
87 88 2.260869 ATGGTGCGCGCAAGAAACT 61.261 52.632 38.24 14.55 43.02 2.66
88 89 2.082366 CATGGTGCGCGCAAGAAAC 61.082 57.895 38.24 22.98 43.02 2.78
89 90 2.254951 CATGGTGCGCGCAAGAAA 59.745 55.556 38.24 21.49 43.02 2.52
90 91 4.403137 GCATGGTGCGCGCAAGAA 62.403 61.111 38.24 24.24 33.42 2.52
95 96 4.536687 GTTAGGCATGGTGCGCGC 62.537 66.667 27.26 27.26 46.21 6.86
96 97 1.922135 AAAGTTAGGCATGGTGCGCG 61.922 55.000 0.00 0.00 46.21 6.86
97 98 0.243636 AAAAGTTAGGCATGGTGCGC 59.756 50.000 0.00 0.00 46.21 6.09
98 99 2.595386 GAAAAAGTTAGGCATGGTGCG 58.405 47.619 0.00 0.00 46.21 5.34
99 100 2.562738 AGGAAAAAGTTAGGCATGGTGC 59.437 45.455 0.00 0.00 44.08 5.01
100 101 3.056607 CCAGGAAAAAGTTAGGCATGGTG 60.057 47.826 0.00 0.00 0.00 4.17
101 102 3.165071 CCAGGAAAAAGTTAGGCATGGT 58.835 45.455 0.00 0.00 0.00 3.55
102 103 3.430453 TCCAGGAAAAAGTTAGGCATGG 58.570 45.455 0.00 0.00 0.00 3.66
103 104 3.445096 CCTCCAGGAAAAAGTTAGGCATG 59.555 47.826 0.00 0.00 37.39 4.06
104 105 3.076032 ACCTCCAGGAAAAAGTTAGGCAT 59.924 43.478 0.00 0.00 38.94 4.40
105 106 2.445525 ACCTCCAGGAAAAAGTTAGGCA 59.554 45.455 0.00 0.00 38.94 4.75
106 107 3.156288 ACCTCCAGGAAAAAGTTAGGC 57.844 47.619 0.00 0.00 38.94 3.93
107 108 4.519350 GTGAACCTCCAGGAAAAAGTTAGG 59.481 45.833 0.00 0.00 38.94 2.69
108 109 5.377478 AGTGAACCTCCAGGAAAAAGTTAG 58.623 41.667 0.00 0.00 38.94 2.34
109 110 5.132144 AGAGTGAACCTCCAGGAAAAAGTTA 59.868 40.000 0.00 0.00 41.47 2.24
110 111 4.079730 AGAGTGAACCTCCAGGAAAAAGTT 60.080 41.667 0.00 0.00 41.47 2.66
111 112 3.459969 AGAGTGAACCTCCAGGAAAAAGT 59.540 43.478 0.00 0.00 41.47 2.66
112 113 3.817647 CAGAGTGAACCTCCAGGAAAAAG 59.182 47.826 0.00 0.00 41.47 2.27
113 114 3.820557 CAGAGTGAACCTCCAGGAAAAA 58.179 45.455 0.00 0.00 41.47 1.94
114 115 2.487265 GCAGAGTGAACCTCCAGGAAAA 60.487 50.000 0.00 0.00 41.47 2.29
115 116 1.072331 GCAGAGTGAACCTCCAGGAAA 59.928 52.381 0.00 0.00 41.47 3.13
116 117 0.687354 GCAGAGTGAACCTCCAGGAA 59.313 55.000 0.00 0.00 41.47 3.36
117 118 0.178921 AGCAGAGTGAACCTCCAGGA 60.179 55.000 0.00 0.00 41.47 3.86
118 119 1.561643 TAGCAGAGTGAACCTCCAGG 58.438 55.000 0.00 0.00 41.47 4.45
119 120 3.030291 AGATAGCAGAGTGAACCTCCAG 58.970 50.000 0.00 0.00 41.47 3.86
120 121 3.107402 AGATAGCAGAGTGAACCTCCA 57.893 47.619 0.00 0.00 41.47 3.86
121 122 3.704061 AGAAGATAGCAGAGTGAACCTCC 59.296 47.826 0.00 0.00 41.47 4.30
122 123 4.497340 CGAGAAGATAGCAGAGTGAACCTC 60.497 50.000 0.00 0.00 40.80 3.85
123 124 3.380004 CGAGAAGATAGCAGAGTGAACCT 59.620 47.826 0.00 0.00 0.00 3.50
124 125 3.378742 TCGAGAAGATAGCAGAGTGAACC 59.621 47.826 0.00 0.00 0.00 3.62
125 126 4.624336 TCGAGAAGATAGCAGAGTGAAC 57.376 45.455 0.00 0.00 0.00 3.18
126 127 5.644977 TTTCGAGAAGATAGCAGAGTGAA 57.355 39.130 0.00 0.00 0.00 3.18
127 128 5.644977 TTTTCGAGAAGATAGCAGAGTGA 57.355 39.130 0.00 0.00 0.00 3.41
128 129 6.038985 TCATTTTCGAGAAGATAGCAGAGTG 58.961 40.000 0.00 0.00 0.00 3.51
129 130 6.214191 TCATTTTCGAGAAGATAGCAGAGT 57.786 37.500 0.00 0.00 0.00 3.24
130 131 5.175491 GCTCATTTTCGAGAAGATAGCAGAG 59.825 44.000 12.13 0.00 34.79 3.35
131 132 5.046529 GCTCATTTTCGAGAAGATAGCAGA 58.953 41.667 12.13 0.00 34.79 4.26
132 133 4.807834 TGCTCATTTTCGAGAAGATAGCAG 59.192 41.667 14.47 0.00 34.79 4.24
133 134 4.568359 GTGCTCATTTTCGAGAAGATAGCA 59.432 41.667 14.47 14.47 34.79 3.49
134 135 4.808364 AGTGCTCATTTTCGAGAAGATAGC 59.192 41.667 10.80 10.80 34.79 2.97
135 136 5.172951 CGAGTGCTCATTTTCGAGAAGATAG 59.827 44.000 0.00 0.00 34.79 2.08
136 137 5.037385 CGAGTGCTCATTTTCGAGAAGATA 58.963 41.667 0.00 0.00 34.79 1.98
137 138 3.862267 CGAGTGCTCATTTTCGAGAAGAT 59.138 43.478 0.00 0.00 34.79 2.40
138 139 3.245797 CGAGTGCTCATTTTCGAGAAGA 58.754 45.455 0.00 0.00 34.79 2.87
139 140 2.222685 GCGAGTGCTCATTTTCGAGAAG 60.223 50.000 0.00 0.00 38.39 2.85
140 141 1.726791 GCGAGTGCTCATTTTCGAGAA 59.273 47.619 0.00 0.00 38.39 2.87
141 142 1.336795 TGCGAGTGCTCATTTTCGAGA 60.337 47.619 0.00 0.00 43.34 4.04
142 143 1.070821 TGCGAGTGCTCATTTTCGAG 58.929 50.000 0.00 0.00 43.34 4.04
143 144 0.790207 GTGCGAGTGCTCATTTTCGA 59.210 50.000 0.00 0.00 43.34 3.71
144 145 0.792640 AGTGCGAGTGCTCATTTTCG 59.207 50.000 0.00 0.00 43.34 3.46
145 146 1.800586 TGAGTGCGAGTGCTCATTTTC 59.199 47.619 0.00 0.00 43.34 2.29
146 147 1.882912 TGAGTGCGAGTGCTCATTTT 58.117 45.000 0.00 0.00 43.34 1.82
147 148 1.802960 CTTGAGTGCGAGTGCTCATTT 59.197 47.619 0.00 0.00 40.83 2.32
148 149 1.270518 ACTTGAGTGCGAGTGCTCATT 60.271 47.619 0.00 0.00 40.83 2.57
149 150 0.319728 ACTTGAGTGCGAGTGCTCAT 59.680 50.000 0.00 0.00 40.83 2.90
150 151 0.958822 TACTTGAGTGCGAGTGCTCA 59.041 50.000 0.00 0.00 43.34 4.26
151 152 2.065993 TTACTTGAGTGCGAGTGCTC 57.934 50.000 0.00 0.00 43.34 4.26
152 153 2.289072 ACATTACTTGAGTGCGAGTGCT 60.289 45.455 0.00 0.00 43.34 4.40
153 154 2.069273 ACATTACTTGAGTGCGAGTGC 58.931 47.619 0.00 0.00 39.15 4.40
154 155 3.059884 ACACATTACTTGAGTGCGAGTG 58.940 45.455 0.00 0.00 39.15 3.51
155 156 3.386768 ACACATTACTTGAGTGCGAGT 57.613 42.857 0.00 0.00 41.63 4.18
156 157 5.161358 TCTTACACATTACTTGAGTGCGAG 58.839 41.667 0.00 0.00 36.76 5.03
157 158 5.128992 TCTTACACATTACTTGAGTGCGA 57.871 39.130 0.00 0.00 36.76 5.10
171 172 5.328691 CGTTGCTTCTTTTGTTCTTACACA 58.671 37.500 0.00 0.00 32.98 3.72
172 173 4.733405 CCGTTGCTTCTTTTGTTCTTACAC 59.267 41.667 0.00 0.00 32.98 2.90
174 175 4.916870 ACCGTTGCTTCTTTTGTTCTTAC 58.083 39.130 0.00 0.00 0.00 2.34
178 179 3.765026 TCAACCGTTGCTTCTTTTGTTC 58.235 40.909 6.37 0.00 0.00 3.18
183 184 3.476552 TCTGATCAACCGTTGCTTCTTT 58.523 40.909 6.37 0.00 0.00 2.52
194 195 0.179000 ACTCGGCCATCTGATCAACC 59.821 55.000 2.24 0.00 0.00 3.77
314 315 3.087031 CAGAGTGGGATTTGATTGTGCT 58.913 45.455 0.00 0.00 0.00 4.40
316 317 3.424703 ACCAGAGTGGGATTTGATTGTG 58.575 45.455 0.00 0.00 43.37 3.33
318 319 3.689347 TGACCAGAGTGGGATTTGATTG 58.311 45.455 0.00 0.00 43.37 2.67
321 322 3.874383 TTTGACCAGAGTGGGATTTGA 57.126 42.857 0.00 0.00 43.37 2.69
322 323 4.082026 GGAATTTGACCAGAGTGGGATTTG 60.082 45.833 0.00 0.00 43.37 2.32
323 324 4.089361 GGAATTTGACCAGAGTGGGATTT 58.911 43.478 0.00 0.00 43.37 2.17
325 326 2.922283 AGGAATTTGACCAGAGTGGGAT 59.078 45.455 0.00 0.00 43.37 3.85
326 327 2.348472 AGGAATTTGACCAGAGTGGGA 58.652 47.619 0.00 0.00 43.37 4.37
327 328 2.887151 AGGAATTTGACCAGAGTGGG 57.113 50.000 0.00 0.00 43.37 4.61
328 329 5.302823 AGAAAAAGGAATTTGACCAGAGTGG 59.697 40.000 0.00 0.00 45.02 4.00
329 330 6.396829 AGAAAAAGGAATTTGACCAGAGTG 57.603 37.500 0.00 0.00 0.00 3.51
330 331 8.712228 AATAGAAAAAGGAATTTGACCAGAGT 57.288 30.769 0.00 0.00 0.00 3.24
331 332 9.987272 AAAATAGAAAAAGGAATTTGACCAGAG 57.013 29.630 0.00 0.00 0.00 3.35
334 335 9.898152 ACAAAAATAGAAAAAGGAATTTGACCA 57.102 25.926 0.00 0.00 32.45 4.02
371 372 5.070847 AGAGTGGGATTTGATTGTGCTTTTT 59.929 36.000 0.00 0.00 0.00 1.94
372 373 4.590222 AGAGTGGGATTTGATTGTGCTTTT 59.410 37.500 0.00 0.00 0.00 2.27
373 374 4.021719 CAGAGTGGGATTTGATTGTGCTTT 60.022 41.667 0.00 0.00 0.00 3.51
374 375 3.508793 CAGAGTGGGATTTGATTGTGCTT 59.491 43.478 0.00 0.00 0.00 3.91
375 376 3.087031 CAGAGTGGGATTTGATTGTGCT 58.913 45.455 0.00 0.00 0.00 4.40
376 377 2.165030 CCAGAGTGGGATTTGATTGTGC 59.835 50.000 0.00 0.00 32.67 4.57
377 378 3.424703 ACCAGAGTGGGATTTGATTGTG 58.575 45.455 0.00 0.00 43.37 3.33
378 379 3.074390 TGACCAGAGTGGGATTTGATTGT 59.926 43.478 0.00 0.00 43.37 2.71
379 380 3.689347 TGACCAGAGTGGGATTTGATTG 58.311 45.455 0.00 0.00 43.37 2.67
380 381 4.387026 TTGACCAGAGTGGGATTTGATT 57.613 40.909 0.00 0.00 43.37 2.57
381 382 4.387026 TTTGACCAGAGTGGGATTTGAT 57.613 40.909 0.00 0.00 43.37 2.57
382 383 3.874383 TTTGACCAGAGTGGGATTTGA 57.126 42.857 0.00 0.00 43.37 2.69
383 384 4.082026 GGAATTTGACCAGAGTGGGATTTG 60.082 45.833 0.00 0.00 43.37 2.32
384 385 4.089361 GGAATTTGACCAGAGTGGGATTT 58.911 43.478 0.00 0.00 43.37 2.17
385 386 3.334881 AGGAATTTGACCAGAGTGGGATT 59.665 43.478 0.00 0.00 43.37 3.01
386 387 2.922283 AGGAATTTGACCAGAGTGGGAT 59.078 45.455 0.00 0.00 43.37 3.85
387 388 2.348472 AGGAATTTGACCAGAGTGGGA 58.652 47.619 0.00 0.00 43.37 4.37
388 389 2.887151 AGGAATTTGACCAGAGTGGG 57.113 50.000 0.00 0.00 43.37 4.61
389 390 5.302823 AGAAAAAGGAATTTGACCAGAGTGG 59.697 40.000 0.00 0.00 45.02 4.00
390 391 6.396829 AGAAAAAGGAATTTGACCAGAGTG 57.603 37.500 0.00 0.00 0.00 3.51
391 392 8.712228 AATAGAAAAAGGAATTTGACCAGAGT 57.288 30.769 0.00 0.00 0.00 3.24
392 393 9.987272 AAAATAGAAAAAGGAATTTGACCAGAG 57.013 29.630 0.00 0.00 0.00 3.35
395 396 9.898152 ACAAAAATAGAAAAAGGAATTTGACCA 57.102 25.926 0.00 0.00 32.45 4.02
432 433 8.348285 ACATACTGTATATGGTTGTGCTTTTT 57.652 30.769 0.00 0.00 0.00 1.94
436 437 8.195165 AGATACATACTGTATATGGTTGTGCT 57.805 34.615 0.00 0.00 43.08 4.40
488 491 3.924144 TGGAAATTGGAAAGCCATTTCG 58.076 40.909 0.00 0.00 45.46 3.46
489 492 4.095334 GCATGGAAATTGGAAAGCCATTTC 59.905 41.667 0.00 0.00 45.46 2.17
490 493 4.011698 GCATGGAAATTGGAAAGCCATTT 58.988 39.130 0.00 0.00 45.46 2.32
491 494 3.009253 TGCATGGAAATTGGAAAGCCATT 59.991 39.130 0.00 0.00 45.46 3.16
492 495 2.572556 TGCATGGAAATTGGAAAGCCAT 59.427 40.909 0.00 0.00 45.46 4.40
496 499 3.372822 GTGCATGCATGGAAATTGGAAAG 59.627 43.478 25.64 0.00 0.00 2.62
500 503 2.004017 GTGTGCATGCATGGAAATTGG 58.996 47.619 25.64 0.11 0.00 3.16
526 529 1.450025 GGCCTCCGGTAAAAAGTGAG 58.550 55.000 0.00 0.00 0.00 3.51
558 561 3.382832 AGGCACGAACTCCTCCCG 61.383 66.667 0.00 0.00 0.00 5.14
559 562 2.266055 CAGGCACGAACTCCTCCC 59.734 66.667 0.00 0.00 0.00 4.30
560 563 2.435059 GCAGGCACGAACTCCTCC 60.435 66.667 0.00 0.00 0.00 4.30
561 564 2.811317 CGCAGGCACGAACTCCTC 60.811 66.667 0.00 0.00 34.06 3.71
578 581 4.357947 TGGACAGAGTGACGGCGC 62.358 66.667 6.90 0.00 0.00 6.53
579 582 2.126307 CTGGACAGAGTGACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
586 589 1.203187 TCTTGGGTAGCTGGACAGAGT 60.203 52.381 3.00 0.00 0.00 3.24
603 606 1.626654 CGCGCTGGTTGATTCGTCTT 61.627 55.000 5.56 0.00 0.00 3.01
610 613 0.598680 GCTAGATCGCGCTGGTTGAT 60.599 55.000 5.56 0.00 0.00 2.57
611 614 1.226974 GCTAGATCGCGCTGGTTGA 60.227 57.895 5.56 0.00 0.00 3.18
645 651 2.436539 CGATGTGCCTCGTGTCGTG 61.437 63.158 0.00 0.00 34.00 4.35
646 652 2.126463 CGATGTGCCTCGTGTCGT 60.126 61.111 0.00 0.00 34.00 4.34
647 653 1.406219 CTTCGATGTGCCTCGTGTCG 61.406 60.000 0.00 0.00 39.62 4.35
648 654 1.687494 GCTTCGATGTGCCTCGTGTC 61.687 60.000 0.00 0.00 39.62 3.67
649 655 1.738099 GCTTCGATGTGCCTCGTGT 60.738 57.895 0.00 0.00 39.62 4.49
714 720 3.157680 CGTTGGAGGGGAACACCT 58.842 61.111 0.00 0.00 45.57 4.00
716 722 3.047877 CGCGTTGGAGGGGAACAC 61.048 66.667 0.00 0.00 0.00 3.32
749 791 0.038159 CGTGTTCAGACAGGAGGGAC 60.038 60.000 0.00 0.00 42.71 4.46
757 799 2.279851 CACGGCCGTGTTCAGACA 60.280 61.111 42.92 0.00 40.91 3.41
771 813 4.025401 GCCAAGTTCACCGCCACG 62.025 66.667 0.00 0.00 0.00 4.94
773 815 4.966787 GGGCCAAGTTCACCGCCA 62.967 66.667 4.39 0.00 43.50 5.69
800 846 4.135153 CTGGTCGTGGCCGAGGAG 62.135 72.222 0.00 0.00 45.26 3.69
872 918 0.806492 GAGACGAAATGACGGCCTCC 60.806 60.000 0.00 0.00 42.85 4.30
873 919 0.806492 GGAGACGAAATGACGGCCTC 60.806 60.000 0.00 0.00 42.85 4.70
874 920 1.218316 GGAGACGAAATGACGGCCT 59.782 57.895 0.00 0.00 42.85 5.19
875 921 3.795638 GGAGACGAAATGACGGCC 58.204 61.111 0.00 0.00 42.85 6.13
887 933 3.998672 TCGGGTTGTGGCGGAGAC 61.999 66.667 0.00 0.00 0.00 3.36
888 934 3.998672 GTCGGGTTGTGGCGGAGA 61.999 66.667 0.00 0.00 0.00 3.71
889 935 4.003788 AGTCGGGTTGTGGCGGAG 62.004 66.667 0.00 0.00 0.00 4.63
892 938 4.987811 TATATGCAGTCGGGTTGTGGCG 62.988 54.545 0.00 0.00 0.00 5.69
903 949 7.478667 GCGTTTGCTTATTATGTATATGCAGTC 59.521 37.037 0.00 0.00 45.27 3.51
919 965 3.640992 TGTGCGCGCGTTTGCTTA 61.641 55.556 32.35 2.27 39.65 3.09
947 993 1.295792 GTGTGTGTGTGTACTGGTGG 58.704 55.000 0.00 0.00 0.00 4.61
955 1001 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
974 1022 0.596083 CGATCTAGCTTGCCTCCGTG 60.596 60.000 0.00 0.00 0.00 4.94
976 1024 1.006805 CCGATCTAGCTTGCCTCCG 60.007 63.158 0.00 0.00 0.00 4.63
1386 1484 4.841861 CATAAACCGGCGGCGGGA 62.842 66.667 46.60 33.64 0.00 5.14
1389 1487 2.099446 CAACATAAACCGGCGGCG 59.901 61.111 28.71 26.12 0.00 6.46
1401 1499 2.652530 CGGCAAGGCAAGCAACAT 59.347 55.556 3.65 0.00 0.00 2.71
1426 1524 1.653151 GATCAACCAGTAACGGAGCC 58.347 55.000 0.00 0.00 0.00 4.70
1427 1525 1.066430 TGGATCAACCAGTAACGGAGC 60.066 52.381 0.00 0.00 44.64 4.70
1438 1546 2.167487 GGAGAGACTGACTGGATCAACC 59.833 54.545 0.00 0.00 36.69 3.77
1453 1561 0.911769 AAATGCATGGACGGGAGAGA 59.088 50.000 0.00 0.00 0.00 3.10
1465 1573 4.456566 GCAAATTGACCAGGAAAAATGCAT 59.543 37.500 0.00 0.00 0.00 3.96
1466 1574 3.814283 GCAAATTGACCAGGAAAAATGCA 59.186 39.130 0.00 0.00 0.00 3.96
1475 1589 1.619654 TCCAGTGCAAATTGACCAGG 58.380 50.000 0.00 0.00 0.00 4.45
1492 1606 4.524053 AGGGACGGAGACAAAATTAATCC 58.476 43.478 0.00 0.00 0.00 3.01
1509 1655 2.955477 ATCGTCTAACGGAAAGGGAC 57.045 50.000 0.00 0.00 42.81 4.46
1519 1665 7.491372 TGTTCTCCATTGACATTATCGTCTAAC 59.509 37.037 0.00 0.00 36.82 2.34
1525 1671 7.134815 GGAAATGTTCTCCATTGACATTATCG 58.865 38.462 1.86 0.00 43.04 2.92
1528 1674 6.252233 TGGGAAATGTTCTCCATTGACATTA 58.748 36.000 1.86 0.00 43.04 1.90
1540 1686 0.678048 GAGCCGCTGGGAAATGTTCT 60.678 55.000 0.00 0.00 34.06 3.01
1563 1709 2.847133 CGACAACGAGTAGCTAAAGAGC 59.153 50.000 0.00 0.00 45.10 4.09
1569 1715 0.169672 GCCACGACAACGAGTAGCTA 59.830 55.000 0.00 0.00 42.66 3.32
1578 1724 1.626654 CGATGACAGGCCACGACAAC 61.627 60.000 5.01 0.00 0.00 3.32
1600 1753 1.906574 CAGGGTTGACCAGGCTAGTAA 59.093 52.381 2.12 0.00 43.89 2.24
1607 1760 0.327924 TACATGCAGGGTTGACCAGG 59.672 55.000 2.31 0.00 43.89 4.45
1643 1796 3.736100 TTGGCATTGGCACGCGAG 61.736 61.111 15.93 5.97 43.71 5.03
1675 1828 2.318908 TGGAGTTGGAAAATGCAGCTT 58.681 42.857 0.00 0.00 37.32 3.74
1687 1840 0.881118 CAAACCGTGGATGGAGTTGG 59.119 55.000 0.00 0.00 0.00 3.77
1700 1858 1.657181 GCGTGTTGGAAGCAAACCG 60.657 57.895 0.00 0.00 0.00 4.44
1704 1862 1.007502 GCATGCGTGTTGGAAGCAA 60.008 52.632 0.00 0.00 42.69 3.91
1715 1873 4.708177 AGTATGGATTTAGAAGCATGCGT 58.292 39.130 13.01 9.49 0.00 5.24
1716 1874 5.928839 AGTAGTATGGATTTAGAAGCATGCG 59.071 40.000 13.01 0.00 0.00 4.73
1717 1875 6.708054 ACAGTAGTATGGATTTAGAAGCATGC 59.292 38.462 10.51 10.51 0.00 4.06
1718 1876 8.668510 AACAGTAGTATGGATTTAGAAGCATG 57.331 34.615 0.00 0.00 0.00 4.06
1730 1888 7.194112 TCATGGATTTGAACAGTAGTATGGA 57.806 36.000 0.00 0.00 0.00 3.41
1744 1985 7.751732 TCGTGTTAAAGAGAATCATGGATTTG 58.248 34.615 0.00 0.00 37.82 2.32
1751 1992 9.599866 TGATTGTATCGTGTTAAAGAGAATCAT 57.400 29.630 0.00 0.00 37.82 2.45
1759 2000 7.750458 AGCATTTGTGATTGTATCGTGTTAAAG 59.250 33.333 0.00 0.00 0.00 1.85
1836 2081 2.443387 GTGAATGCATGTGCGTGTATG 58.557 47.619 0.00 0.00 45.83 2.39
1837 2082 1.401552 GGTGAATGCATGTGCGTGTAT 59.598 47.619 0.00 0.00 45.83 2.29
1838 2083 0.801872 GGTGAATGCATGTGCGTGTA 59.198 50.000 0.00 0.00 45.83 2.90
1839 2084 1.580942 GGTGAATGCATGTGCGTGT 59.419 52.632 0.00 0.00 45.83 4.49
1840 2085 1.153978 GGGTGAATGCATGTGCGTG 60.154 57.895 0.00 0.00 45.83 5.34
1841 2086 0.035534 TAGGGTGAATGCATGTGCGT 60.036 50.000 0.00 0.00 45.83 5.24
1842 2087 1.002142 CATAGGGTGAATGCATGTGCG 60.002 52.381 0.00 0.00 45.83 5.34
1843 2088 2.787601 CATAGGGTGAATGCATGTGC 57.212 50.000 0.00 0.00 42.50 4.57
1850 2095 1.093972 TGCGTTGCATAGGGTGAATG 58.906 50.000 0.00 0.00 31.71 2.67
1852 2097 0.036164 AGTGCGTTGCATAGGGTGAA 59.964 50.000 0.00 0.00 41.91 3.18
1853 2098 0.391130 GAGTGCGTTGCATAGGGTGA 60.391 55.000 0.00 0.00 41.91 4.02
1857 2102 0.108186 TCAGGAGTGCGTTGCATAGG 60.108 55.000 0.00 0.00 41.91 2.57
1860 2106 0.251354 ATCTCAGGAGTGCGTTGCAT 59.749 50.000 0.00 0.00 41.91 3.96
1862 2108 2.231215 ATATCTCAGGAGTGCGTTGC 57.769 50.000 0.00 0.00 0.00 4.17
1867 2113 3.551863 CCGACTCAATATCTCAGGAGTGC 60.552 52.174 0.00 0.00 40.48 4.40
1868 2114 3.551863 GCCGACTCAATATCTCAGGAGTG 60.552 52.174 0.00 0.00 40.48 3.51
1871 2117 2.362397 GTGCCGACTCAATATCTCAGGA 59.638 50.000 0.00 0.00 0.00 3.86
1876 2122 3.827008 ATGTGTGCCGACTCAATATCT 57.173 42.857 0.00 0.00 0.00 1.98
1879 2125 4.068599 TCAAAATGTGTGCCGACTCAATA 58.931 39.130 0.00 0.00 0.00 1.90
1880 2126 2.884012 TCAAAATGTGTGCCGACTCAAT 59.116 40.909 0.00 0.00 0.00 2.57
1881 2127 2.293170 TCAAAATGTGTGCCGACTCAA 58.707 42.857 0.00 0.00 0.00 3.02
1883 2129 2.290641 ACTTCAAAATGTGTGCCGACTC 59.709 45.455 0.00 0.00 0.00 3.36
1884 2130 2.290641 GACTTCAAAATGTGTGCCGACT 59.709 45.455 0.00 0.00 0.00 4.18
1888 2135 3.988379 TGAGACTTCAAAATGTGTGCC 57.012 42.857 0.00 0.00 0.00 5.01
1960 2207 6.183359 GCGCATTTGATTCTGAAACTTTACAG 60.183 38.462 0.30 0.00 35.72 2.74
2032 2279 3.243068 GCGCGGAAATGTTCTCCATTATT 60.243 43.478 8.83 0.00 43.04 1.40
2033 2280 2.290641 GCGCGGAAATGTTCTCCATTAT 59.709 45.455 8.83 0.00 43.04 1.28
2034 2281 1.668751 GCGCGGAAATGTTCTCCATTA 59.331 47.619 8.83 0.00 43.04 1.90
2204 2467 4.331717 ACGGTTGGTATGAATTTAGAAGCG 59.668 41.667 0.00 0.00 38.43 4.68
2205 2468 5.585047 AGACGGTTGGTATGAATTTAGAAGC 59.415 40.000 0.00 0.00 0.00 3.86
2206 2469 8.712285 TTAGACGGTTGGTATGAATTTAGAAG 57.288 34.615 0.00 0.00 0.00 2.85
2235 2498 8.892723 TGCGTCAAATACTCAAATAGAATCATT 58.107 29.630 0.00 0.00 0.00 2.57
2249 2568 3.955771 ACGTGTTTTGCGTCAAATACT 57.044 38.095 5.97 0.00 38.23 2.12
2250 2569 6.448879 CGAAATACGTGTTTTGCGTCAAATAC 60.449 38.462 11.77 7.55 42.85 1.89
2251 2570 5.560751 CGAAATACGTGTTTTGCGTCAAATA 59.439 36.000 11.77 0.00 42.85 1.40
2252 2571 4.377445 CGAAATACGTGTTTTGCGTCAAAT 59.623 37.500 11.77 0.00 42.85 2.32
2253 2572 3.719840 CGAAATACGTGTTTTGCGTCAAA 59.280 39.130 11.77 1.63 42.85 2.69
2254 2573 3.001026 TCGAAATACGTGTTTTGCGTCAA 59.999 39.130 17.59 0.68 42.85 3.18
2255 2574 2.538861 TCGAAATACGTGTTTTGCGTCA 59.461 40.909 17.59 1.01 42.85 4.35
2256 2575 2.892199 GTCGAAATACGTGTTTTGCGTC 59.108 45.455 17.59 9.40 42.85 5.19
2257 2576 2.284684 TGTCGAAATACGTGTTTTGCGT 59.715 40.909 17.59 0.00 45.11 5.24
2258 2577 2.893837 TGTCGAAATACGTGTTTTGCG 58.106 42.857 17.59 14.22 43.13 4.85
2259 2578 3.868835 ACTGTCGAAATACGTGTTTTGC 58.131 40.909 17.59 13.57 43.13 3.68
2260 2579 5.073192 TGACTGTCGAAATACGTGTTTTG 57.927 39.130 16.58 16.58 43.13 2.44
2261 2580 5.721876 TTGACTGTCGAAATACGTGTTTT 57.278 34.783 11.77 4.93 43.13 2.43
2262 2581 5.292589 AGTTTGACTGTCGAAATACGTGTTT 59.707 36.000 10.27 10.27 43.13 2.83
2263 2582 4.807304 AGTTTGACTGTCGAAATACGTGTT 59.193 37.500 11.91 0.00 43.13 3.32
2264 2583 4.365723 AGTTTGACTGTCGAAATACGTGT 58.634 39.130 11.91 0.00 43.13 4.49
2265 2584 4.966850 AGTTTGACTGTCGAAATACGTG 57.033 40.909 11.91 0.00 43.13 4.49
2266 2585 6.471519 GCTATAGTTTGACTGTCGAAATACGT 59.528 38.462 17.39 7.94 43.13 3.57
2267 2586 6.691818 AGCTATAGTTTGACTGTCGAAATACG 59.308 38.462 17.39 13.19 44.09 3.06
2268 2587 7.988904 AGCTATAGTTTGACTGTCGAAATAC 57.011 36.000 17.39 7.79 0.00 1.89
2269 2588 8.033038 ACAAGCTATAGTTTGACTGTCGAAATA 58.967 33.333 29.33 17.36 38.31 1.40
2270 2589 6.874134 ACAAGCTATAGTTTGACTGTCGAAAT 59.126 34.615 29.33 14.39 38.31 2.17
2271 2590 6.220930 ACAAGCTATAGTTTGACTGTCGAAA 58.779 36.000 29.33 6.67 38.31 3.46
2272 2591 5.779922 ACAAGCTATAGTTTGACTGTCGAA 58.220 37.500 29.33 6.37 38.31 3.71
2273 2592 5.386958 ACAAGCTATAGTTTGACTGTCGA 57.613 39.130 29.33 0.00 38.31 4.20
2274 2593 7.757097 AATACAAGCTATAGTTTGACTGTCG 57.243 36.000 29.33 7.49 38.31 4.35
2321 2640 5.413833 GTCCCAATCATAGCCAAGATACATG 59.586 44.000 0.00 0.00 0.00 3.21
2327 2646 4.314522 TTTGTCCCAATCATAGCCAAGA 57.685 40.909 0.00 0.00 0.00 3.02
2370 2689 2.284203 CGCAAGCGTACGAGCAATA 58.716 52.632 21.65 0.00 40.15 1.90
2387 2712 4.984161 AGCAAGAAAATGAATCAACCAACG 59.016 37.500 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.