>input_sequence_80173
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--------------------------------------ATGGGGAACTGCTTCCGGTCCGGCGGCAAACCCCCAAGTCCA
CCGGCCAAAGGGAAGCCGTTGCCGTCGTCGTC---------GAGCGGCGGCGGCGGCGGGAGGGAGGAGGAGTCGTTGGA
GCCGTACCGCGGGTGGCCGAGCG------CGGGCGGGCGTGTCCTGGACGCGCCGAGGCTGCGGGTGTTCACGCTGGCGG
AGCTGCGGGCGGTGACGCGCGGGTTCAAGCCGGAGATGGTGCTCGGGGAGGGCG----GCTTCGGGCGGGTCTACAAGGG
CTGGGTCGACGAGCGCACCCTCAACCCGGCCAAGAGCTCCGCCGGCGTCGTCGTCGCCGTCAAGAGGCTCAACGCCGAGA
GCGTCCAGGGCCTGCAGGAGTGGCAGGTGAGCTCATCTCATCCTCCCGCCGCCGGTTTATGTTGCTTGCCTTGCCGGCCT
CTCGGC----------TCCGTTACTGGTTGA-------------------------------------------------
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>chr6A_1_TraesCS6A01G206200
AGTTTATGCACCATGTGACACACATGGTAAGCAATCCAAACATTTCAGAAATAGTTTTGCGCATCAGCTAGCGTGCGCCC
GCCGAATAGTTTCTTGCGCGCACCATGCCTAACTTTTTCCTGGAGGTTCACTCTGCTATCTTCTCGAAAATGAGCACTCG
CACTCAAGTAATGTGTAAGAACAAAAGAAGCAACGGTTGATCAGATGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGCTC
TGGTCCGAAAGGGCGTGGGTTCAAATCCCACTCTGGTCAAATTCCTTTTTCTATTTTTGTTTTCCTAAAAAAAAAGCACA
ATCAAATCCCACTCTGGTCAAATTCCTTTTTCTATTTTTGTTTTCCTAAAAAAAAAGCACAATCAAATCCCACTCTGGTC
AAATTCCTTTTTCTATTTTTGTTTTCCTAAAAAAAAAGCACAACCATATACAG--TATGTATCTTAAGTTGATGGAGTTT
GAGTTAGCCACGAAATGGCTTTCCAATTTCCATGCATGCACACGAGTACTCACTTTTTACCGGAGGCCGTCCGTCCGGCG
CGGGAGGAGTTCGTGCCTGCGCGCCGTCACTCTGTCCAGCTACCCAAGACGAAT---CAACCAGCGCGATCTAGCGAGGC
GCACCAACCCCACGACACGAGGCACATCGAAGCAGCAGCCAGGAGCACTTGCACACTTGCACTGCCCAGCCAGCGCGCCA
GGTGTTC-----------------CCCTCCAACGCGCACGTCACCGGCC-------------------TCGTCCCTCCTG
TCTGAACACGGCCGTGGCGGTGA----ACTTGGCCCCTACTGCATCTCCTCGGCCACGACCAGTTCACTTCCCTGGCGCC
ATCGACCTCGCGTCCTCGCCTTGTGTCAACGTCGGCCGGAGGCCGTCATTTCGTCTCCGCCACAACCCGACTGCATATAC
ATAATAAGCAAACGCGCGCACACGATCACCTACCACCAGTACACACACACA--CACGCACGCAC----------------
-----GGAGGCAAGCTAGATCGGCCAG----------CATGGGGAACTGCTTCCGGTCCGGCGGCAAACCCCCAAGTCCA
CCGGCCAAAGGGAAGCCGTTGCCGTCGTCGTC---------GAGCGGCGGCGGCGGCGGGAGGGAGGAGGAGTCGTTGGA
GCCGTACCGCGGGTGGCCGAGCG------CGGGCGGGCGTGTCCTGGACGCGCCGAGGCTGCGGGTGTTCACGCTGGCGG
AGCTGCGGGCGGTGACGCGCGGGTTCAAGCCGGAGATGGTGCTCGGGGAGGGCG----GCTTCGGGCGGGTCTACAAGGG
CTGGGTCGACGAGCGCACCCTCAACCCGGCCAAGAGCTCCGCCGGCGTCGTCGTCGCCGTCAAGAGGCTCAACGCCGAGA
GCGTCCAGGGCCTGCAGGAGTGGCAGGTGAGCTCATCTCATCCTCCCGCCGCCGGTTTATGTTGCTTGCCTTGCCGGCCT
CTCGGC----------TCCGTTACTGGTTGATCCAGTCAGTCTCTCCCGTCCAT------GCATTTTTCCTGGTCAATTT
GCACTGGATTAATTTTGTCT--------------------------------CCGTCCCTTTCCGTTAGACGATAATGTC
AATGGAGAACATTTCCCAGCGGCTCACCGCTCTTTAGCTACTCGTTGTCGTGGCC-------TGTCATCGGTTTACTAGC
CTGGTCAACCCTGCATGTACCTAGCTGATAAGTAACTCGCGTGCCAATGCCAACACCAACAAGCAACAAGCTGCATTTTC
CAACTCCAT-----CCACGGTTTGCTTCCAACACGCATGCTTCTAAATCCATACTAC-----------------------
------------------------------------------------------------TGTTCAAATCCATGATTCTC
TTTAACACGA----TACAATCACAAATGCTTACTGCATACACGCACATGCATTCACTGTATGGAACGCAAATGCTTATTG
CATACACGCACATGCATTCACCC-TATGCAACGCACTCCTGAGATATTGA-GTCGGCACACATTTTGAAGTCTCATCAAA
TTTTGAAAAAAAAATACACATGAACATTGAAGTGTATACTAAATTTCTGTAAAGTTTCAGAATCAAATGCGCTGGCAGGG
AAGAAAAATCACATCCCTTTCTATGTGATAATAATGTCAATAATGGAGAACATTTCCGC------------GCTTCAGCT
AGTCGTTGTCTTGGCCTGTCGGTGTACAAGTCTAGTCAACCCTGTGTGTAACCTAGCTGATAAGTAATTCGCGTGCCAAT
GCCAA-GAAGCAACAGGCTGCACTTTTCAACTCCATGTGCTTGTTGGTTTGCTTCCAACA---TGCCGCTTCTAAATTCA
TACCAACCGTCTAAAACAATGATTCTA-----------------------------------------------------
---TTTGAGTATTTGACGCAAAACACGTATTTCGACAGTCAAACTATAGCTTGTATTTTGAATTGTAGGTGCTAGTATGC
ATGTATCTTGGCTATGATTGGGACAAAACATGCAATGCCTGAAAATTCTATTGCTCG------TACGCTTGCGTTGGTTG
ATTCATTTTCTTGCTCAATTTGCACTTCATTAACTTTGTTTGCCCCGA
>chr5A_159
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------------------------------------------------------------------------------CG
CACTCAAGTAACATATAAAAACAGAAG-AGCAACAGCTGATCAGATGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGCTC
TGGTCCGAAAGGGCGTGGGTTCAAATCCCACTCTGGTC-AATTTCC----------TTTTTTTGTTTTTGAC--------
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---------------------TTCGATTTCCATGCATGCACACGAGTAGTCACTCACCGGAG------------------
----------------------GCCGTCGCTCTGTCCAGCTACCCGAGACGACGAGGCAAGCAGCCGGAAATTCCCGGCC
GGTG----------------------------------------------------------------------------
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----------------------------------------------------------------ACCCAACTGCATATAC
ATAA---CCAAACGCGCGCACACGATCACCTAACAGGCTA----ACACACA--CGCGCACGAAAACAGCCAGAAGAAGAA
GA---GGAGGGAAGCTAGATCAGCTCAGCTCAGCTGTCATGGGGAACTGCTTCCGGTCCGGCGGCAAACCCACAAGCCCT
CCGGCCAAAGGGAAGCCGTCGCCGTCGTCGTCCACCAGGGAGAGCGGCGGCGGCGGCGGGAGGGAGGAGGAGTCCTTGGA
GTCATACCGCCGGTGGCCGAGCG------CGGGCGGGCGTGTCCTGGACGCGCCGAGGCTGCGGGTGTTCACGCTGGCGG
AGCTGCGGGCGGTCACGCGCGGGTTCAAGCCGGAGATGGTGCTCGGGGAGGGCGGCTAGCTTCGGGCGGGTCTACAAGGG
CTGGGTCGACGACCGCACCCTCAACCCGGCCAAGAGCTCCGCCGGCGTCGTCGTCGCCGTCAAGAGGCTCAACGCCGAGA
GCGTCCAGGGCCTCCAGGAGTGGCAGGTGAGCTCATCTCATCCCCCGGCCGCCGGTTTCTGTTGCTTGCCTTGCCTGCCT
CCCTCGCGGCTCCATTCCCATTCCGAGTTGATTCAGTCAGCCTCTCCCATCCCATCCATGGCATTTCTACTGGTCAATTT
GCACTTCATTAATTTTGTCTCCGGGTTGCACTAGCAGCTGGGAAGGAGAAACCCATGCCTTTCCATTAGATGACAATGTC
AATGGCGAACATTTCCCTGCGGCTCACCACTCTTGAGCTAGTCCTTGTCGTGGCCTGTCAAGTGTCATCGGTGTACTAGT
CTCGTCAACCCTGCATGTACCTAGCTGATAAGTAATTCGCCTGCCAATTCCAACA-------------------------
-------------------------------------TGCTTCTAAACTCATACTCCCTTCATAAAGAAATGTAAGAGTG
TGTAGATCATTAAAATAGTGATCTAAACACTCTTATATTTGTTTACAGAGGGAGTGGTATTGTTTAAATCCGTGATTCTT
TTTAACATGG----TACTAAGTGCT--------TACGTATATCCACATGCATTCATACCC--------------------
-----------ATGAACACACACATGTACACCCTACATCTGTGAACATTCCATGATTCAGTCGGTCTCGCCTCCCATCCA
TGCATTTTTCCTGGTCAATATGCACTTCATTATTTTCGTCTCCGGGTTGGGTTGCGCTAGA-------------------
---AAAAACCCGTCCCCTTTCTAGGTGATAATAATGTC---AATGGAGAACATTTCCATGCGTCTCACCATGCTTCAGCT
AGTCGTTGTCTTGGCCTGTCGGTGTACAAGTCTAGTCAACCGTGTCTGT-ACCTAGCTGATAAGTAATTCGCGTGCCATT
GCCAA-CAAGCAACGAGCTGCTTTTTTCAACTCCATGTGCTTGTTTGTGTGCTTGCAACA---TGC---TTCTAAATTCA
TACCAACTGTCTGAATCCATGATTATG-----------------------------------------------------
---TTTA--------------------------CACAGTCAAACTGTAGCTGGTATTTTGAAATGTAGGTGCTAGTATGT
GTGTACCTTGGCTATGATCGGGTCCATGCCACTTTGCTATC--AATTCCATTGCTCGTATGCTTATGCTTGGGTTGGTTG
ATTCATTTTCTTGGTCAATTTGCACTTCACTAACTTTGTTTGCCC---
>chr4D_188
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---------------------------AAGCATCAGTTGATCAGATGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGCTC
TGGTCCGAAAGGGCGTGGGTTCAAATCCCACTCTGGTCAAATTTCC----------TTTTTTTTCTAAAAAAAAGGAAAA
AAAGA---------------------------------------------------------------------------
----------------------------AAAAGAAACGCACAACCATATACAGTATATGTATCTTAAGTTGATGGAGTTT
GACTTAGCCA-----TGGTTTTTCAATTTCCATGCATGCACACGAG----------------------------------
---------------------------------------------------ACGAAGCAACCAGCGCGATCACCAC----
-CACCAACCC-----CACGAGGCACATCGAAGCAGCAGCCAGGAGCACTTGCACACTTGCACTGACCAGCCAACGCGCCC
GACCGCCCGTCAGCGCCAGGTGTTCCCTCCAATGCGCACGTCACCGGCCGGGAATTGCCCCTCGACCCTCCTCCCTCCCG
TCTGAACACGGCTGCGGCGGTGAACTCACTTGGCCCCTACTGCATGTCCTCGGCCACGACCAGTTCACTTCCCTGGCGCC
ATCGACCTCGCGTCCTCGCCTTGTCAACG--------------------------TCGGCCACAGCCCAACTGCATATAC
ATAA---GCAAACGCGCGCACACGATCACCTAACACCAGTGCACACACGCGCGCGCGCACGGAAACAGCCAGAAGAAGAA
GAAGAGGAGGCAAGCTAGATCGGCTAG----------CATGGGGAACTGCCTGCGGTCCGGCGGCAAGCCCCCAAGTCCA
CCGG---------------------------CCACCAGGGAGAGCGGCGGCGGCGGCGGGAGGGAGGAGGAGTCGTTGGC
GTCGTACCGCGGGTGGCCGAGCGCGGGCTCGGGCGGGCGTGTCCTGGACGCGCCGAGGCTGCGGGTGTTCACGCTGGCGG
AGCTGCGGGCGGTGACGCGCGGGTTCAAGCCGGAGATGGTGCTCGGGGAGGGCG----GCTTCGGGCGGGTCTACAAGGG
CTGGGTCGACGACCGCACCCTCCACCCGGCCAAGAGCTCCGCCGGCGTCGTCGTCGCCGTCAAGAGGCTCAACGCCGAGA
GCGTCCAGGGCCTGCAGGAGTGGCAGGTGAGCTCATCTCATCCCCCGGCCGCCGGTTTCTGTTGCTTGCCTTGCCTGCCT
CTCT--CGGCTCCATTTCCCTTCCGAGTTGATCCAGTCAGCCTCTCTCGTCCCATCCATGGCATTTTTACTGGTCAATTT
GCAGTTGATTAATTTTGTCTCCGAGTTGCAATAGCAACAGGGAAGGAGAAACCCATCCCTTTCCCTGCG-----------
------GAATATTTCCCTGCGGCTCACCACTCTTGAGCTACTCCTTGTCGTGGCCTGTCAAGTGTCATCGGTGTACTAGT
CTGGTCAACCCTGCATGTACCTAGCTGATAAGTAATTCGCGTGCCATTGCCAC------CAAGCAACGAGCTGCATTTTT
CAACTCCATTCCATCCATGGTCTGCTTCCAAC----ATGCTTCTAAACCCATACTAC-----------------------
------------------------------------------------------------TGTTTAAATCCGTGATTCTT
TTTAACACGTGCGGTACAATCTCAAATGCTTACTACATACACGCACATGCATTCACATCT--------------------
-----------ATGAACACACGC-TGTACAACCTACACCTATGAACACCCCGTCAGCACACATTTTGAAGTCTCATAAAA
TTTTGAAAAAAATACACAC--GAACATTGAAGTGTATACTAAATTTGTGTAAAGTTTCATGATCAAATGCGCTGGCAGGG
AAGAAAAATCACATCCCTTTCTACTCG----------------------------CCGC------------GCTTCAGCT
AGTCGTTGTCTTGGCCTGTCGGTGTACAAGTCTAGTCAACCCTGTGTGTAACCTAGCTGATAAGTAATTCGCGTGCCAAT
GCCAAAGAAGCAACAGGCTGCACTTTCCAGCTCCATGTGCTTGTTGGTTTGCTTCCAACATGCTGC---TTCTAAATTCA
TACCAACTGTCTAAATCTATGATTCTAATCCCGCAAAAAAAAAATCCATGATTATATTTGAGTATTTGACGAAAAAACAC
GATTTTG--------------------------GACAGTCAAACTATAGCTTGTATTTTGAATTGTAGGTGCTAGTATGT
ATGTACCTTGGCTATGATTGGGACAAAACATGCAATGCCTGAAAATCCCTTTTCTCG------TACGCTTGGGTTGGTTG
ATTCGTTTTCCTGCTCAATTTGCACTTCAATAACTTTGTTTGC-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----------SS-S---S----S----------S---------------------------------------------
-------------------------------------------S-SSSSSSSSSSS--S----S----------S-S-S-
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S-------------------------------------------
--S-------SSSSS---S---S-------------------------S-----SSSSSSS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------S----------------S------SS------------------SS-SS-S-
----------SSSSS-------------------------------------------------S-------S------S
-SSSSS--------------------------S-------------------------------------S-------S-
------------S-S------------------------------S----------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S-----------
----SSS-------------------------S-------S-------------S------S-S----------------
------------------------S-------------------------------------------------------
-------------------S------------------------------------------------------------
-S------------------------------------------------------------------------------
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------------S-------------------------------------------------------------------
-------------------------------------------S--S-----------S----------------S----
---SSS-------------S--S-SS--------------S-----------SS--------------S-----------
-----S------------------------------------------------S---------S-----S--S------
-----S-----------S----------S-----S--------S----------------------------S------S
-----------------------------------S-------------------SSSS--------S-----------S
-----------------S---S----------SSSS-----------S--------------------------------
----------------------------------------------------------------S------S-------S
---------S-----------S------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---S-SS---S---S-S----SS--S----S--SSS-SS----S---------------------S---
------------S---------------------------------S---------------------------------
-----------------------S--------------SSS---------------------------------------
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------------------------------------------------------------------SSS-----------
-------S-------S-S--------------------------------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------S
-----S------------------------------------------S----------------------S--------
-----------------------------S---------------SSS
>forward_98
------------------------------------------------------------------------------CC
GCCGAATAGTTTCTTGCG--------------------------------------------------------------
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>reverse_2086
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-----ACGCACATGCATTCACCCTA-------------------------------------------------------
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