Multiple sequence alignment - TraesCS6A01G196900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G196900 chr6A 100.000 2291 0 0 1 2291 290234280 290236570 0.000000e+00 4231.0
1 TraesCS6A01G196900 chr6A 93.333 150 10 0 1 150 344853037 344853186 2.960000e-54 222.0
2 TraesCS6A01G196900 chr6A 88.824 170 17 2 1 168 217645191 217645022 8.290000e-50 207.0
3 TraesCS6A01G196900 chr6D 97.569 1522 20 9 528 2042 203005436 203003925 0.000000e+00 2590.0
4 TraesCS6A01G196900 chr6D 95.273 275 8 2 270 543 203007378 203007108 4.520000e-117 431.0
5 TraesCS6A01G196900 chr2A 94.839 155 8 0 1 155 174784594 174784440 2.270000e-60 243.0
6 TraesCS6A01G196900 chr2A 92.308 156 12 0 1 156 49430441 49430596 2.960000e-54 222.0
7 TraesCS6A01G196900 chr2A 92.763 152 11 0 1 152 373019043 373019194 1.070000e-53 220.0
8 TraesCS6A01G196900 chr1D 88.525 183 19 2 1 182 468312408 468312227 1.070000e-53 220.0
9 TraesCS6A01G196900 chr1A 92.763 152 11 0 1 152 208402336 208402487 1.070000e-53 220.0
10 TraesCS6A01G196900 chr4D 92.208 154 12 0 1 154 322861220 322861067 3.830000e-53 219.0
11 TraesCS6A01G196900 chr4D 92.208 154 12 0 1 154 415104143 415103990 3.830000e-53 219.0
12 TraesCS6A01G196900 chr4A 100.000 29 0 0 151 179 494034630 494034602 1.000000e-03 54.7
13 TraesCS6A01G196900 chr5B 100.000 28 0 0 150 177 78476001 78475974 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G196900 chr6A 290234280 290236570 2290 False 4231.0 4231 100.000 1 2291 1 chr6A.!!$F1 2290
1 TraesCS6A01G196900 chr6D 203003925 203007378 3453 True 1510.5 2590 96.421 270 2042 2 chr6D.!!$R1 1772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.103937 TTGGCCAAAACCGAGCTTTG 59.896 50.0 17.98 0.0 34.24 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 3824 0.03601 CTCGCCTCCAACACCATCTT 60.036 55.0 0.0 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.653287 TGAGTCTACAACCTAATAAATGAAGTG 57.347 33.333 0.00 0.00 0.00 3.16
47 48 9.871238 GAGTCTACAACCTAATAAATGAAGTGA 57.129 33.333 0.00 0.00 0.00 3.41
50 51 9.109393 TCTACAACCTAATAAATGAAGTGATGC 57.891 33.333 0.00 0.00 0.00 3.91
51 52 7.701539 ACAACCTAATAAATGAAGTGATGCA 57.298 32.000 0.00 0.00 0.00 3.96
52 53 8.297470 ACAACCTAATAAATGAAGTGATGCAT 57.703 30.769 0.00 0.00 0.00 3.96
53 54 8.192774 ACAACCTAATAAATGAAGTGATGCATG 58.807 33.333 2.46 0.00 0.00 4.06
54 55 8.407832 CAACCTAATAAATGAAGTGATGCATGA 58.592 33.333 2.46 0.00 0.00 3.07
55 56 8.701908 ACCTAATAAATGAAGTGATGCATGAT 57.298 30.769 2.46 0.00 0.00 2.45
56 57 9.797642 ACCTAATAAATGAAGTGATGCATGATA 57.202 29.630 2.46 0.00 0.00 2.15
60 61 9.740239 AATAAATGAAGTGATGCATGATACAAC 57.260 29.630 2.46 0.14 0.00 3.32
61 62 6.762702 AATGAAGTGATGCATGATACAACA 57.237 33.333 2.46 5.59 0.00 3.33
62 63 5.550232 TGAAGTGATGCATGATACAACAC 57.450 39.130 2.46 3.90 40.11 3.32
63 64 5.002516 TGAAGTGATGCATGATACAACACA 58.997 37.500 2.46 0.00 41.67 3.72
64 65 5.648960 TGAAGTGATGCATGATACAACACAT 59.351 36.000 2.46 0.00 41.67 3.21
65 66 6.822676 TGAAGTGATGCATGATACAACACATA 59.177 34.615 2.46 0.00 41.67 2.29
66 67 7.499895 TGAAGTGATGCATGATACAACACATAT 59.500 33.333 2.46 0.00 41.67 1.78
67 68 7.198306 AGTGATGCATGATACAACACATATG 57.802 36.000 2.46 0.00 41.67 1.78
68 69 6.769341 AGTGATGCATGATACAACACATATGT 59.231 34.615 2.46 1.41 41.67 2.29
85 86 8.421784 ACACATATGTTACTACTCATTGTAGGG 58.578 37.037 5.37 0.00 43.76 3.53
95 96 7.598759 CTACTCATTGTAGGGGTAGTAACAT 57.401 40.000 0.00 0.00 43.63 2.71
96 97 8.701908 CTACTCATTGTAGGGGTAGTAACATA 57.298 38.462 0.00 0.00 43.63 2.29
97 98 7.983166 ACTCATTGTAGGGGTAGTAACATAA 57.017 36.000 0.00 0.00 0.00 1.90
98 99 8.383374 ACTCATTGTAGGGGTAGTAACATAAA 57.617 34.615 0.00 0.00 0.00 1.40
99 100 8.999895 ACTCATTGTAGGGGTAGTAACATAAAT 58.000 33.333 0.00 0.00 0.00 1.40
100 101 9.847224 CTCATTGTAGGGGTAGTAACATAAATT 57.153 33.333 0.00 0.00 0.00 1.82
129 130 7.366847 ACATATGCATGTTACTCCTCTAAGT 57.633 36.000 10.16 0.00 42.98 2.24
130 131 7.796054 ACATATGCATGTTACTCCTCTAAGTT 58.204 34.615 10.16 0.00 42.98 2.66
131 132 8.924303 ACATATGCATGTTACTCCTCTAAGTTA 58.076 33.333 10.16 0.00 42.98 2.24
132 133 9.197694 CATATGCATGTTACTCCTCTAAGTTAC 57.802 37.037 10.16 0.00 31.19 2.50
133 134 6.852420 TGCATGTTACTCCTCTAAGTTACT 57.148 37.500 0.00 0.00 31.69 2.24
134 135 7.949690 TGCATGTTACTCCTCTAAGTTACTA 57.050 36.000 0.00 0.00 31.69 1.82
135 136 7.769220 TGCATGTTACTCCTCTAAGTTACTAC 58.231 38.462 0.00 0.00 31.69 2.73
136 137 7.147949 TGCATGTTACTCCTCTAAGTTACTACC 60.148 40.741 0.00 0.00 31.69 3.18
137 138 7.683945 GCATGTTACTCCTCTAAGTTACTACCC 60.684 44.444 0.00 0.00 31.69 3.69
138 139 6.793478 TGTTACTCCTCTAAGTTACTACCCA 58.207 40.000 0.00 0.00 31.69 4.51
139 140 6.660949 TGTTACTCCTCTAAGTTACTACCCAC 59.339 42.308 0.00 0.00 31.69 4.61
140 141 5.533333 ACTCCTCTAAGTTACTACCCACT 57.467 43.478 0.00 0.00 0.00 4.00
141 142 6.649041 ACTCCTCTAAGTTACTACCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
142 143 7.223472 ACTCCTCTAAGTTACTACCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
143 144 7.061688 ACTCCTCTAAGTTACTACCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
144 145 7.092083 ACTCCTCTAAGTTACTACCCACTATGA 60.092 40.741 0.00 0.00 0.00 2.15
145 146 7.059156 TCCTCTAAGTTACTACCCACTATGAC 58.941 42.308 0.00 0.00 0.00 3.06
146 147 7.061688 CCTCTAAGTTACTACCCACTATGACT 58.938 42.308 0.00 0.00 0.00 3.41
147 148 8.216423 CCTCTAAGTTACTACCCACTATGACTA 58.784 40.741 0.00 0.00 0.00 2.59
148 149 9.275398 CTCTAAGTTACTACCCACTATGACTAG 57.725 40.741 0.00 0.00 0.00 2.57
149 150 8.776119 TCTAAGTTACTACCCACTATGACTAGT 58.224 37.037 0.00 0.00 38.79 2.57
150 151 7.878547 AAGTTACTACCCACTATGACTAGTC 57.121 40.000 16.32 16.32 35.99 2.59
151 152 7.210618 AGTTACTACCCACTATGACTAGTCT 57.789 40.000 23.01 11.45 35.99 3.24
152 153 8.329346 AGTTACTACCCACTATGACTAGTCTA 57.671 38.462 23.01 10.48 35.99 2.59
153 154 8.776119 AGTTACTACCCACTATGACTAGTCTAA 58.224 37.037 23.01 10.46 35.99 2.10
154 155 9.054922 GTTACTACCCACTATGACTAGTCTAAG 57.945 40.741 23.01 20.18 35.99 2.18
155 156 7.210618 ACTACCCACTATGACTAGTCTAAGT 57.789 40.000 23.01 20.75 35.99 2.24
156 157 7.641249 ACTACCCACTATGACTAGTCTAAGTT 58.359 38.462 23.01 13.04 35.99 2.66
157 158 8.776119 ACTACCCACTATGACTAGTCTAAGTTA 58.224 37.037 23.01 13.39 35.99 2.24
158 159 7.878547 ACCCACTATGACTAGTCTAAGTTAC 57.121 40.000 23.01 0.00 35.99 2.50
159 160 6.832900 ACCCACTATGACTAGTCTAAGTTACC 59.167 42.308 23.01 0.00 35.99 2.85
160 161 7.061688 CCCACTATGACTAGTCTAAGTTACCT 58.938 42.308 23.01 2.64 35.99 3.08
161 162 7.229106 CCCACTATGACTAGTCTAAGTTACCTC 59.771 44.444 23.01 0.00 35.99 3.85
162 163 7.229106 CCACTATGACTAGTCTAAGTTACCTCC 59.771 44.444 23.01 0.00 35.99 4.30
163 164 7.774157 CACTATGACTAGTCTAAGTTACCTCCA 59.226 40.741 23.01 0.00 35.99 3.86
164 165 7.774625 ACTATGACTAGTCTAAGTTACCTCCAC 59.225 40.741 23.01 0.00 32.56 4.02
165 166 6.137104 TGACTAGTCTAAGTTACCTCCACT 57.863 41.667 23.01 0.00 0.00 4.00
166 167 7.262990 TGACTAGTCTAAGTTACCTCCACTA 57.737 40.000 23.01 0.00 0.00 2.74
167 168 7.870027 TGACTAGTCTAAGTTACCTCCACTAT 58.130 38.462 23.01 0.00 0.00 2.12
168 169 7.774157 TGACTAGTCTAAGTTACCTCCACTATG 59.226 40.741 23.01 0.00 0.00 2.23
169 170 7.061688 ACTAGTCTAAGTTACCTCCACTATGG 58.938 42.308 0.00 0.00 39.43 2.74
170 171 4.650131 AGTCTAAGTTACCTCCACTATGGC 59.350 45.833 0.00 0.00 37.47 4.40
171 172 4.650131 GTCTAAGTTACCTCCACTATGGCT 59.350 45.833 0.00 0.00 37.47 4.75
172 173 5.832060 GTCTAAGTTACCTCCACTATGGCTA 59.168 44.000 0.00 0.00 37.47 3.93
173 174 6.016108 GTCTAAGTTACCTCCACTATGGCTAG 60.016 46.154 0.00 0.00 37.47 3.42
174 175 2.966516 AGTTACCTCCACTATGGCTAGC 59.033 50.000 6.04 6.04 37.47 3.42
175 176 2.011122 TACCTCCACTATGGCTAGCC 57.989 55.000 27.71 27.71 37.47 3.93
176 177 0.266152 ACCTCCACTATGGCTAGCCT 59.734 55.000 33.07 20.80 37.47 4.58
177 178 1.503784 ACCTCCACTATGGCTAGCCTA 59.496 52.381 33.07 20.21 37.47 3.93
178 179 2.090719 ACCTCCACTATGGCTAGCCTAA 60.091 50.000 33.07 20.02 37.47 2.69
179 180 3.177228 CCTCCACTATGGCTAGCCTAAT 58.823 50.000 33.07 21.74 37.47 1.73
180 181 4.202792 ACCTCCACTATGGCTAGCCTAATA 60.203 45.833 33.07 21.70 37.47 0.98
181 182 4.965532 CCTCCACTATGGCTAGCCTAATAT 59.034 45.833 33.07 20.68 37.47 1.28
182 183 6.136857 CCTCCACTATGGCTAGCCTAATATA 58.863 44.000 33.07 20.69 37.47 0.86
183 184 6.041069 CCTCCACTATGGCTAGCCTAATATAC 59.959 46.154 33.07 5.85 37.47 1.47
184 185 6.499436 TCCACTATGGCTAGCCTAATATACA 58.501 40.000 33.07 12.01 37.47 2.29
185 186 6.380274 TCCACTATGGCTAGCCTAATATACAC 59.620 42.308 33.07 4.32 37.47 2.90
186 187 6.154534 CCACTATGGCTAGCCTAATATACACA 59.845 42.308 33.07 10.44 36.94 3.72
187 188 7.310423 CCACTATGGCTAGCCTAATATACACAA 60.310 40.741 33.07 9.89 36.94 3.33
188 189 8.260818 CACTATGGCTAGCCTAATATACACAAT 58.739 37.037 33.07 16.30 36.94 2.71
189 190 8.826765 ACTATGGCTAGCCTAATATACACAATT 58.173 33.333 33.07 4.42 36.94 2.32
210 211 8.914011 ACAATTAATTAGAGAAAAGGTATGGGC 58.086 33.333 0.00 0.00 0.00 5.36
211 212 8.360390 CAATTAATTAGAGAAAAGGTATGGGCC 58.640 37.037 0.00 0.00 0.00 5.80
212 213 3.945640 TTAGAGAAAAGGTATGGGCCC 57.054 47.619 17.59 17.59 0.00 5.80
213 214 0.927029 AGAGAAAAGGTATGGGCCCC 59.073 55.000 22.27 2.97 0.00 5.80
214 215 0.106167 GAGAAAAGGTATGGGCCCCC 60.106 60.000 22.27 14.17 0.00 5.40
228 229 3.621805 CCCCCGTTGGCCAAAACC 61.622 66.667 22.47 7.18 0.00 3.27
229 230 3.984749 CCCCGTTGGCCAAAACCG 61.985 66.667 22.47 19.53 0.00 4.44
230 231 2.907917 CCCGTTGGCCAAAACCGA 60.908 61.111 22.47 0.00 0.00 4.69
231 232 2.642700 CCGTTGGCCAAAACCGAG 59.357 61.111 22.47 10.01 0.00 4.63
232 233 2.050442 CGTTGGCCAAAACCGAGC 60.050 61.111 22.47 4.67 0.00 5.03
233 234 2.551912 CGTTGGCCAAAACCGAGCT 61.552 57.895 22.47 0.00 0.00 4.09
234 235 1.739667 GTTGGCCAAAACCGAGCTT 59.260 52.632 22.47 0.00 0.00 3.74
235 236 0.104120 GTTGGCCAAAACCGAGCTTT 59.896 50.000 22.47 0.00 0.00 3.51
236 237 0.103937 TTGGCCAAAACCGAGCTTTG 59.896 50.000 17.98 0.00 34.24 2.77
237 238 0.753479 TGGCCAAAACCGAGCTTTGA 60.753 50.000 0.61 0.00 36.12 2.69
238 239 0.387565 GGCCAAAACCGAGCTTTGAA 59.612 50.000 0.00 0.00 36.12 2.69
239 240 1.202475 GGCCAAAACCGAGCTTTGAAA 60.202 47.619 0.00 0.00 36.12 2.69
240 241 2.545731 GCCAAAACCGAGCTTTGAAAA 58.454 42.857 0.00 0.00 36.12 2.29
241 242 3.130633 GCCAAAACCGAGCTTTGAAAAT 58.869 40.909 0.00 0.00 36.12 1.82
242 243 3.559655 GCCAAAACCGAGCTTTGAAAATT 59.440 39.130 0.00 0.00 36.12 1.82
243 244 4.552572 GCCAAAACCGAGCTTTGAAAATTG 60.553 41.667 0.00 0.00 36.12 2.32
244 245 4.517287 CAAAACCGAGCTTTGAAAATTGC 58.483 39.130 0.00 0.00 36.12 3.56
245 246 3.733443 AACCGAGCTTTGAAAATTGCT 57.267 38.095 0.00 0.00 38.40 3.91
246 247 3.288809 ACCGAGCTTTGAAAATTGCTC 57.711 42.857 7.38 7.38 44.10 4.26
247 248 2.029918 ACCGAGCTTTGAAAATTGCTCC 60.030 45.455 10.74 0.00 44.44 4.70
248 249 2.030007 CCGAGCTTTGAAAATTGCTCCA 60.030 45.455 10.74 0.00 44.44 3.86
249 250 3.552684 CCGAGCTTTGAAAATTGCTCCAA 60.553 43.478 10.74 0.00 44.44 3.53
250 251 3.426525 CGAGCTTTGAAAATTGCTCCAAC 59.573 43.478 10.74 0.00 44.44 3.77
251 252 4.625028 GAGCTTTGAAAATTGCTCCAACT 58.375 39.130 6.42 0.00 42.79 3.16
252 253 5.027293 AGCTTTGAAAATTGCTCCAACTT 57.973 34.783 0.00 0.00 31.92 2.66
253 254 5.430886 AGCTTTGAAAATTGCTCCAACTTT 58.569 33.333 0.00 0.00 31.92 2.66
254 255 6.581712 AGCTTTGAAAATTGCTCCAACTTTA 58.418 32.000 0.00 0.00 31.92 1.85
255 256 7.219322 AGCTTTGAAAATTGCTCCAACTTTAT 58.781 30.769 0.00 0.00 31.92 1.40
256 257 8.367156 AGCTTTGAAAATTGCTCCAACTTTATA 58.633 29.630 0.00 0.00 31.92 0.98
257 258 8.435430 GCTTTGAAAATTGCTCCAACTTTATAC 58.565 33.333 0.00 0.00 0.00 1.47
258 259 8.825667 TTTGAAAATTGCTCCAACTTTATACC 57.174 30.769 0.00 0.00 0.00 2.73
259 260 6.616947 TGAAAATTGCTCCAACTTTATACCG 58.383 36.000 0.00 0.00 0.00 4.02
260 261 6.207810 TGAAAATTGCTCCAACTTTATACCGT 59.792 34.615 0.00 0.00 0.00 4.83
261 262 6.584185 AAATTGCTCCAACTTTATACCGTT 57.416 33.333 0.00 0.00 0.00 4.44
262 263 5.560966 ATTGCTCCAACTTTATACCGTTG 57.439 39.130 6.41 6.41 40.03 4.10
307 308 1.956477 CCCGCAAAAATAGATGGAGGG 59.044 52.381 0.00 0.00 32.26 4.30
308 309 2.422803 CCCGCAAAAATAGATGGAGGGA 60.423 50.000 0.00 0.00 40.58 4.20
311 312 3.433598 CGCAAAAATAGATGGAGGGAGGA 60.434 47.826 0.00 0.00 0.00 3.71
312 313 3.885901 GCAAAAATAGATGGAGGGAGGAC 59.114 47.826 0.00 0.00 0.00 3.85
313 314 4.130118 CAAAAATAGATGGAGGGAGGACG 58.870 47.826 0.00 0.00 0.00 4.79
314 315 2.016905 AATAGATGGAGGGAGGACGG 57.983 55.000 0.00 0.00 0.00 4.79
315 316 0.543174 ATAGATGGAGGGAGGACGGC 60.543 60.000 0.00 0.00 0.00 5.68
355 356 7.625828 TCAGAACTGTCGTAGAGAAATCATA 57.374 36.000 1.73 0.00 36.95 2.15
417 419 1.533625 TGTGGAAACTGCAGTATGGC 58.466 50.000 22.01 9.56 35.86 4.40
419 421 1.740025 GTGGAAACTGCAGTATGGCTC 59.260 52.381 22.01 11.43 35.86 4.70
543 545 0.999406 CTATCCCGTTGCAACTCACG 59.001 55.000 26.09 14.47 0.00 4.35
544 546 0.390603 TATCCCGTTGCAACTCACGG 60.391 55.000 26.09 22.26 44.50 4.94
546 548 4.025401 CCGTTGCAACTCACGGGC 62.025 66.667 26.09 0.00 41.55 6.13
547 549 3.276091 CGTTGCAACTCACGGGCA 61.276 61.111 26.09 0.00 35.41 5.36
548 550 2.616330 CGTTGCAACTCACGGGCAT 61.616 57.895 26.09 0.00 37.39 4.40
549 551 1.295357 CGTTGCAACTCACGGGCATA 61.295 55.000 26.09 0.00 37.39 3.14
550 552 1.094785 GTTGCAACTCACGGGCATAT 58.905 50.000 22.36 0.00 37.39 1.78
570 572 8.044060 GCATATTTGCTAGCCATTAATAGTGA 57.956 34.615 13.29 0.00 45.77 3.41
571 573 8.680903 GCATATTTGCTAGCCATTAATAGTGAT 58.319 33.333 13.29 0.00 45.77 3.06
603 2291 2.690497 TGGTCTTTCAAAATCGTTGGCA 59.310 40.909 0.00 0.00 0.00 4.92
604 2292 3.320541 TGGTCTTTCAAAATCGTTGGCAT 59.679 39.130 0.00 0.00 0.00 4.40
650 2344 0.106918 TTCCCAAGCGGACTGTTTGT 60.107 50.000 9.66 0.00 41.83 2.83
694 2388 6.072673 GGAACGAAGAAATGACCAGTTACATT 60.073 38.462 0.00 0.00 38.18 2.71
696 2390 7.972832 ACGAAGAAATGACCAGTTACATTTA 57.027 32.000 0.00 0.00 43.62 1.40
737 2431 9.603921 AAACATCATTCAAGAGTTTCATGTTTT 57.396 25.926 0.00 0.00 39.16 2.43
825 2520 8.387354 CACATGTATAGACAACGAAAAGCAATA 58.613 33.333 0.00 0.00 39.59 1.90
885 2580 6.682746 CAGAACAAGCGGTCTATCTATGTAT 58.317 40.000 0.00 0.00 0.00 2.29
931 2626 1.138568 CTGGGAGAAGATGAGGGCAT 58.861 55.000 0.00 0.00 37.47 4.40
1001 2696 7.557719 CAGGGTATGTCAAAATTACTCTCCAAT 59.442 37.037 0.00 0.00 0.00 3.16
1655 3350 2.011947 ACGATCACACATTGCATCCAG 58.988 47.619 0.00 0.00 0.00 3.86
1931 3626 1.263484 GTGCTGATGAATGCAGATCCG 59.737 52.381 0.00 0.00 40.06 4.18
1943 3638 2.496871 TGCAGATCCGGCAATTCAAAAT 59.503 40.909 7.16 0.00 38.54 1.82
1968 3663 0.460987 GGACATGAAGGCACTCCGAG 60.461 60.000 0.00 0.00 38.49 4.63
2042 3737 0.907486 CTGGACTGGATCTTGAGGCA 59.093 55.000 0.00 0.00 0.00 4.75
2043 3738 1.280133 CTGGACTGGATCTTGAGGCAA 59.720 52.381 0.00 0.00 0.00 4.52
2044 3739 1.280133 TGGACTGGATCTTGAGGCAAG 59.720 52.381 0.84 0.84 42.25 4.01
2045 3740 1.407989 GGACTGGATCTTGAGGCAAGG 60.408 57.143 7.27 0.00 41.33 3.61
2046 3741 0.622665 ACTGGATCTTGAGGCAAGGG 59.377 55.000 7.27 0.00 41.33 3.95
2047 3742 0.914644 CTGGATCTTGAGGCAAGGGA 59.085 55.000 7.27 0.00 41.33 4.20
2048 3743 1.493871 CTGGATCTTGAGGCAAGGGAT 59.506 52.381 7.27 0.00 41.33 3.85
2049 3744 1.213678 TGGATCTTGAGGCAAGGGATG 59.786 52.381 7.27 0.00 41.33 3.51
2058 3753 4.023137 CAAGGGATGCCTTGGTGG 57.977 61.111 32.42 11.90 42.25 4.61
2059 3754 1.077265 CAAGGGATGCCTTGGTGGT 59.923 57.895 32.42 2.32 42.25 4.16
2060 3755 1.077265 AAGGGATGCCTTGGTGGTG 59.923 57.895 18.95 0.00 38.35 4.17
2061 3756 3.070576 GGGATGCCTTGGTGGTGC 61.071 66.667 0.00 0.00 38.35 5.01
2062 3757 2.283101 GGATGCCTTGGTGGTGCA 60.283 61.111 0.00 0.00 39.68 4.57
2064 3759 1.514087 GATGCCTTGGTGGTGCATG 59.486 57.895 0.32 0.00 45.20 4.06
2065 3760 2.567564 GATGCCTTGGTGGTGCATGC 62.568 60.000 11.82 11.82 45.20 4.06
2066 3761 2.993264 GCCTTGGTGGTGCATGCT 60.993 61.111 20.33 0.00 38.35 3.79
2067 3762 2.967397 CCTTGGTGGTGCATGCTG 59.033 61.111 20.33 0.00 0.00 4.41
2068 3763 1.604308 CCTTGGTGGTGCATGCTGA 60.604 57.895 20.33 0.00 0.00 4.26
2069 3764 1.592400 CCTTGGTGGTGCATGCTGAG 61.592 60.000 20.33 5.97 0.00 3.35
2070 3765 1.592400 CTTGGTGGTGCATGCTGAGG 61.592 60.000 20.33 0.00 0.00 3.86
2071 3766 2.066700 TTGGTGGTGCATGCTGAGGA 62.067 55.000 20.33 0.00 0.00 3.71
2072 3767 2.042831 GGTGGTGCATGCTGAGGAC 61.043 63.158 20.33 7.95 0.00 3.85
2073 3768 2.046988 TGGTGCATGCTGAGGACG 60.047 61.111 20.33 0.00 0.00 4.79
2074 3769 2.046892 GGTGCATGCTGAGGACGT 60.047 61.111 20.33 0.00 0.00 4.34
2075 3770 2.103042 GGTGCATGCTGAGGACGTC 61.103 63.158 20.33 7.13 0.00 4.34
2076 3771 1.374631 GTGCATGCTGAGGACGTCA 60.375 57.895 20.33 0.00 0.00 4.35
2077 3772 1.374631 TGCATGCTGAGGACGTCAC 60.375 57.895 20.33 11.25 0.00 3.67
2078 3773 2.103042 GCATGCTGAGGACGTCACC 61.103 63.158 18.91 8.66 0.00 4.02
2079 3774 1.293179 CATGCTGAGGACGTCACCA 59.707 57.895 18.91 12.93 0.00 4.17
2080 3775 0.107993 CATGCTGAGGACGTCACCAT 60.108 55.000 18.91 8.61 32.48 3.55
2081 3776 0.107993 ATGCTGAGGACGTCACCATG 60.108 55.000 18.91 9.07 31.31 3.66
2082 3777 1.293498 GCTGAGGACGTCACCATGT 59.707 57.895 18.91 0.00 0.00 3.21
2083 3778 0.737715 GCTGAGGACGTCACCATGTC 60.738 60.000 18.91 4.32 37.77 3.06
2095 3790 3.091318 CCATGTCCTGGTGCATCTC 57.909 57.895 0.00 0.00 40.49 2.75
2096 3791 0.253894 CCATGTCCTGGTGCATCTCA 59.746 55.000 0.00 0.00 40.49 3.27
2097 3792 1.340308 CCATGTCCTGGTGCATCTCAA 60.340 52.381 0.00 0.00 40.49 3.02
2098 3793 2.014857 CATGTCCTGGTGCATCTCAAG 58.985 52.381 0.00 0.00 0.00 3.02
2099 3794 0.325933 TGTCCTGGTGCATCTCAAGG 59.674 55.000 0.00 0.00 0.00 3.61
2100 3795 1.028868 GTCCTGGTGCATCTCAAGGC 61.029 60.000 0.00 0.00 0.00 4.35
2101 3796 2.110967 CCTGGTGCATCTCAAGGCG 61.111 63.158 0.00 0.00 34.08 5.52
2102 3797 1.078918 CTGGTGCATCTCAAGGCGA 60.079 57.895 0.00 0.00 34.08 5.54
2103 3798 0.674581 CTGGTGCATCTCAAGGCGAA 60.675 55.000 0.00 0.00 34.08 4.70
2104 3799 0.674581 TGGTGCATCTCAAGGCGAAG 60.675 55.000 0.00 0.00 34.08 3.79
2105 3800 1.372087 GGTGCATCTCAAGGCGAAGG 61.372 60.000 0.00 0.00 34.08 3.46
2106 3801 0.391661 GTGCATCTCAAGGCGAAGGA 60.392 55.000 0.00 0.00 34.08 3.36
2107 3802 0.107993 TGCATCTCAAGGCGAAGGAG 60.108 55.000 0.00 0.00 34.08 3.69
2108 3803 1.435408 GCATCTCAAGGCGAAGGAGC 61.435 60.000 0.00 0.00 0.00 4.70
2109 3804 0.177604 CATCTCAAGGCGAAGGAGCT 59.822 55.000 0.00 0.00 37.29 4.09
2110 3805 0.908198 ATCTCAAGGCGAAGGAGCTT 59.092 50.000 0.00 0.00 37.29 3.74
2111 3806 0.247736 TCTCAAGGCGAAGGAGCTTC 59.752 55.000 0.00 0.00 37.16 3.86
2112 3807 0.742635 CTCAAGGCGAAGGAGCTTCC 60.743 60.000 0.00 0.00 37.20 3.46
2122 3817 2.593128 GGAGCTTCCTACCGTTCCT 58.407 57.895 0.00 0.00 32.53 3.36
2123 3818 0.460722 GGAGCTTCCTACCGTTCCTC 59.539 60.000 0.00 0.00 32.53 3.71
2124 3819 0.460722 GAGCTTCCTACCGTTCCTCC 59.539 60.000 0.00 0.00 0.00 4.30
2125 3820 0.041386 AGCTTCCTACCGTTCCTCCT 59.959 55.000 0.00 0.00 0.00 3.69
2126 3821 0.903236 GCTTCCTACCGTTCCTCCTT 59.097 55.000 0.00 0.00 0.00 3.36
2127 3822 1.405661 GCTTCCTACCGTTCCTCCTTG 60.406 57.143 0.00 0.00 0.00 3.61
2128 3823 0.611714 TTCCTACCGTTCCTCCTTGC 59.388 55.000 0.00 0.00 0.00 4.01
2129 3824 0.543410 TCCTACCGTTCCTCCTTGCA 60.543 55.000 0.00 0.00 0.00 4.08
2130 3825 0.323629 CCTACCGTTCCTCCTTGCAA 59.676 55.000 0.00 0.00 0.00 4.08
2131 3826 1.676014 CCTACCGTTCCTCCTTGCAAG 60.676 57.143 19.93 19.93 0.00 4.01
2132 3827 1.275291 CTACCGTTCCTCCTTGCAAGA 59.725 52.381 28.05 12.59 0.00 3.02
2133 3828 0.693049 ACCGTTCCTCCTTGCAAGAT 59.307 50.000 28.05 0.00 0.00 2.40
2134 3829 1.089920 CCGTTCCTCCTTGCAAGATG 58.910 55.000 28.05 17.98 0.00 2.90
2135 3830 1.089920 CGTTCCTCCTTGCAAGATGG 58.910 55.000 28.05 25.16 0.00 3.51
2136 3831 1.611673 CGTTCCTCCTTGCAAGATGGT 60.612 52.381 28.05 0.00 0.00 3.55
2137 3832 1.815003 GTTCCTCCTTGCAAGATGGTG 59.185 52.381 28.05 12.57 0.00 4.17
2138 3833 1.067295 TCCTCCTTGCAAGATGGTGT 58.933 50.000 28.05 0.00 0.00 4.16
2139 3834 1.425066 TCCTCCTTGCAAGATGGTGTT 59.575 47.619 28.05 0.00 0.00 3.32
2140 3835 1.542915 CCTCCTTGCAAGATGGTGTTG 59.457 52.381 28.05 8.33 0.00 3.33
2141 3836 1.542915 CTCCTTGCAAGATGGTGTTGG 59.457 52.381 28.05 8.63 0.00 3.77
2142 3837 1.144708 TCCTTGCAAGATGGTGTTGGA 59.855 47.619 28.05 11.01 0.00 3.53
2143 3838 1.542915 CCTTGCAAGATGGTGTTGGAG 59.457 52.381 28.05 2.25 0.00 3.86
2144 3839 1.542915 CTTGCAAGATGGTGTTGGAGG 59.457 52.381 22.31 0.00 0.00 4.30
2145 3840 0.895100 TGCAAGATGGTGTTGGAGGC 60.895 55.000 0.00 0.00 0.00 4.70
2146 3841 1.926511 GCAAGATGGTGTTGGAGGCG 61.927 60.000 0.00 0.00 0.00 5.52
2147 3842 0.321564 CAAGATGGTGTTGGAGGCGA 60.322 55.000 0.00 0.00 0.00 5.54
2148 3843 0.036010 AAGATGGTGTTGGAGGCGAG 60.036 55.000 0.00 0.00 0.00 5.03
2149 3844 2.045926 ATGGTGTTGGAGGCGAGC 60.046 61.111 0.00 0.00 0.00 5.03
2150 3845 2.803155 GATGGTGTTGGAGGCGAGCA 62.803 60.000 0.00 0.00 0.00 4.26
2151 3846 2.281484 GGTGTTGGAGGCGAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
2152 3847 2.328099 GGTGTTGGAGGCGAGCAAG 61.328 63.158 0.00 0.00 0.00 4.01
2153 3848 2.032528 TGTTGGAGGCGAGCAAGG 59.967 61.111 0.00 0.00 0.00 3.61
2154 3849 3.435186 GTTGGAGGCGAGCAAGGC 61.435 66.667 0.00 0.00 0.00 4.35
2163 3858 2.694760 CGAGCAAGGCCTTGGCTTC 61.695 63.158 39.51 25.79 45.21 3.86
2164 3859 1.604593 GAGCAAGGCCTTGGCTTCA 60.605 57.895 39.51 0.00 45.21 3.02
2165 3860 1.871126 GAGCAAGGCCTTGGCTTCAC 61.871 60.000 39.51 24.79 45.21 3.18
2166 3861 2.202395 GCAAGGCCTTGGCTTCACA 61.202 57.895 39.51 0.00 45.21 3.58
2167 3862 1.962144 CAAGGCCTTGGCTTCACAG 59.038 57.895 34.08 8.42 45.21 3.66
2168 3863 1.228675 AAGGCCTTGGCTTCACAGG 60.229 57.895 19.73 0.00 45.21 4.00
2169 3864 2.011617 AAGGCCTTGGCTTCACAGGT 62.012 55.000 19.73 0.00 45.21 4.00
2170 3865 2.270986 GGCCTTGGCTTCACAGGTG 61.271 63.158 11.71 0.00 0.00 4.00
2171 3866 2.270986 GCCTTGGCTTCACAGGTGG 61.271 63.158 4.11 0.00 0.00 4.61
2172 3867 1.151450 CCTTGGCTTCACAGGTGGT 59.849 57.895 0.00 0.00 0.00 4.16
2173 3868 0.890996 CCTTGGCTTCACAGGTGGTC 60.891 60.000 0.00 0.00 0.00 4.02
2174 3869 0.179020 CTTGGCTTCACAGGTGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
2175 3870 0.257328 TTGGCTTCACAGGTGGTCAA 59.743 50.000 0.00 0.00 0.00 3.18
2176 3871 0.257328 TGGCTTCACAGGTGGTCAAA 59.743 50.000 0.00 0.00 0.00 2.69
2177 3872 0.668535 GGCTTCACAGGTGGTCAAAC 59.331 55.000 0.00 0.00 0.00 2.93
2178 3873 1.680338 GCTTCACAGGTGGTCAAACT 58.320 50.000 0.00 0.00 0.00 2.66
2179 3874 2.486548 GGCTTCACAGGTGGTCAAACTA 60.487 50.000 0.00 0.00 0.00 2.24
2180 3875 2.808543 GCTTCACAGGTGGTCAAACTAG 59.191 50.000 0.00 0.00 0.00 2.57
2181 3876 3.494398 GCTTCACAGGTGGTCAAACTAGA 60.494 47.826 0.00 0.00 0.00 2.43
2182 3877 4.804261 GCTTCACAGGTGGTCAAACTAGAT 60.804 45.833 0.00 0.00 0.00 1.98
2183 3878 4.974645 TCACAGGTGGTCAAACTAGATT 57.025 40.909 0.00 0.00 0.00 2.40
2184 3879 4.641396 TCACAGGTGGTCAAACTAGATTG 58.359 43.478 6.40 6.40 0.00 2.67
2185 3880 3.753272 CACAGGTGGTCAAACTAGATTGG 59.247 47.826 12.29 0.00 0.00 3.16
2186 3881 3.244911 ACAGGTGGTCAAACTAGATTGGG 60.245 47.826 12.29 0.00 0.00 4.12
2187 3882 2.092323 GGTGGTCAAACTAGATTGGGC 58.908 52.381 12.29 6.35 0.00 5.36
2188 3883 1.737793 GTGGTCAAACTAGATTGGGCG 59.262 52.381 12.29 0.00 0.00 6.13
2189 3884 1.339631 TGGTCAAACTAGATTGGGCGG 60.340 52.381 12.29 0.00 0.00 6.13
2190 3885 1.339727 GGTCAAACTAGATTGGGCGGT 60.340 52.381 12.29 0.00 0.00 5.68
2191 3886 2.433436 GTCAAACTAGATTGGGCGGTT 58.567 47.619 12.29 0.00 0.00 4.44
2192 3887 2.418976 GTCAAACTAGATTGGGCGGTTC 59.581 50.000 12.29 0.00 0.00 3.62
2193 3888 2.304761 TCAAACTAGATTGGGCGGTTCT 59.695 45.455 12.29 0.00 0.00 3.01
2194 3889 3.516300 TCAAACTAGATTGGGCGGTTCTA 59.484 43.478 12.29 0.00 0.00 2.10
2195 3890 4.163458 TCAAACTAGATTGGGCGGTTCTAT 59.837 41.667 12.29 0.00 0.00 1.98
2196 3891 4.338379 AACTAGATTGGGCGGTTCTATC 57.662 45.455 0.00 0.00 0.00 2.08
2197 3892 2.633481 ACTAGATTGGGCGGTTCTATCC 59.367 50.000 0.00 0.00 0.00 2.59
2198 3893 1.507140 AGATTGGGCGGTTCTATCCA 58.493 50.000 0.00 0.00 0.00 3.41
2199 3894 1.417890 AGATTGGGCGGTTCTATCCAG 59.582 52.381 0.00 0.00 0.00 3.86
2200 3895 0.474184 ATTGGGCGGTTCTATCCAGG 59.526 55.000 0.00 0.00 0.00 4.45
2201 3896 2.111251 GGGCGGTTCTATCCAGGC 59.889 66.667 0.00 0.00 0.00 4.85
2202 3897 2.444256 GGGCGGTTCTATCCAGGCT 61.444 63.158 0.00 0.00 0.00 4.58
2203 3898 1.119574 GGGCGGTTCTATCCAGGCTA 61.120 60.000 0.00 0.00 0.00 3.93
2204 3899 0.977395 GGCGGTTCTATCCAGGCTAT 59.023 55.000 0.00 0.00 0.00 2.97
2205 3900 1.348036 GGCGGTTCTATCCAGGCTATT 59.652 52.381 0.00 0.00 0.00 1.73
2206 3901 2.224548 GGCGGTTCTATCCAGGCTATTT 60.225 50.000 0.00 0.00 0.00 1.40
2207 3902 3.477530 GCGGTTCTATCCAGGCTATTTT 58.522 45.455 0.00 0.00 0.00 1.82
2208 3903 3.251004 GCGGTTCTATCCAGGCTATTTTG 59.749 47.826 0.00 0.00 0.00 2.44
2209 3904 3.815401 CGGTTCTATCCAGGCTATTTTGG 59.185 47.826 0.00 0.00 35.74 3.28
2210 3905 4.686122 CGGTTCTATCCAGGCTATTTTGGT 60.686 45.833 0.00 0.00 35.89 3.67
2211 3906 4.822350 GGTTCTATCCAGGCTATTTTGGTC 59.178 45.833 0.00 0.00 35.89 4.02
2212 3907 4.336889 TCTATCCAGGCTATTTTGGTCG 57.663 45.455 0.00 0.00 35.89 4.79
2213 3908 2.348411 ATCCAGGCTATTTTGGTCGG 57.652 50.000 0.00 0.00 35.89 4.79
2214 3909 0.254747 TCCAGGCTATTTTGGTCGGG 59.745 55.000 0.00 0.00 35.89 5.14
2215 3910 0.751643 CCAGGCTATTTTGGTCGGGG 60.752 60.000 0.00 0.00 0.00 5.73
2216 3911 1.076995 AGGCTATTTTGGTCGGGGC 60.077 57.895 0.00 0.00 0.00 5.80
2217 3912 2.125326 GGCTATTTTGGTCGGGGCC 61.125 63.158 0.00 0.00 0.00 5.80
2218 3913 1.379309 GCTATTTTGGTCGGGGCCA 60.379 57.895 4.39 0.00 36.62 5.36
2219 3914 0.968393 GCTATTTTGGTCGGGGCCAA 60.968 55.000 4.39 0.00 45.83 4.52
2220 3915 0.815095 CTATTTTGGTCGGGGCCAAC 59.185 55.000 4.39 2.23 46.98 3.77
2221 3916 0.406361 TATTTTGGTCGGGGCCAACT 59.594 50.000 4.39 0.00 46.98 3.16
2222 3917 0.406361 ATTTTGGTCGGGGCCAACTA 59.594 50.000 4.39 0.00 46.98 2.24
2223 3918 0.250989 TTTTGGTCGGGGCCAACTAG 60.251 55.000 4.39 0.00 46.98 2.57
2224 3919 2.757980 TTTGGTCGGGGCCAACTAGC 62.758 60.000 4.39 0.00 46.98 3.42
2225 3920 3.400054 GGTCGGGGCCAACTAGCT 61.400 66.667 4.39 0.00 0.00 3.32
2226 3921 2.669240 GTCGGGGCCAACTAGCTT 59.331 61.111 4.39 0.00 0.00 3.74
2227 3922 1.619807 GGTCGGGGCCAACTAGCTTA 61.620 60.000 4.39 0.00 0.00 3.09
2228 3923 0.179081 GTCGGGGCCAACTAGCTTAG 60.179 60.000 4.39 0.00 0.00 2.18
2229 3924 0.324923 TCGGGGCCAACTAGCTTAGA 60.325 55.000 4.39 0.00 0.00 2.10
2230 3925 0.759346 CGGGGCCAACTAGCTTAGAT 59.241 55.000 4.39 0.00 0.00 1.98
2231 3926 1.968493 CGGGGCCAACTAGCTTAGATA 59.032 52.381 4.39 0.00 0.00 1.98
2232 3927 2.028930 CGGGGCCAACTAGCTTAGATAG 60.029 54.545 4.39 2.68 0.00 2.08
2233 3928 2.973406 GGGGCCAACTAGCTTAGATAGT 59.027 50.000 4.39 4.13 34.96 2.12
2234 3929 3.007074 GGGGCCAACTAGCTTAGATAGTC 59.993 52.174 10.72 0.00 32.29 2.59
2235 3930 3.305471 GGGCCAACTAGCTTAGATAGTCG 60.305 52.174 10.72 0.00 32.29 4.18
2236 3931 3.568853 GGCCAACTAGCTTAGATAGTCGA 59.431 47.826 10.72 0.00 32.29 4.20
2237 3932 4.320641 GGCCAACTAGCTTAGATAGTCGAG 60.321 50.000 10.72 4.25 32.29 4.04
2238 3933 4.789784 CCAACTAGCTTAGATAGTCGAGC 58.210 47.826 10.72 0.00 32.29 5.03
2239 3934 4.517453 CCAACTAGCTTAGATAGTCGAGCT 59.483 45.833 10.72 12.87 41.33 4.09
2240 3935 5.448438 CAACTAGCTTAGATAGTCGAGCTG 58.552 45.833 10.72 1.58 39.70 4.24
2241 3936 4.963373 ACTAGCTTAGATAGTCGAGCTGA 58.037 43.478 4.13 0.00 39.70 4.26
2252 3947 2.243407 GTCGAGCTGACTTCTAACACG 58.757 52.381 0.00 0.00 44.58 4.49
2253 3948 1.199327 TCGAGCTGACTTCTAACACGG 59.801 52.381 0.00 0.00 0.00 4.94
2254 3949 1.351153 GAGCTGACTTCTAACACGGC 58.649 55.000 0.00 0.00 35.23 5.68
2255 3950 0.679505 AGCTGACTTCTAACACGGCA 59.320 50.000 0.00 0.00 37.14 5.69
2256 3951 0.790814 GCTGACTTCTAACACGGCAC 59.209 55.000 0.00 0.00 35.13 5.01
2257 3952 1.429463 CTGACTTCTAACACGGCACC 58.571 55.000 0.00 0.00 0.00 5.01
2258 3953 0.753867 TGACTTCTAACACGGCACCA 59.246 50.000 0.00 0.00 0.00 4.17
2259 3954 1.139256 TGACTTCTAACACGGCACCAA 59.861 47.619 0.00 0.00 0.00 3.67
2260 3955 2.224426 TGACTTCTAACACGGCACCAAT 60.224 45.455 0.00 0.00 0.00 3.16
2261 3956 2.151202 ACTTCTAACACGGCACCAATG 58.849 47.619 0.00 0.00 0.00 2.82
2262 3957 2.151202 CTTCTAACACGGCACCAATGT 58.849 47.619 0.00 0.00 0.00 2.71
2263 3958 2.264005 TCTAACACGGCACCAATGTT 57.736 45.000 10.28 10.28 39.75 2.71
2264 3959 1.876799 TCTAACACGGCACCAATGTTG 59.123 47.619 13.85 6.70 37.17 3.33
2265 3960 1.606668 CTAACACGGCACCAATGTTGT 59.393 47.619 13.85 0.00 37.17 3.32
2266 3961 0.820871 AACACGGCACCAATGTTGTT 59.179 45.000 5.70 0.00 35.28 2.83
2267 3962 0.383949 ACACGGCACCAATGTTGTTC 59.616 50.000 0.00 0.00 0.00 3.18
2268 3963 0.383590 CACGGCACCAATGTTGTTCA 59.616 50.000 0.00 0.00 0.00 3.18
2269 3964 1.107114 ACGGCACCAATGTTGTTCAA 58.893 45.000 0.00 0.00 0.00 2.69
2270 3965 1.066908 ACGGCACCAATGTTGTTCAAG 59.933 47.619 0.00 0.00 0.00 3.02
2271 3966 1.336440 CGGCACCAATGTTGTTCAAGA 59.664 47.619 0.00 0.00 0.00 3.02
2272 3967 2.223688 CGGCACCAATGTTGTTCAAGAA 60.224 45.455 0.00 0.00 0.00 2.52
2273 3968 3.736433 CGGCACCAATGTTGTTCAAGAAA 60.736 43.478 0.00 0.00 0.00 2.52
2274 3969 3.555547 GGCACCAATGTTGTTCAAGAAAC 59.444 43.478 0.00 0.00 38.43 2.78
2275 3970 4.180057 GCACCAATGTTGTTCAAGAAACA 58.820 39.130 0.00 0.00 46.11 2.83
2286 3981 6.003234 TGTTCAAGAAACAACTTTTGACGA 57.997 33.333 0.00 0.00 44.83 4.20
2287 3982 6.083630 TGTTCAAGAAACAACTTTTGACGAG 58.916 36.000 0.00 0.00 44.83 4.18
2288 3983 5.229921 TCAAGAAACAACTTTTGACGAGG 57.770 39.130 0.00 0.00 0.00 4.63
2289 3984 4.095782 TCAAGAAACAACTTTTGACGAGGG 59.904 41.667 0.00 0.00 0.00 4.30
2290 3985 2.949644 AGAAACAACTTTTGACGAGGGG 59.050 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.653287 CACTTCATTTATTAGGTTGTAGACTCA 57.347 33.333 0.00 0.00 0.00 3.41
21 22 9.871238 TCACTTCATTTATTAGGTTGTAGACTC 57.129 33.333 0.00 0.00 0.00 3.36
24 25 9.109393 GCATCACTTCATTTATTAGGTTGTAGA 57.891 33.333 0.00 0.00 0.00 2.59
25 26 8.892723 TGCATCACTTCATTTATTAGGTTGTAG 58.107 33.333 0.00 0.00 0.00 2.74
26 27 8.800370 TGCATCACTTCATTTATTAGGTTGTA 57.200 30.769 0.00 0.00 0.00 2.41
27 28 7.701539 TGCATCACTTCATTTATTAGGTTGT 57.298 32.000 0.00 0.00 0.00 3.32
28 29 8.407832 TCATGCATCACTTCATTTATTAGGTTG 58.592 33.333 0.00 0.00 0.00 3.77
29 30 8.523915 TCATGCATCACTTCATTTATTAGGTT 57.476 30.769 0.00 0.00 0.00 3.50
30 31 8.701908 ATCATGCATCACTTCATTTATTAGGT 57.298 30.769 0.00 0.00 0.00 3.08
34 35 9.740239 GTTGTATCATGCATCACTTCATTTATT 57.260 29.630 0.00 0.00 0.00 1.40
35 36 8.905850 TGTTGTATCATGCATCACTTCATTTAT 58.094 29.630 0.00 0.00 0.00 1.40
36 37 8.183536 GTGTTGTATCATGCATCACTTCATTTA 58.816 33.333 9.11 0.00 35.11 1.40
37 38 7.031372 GTGTTGTATCATGCATCACTTCATTT 58.969 34.615 9.11 0.00 35.11 2.32
38 39 6.151480 TGTGTTGTATCATGCATCACTTCATT 59.849 34.615 15.42 0.00 37.42 2.57
39 40 5.648960 TGTGTTGTATCATGCATCACTTCAT 59.351 36.000 15.42 0.00 37.42 2.57
40 41 5.002516 TGTGTTGTATCATGCATCACTTCA 58.997 37.500 15.42 5.58 37.42 3.02
41 42 5.550232 TGTGTTGTATCATGCATCACTTC 57.450 39.130 15.42 3.68 37.42 3.01
42 43 7.283807 ACATATGTGTTGTATCATGCATCACTT 59.716 33.333 7.78 12.28 37.42 3.16
43 44 6.769341 ACATATGTGTTGTATCATGCATCACT 59.231 34.615 7.78 6.40 37.42 3.41
44 45 6.962686 ACATATGTGTTGTATCATGCATCAC 58.037 36.000 7.78 9.38 34.01 3.06
45 46 7.571080 AACATATGTGTTGTATCATGCATCA 57.429 32.000 9.63 0.00 46.43 3.07
72 73 9.491406 TTTATGTTACTACCCCTACAATGAGTA 57.509 33.333 0.00 0.00 0.00 2.59
73 74 7.983166 TTATGTTACTACCCCTACAATGAGT 57.017 36.000 0.00 0.00 0.00 3.41
74 75 9.847224 AATTTATGTTACTACCCCTACAATGAG 57.153 33.333 0.00 0.00 0.00 2.90
106 107 9.197694 GTAACTTAGAGGAGTAACATGCATATG 57.802 37.037 0.00 0.00 40.24 1.78
107 108 9.148879 AGTAACTTAGAGGAGTAACATGCATAT 57.851 33.333 0.00 0.00 0.00 1.78
108 109 8.534954 AGTAACTTAGAGGAGTAACATGCATA 57.465 34.615 0.00 0.00 0.00 3.14
109 110 7.425224 AGTAACTTAGAGGAGTAACATGCAT 57.575 36.000 0.00 0.00 0.00 3.96
110 111 6.852420 AGTAACTTAGAGGAGTAACATGCA 57.148 37.500 0.00 0.00 0.00 3.96
111 112 7.201835 GGTAGTAACTTAGAGGAGTAACATGC 58.798 42.308 0.00 0.00 0.00 4.06
112 113 7.341256 TGGGTAGTAACTTAGAGGAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
113 114 7.341512 GTGGGTAGTAACTTAGAGGAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
114 115 6.660949 GTGGGTAGTAACTTAGAGGAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
115 116 6.889177 AGTGGGTAGTAACTTAGAGGAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
116 117 7.037342 AGTGGGTAGTAACTTAGAGGAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
117 118 6.649041 AGTGGGTAGTAACTTAGAGGAGTA 57.351 41.667 0.00 0.00 0.00 2.59
118 119 5.533333 AGTGGGTAGTAACTTAGAGGAGT 57.467 43.478 0.00 0.00 0.00 3.85
119 120 7.229106 GTCATAGTGGGTAGTAACTTAGAGGAG 59.771 44.444 0.00 0.00 0.00 3.69
120 121 7.059156 GTCATAGTGGGTAGTAACTTAGAGGA 58.941 42.308 0.00 0.00 0.00 3.71
121 122 7.061688 AGTCATAGTGGGTAGTAACTTAGAGG 58.938 42.308 0.00 0.00 0.00 3.69
122 123 9.275398 CTAGTCATAGTGGGTAGTAACTTAGAG 57.725 40.741 0.00 0.00 0.00 2.43
123 124 8.776119 ACTAGTCATAGTGGGTAGTAACTTAGA 58.224 37.037 0.00 0.00 40.84 2.10
124 125 8.977267 ACTAGTCATAGTGGGTAGTAACTTAG 57.023 38.462 0.00 0.00 40.84 2.18
125 126 8.776119 AGACTAGTCATAGTGGGTAGTAACTTA 58.224 37.037 24.44 0.00 42.46 2.24
126 127 7.641249 AGACTAGTCATAGTGGGTAGTAACTT 58.359 38.462 24.44 0.00 42.46 2.66
127 128 7.210618 AGACTAGTCATAGTGGGTAGTAACT 57.789 40.000 24.44 0.00 42.46 2.24
128 129 8.970859 TTAGACTAGTCATAGTGGGTAGTAAC 57.029 38.462 24.44 0.00 42.46 2.50
129 130 8.776119 ACTTAGACTAGTCATAGTGGGTAGTAA 58.224 37.037 24.44 8.71 42.46 2.24
130 131 8.329346 ACTTAGACTAGTCATAGTGGGTAGTA 57.671 38.462 24.44 1.11 42.46 1.82
131 132 7.210618 ACTTAGACTAGTCATAGTGGGTAGT 57.789 40.000 24.44 10.24 42.46 2.73
132 133 9.054922 GTAACTTAGACTAGTCATAGTGGGTAG 57.945 40.741 24.44 9.70 42.46 3.18
133 134 7.995488 GGTAACTTAGACTAGTCATAGTGGGTA 59.005 40.741 24.44 12.48 42.46 3.69
134 135 6.832900 GGTAACTTAGACTAGTCATAGTGGGT 59.167 42.308 24.44 13.32 42.46 4.51
135 136 7.274603 GGTAACTTAGACTAGTCATAGTGGG 57.725 44.000 24.44 9.39 42.46 4.61
150 151 8.191393 GGCTAGCCATAGTGGAGGTAACTTAG 62.191 50.000 29.33 0.00 41.22 2.18
151 152 6.451977 GGCTAGCCATAGTGGAGGTAACTTA 61.452 48.000 29.33 0.00 41.22 2.24
152 153 5.725714 GGCTAGCCATAGTGGAGGTAACTT 61.726 50.000 29.33 0.00 41.22 2.66
153 154 4.262446 GGCTAGCCATAGTGGAGGTAACT 61.262 52.174 29.33 0.00 40.96 2.24
154 155 2.037381 GGCTAGCCATAGTGGAGGTAAC 59.963 54.545 29.33 0.00 40.96 2.50
155 156 2.090719 AGGCTAGCCATAGTGGAGGTAA 60.091 50.000 34.70 0.00 40.96 2.85
156 157 1.503784 AGGCTAGCCATAGTGGAGGTA 59.496 52.381 34.70 0.00 40.96 3.08
157 158 0.266152 AGGCTAGCCATAGTGGAGGT 59.734 55.000 34.70 7.82 40.96 3.85
158 159 2.310779 TAGGCTAGCCATAGTGGAGG 57.689 55.000 34.70 0.00 40.96 4.30
159 160 6.607600 TGTATATTAGGCTAGCCATAGTGGAG 59.392 42.308 34.70 0.00 40.96 3.86
160 161 6.380274 GTGTATATTAGGCTAGCCATAGTGGA 59.620 42.308 34.70 13.61 40.96 4.02
161 162 6.154534 TGTGTATATTAGGCTAGCCATAGTGG 59.845 42.308 34.70 0.00 41.55 4.00
162 163 7.170393 TGTGTATATTAGGCTAGCCATAGTG 57.830 40.000 34.70 0.00 38.92 2.74
163 164 7.792364 TTGTGTATATTAGGCTAGCCATAGT 57.208 36.000 34.70 20.96 38.92 2.12
184 185 8.914011 GCCCATACCTTTTCTCTAATTAATTGT 58.086 33.333 11.05 0.00 0.00 2.71
185 186 8.360390 GGCCCATACCTTTTCTCTAATTAATTG 58.640 37.037 11.05 1.65 0.00 2.32
186 187 7.509318 GGGCCCATACCTTTTCTCTAATTAATT 59.491 37.037 19.95 5.89 0.00 1.40
187 188 7.010771 GGGCCCATACCTTTTCTCTAATTAAT 58.989 38.462 19.95 0.00 0.00 1.40
188 189 6.370453 GGGCCCATACCTTTTCTCTAATTAA 58.630 40.000 19.95 0.00 0.00 1.40
189 190 5.163023 GGGGCCCATACCTTTTCTCTAATTA 60.163 44.000 26.86 0.00 0.00 1.40
190 191 4.387550 GGGGCCCATACCTTTTCTCTAATT 60.388 45.833 26.86 0.00 0.00 1.40
191 192 3.140332 GGGGCCCATACCTTTTCTCTAAT 59.860 47.826 26.86 0.00 0.00 1.73
192 193 2.512476 GGGGCCCATACCTTTTCTCTAA 59.488 50.000 26.86 0.00 0.00 2.10
193 194 2.132686 GGGGCCCATACCTTTTCTCTA 58.867 52.381 26.86 0.00 0.00 2.43
194 195 0.927029 GGGGCCCATACCTTTTCTCT 59.073 55.000 26.86 0.00 0.00 3.10
195 196 0.106167 GGGGGCCCATACCTTTTCTC 60.106 60.000 26.86 0.00 35.81 2.87
196 197 2.015921 GGGGGCCCATACCTTTTCT 58.984 57.895 26.86 0.00 35.81 2.52
197 198 4.699192 GGGGGCCCATACCTTTTC 57.301 61.111 26.86 1.47 35.81 2.29
211 212 3.621805 GGTTTTGGCCAACGGGGG 61.622 66.667 20.35 0.00 37.04 5.40
212 213 3.984749 CGGTTTTGGCCAACGGGG 61.985 66.667 20.35 4.41 40.85 5.73
213 214 2.907917 TCGGTTTTGGCCAACGGG 60.908 61.111 20.35 8.19 37.18 5.28
214 215 2.642700 CTCGGTTTTGGCCAACGG 59.357 61.111 20.35 13.29 0.00 4.44
215 216 2.050442 GCTCGGTTTTGGCCAACG 60.050 61.111 20.35 19.06 0.00 4.10
216 217 0.104120 AAAGCTCGGTTTTGGCCAAC 59.896 50.000 20.35 8.63 0.00 3.77
217 218 0.103937 CAAAGCTCGGTTTTGGCCAA 59.896 50.000 16.05 16.05 31.74 4.52
218 219 0.753479 TCAAAGCTCGGTTTTGGCCA 60.753 50.000 0.00 0.00 35.13 5.36
219 220 0.387565 TTCAAAGCTCGGTTTTGGCC 59.612 50.000 0.00 0.00 35.13 5.36
220 221 2.217429 TTTCAAAGCTCGGTTTTGGC 57.783 45.000 11.26 0.00 35.13 4.52
221 222 4.552572 GCAATTTTCAAAGCTCGGTTTTGG 60.553 41.667 11.26 0.04 35.13 3.28
222 223 4.270808 AGCAATTTTCAAAGCTCGGTTTTG 59.729 37.500 6.81 6.81 35.59 2.44
223 224 4.441792 AGCAATTTTCAAAGCTCGGTTTT 58.558 34.783 0.00 0.00 30.05 2.43
224 225 4.051237 GAGCAATTTTCAAAGCTCGGTTT 58.949 39.130 0.00 0.00 43.27 3.27
225 226 3.642705 GAGCAATTTTCAAAGCTCGGTT 58.357 40.909 0.00 0.00 43.27 4.44
226 227 3.288809 GAGCAATTTTCAAAGCTCGGT 57.711 42.857 0.00 0.00 43.27 4.69
230 231 4.677673 AGTTGGAGCAATTTTCAAAGCT 57.322 36.364 0.00 0.00 40.60 3.74
231 232 5.739752 AAAGTTGGAGCAATTTTCAAAGC 57.260 34.783 0.00 0.00 29.62 3.51
232 233 8.925700 GGTATAAAGTTGGAGCAATTTTCAAAG 58.074 33.333 0.00 0.00 35.51 2.77
233 234 7.596995 CGGTATAAAGTTGGAGCAATTTTCAAA 59.403 33.333 0.00 0.00 35.51 2.69
234 235 7.087639 CGGTATAAAGTTGGAGCAATTTTCAA 58.912 34.615 0.00 0.00 35.51 2.69
235 236 6.207810 ACGGTATAAAGTTGGAGCAATTTTCA 59.792 34.615 0.00 0.00 35.51 2.69
236 237 6.617879 ACGGTATAAAGTTGGAGCAATTTTC 58.382 36.000 0.00 0.00 35.51 2.29
237 238 6.584185 ACGGTATAAAGTTGGAGCAATTTT 57.416 33.333 0.00 0.00 37.17 1.82
238 239 6.386654 CAACGGTATAAAGTTGGAGCAATTT 58.613 36.000 11.63 0.00 42.72 1.82
239 240 5.949735 CAACGGTATAAAGTTGGAGCAATT 58.050 37.500 11.63 0.00 42.72 2.32
240 241 5.560966 CAACGGTATAAAGTTGGAGCAAT 57.439 39.130 11.63 0.00 42.72 3.56
265 266 7.659799 GCGGGGCCTAAATTTTAAATTTATCAT 59.340 33.333 19.21 1.08 0.00 2.45
266 267 6.987404 GCGGGGCCTAAATTTTAAATTTATCA 59.013 34.615 19.21 4.23 0.00 2.15
267 268 6.987404 TGCGGGGCCTAAATTTTAAATTTATC 59.013 34.615 19.21 14.60 0.00 1.75
268 269 6.890293 TGCGGGGCCTAAATTTTAAATTTAT 58.110 32.000 19.21 2.35 0.00 1.40
307 308 2.628657 ACACCATAGATAAGCCGTCCTC 59.371 50.000 0.00 0.00 0.00 3.71
308 309 2.365617 CACACCATAGATAAGCCGTCCT 59.634 50.000 0.00 0.00 0.00 3.85
311 312 3.641436 TGATCACACCATAGATAAGCCGT 59.359 43.478 0.00 0.00 0.00 5.68
312 313 4.021981 TCTGATCACACCATAGATAAGCCG 60.022 45.833 0.00 0.00 0.00 5.52
313 314 5.474578 TCTGATCACACCATAGATAAGCC 57.525 43.478 0.00 0.00 0.00 4.35
314 315 6.423302 CAGTTCTGATCACACCATAGATAAGC 59.577 42.308 0.00 0.00 0.00 3.09
315 316 7.495901 ACAGTTCTGATCACACCATAGATAAG 58.504 38.462 6.83 0.00 0.00 1.73
447 449 2.728817 GCGCACGCCTAGGTCTAT 59.271 61.111 11.31 0.00 34.56 1.98
566 568 8.319057 TGAAAGACCACCAGTTATATATCACT 57.681 34.615 0.00 0.00 0.00 3.41
567 569 8.958119 TTGAAAGACCACCAGTTATATATCAC 57.042 34.615 0.00 0.00 0.00 3.06
571 573 9.104965 CGATTTTGAAAGACCACCAGTTATATA 57.895 33.333 0.00 0.00 0.00 0.86
694 2388 6.539173 TGATGTTTTAGGCTGGAAACTCTAA 58.461 36.000 21.17 8.35 36.84 2.10
696 2390 4.985538 TGATGTTTTAGGCTGGAAACTCT 58.014 39.130 21.17 12.96 36.84 3.24
737 2431 6.317642 CCACATTTATTCGTACCTGAATTGGA 59.682 38.462 1.96 0.00 39.27 3.53
858 2553 2.169352 AGATAGACCGCTTGTTCTGCAT 59.831 45.455 0.00 0.00 0.00 3.96
1053 2748 2.142357 GAAAGGCCCGTTTGCAGGAC 62.142 60.000 0.00 0.00 0.00 3.85
1655 3350 0.674895 AAACATGGACGAGCAGCTCC 60.675 55.000 17.16 4.43 0.00 4.70
1931 3626 5.659440 TGTCCTCCTTATTTTGAATTGCC 57.341 39.130 0.00 0.00 0.00 4.52
1943 3638 2.501723 GAGTGCCTTCATGTCCTCCTTA 59.498 50.000 0.00 0.00 0.00 2.69
1968 3663 0.884704 TCCAACTCTGCCAAACGAGC 60.885 55.000 0.00 0.00 0.00 5.03
2014 3709 1.136329 ATCCAGTCCAGGCACCAGTT 61.136 55.000 0.00 0.00 0.00 3.16
2043 3738 2.765969 CACCACCAAGGCATCCCT 59.234 61.111 0.00 0.00 45.77 4.20
2044 3739 3.070576 GCACCACCAAGGCATCCC 61.071 66.667 0.00 0.00 43.14 3.85
2045 3740 1.683365 ATGCACCACCAAGGCATCC 60.683 57.895 0.00 0.00 44.41 3.51
2046 3741 1.514087 CATGCACCACCAAGGCATC 59.486 57.895 0.00 0.00 45.81 3.91
2048 3743 3.304721 GCATGCACCACCAAGGCA 61.305 61.111 14.21 0.00 43.14 4.75
2049 3744 2.993264 AGCATGCACCACCAAGGC 60.993 61.111 21.98 0.00 43.14 4.35
2050 3745 1.592400 CTCAGCATGCACCACCAAGG 61.592 60.000 21.98 0.00 39.07 3.61
2051 3746 1.592400 CCTCAGCATGCACCACCAAG 61.592 60.000 21.98 5.80 34.76 3.61
2052 3747 1.604308 CCTCAGCATGCACCACCAA 60.604 57.895 21.98 0.00 34.76 3.67
2053 3748 2.034532 CCTCAGCATGCACCACCA 59.965 61.111 21.98 0.00 34.76 4.17
2054 3749 2.042831 GTCCTCAGCATGCACCACC 61.043 63.158 21.98 0.00 34.76 4.61
2055 3750 2.393768 CGTCCTCAGCATGCACCAC 61.394 63.158 21.98 7.76 34.76 4.16
2056 3751 2.046988 CGTCCTCAGCATGCACCA 60.047 61.111 21.98 1.39 34.76 4.17
2057 3752 2.046892 ACGTCCTCAGCATGCACC 60.047 61.111 21.98 0.00 34.76 5.01
2058 3753 1.374631 TGACGTCCTCAGCATGCAC 60.375 57.895 21.98 7.80 34.76 4.57
2059 3754 1.374631 GTGACGTCCTCAGCATGCA 60.375 57.895 21.98 0.00 34.76 3.96
2060 3755 2.103042 GGTGACGTCCTCAGCATGC 61.103 63.158 14.12 10.51 45.37 4.06
2061 3756 4.192000 GGTGACGTCCTCAGCATG 57.808 61.111 14.12 0.00 45.37 4.06
2064 3759 0.737715 GACATGGTGACGTCCTCAGC 60.738 60.000 14.12 5.50 46.12 4.26
2065 3760 0.108615 GGACATGGTGACGTCCTCAG 60.109 60.000 14.12 7.82 46.83 3.35
2066 3761 1.972198 GGACATGGTGACGTCCTCA 59.028 57.895 14.12 11.60 46.83 3.86
2067 3762 4.913126 GGACATGGTGACGTCCTC 57.087 61.111 14.12 6.20 46.83 3.71
2070 3765 4.598257 CCAGGACATGGTGACGTC 57.402 61.111 9.11 9.11 44.91 4.34
2078 3773 2.014857 CTTGAGATGCACCAGGACATG 58.985 52.381 0.00 0.00 0.00 3.21
2079 3774 1.064906 CCTTGAGATGCACCAGGACAT 60.065 52.381 0.00 0.00 0.00 3.06
2080 3775 0.325933 CCTTGAGATGCACCAGGACA 59.674 55.000 0.00 0.00 0.00 4.02
2081 3776 1.028868 GCCTTGAGATGCACCAGGAC 61.029 60.000 0.00 0.00 0.00 3.85
2082 3777 1.300963 GCCTTGAGATGCACCAGGA 59.699 57.895 0.00 0.00 0.00 3.86
2083 3778 2.110967 CGCCTTGAGATGCACCAGG 61.111 63.158 0.00 0.00 0.00 4.45
2084 3779 0.674581 TTCGCCTTGAGATGCACCAG 60.675 55.000 0.00 0.00 0.00 4.00
2085 3780 0.674581 CTTCGCCTTGAGATGCACCA 60.675 55.000 0.00 0.00 0.00 4.17
2086 3781 1.372087 CCTTCGCCTTGAGATGCACC 61.372 60.000 0.00 0.00 0.00 5.01
2087 3782 0.391661 TCCTTCGCCTTGAGATGCAC 60.392 55.000 0.00 0.00 0.00 4.57
2088 3783 0.107993 CTCCTTCGCCTTGAGATGCA 60.108 55.000 0.00 0.00 0.00 3.96
2089 3784 1.435408 GCTCCTTCGCCTTGAGATGC 61.435 60.000 0.00 0.00 0.00 3.91
2090 3785 0.177604 AGCTCCTTCGCCTTGAGATG 59.822 55.000 0.00 0.00 0.00 2.90
2091 3786 0.908198 AAGCTCCTTCGCCTTGAGAT 59.092 50.000 0.00 0.00 0.00 2.75
2092 3787 0.247736 GAAGCTCCTTCGCCTTGAGA 59.752 55.000 0.00 0.00 30.62 3.27
2093 3788 0.742635 GGAAGCTCCTTCGCCTTGAG 60.743 60.000 0.00 0.00 40.99 3.02
2094 3789 1.194781 AGGAAGCTCCTTCGCCTTGA 61.195 55.000 0.00 0.00 46.91 3.02
2095 3790 0.537188 TAGGAAGCTCCTTCGCCTTG 59.463 55.000 9.58 0.00 46.91 3.61
2096 3791 0.537653 GTAGGAAGCTCCTTCGCCTT 59.462 55.000 9.58 0.00 46.91 4.35
2097 3792 1.331399 GGTAGGAAGCTCCTTCGCCT 61.331 60.000 9.58 0.00 46.91 5.52
2098 3793 1.144276 GGTAGGAAGCTCCTTCGCC 59.856 63.158 9.58 7.05 46.91 5.54
2099 3794 1.227002 CGGTAGGAAGCTCCTTCGC 60.227 63.158 9.58 2.68 46.91 4.70
2100 3795 0.531200 AACGGTAGGAAGCTCCTTCG 59.469 55.000 9.58 14.32 46.91 3.79
2101 3796 1.134759 GGAACGGTAGGAAGCTCCTTC 60.135 57.143 9.58 5.43 46.91 3.46
2102 3797 0.903236 GGAACGGTAGGAAGCTCCTT 59.097 55.000 9.58 0.00 46.91 3.36
2104 3799 0.460722 GAGGAACGGTAGGAAGCTCC 59.539 60.000 0.00 0.00 36.58 4.70
2105 3800 0.460722 GGAGGAACGGTAGGAAGCTC 59.539 60.000 0.00 0.00 0.00 4.09
2106 3801 0.041386 AGGAGGAACGGTAGGAAGCT 59.959 55.000 0.00 0.00 0.00 3.74
2107 3802 0.903236 AAGGAGGAACGGTAGGAAGC 59.097 55.000 0.00 0.00 0.00 3.86
2108 3803 1.405661 GCAAGGAGGAACGGTAGGAAG 60.406 57.143 0.00 0.00 0.00 3.46
2109 3804 0.611714 GCAAGGAGGAACGGTAGGAA 59.388 55.000 0.00 0.00 0.00 3.36
2110 3805 0.543410 TGCAAGGAGGAACGGTAGGA 60.543 55.000 0.00 0.00 0.00 2.94
2111 3806 0.323629 TTGCAAGGAGGAACGGTAGG 59.676 55.000 0.00 0.00 0.00 3.18
2112 3807 1.275291 TCTTGCAAGGAGGAACGGTAG 59.725 52.381 25.73 0.00 0.00 3.18
2113 3808 1.344065 TCTTGCAAGGAGGAACGGTA 58.656 50.000 25.73 0.00 0.00 4.02
2114 3809 0.693049 ATCTTGCAAGGAGGAACGGT 59.307 50.000 25.73 0.00 0.00 4.83
2115 3810 1.089920 CATCTTGCAAGGAGGAACGG 58.910 55.000 25.73 0.00 0.00 4.44
2116 3811 1.089920 CCATCTTGCAAGGAGGAACG 58.910 55.000 25.73 7.05 0.00 3.95
2117 3812 1.815003 CACCATCTTGCAAGGAGGAAC 59.185 52.381 31.59 0.00 0.00 3.62
2118 3813 1.425066 ACACCATCTTGCAAGGAGGAA 59.575 47.619 31.59 14.44 0.00 3.36
2119 3814 1.067295 ACACCATCTTGCAAGGAGGA 58.933 50.000 31.59 14.96 0.00 3.71
2120 3815 1.542915 CAACACCATCTTGCAAGGAGG 59.457 52.381 25.73 26.17 0.00 4.30
2121 3816 1.542915 CCAACACCATCTTGCAAGGAG 59.457 52.381 25.73 17.49 0.00 3.69
2122 3817 1.144708 TCCAACACCATCTTGCAAGGA 59.855 47.619 25.73 13.14 0.00 3.36
2123 3818 1.542915 CTCCAACACCATCTTGCAAGG 59.457 52.381 25.73 13.88 0.00 3.61
2124 3819 1.542915 CCTCCAACACCATCTTGCAAG 59.457 52.381 20.81 20.81 0.00 4.01
2125 3820 1.619654 CCTCCAACACCATCTTGCAA 58.380 50.000 0.00 0.00 0.00 4.08
2126 3821 0.895100 GCCTCCAACACCATCTTGCA 60.895 55.000 0.00 0.00 0.00 4.08
2127 3822 1.885871 GCCTCCAACACCATCTTGC 59.114 57.895 0.00 0.00 0.00 4.01
2128 3823 0.321564 TCGCCTCCAACACCATCTTG 60.322 55.000 0.00 0.00 0.00 3.02
2129 3824 0.036010 CTCGCCTCCAACACCATCTT 60.036 55.000 0.00 0.00 0.00 2.40
2130 3825 1.599047 CTCGCCTCCAACACCATCT 59.401 57.895 0.00 0.00 0.00 2.90
2131 3826 2.109126 GCTCGCCTCCAACACCATC 61.109 63.158 0.00 0.00 0.00 3.51
2132 3827 2.045926 GCTCGCCTCCAACACCAT 60.046 61.111 0.00 0.00 0.00 3.55
2133 3828 3.113514 TTGCTCGCCTCCAACACCA 62.114 57.895 0.00 0.00 0.00 4.17
2134 3829 2.281484 TTGCTCGCCTCCAACACC 60.281 61.111 0.00 0.00 0.00 4.16
2135 3830 2.328099 CCTTGCTCGCCTCCAACAC 61.328 63.158 0.00 0.00 0.00 3.32
2136 3831 2.032528 CCTTGCTCGCCTCCAACA 59.967 61.111 0.00 0.00 0.00 3.33
2137 3832 3.435186 GCCTTGCTCGCCTCCAAC 61.435 66.667 0.00 0.00 0.00 3.77
2138 3833 4.722700 GGCCTTGCTCGCCTCCAA 62.723 66.667 0.00 0.00 43.48 3.53
2145 3840 2.674380 AAGCCAAGGCCTTGCTCG 60.674 61.111 35.85 24.49 43.17 5.03
2146 3841 1.604593 TGAAGCCAAGGCCTTGCTC 60.605 57.895 35.85 28.70 43.17 4.26
2147 3842 1.905354 GTGAAGCCAAGGCCTTGCT 60.905 57.895 35.85 30.79 43.17 3.91
2148 3843 2.151049 CTGTGAAGCCAAGGCCTTGC 62.151 60.000 35.85 29.30 43.17 4.01
2149 3844 1.530013 CCTGTGAAGCCAAGGCCTTG 61.530 60.000 34.60 34.60 43.17 3.61
2150 3845 1.228675 CCTGTGAAGCCAAGGCCTT 60.229 57.895 13.78 13.78 43.17 4.35
2151 3846 2.437897 CCTGTGAAGCCAAGGCCT 59.562 61.111 0.00 0.00 43.17 5.19
2152 3847 2.116125 ACCTGTGAAGCCAAGGCC 59.884 61.111 7.62 0.00 43.17 5.19
2153 3848 2.270986 CCACCTGTGAAGCCAAGGC 61.271 63.158 2.02 2.02 42.33 4.35
2154 3849 0.890996 GACCACCTGTGAAGCCAAGG 60.891 60.000 0.00 0.00 0.00 3.61
2155 3850 0.179020 TGACCACCTGTGAAGCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
2156 3851 0.257328 TTGACCACCTGTGAAGCCAA 59.743 50.000 0.00 0.00 0.00 4.52
2157 3852 0.257328 TTTGACCACCTGTGAAGCCA 59.743 50.000 0.00 0.00 0.00 4.75
2158 3853 0.668535 GTTTGACCACCTGTGAAGCC 59.331 55.000 0.00 0.00 0.00 4.35
2159 3854 1.680338 AGTTTGACCACCTGTGAAGC 58.320 50.000 0.00 0.00 0.00 3.86
2160 3855 4.336889 TCTAGTTTGACCACCTGTGAAG 57.663 45.455 0.00 0.00 0.00 3.02
2161 3856 4.974645 ATCTAGTTTGACCACCTGTGAA 57.025 40.909 0.00 0.00 0.00 3.18
2162 3857 4.504864 CCAATCTAGTTTGACCACCTGTGA 60.505 45.833 13.98 0.00 0.00 3.58
2163 3858 3.753272 CCAATCTAGTTTGACCACCTGTG 59.247 47.826 13.98 0.00 0.00 3.66
2164 3859 3.244911 CCCAATCTAGTTTGACCACCTGT 60.245 47.826 13.98 0.00 0.00 4.00
2165 3860 3.347216 CCCAATCTAGTTTGACCACCTG 58.653 50.000 13.98 0.00 0.00 4.00
2166 3861 2.290960 GCCCAATCTAGTTTGACCACCT 60.291 50.000 13.98 0.00 0.00 4.00
2167 3862 2.092323 GCCCAATCTAGTTTGACCACC 58.908 52.381 13.98 0.00 0.00 4.61
2168 3863 1.737793 CGCCCAATCTAGTTTGACCAC 59.262 52.381 13.98 1.54 0.00 4.16
2169 3864 1.339631 CCGCCCAATCTAGTTTGACCA 60.340 52.381 13.98 0.00 0.00 4.02
2170 3865 1.339727 ACCGCCCAATCTAGTTTGACC 60.340 52.381 13.98 4.76 0.00 4.02
2171 3866 2.109425 ACCGCCCAATCTAGTTTGAC 57.891 50.000 13.98 5.96 0.00 3.18
2172 3867 2.304761 AGAACCGCCCAATCTAGTTTGA 59.695 45.455 13.98 0.00 0.00 2.69
2173 3868 2.711542 AGAACCGCCCAATCTAGTTTG 58.288 47.619 6.57 6.57 0.00 2.93
2174 3869 4.444449 GGATAGAACCGCCCAATCTAGTTT 60.444 45.833 0.00 0.00 0.00 2.66
2175 3870 3.071167 GGATAGAACCGCCCAATCTAGTT 59.929 47.826 0.00 0.00 0.00 2.24
2176 3871 2.633481 GGATAGAACCGCCCAATCTAGT 59.367 50.000 0.00 0.00 0.00 2.57
2177 3872 2.632996 TGGATAGAACCGCCCAATCTAG 59.367 50.000 0.00 0.00 0.00 2.43
2178 3873 2.632996 CTGGATAGAACCGCCCAATCTA 59.367 50.000 0.00 0.00 0.00 1.98
2179 3874 1.417890 CTGGATAGAACCGCCCAATCT 59.582 52.381 0.00 0.00 0.00 2.40
2180 3875 1.543429 CCTGGATAGAACCGCCCAATC 60.543 57.143 0.00 0.00 0.00 2.67
2181 3876 0.474184 CCTGGATAGAACCGCCCAAT 59.526 55.000 0.00 0.00 0.00 3.16
2182 3877 1.912220 CCTGGATAGAACCGCCCAA 59.088 57.895 0.00 0.00 0.00 4.12
2183 3878 2.742116 GCCTGGATAGAACCGCCCA 61.742 63.158 0.00 0.00 0.00 5.36
2184 3879 1.119574 TAGCCTGGATAGAACCGCCC 61.120 60.000 0.00 0.00 0.00 6.13
2185 3880 0.977395 ATAGCCTGGATAGAACCGCC 59.023 55.000 0.00 0.00 0.00 6.13
2186 3881 2.841442 AATAGCCTGGATAGAACCGC 57.159 50.000 0.00 0.00 0.00 5.68
2187 3882 3.815401 CCAAAATAGCCTGGATAGAACCG 59.185 47.826 0.00 0.00 34.35 4.44
2188 3883 4.793201 ACCAAAATAGCCTGGATAGAACC 58.207 43.478 0.00 0.00 36.49 3.62
2189 3884 4.511826 CGACCAAAATAGCCTGGATAGAAC 59.488 45.833 0.00 0.00 36.49 3.01
2190 3885 4.444306 CCGACCAAAATAGCCTGGATAGAA 60.444 45.833 0.00 0.00 36.49 2.10
2191 3886 3.071023 CCGACCAAAATAGCCTGGATAGA 59.929 47.826 0.00 0.00 36.49 1.98
2192 3887 3.403038 CCGACCAAAATAGCCTGGATAG 58.597 50.000 0.00 0.00 36.49 2.08
2193 3888 2.105821 CCCGACCAAAATAGCCTGGATA 59.894 50.000 0.00 0.00 36.49 2.59
2194 3889 1.133792 CCCGACCAAAATAGCCTGGAT 60.134 52.381 0.00 0.00 36.49 3.41
2195 3890 0.254747 CCCGACCAAAATAGCCTGGA 59.745 55.000 0.00 0.00 36.49 3.86
2196 3891 0.751643 CCCCGACCAAAATAGCCTGG 60.752 60.000 0.00 0.00 38.77 4.45
2197 3892 1.384222 GCCCCGACCAAAATAGCCTG 61.384 60.000 0.00 0.00 0.00 4.85
2198 3893 1.076995 GCCCCGACCAAAATAGCCT 60.077 57.895 0.00 0.00 0.00 4.58
2199 3894 2.125326 GGCCCCGACCAAAATAGCC 61.125 63.158 0.00 0.00 0.00 3.93
2200 3895 0.968393 TTGGCCCCGACCAAAATAGC 60.968 55.000 0.00 0.00 46.65 2.97
2201 3896 3.274601 TTGGCCCCGACCAAAATAG 57.725 52.632 0.00 0.00 46.65 1.73
2207 3902 3.712907 GCTAGTTGGCCCCGACCA 61.713 66.667 0.00 0.00 38.16 4.02
2208 3903 1.619807 TAAGCTAGTTGGCCCCGACC 61.620 60.000 0.00 0.00 0.00 4.79
2209 3904 0.179081 CTAAGCTAGTTGGCCCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
2210 3905 0.324923 TCTAAGCTAGTTGGCCCCGA 60.325 55.000 0.00 0.00 0.00 5.14
2211 3906 0.759346 ATCTAAGCTAGTTGGCCCCG 59.241 55.000 0.00 0.00 0.00 5.73
2212 3907 2.973406 ACTATCTAAGCTAGTTGGCCCC 59.027 50.000 0.00 0.00 0.00 5.80
2213 3908 3.305471 CGACTATCTAAGCTAGTTGGCCC 60.305 52.174 0.00 0.00 29.67 5.80
2214 3909 3.568853 TCGACTATCTAAGCTAGTTGGCC 59.431 47.826 0.00 0.00 33.25 5.36
2215 3910 4.789784 CTCGACTATCTAAGCTAGTTGGC 58.210 47.826 1.77 0.00 33.25 4.52
2216 3911 4.517453 AGCTCGACTATCTAAGCTAGTTGG 59.483 45.833 1.77 0.00 43.04 3.77
2217 3912 5.237561 TCAGCTCGACTATCTAAGCTAGTTG 59.762 44.000 0.00 0.00 42.99 3.16
2218 3913 5.237779 GTCAGCTCGACTATCTAAGCTAGTT 59.762 44.000 8.50 0.00 42.99 2.24
2219 3914 4.753107 GTCAGCTCGACTATCTAAGCTAGT 59.247 45.833 8.50 0.00 42.99 2.57
2220 3915 5.277601 GTCAGCTCGACTATCTAAGCTAG 57.722 47.826 8.50 0.00 42.99 3.42
2232 3927 2.243407 CGTGTTAGAAGTCAGCTCGAC 58.757 52.381 7.88 7.88 45.77 4.20
2233 3928 1.199327 CCGTGTTAGAAGTCAGCTCGA 59.801 52.381 0.00 0.00 0.00 4.04
2234 3929 1.618861 CCGTGTTAGAAGTCAGCTCG 58.381 55.000 0.00 0.00 0.00 5.03
2235 3930 1.336887 TGCCGTGTTAGAAGTCAGCTC 60.337 52.381 0.00 0.00 0.00 4.09
2236 3931 0.679505 TGCCGTGTTAGAAGTCAGCT 59.320 50.000 0.00 0.00 0.00 4.24
2237 3932 0.790814 GTGCCGTGTTAGAAGTCAGC 59.209 55.000 0.00 0.00 0.00 4.26
2238 3933 1.270094 TGGTGCCGTGTTAGAAGTCAG 60.270 52.381 0.00 0.00 0.00 3.51
2239 3934 0.753867 TGGTGCCGTGTTAGAAGTCA 59.246 50.000 0.00 0.00 0.00 3.41
2240 3935 1.873698 TTGGTGCCGTGTTAGAAGTC 58.126 50.000 0.00 0.00 0.00 3.01
2241 3936 2.151202 CATTGGTGCCGTGTTAGAAGT 58.849 47.619 0.00 0.00 0.00 3.01
2242 3937 2.151202 ACATTGGTGCCGTGTTAGAAG 58.849 47.619 0.00 0.00 0.00 2.85
2243 3938 2.264005 ACATTGGTGCCGTGTTAGAA 57.736 45.000 0.00 0.00 0.00 2.10
2244 3939 1.876799 CAACATTGGTGCCGTGTTAGA 59.123 47.619 10.15 0.00 34.55 2.10
2245 3940 1.606668 ACAACATTGGTGCCGTGTTAG 59.393 47.619 0.45 8.31 34.55 2.34
2246 3941 1.681538 ACAACATTGGTGCCGTGTTA 58.318 45.000 0.45 0.00 34.55 2.41
2247 3942 0.820871 AACAACATTGGTGCCGTGTT 59.179 45.000 0.45 6.14 36.57 3.32
2248 3943 0.383949 GAACAACATTGGTGCCGTGT 59.616 50.000 0.45 0.00 0.00 4.49
2249 3944 0.383590 TGAACAACATTGGTGCCGTG 59.616 50.000 0.45 0.00 0.00 4.94
2250 3945 1.066908 CTTGAACAACATTGGTGCCGT 59.933 47.619 0.45 0.00 0.00 5.68
2251 3946 1.336440 TCTTGAACAACATTGGTGCCG 59.664 47.619 0.45 0.00 0.00 5.69
2252 3947 3.451141 TTCTTGAACAACATTGGTGCC 57.549 42.857 0.45 0.00 0.00 5.01
2253 3948 4.180057 TGTTTCTTGAACAACATTGGTGC 58.820 39.130 0.45 0.00 44.95 5.01
2263 3958 6.003234 TCGTCAAAAGTTGTTTCTTGAACA 57.997 33.333 0.00 0.00 46.19 3.18
2264 3959 5.511729 CCTCGTCAAAAGTTGTTTCTTGAAC 59.488 40.000 0.00 0.00 38.78 3.18
2265 3960 5.392595 CCCTCGTCAAAAGTTGTTTCTTGAA 60.393 40.000 0.00 0.00 0.00 2.69
2266 3961 4.095782 CCCTCGTCAAAAGTTGTTTCTTGA 59.904 41.667 0.00 0.00 0.00 3.02
2267 3962 4.351192 CCCTCGTCAAAAGTTGTTTCTTG 58.649 43.478 0.00 0.00 0.00 3.02
2268 3963 3.380320 CCCCTCGTCAAAAGTTGTTTCTT 59.620 43.478 0.00 0.00 0.00 2.52
2269 3964 2.949644 CCCCTCGTCAAAAGTTGTTTCT 59.050 45.455 0.00 0.00 0.00 2.52
2270 3965 3.349488 CCCCTCGTCAAAAGTTGTTTC 57.651 47.619 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.